[ncl-talk] error running NCL : UTF8 Locale not supported
Heri Kuswanto
kuswanto.its82 at yahoo.com
Thu Jun 4 02:48:27 MDT 2015
Dear all,
I tried to install ncl in my WIndows system. It works but when I try to run it by writing "nedit" it give the following message " UTF8 locale not supported". Consequently, I cannot run any *.ncl command. The detail is as follows:
$ startxwin
--------------------------------------------------------------
Could not load crashreporter dll
Welcome to the XWin X Server
Vendor: The Cygwin/X Project
Release: 1.17.1.0
OS: CYGWIN_NT-6.1 ROSYIDI-PC 2.0.1(0.287/5/3) 2015-04-30 18:13 i686
OS: Windows 7 [Windows NT 6.1 build 7600] (Win32)
Package: version 1.17.1-4 built 2015-05-01
XWin was started with the following command line:
/usr/bin/XWin :0 -multiwindow -auth
/home/ROSYIDI/.serverauth.5928
Could not load crashreporter dll
(II) xorg.conf is not supported
(II) See http://x.cygwin.com/docs/faq/cygwin-x-faq.html for more information
LoadPreferences: /home/ROSYIDI/.XWinrc not found
LoadPreferences: Loading /etc/X11/system.XWinrc
LoadPreferences: Done parsing the configuration file...
winDetectSupportedEngines - DirectDraw4 installed, allowing ShadowDDNL
winDetectSupportedEngines - Returning, supported engines 00000005
winSetEngine - Multi Window or Rootless => ShadowGDI
winScreenInit - Using Windows display depth of 32 bits per pixel
winAllocateFBShadowGDI - Creating DIB with width: 1366 height: 768 depth: 32
winFinishScreenInitFB - Masks: 00ff0000 0000ff00 000000ff
winInitVisualsShadowGDI - Masks 00ff0000 0000ff00 000000ff BPRGB 8 d 24 bpp 32
MIT-SHM extension disabled due to lack of kernel support
XFree86-Bigfont extension local-client optimization disabled due to lack of shared memory support in the kernel
glWinSelectGLimplementation: Loaded 'cygnativeGLthunk.dll'
(II) AIGLX: Testing pixelFormatIndex 1
GL_VERSION: 4.1.10825 Compatibility Profile Context
GL_VENDOR: ATI Technologies Inc.
GL_RENDERER: AMD Radeon HD 6320 Graphics
(II) AIGLX: enabled GLX_SGI_make_current_read
(II) AIGLX: enabled GLX_MESA_copy_sub_buffer
(II) AIGLX: enabled GLX_SGI_swap_control and GLX_MESA_swap_control
(II) AIGLX: enabled GLX_SGIX_pbuffer
(II) AIGLX: enabled GLX_ARB_multisample and GLX_SGIS_multisample
(II) 95 pixel formats reported by wglGetPixelFormatAttribivARB
(II) AIGLX: Set GLX version to 1.4
(II) 24 fbConfigs
(II) ignored pixel formats: 0 not OpenGL, 12 RBGA float, 24 RGBA unsigned float, 0 unknown pixel type, 35 unaccelerated
(II) GLX: Initialized Win32 native WGL GL provider for screen 0
winPointerWarpCursor - Discarding first warp: 683 384
(--) 5 mouse buttons found
(--) Setting autorepeat to delay=500, rate=31
(--) Windows keyboard layout: "00000409" (00000409) "US", type 7
(--) Found matching XKB configuration "English (USA)"
(--) Model = "pc105" Layout = "us" Variant = "none" Options = "none"
Rules = "base" Model = "pc105" Layout = "us" Variant = "none" Options = "none"
winInitMultiWindowWM - DISPLAY=:0.0
winMultiWindowXMsgProc - DISPLAY=:0.0
winProcEstablishConnection - winInitClipboard returned.
winClipboardThreadProc - DISPLAY=:0.0
OS maintains clipboard viewer chain: yes
winInitMultiWindowWM - XOpenDisplay () returned and successfully opened the display.
winMultiWindowXMsgProc - XOpenDisplay () returned and successfully opened the display.
winClipboardProc - XOpenDisplay () returned and successfully opened the display.
winMultiWindowXMsgProcErrorHandler - ERROR: BadMatch (invalid parameter attributes)
---------------------------------------------------------------------------------------------------------------------------------------
$nedit
UTF8 locale not supported.
