[ncl-talk] trouble reading .h5 file

[Manisha Ganeshan]

I'd like to add that I used miniconda for installing NCL 6.6.2.
I'm wondering if the problem will be fixed if I were to try to download and
install the pre-compiled version of the code.

On Fri, Aug 21, 2020 at 5:41 PM Manisha Ganeshan <
manisha.ganeshan86 at gmail.com> wrote:

> Would it be a good idea to try and re-install NCL perhaps?
>
> On Fri, Aug 21, 2020 at 4:44 PM Manisha Ganeshan <
> manisha.ganeshan86 at gmail.com> wrote:
>
>> It is failing when I type addfile(), and when I type ncl_dump, with
>> "segmentation fault".
>>
>> On Fri, Aug 21, 2020 at 4:43 PM Manisha Ganeshan <
>> manisha.ganeshan86 at gmail.com> wrote:
>>
>>> I'm confirming that I'm in fact using version 6.6.2 (I've checked ncl
>>> -v).
>>> It's odd that I'm able to read the file in another linux system which is
>>> very similar to the one I'm using. Both systems have NCL version 6.6.2.
>>> Unfortunately, all the data are in the first linux system, and so I'm
>>> trying to find an efficient way to solve this problem.
>>>
>>>
>>> On Fri, Aug 21, 2020 at 4:39 PM Rick Brownrigg <brownrig at ucar.edu>
>>> wrote:
>>>
>>>> Well I don't think the size (1.5GB) is an issue. Again, are you using
>>>> an older version?
>>>>
>>>>     ncl -v
>>>>
>>>> Is it failing when you do a simple addfile()?  Or when you actually
>>>> access a particular variable?
>>>>
>>>> On Fri, Aug 21, 2020 at 1:17 PM Manisha Ganeshan <
>>>> manisha.ganeshan86 at gmail.com> wrote:
>>>>
>>>>> Is there any other reason it could be failing due to segmentation
>>>>> fault?
>>>>>
>>>>> On Fri, Aug 21, 2020 at 2:57 PM Manisha Ganeshan <
>>>>> manisha.ganeshan86 at gmail.com> wrote:
>>>>>
>>>>>> Hi Rick,
>>>>>>
>>>>>> I'm using the same version (6.6.2). I installed using conda, and so
>>>>>> far it has worked okay. I've read .he5 files using the same version.
>>>>>>
>>>>>> Nisha
>>>>>>
>>>>>> On Fri, Aug 21, 2020 at 1:54 PM Rick Brownrigg <brownrig at ucar.edu>
>>>>>> wrote:
>>>>>>
>>>>>>> Hi Nisha,
>>>>>>>
>>>>>>> I was able to read that file just fine with ncl_filedump.  This is
>>>>>>> on a mac using the latest version, ncl v6.6.2
>>>>>>>
>>>>>>> Are you using an older version of NCL?  More recent versions have
>>>>>>> better and more complete support for HDF5.
>>>>>>>
>>>>>>> Hope that helps...
>>>>>>> Rick
>>>>>>>
>>>>>>>
>>>>>>> On Fri, Aug 21, 2020 at 11:25 AM Manisha Ganeshan via ncl-talk <
>>>>>>> ncl-talk at mailman.ucar.edu> wrote:
>>>>>>>
>>>>>>>>  ATL09_20181016052938_02690101_002_01.h5
>>>>>>>> <https://drive.google.com/file/d/1RICsYg5nwZTcVeCGJmdkvED445pQaTp6/view?usp=drive_web>
>>>>>>>> Hello,
>>>>>>>>
>>>>>>>> I'm trying to read the attached hdf5 file but I get a segmentation
>>>>>>>> fault. Is it because of the size which is roughly 1.5 gb?
>>>>>>>> Even when I try ncl_filedump, I get the same error message.
>>>>>>>> I'd appreciate any help or suggestions.
>>>>>>>>
>>>>>>>> Thanks,
>>>>>>>> Nisha
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> Dr. Manisha Ganeshan
>>>>>>>> Universities Space Research Association
>>>>>>>> Maryland, U.S.A.
>>>>>>>> _______________________________________________
>>>>>>>> ncl-talk mailing list
>>>>>>>> ncl-talk at mailman.ucar.edu
>>>>>>>> List instructions, subscriber options, unsubscribe:
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>>>>>>>
>>>>>>>
>>>>>>
>>>>>> --
>>>>>> Dr. Manisha Ganeshan
>>>>>> Universities Space Research Association
>>>>>> Maryland, U.S.A.
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Dr. Manisha Ganeshan
>>>>> Universities Space Research Association
>>>>> Maryland, U.S.A.
>>>>>
>>>>
>>>
>>> --
>>> Dr. Manisha Ganeshan
>>> Universities Space Research Association
>>> Maryland, U.S.A.
>>>
>>
>>
>> --
>> Dr. Manisha Ganeshan
>> Universities Space Research Association
>> Maryland, U.S.A.
>>
>
>
> --
> Dr. Manisha Ganeshan
> Universities Space Research Association
> Maryland, U.S.A.
>


-- 
Dr. Manisha Ganeshan
Universities Space Research Association
Maryland, U.S.A.
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