[ncl-talk] Interesting error

[Gerry Creager - NOAA Affiliate]

We attempted to run the attached script against a wrfout, and see the
following error:

Warning! ***HDF5 library version mismatched error***
The HDF5 header files used to compile this application do not match
the version used by the HDF5 library to which this application is linked.
Data corruption or segmentation faults may occur if the application
continues.
This can happen when an application was compiled by one version of HDF5 but
linked with a different version of static or shared HDF5 library.
You should recompile the application or check your shared library related
settings such as 'LD_LIBRARY_PATH'.
You can, at your own risk, disable this warning by setting the environment
variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.
Setting it to 2 or higher will suppress the warning messages totally.
Headers are 1.8.5, library is 1.8.13
    SUMMARY OF THE HDF5 CONFIGURATION
    =================================

General Information:
-------------------
   HDF5 Version: 1.8.13
  Configured on: Sun Aug 31 08:57:09 MDT 2014
  Configured by: haley at k5
 Configure mode: production
    Host system: i686-pc-linux-gnu
      Uname information: Linux k5 2.6.18-371.9.1.el5 #1 SMP Tue May 13
06:54:02 EDT 2014 i686 i686 i386 GNU/Linux
       Byte sex: little-endian
      Libraries: static
     Installation point: /d2/haley/external

Compiling Options:
------------------
               Compilation Mode: production
                     C Compiler: /usr/bin/gcc ( gcc (GCC) 4.1.2 20080704 )
                         CFLAGS: -fPIC
                      H5_CFLAGS: -std=c99 -pedantic -Wall -Wextra -Wundef
-Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align
-Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes
-Wmissing-prototypes -Wmissing-declarations -Wredundant-decls
-Wnested-externs -Winline -Wno-long-long -Wfloat-equal
-Wmissing-format-attribute -Wmissing-noreturn -Wpacked
-Wdisabled-optimization -Wformat=2 -Wunreachable-code -Wendif-labels
-Wdeclaration-after-statement -Wold-style-definition -Winvalid-pch
-Wvariadic-macros -Wnonnull -Winit-self -Wmissing-include-dirs
-Wswitch-default -Wswitch-enum -Wunused-macros -Wunsafe-loop-optimizations
-Wc++-compat -Wvolatile-register-var -O3 -fomit-frame-pointer
-finline-functions
                      AM_CFLAGS:
                       CPPFLAGS: -D_FILE_OFFSET_BITS=64
-D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE
                    H5_CPPFLAGS: -D_POSIX_C_SOURCE=199506L   -DNDEBUG
-UH5_DEBUG_API
                    AM_CPPFLAGS: -I/d2/haley/external/include
-I/d2/haley/external/include -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-D_BSD_SOURCE
               Shared C Library: no
               Static C Library: yes
  Statically Linked Executables: no
                        LDFLAGS:
                     H5_LDFLAGS:
                     AM_LDFLAGS:  -L/d2/haley/external/lib
-L/d2/haley/external/lib
   Extra libraries:  -lsz -lz -lrt -ldl -lm
        Archiver: ar
   Ranlib: ranlib
       Debugged Packages:
    API Tracing: no

Languages:
----------
                        Fortran: no

                            C++: no

Features:
---------
                  Parallel HDF5: no
             High Level library: yes
                   Threadsafety: no
            Default API Mapping: v18
 With Deprecated Public Symbols: yes
         I/O filters (external): deflate(zlib),szip(encoder)
         I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset
                            MPE: no
                     Direct VFD: no
                        dmalloc: no
Clear file buffers before write: yes
           Using memory checker: no
         Function Stack Tracing: no
      Strict File Format Checks: no
   Optimization Instrumentation: no
       Large File Support (LFS): yes
Bye...
Abort (core dumped)


I'll upload some sample wrfouts so you can see what the input files look
like.

Thanks
Gerry
-- 
Gerry Creager
NSSL/CIMMS
405.325.6371
++++++++++++++++++++++
“Big whorls have little whorls,
That feed on their velocity;
And little whorls have lesser whorls,
And so on to viscosity.”
Lewis Fry Richardson (1881-1953)
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