--------------
Anyone know the solution, please?
Thanks for your help.
Heri
On Thursday, June 4, 2015 1:00 AM, "ncl-talk-request at ucar.edu" <ncl-talk-request at ucar.edu> wrote:
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Today's Topics:
1. Re: exporting variables and dimensions in excel sheet
(Rick Brownrigg)
2. Re: Editing a netcdf4 file (David Brown)
3. Re: fileattdef seg fault on CESM LE files (David Brown)
4. Re: drawing RMS semi-circles in Taylor diagram (Alan Brammer)
5. Re: functions handling input of unknown dimension (Dennis Shea)
6. Re: Panel Plot (Dennis Shea)
----------------------------------------------------------------------
Message: 1
Date: Wed, 3 Jun 2015 08:07:07 -0600
From: Rick Brownrigg <brownrig at ucar.edu>
Subject: Re: [ncl-talk] exporting variables and dimensions in excel
sheet
To: amit timilsina <timilsinaamit87 at huskers.unl.edu>
Cc: "ncl-talk at ucar.edu" <ncl-talk at ucar.edu>
Message-ID:
<CAGKRhbEKr8MqfHvsaNvxCWWy8FaqA2EyTUqCUXu3Q2Jh7oOB7A at mail.gmail.com>
Content-Type: text/plain; charset="utf-8"
Hi,
Are you wanting to import these data into an Excel spreadsheet from the
NetCDF file? If using NCL for this purpose, you likely want to write a
comma-separated-file (csv), which Excel could directly import. Check out
the ascii-output examples at:
http://ncl.ucar.edu/Applications/o-ascii.shtml
particularly the write_table function.
Rick
On Wed, Jun 3, 2015 at 7:58 AM, amit timilsina <
timilsinaamit87 at huskers.unl.edu> wrote:
>
> Hello all,
> The attached file contains tasmin_diff variable, and month,lat and lon
> dimensions. Is it possible to export these all in combination in excel
> sheet? Please share link any procedure described. Thanks in advance
>
>
> Regards,
> Amit
> _______________________________________________
> ncl-talk mailing list
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Message: 2
Date: Wed, 3 Jun 2015 08:50:48 -0600
From: David Brown <dbrown at ucar.edu>
Subject: Re: [ncl-talk] Editing a netcdf4 file
To: Gerry Creager - NOAA Affiliate <gerry.creager at noaa.gov>
Cc: ncl-talk <ncl-talk at ucar.edu>
Message-ID:
<CAC92F7fVj6XAh_MEMGiS24wMMK9v13Pw-3piOcz6rvaVAofn6g at mail.gmail.com>
Content-Type: text/plain; charset=UTF-8
Hi Dustin and Gerry,
I have confirmed there is a problem. It has been partially but not
completely fixed in the development version of the code. I am looking
into the remaining issue and will let you know when it has been fixed.
-dave
On Tue, Jun 2, 2015 at 10:34 AM, Gerry Creager - NOAA Affiliate
<gerry.creager at noaa.gov> wrote:
> Additional information: If we do an addfile("<filename>","r"), we can open
> and read the file. If we use "w", well, we can open the file but assigning
> an existing variable to an internal variable fails on the assign (var =
> a->QRAIN). Of course, because it fails there, we can't see if it'd also fail
> on write.
>
> Thanks
> Gerry
>
> On Mon, Jun 1, 2015 at 7:15 PM, Gerry Creager - NOAA Affiliate
> <gerry.creager at noaa.gov> wrote:
>>
>> I've started looking at this with Dusty. Appreciate any thought you might
>> have as to why we're failing.
