[ncl-talk] trouble reading .h5 file

[Manisha Ganeshan]

Would it be a good idea to try and re-install NCL perhaps?

On Fri, Aug 21, 2020 at 4:44 PM Manisha Ganeshan <
manisha.ganeshan86 at gmail.com> wrote:

> It is failing when I type addfile(), and when I type ncl_dump, with
> "segmentation fault".
>
> On Fri, Aug 21, 2020 at 4:43 PM Manisha Ganeshan <
> manisha.ganeshan86 at gmail.com> wrote:
>
>> I'm confirming that I'm in fact using version 6.6.2 (I've checked ncl
>> -v).
>> It's odd that I'm able to read the file in another linux system which is
>> very similar to the one I'm using. Both systems have NCL version 6.6.2.
>> Unfortunately, all the data are in the first linux system, and so I'm
>> trying to find an efficient way to solve this problem.
>>
>>
>> On Fri, Aug 21, 2020 at 4:39 PM Rick Brownrigg <brownrig at ucar.edu> wrote:
>>
>>> Well I don't think the size (1.5GB) is an issue. Again, are you using an
>>> older version?
>>>
>>>     ncl -v
>>>
>>> Is it failing when you do a simple addfile()?  Or when you actually
>>> access a particular variable?
>>>
>>> On Fri, Aug 21, 2020 at 1:17 PM Manisha Ganeshan <
>>> manisha.ganeshan86 at gmail.com> wrote:
>>>
>>>> Is there any other reason it could be failing due to segmentation fault?
>>>>
>>>> On Fri, Aug 21, 2020 at 2:57 PM Manisha Ganeshan <
>>>> manisha.ganeshan86 at gmail.com> wrote:
>>>>
>>>>> Hi Rick,
>>>>>
>>>>> I'm using the same version (6.6.2). I installed using conda, and so
>>>>> far it has worked okay. I've read .he5 files using the same version.
>>>>>
>>>>> Nisha
>>>>>
>>>>> On Fri, Aug 21, 2020 at 1:54 PM Rick Brownrigg <brownrig at ucar.edu>
>>>>> wrote:
>>>>>
>>>>>> Hi Nisha,
>>>>>>
>>>>>> I was able to read that file just fine with ncl_filedump.  This is on
>>>>>> a mac using the latest version, ncl v6.6.2
>>>>>>
>>>>>> Are you using an older version of NCL?  More recent versions have
>>>>>> better and more complete support for HDF5.
>>>>>>
>>>>>> Hope that helps...
>>>>>> Rick
>>>>>>
>>>>>>
>>>>>> On Fri, Aug 21, 2020 at 11:25 AM Manisha Ganeshan via ncl-talk <
>>>>>> ncl-talk at mailman.ucar.edu> wrote:
>>>>>>
>>>>>>>  ATL09_20181016052938_02690101_002_01.h5
>>>>>>> <https://drive.google.com/file/d/1RICsYg5nwZTcVeCGJmdkvED445pQaTp6/view?usp=drive_web>
>>>>>>> Hello,
>>>>>>>
>>>>>>> I'm trying to read the attached hdf5 file but I get a segmentation
>>>>>>> fault. Is it because of the size which is roughly 1.5 gb?
>>>>>>> Even when I try ncl_filedump, I get the same error message.
>>>>>>> I'd appreciate any help or suggestions.
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Nisha
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Dr. Manisha Ganeshan
>>>>>>> Universities Space Research Association
>>>>>>> Maryland, U.S.A.
>>>>>>> _______________________________________________
>>>>>>> ncl-talk mailing list
>>>>>>> ncl-talk at mailman.ucar.edu
>>>>>>> List instructions, subscriber options, unsubscribe:
>>>>>>> https://mailman.ucar.edu/mailman/listinfo/ncl-talk
>>>>>>
>>>>>>
>>>>>
>>>>> --
>>>>> Dr. Manisha Ganeshan
>>>>> Universities Space Research Association
>>>>> Maryland, U.S.A.
>>>>>
>>>>
>>>>
>>>> --
>>>> Dr. Manisha Ganeshan
>>>> Universities Space Research Association
>>>> Maryland, U.S.A.
>>>>
>>>
>>
>> --
>> Dr. Manisha Ganeshan
>> Universities Space Research Association
>> Maryland, U.S.A.
>>
>
>
> --
> Dr. Manisha Ganeshan
> Universities Space Research Association
> Maryland, U.S.A.
>


-- 
Dr. Manisha Ganeshan
Universities Space Research Association
Maryland, U.S.A.
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