>>
>> I've uploaded the input file (wrfinput_d02) to the FTP incoming site. I'm
>> testing with the script:
>>
>> var = "QRAIN"
>> print(var)
>> a=addfile("wrfinput_d02.nc", "w")
>> var_orig=a->QRAIN
>> print(var_orig)
>>
>>
>> The result looks like:gerry at loki:~/NEWSe/NCL> ncl test.ncl
>> Copyright (C) 1995-2015 - All Rights Reserved
>> University Corporation for Atmospheric Research
>> NCAR Command Language Version 6.3.0
>> The use of this software is governed by a License Agreement.
>> See http://www.ncl.ucar.edu/ for more details.
>>
>>
>> Variable: var
>> Type: string
>> Total Size: 8 bytes
>> 1 values
>> Number of Dimensions: 1
>> Dimensions and sizes: [1]
>> Coordinates:
>> (0) QRAIN
>> fatal:["NclNetCDF4.c":3073]:NclNetCDF4.c: Error in nc_def_var_chunking in
>> file (wrfinput_d02.nc) for writing, at line: 3073
>>
>> line 3074 of NclNetCDF4.c: NetCDF: Attempt to define var properties, like
>> deflate, after enddef.
>>
>>
>> On Fri, May 29, 2015 at 8:54 PM, Dustan Wheatley - NOAA Affiliate
>> <dustan.wheatley at noaa.gov> wrote:
>>>
>>> I am trying to overwrite a netcdf4 file analogous to what is shown at
>>> http://www.ncl.ucar.edu/Applications/change_netCDF.shtml. In the attached
>>> ncl script, I open the file to be modified at line 35 and attempt the
>>> modification at line 73 (with a lot of calculations in between). While I
>>> have double-checked that the modified field (var_mod) has the same
>>> dimensionality as the original variable (QRAIN), I am still get a
>>> segmentation fault/core dump. Never had this problem when I tried to
>>> manipulate netcdf3 files. Could it possibly be related to the netcdf4
>>> compression? It?s possible I may be trying to do something that?s no longer
>>> possible.
>>>
>>> Thanks in advance for any suggestions.
>>>
>>> -Dusty Wheatley
>>>
>>> _______________________________________________
>>> ncl-talk mailing list
>>> ncl-talk at ucar.edu
>>> List instructions, subscriber options, unsubscribe:
>>> http://mailman.ucar.edu/mailman/listinfo/ncl-talk
>>>
>>
>>
>>
>> --
>> Gerry Creager
>> NSSL/CIMMS
>> 405.325.6371
>> ++++++++++++++++++++++
>> ?Big whorls have little whorls,
>> That feed on their velocity;
>> And little whorls have lesser whorls,
>> And so on to viscosity.?
>> Lewis Fry Richardson (1881-1953)
>
>
>
>
> --
> Gerry Creager
> NSSL/CIMMS
> 405.325.6371
> ++++++++++++++++++++++
> ?Big whorls have little whorls,
> That feed on their velocity;
> And little whorls have lesser whorls,
> And so on to viscosity.?
> Lewis Fry Richardson (1881-1953)
>
> _______________________________________________
> ncl-talk mailing list
> ncl-talk at ucar.edu
> List instructions, subscriber options, unsubscribe:
> http://mailman.ucar.edu/mailman/listinfo/ncl-talk
>
------------------------------
Message: 3
Date: Wed, 3 Jun 2015 09:36:55 -0600
From: David Brown <dbrown at ucar.edu>
Subject: Re: [ncl-talk] fileattdef seg fault on CESM LE files
To: "David B. Reusch" <dreusch at ees.nmt.edu>
Cc: NCL Talk <ncl-talk at ucar.edu>
Message-ID:
<CAC92F7dnPLD=J4_Odjydw7hkALzbn1vGoLXUHGGxhRwNpMs4CA at mail.gmail.com>
Content-Type: text/plain; charset=UTF-8
Hi David,
I want to let you know that this issue has been fixed in the
development version of NCL. Let us know if you'd like to try it out on
yellowstone.
-dave
On Tue, May 26, 2015 at 2:11 PM, Mary Haley <haley at ucar.edu> wrote:
> Hi Dave,
>
> Thanks for providing the script.
>
> I was able to reproduce your results with NCL 6.2.1, NCL 6.3.0 (both intel
> and gcc versions) and a test version of NCL, which is our development
> version. I've created a ticket, NCL-2223.
>
> If/when we get this working, I can point you to a development version that
> you can use on yellowstone.
>
> --Mary
>
>
>
> On Tue, May 26, 2015 at 11:37 AM, David B. Reusch <dreusch at ees.nmt.edu>
> wrote:
>>
>> I seem to have found an NCL seg fault when copying global attributes with
>> fileattdef from CESM Large Ensemble (LE) files. This was part of a larger
>> script I've been using to regrid for multiple years. The attached script
>> just does the fileattdef step and it works on at least one of my other,
>> non-CESM LE files. I've tried it on multiple CESM LE files with the same
>> results. Copying the attributes individually works so I'm assuming it's
>> related to doing all the attributes together.
>>
>> This is on yellowstone with NCL 6.3.
>>
>> My temporary workaround is to just comment out this step so that I can
>> continue my file processing. Since that means losing global metadata, a
>> better solution/fix would be preferred.
>>
>> Thanks,
>> Dave
>>
>> --
>> Associate Research Professor of Climatology
>> Dept of Earth and Environmental Science
>> MSEC 304; 801 Leroy Place
>> New Mexico Tech
>> Socorro, NM 87801
>>
>>
>> _______________________________________________
>> ncl-talk mailing list
>> List instructions, subscriber options, unsubscribe:
>> http://mailman.ucar.edu/mailman/listinfo/ncl-talk
>>
>
>
> _______________________________________________
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>
------------------------------
Message: 4
Date: Wed, 3 Jun 2015 11:40:14 -0400
From: Alan Brammer <abrammer at albany.edu>
Subject: Re: [ncl-talk] drawing RMS semi-circles in Taylor diagram
To: LI Qi <liqi123sh at qq.com>
Cc: ncl-talk <ncl-talk at ucar.edu>
Message-ID:
<CA+V766SnYssWRYVuoSJeQcyZz7MBYivwjTcKzBwO_=tz67qnCg at mail.gmail.com>
Content-Type: text/plain; charset="utf-8"
I would say you want to edit the constants on the below lines. I'm not
sure how these were obtained though, trial and error might be the simplest
way.
These are just restricting how long the line is, with your base plot I
would think that even your 3rd circle can span the full 180-360. Increase
0.77 and 0.61 until the circles reach a respective edge.
n3 = floattointeger( 0.77*npts )
n4 = floattointeger( 0.61*npts )
Good luck.
On 3 June 2015 at 09:43, LI Qi <liqi123sh at qq.com> wrote:
> Dear NCL developers,
>
> I use the script "taylor_diagram.ncl" to draw Taylor diagram. I extend the
> outer curve from the original 1.65 to 1.75 to fit my data, but it seems
> that the parameters w.r.t. RMS semi-circles need also be changed
> accordingly (as is shown below, the semi-circles are incomplete).
> The issue is, I have no idea how to change it.
>
>
> Below is a snippet of the script, which I guess is related to the RMS
> semi-circles
> Any hints about how to change the parameters would be sincerely
> appreciated!
>
> Best,
> Qi
>
> dx = 0.25
> ncon = 4 ; 0.75, 0.50, 0.25,
> 0.0
> npts = 100 ; arbitrary
> ang = fspan(180,360,npts)*rad
>
> dum9 = new(ncon,graphic)
>
> do n=1,ncon
> rr = n*dx ; radius from 1.0 [OBS] abscissa
> xx = 1. + rr*cos(ang)
> yy = fabs( rr*sin(ang) )
> if (n.le.2) then
> dum9(n-1) = gsn_add_polyline(wks,taylor,xx,yy,respl)
> end if
> if (n.eq.3) then
> n3 = floattointeger( 0.77*npts )
> dum9(n-1) =
> gsn_add_polyline(wks,taylor,xx(0:n3),yy(0:n3),respl)
> end if
> if (n.eq.4) then
> n4 = floattointeger( 0.61*npts )
> dum9(n-1) =
> gsn_add_polyline(wks,taylor,xx(0:n4),yy(0:n4),respl)
> end if
> end do
>
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Message: 5
Date: Wed, 3 Jun 2015 10:12:41 -0600
From: Dennis Shea <shea at ucar.edu>
Subject: Re: [ncl-talk] functions handling input of unknown dimension
To: Walter Kolczynski <walter.kolczynski at noaa.gov>
Cc: "ncl-talk at ucar.edu" <ncl-talk at ucar.edu>
Message-ID:
<CAOF1d_6MzNWNh_-eycynEZvbehBF8Z2SjJjsOAv6ND-kRbx_Lw at mail.gmail.com>
Content-Type: text/plain; charset="utf-8"
Will, Walt
To my knowledge there is no 'simple' way to do what Will originally posted.
Walt's 'flattening' suggestion would be 'clean' if it is general and hidden
with a simple interface. However, I am not sure that it would be more
efficient. More memory would be required for the 'flat' array.
--
re: WH's comment: "particularly 'clean' or efficient code"
The nested 'if' approach is certainly cumbersome
if (rankx.eq.1) then
...
end if
if (rankx.eq.2) then
...
end if
if (rankx.eq.3) then
...
end if
if (rankx.eq.4) then
...
end if
but I don't think it is particularly inefficient.
On Tue, Jun 2, 2015 at 11:09 AM, Walter Kolczynski <
walter.kolczynski at noaa.gov> wrote:
> Will,
>
> Depending on what you are doing, you might be able to flatten into a lower
> dimensional array, do whatever operation, then convert back. I've attached
> an example to get you started: it returns a random sample in the left-most
> dimension of any 2+ dimensional array. To run it just go into an
> interactive NCL session, load the file, and run the test procedure:
>
> [user at machine ~]$ ncl
> Copyright (C) 1995-2014 - All Rights Reserved
> University Corporation for Atmospheric Research
> NCAR Command Language Version 6.2.0
> The use of this software is governed by a License Agreement.
> See http://www.ncl.ucar.edu/ for more details.
> ncl 0> load "takeSample.ncl"
> ncl 1> test_takeSample()
>
> - Walter
>
>
> On 02-Jun-15 02:43, Will Hobbs wrote:
>
> Hi all
>
> I wonder if anyone has any suggestions for a generic way of writing
> functions that deal with input/output arrays which may have different
> numbers of dimensions, e.g.
>
> function generic_example(input:numeric)
>
> begin
> output = some_subset_of_(input)
>
> return(output)
> end
>
> where input/output might be 1, 2, 3, 4 or more dimensions, and so a
> different line is needed to do the subsetting step.
>
> At the moment I just use nested 'if' statements based on the rank of the
> array (where rank is the number of dimensions, i.e. dimsizes(dim
> sizes(input)), and this works fine. But, it does not make for particularly
> 'clean' or efficient code, so I wonder if anyone has any nicer ways of
> doing this.
>
> Many thanks
>
> Will
>
>
>
> University of Tasmania Electronic Communications Policy (December, 2014).
> This email is confidential, and is for the intended recipient only.
> Access, disclosure, copying, distribution, or reliance on any of it by
> anyone outside the intended recipient organisation is prohibited and may be
> a criminal offence. Please delete if obtained in error and email
> confirmation to the sender. The views expressed in this email are not
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> intended otherwise.
>
>
> _______________________________________________
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>
>
> --
> Walter Kolczynski, Jr.
> Global Ensemble Team
> NOAA/NWS/NCEP/EMC (via I.M. Systems Group)(301) 683-3781
>
>
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Message: 6
Date: Wed, 3 Jun 2015 11:33:33 -0600
From: Dennis Shea <shea at ucar.edu>
Subject: Re: [ncl-talk] Panel Plot
To: Amadou Coulibaly <mpapin24 at gmail.com>
Cc: "ncl-talk at ucar.edu" <ncl-talk at ucar.edu>
Message-ID:
<CAOF1d_62pZAVQ=MtHYNicnQdtdatfet_kKH7yee363+wkTM_+w at mail.gmail.com>
Content-Type: text/plain; charset="utf-8"
Looking at scripts can be a tedious and time consuming task.
--
Your code
infile = addfile("/home/amadou/NCL/all_new.nc", "r")
temp = infile->air_temperature
Temp = temp(256392:258575,7) ; for 5 years
(2012_JFMAMJ)
time = infile->time
Time = time(256392:258575)
index = ind(Temp(:) .ne. Temp at _FillValue) ; indices of
Temp without missing values
printVarSummary(index)
Time0 = time(256444:258575)
Temp1 = new((/2132/), float)
Temp1 = Temp(index)
[snip]
[1] You can **not** use the following to check for missing values. These
can *only* be checked via the 'ismissing' function.
index = ind(Temp(:) .ne. Temp at _FillValue) ; indices
of Temp without missing values
Use
index = ind(.not.ismissing(Temp)) ; indices of Temp without missing
values
https://www.ncl.ucar.edu/Document/Functions/Built-in/ismissing.shtml
https://www.ncl.ucar.edu/Document/Functions/Built-in/ind.shtml
[2]
As I mentioned to you in a previous ncl-talk response, you can not just
eliminate missing values and perform a wavelet analysis on the 'good'
values. Omitting values will result in 'numbers' but they are not the
'correct numbers'. Omitting values results in spectral gaps. If you have
(say) hourly values and very short spans with missing values you could
perform a linear interpolation. This will affect the spectra but likely not
in any substantive manner.
[3]
You have two different sets of index values: 256392:258575 and
256444:258575 ... this is likely the source of your plotting issue.
Good programming practice suggest that you use variables rather than hard
wired constants.
tStrt = 256392
tLast = 258575
and use these
temp = infile->air_temperature
Temp = temp(tStrt:tLast,7) ; for 5 years
(2012_JFMAMJ)
time = infile->time
Time = time(tStrt:tLast)
Actually .... better
Temp = infile->air_temperature(tStrt:tLast,7)
printVarSummary(Temp)
On Wed, Jun 3, 2015 at 6:00 AM, Amadou Coulibaly <mpapin24 at gmail.com> wrote:
> Dear NCL users,
>
> I tried to do a panel plot between "Wavelet Power Spectrum" and "Timesires"
> from hourly temperature data of April-May-June. But this data contained 61
> hours of missing values that I cancelled. When I plotted my data, I
> remarked that the x-axis on the wavelet power spectrum does not match the
> timeserie one.
>
> What is wrong with my script?
>
> Please find attached my script and my plot.
>
> Best
> --
> * COULIBALY AMADOU *
> PhD Student on West African Climate System (WACS)
> FUTA - Federal University of Technology of Akure, Nigeria
>
> *Visiting Student - *
> *University of Cologne, Germany**Institute of Geophysics and Meteorology*
> Pohligstr. 3 / Office 3.102
> D-50969 K?ln
>
> *Project*: WASCAL (West African Science Service Centre on Climate Change
> and Adapted Land Use)
> Phone:(+234) 810 795 2836 /(+223) 65 67 27 57 /(+226) 64 57 37 27 /+49
> 15218352574
>
> E-mail: mpapin24 at gmail.com / coulibalya68 at yahoo.com
>
> "*The time is always right to do right": Nelson Mandela*
>
> *"Character is like a tree and reputation like a shadow. The shadow is
> what we think of it; the tree is the real thing" : Abraham Lincoln*
>
> *"Do what you can, with what you have, where you are" Theodore Roosevelt*
>
>
>
>
>
>
> _______________________________________________
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