[Wrf-users] Segmentation fault (core dumped) after wf.exe
黄小仙儿
313695096 at qq.com
Mon Mar 3 19:07:06 MST 2014
Hi!
I'm trying to run WRF with fnl data. WPS ,real.exe runs well, but when I run wrf.exe after'ulimit -s unlimited'(which I saw in some forums that may slove this problem,but it's not )
It's appeared 'Segmentation fault (core dumped)'
I have changed my WRF edition,my time-step,but did not help.
this is my rslerror report:
taskid: 0 hostname: node253
Error reading namelist &logging from namelist.input. Using default logging config.
Namelist dfi_control not found in namelist.input. Using registry defaults for variables in dfi_control
Namelist tc not found in namelist.input. Using registry defaults for variables in tc
Namelist noah_mp not found in namelist.input. Using registry defaults for variables in noah_mp
Namelist scm not found in namelist.input. Using registry defaults for variables in scm
Namelist fire not found in namelist.input. Using registry defaults for variables in fire
Namelist diags not found in namelist.input. Using registry defaults for variables in diags
Ntasks in X 1 , ntasks in Y 1
--- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and auxinput4_interval = 0 for all domains
--- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and auxinput4_interval = 0 for all domains
--- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and auxinput4_interval = 0 for all domains
--- NOTE: grid_fdda is 0 for domain 1, setting gfdda interval and ending time to 0 for that domain.
--- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain 1, setting sgfdda interval and ending time to 0 for that domain.
--- NOTE: obs_nudge_opt is 0 for domain 1, setting obs nudging interval and ending time to 0 for that domain.
--- NOTE: grid_fdda is 0 for domain 2, setting gfdda interval and ending time to 0 for that domain.
--- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain 2, setting sgfdda interval and ending time to 0 for that domain.
--- NOTE: obs_nudge_opt is 0 for domain 2, setting obs nudging interval and ending time to 0 for that domain.
--- NOTE: grid_fdda is 0 for domain 3, setting gfdda interval and ending time to 0 for that domain.
--- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain 3, setting sgfdda interval and ending time to 0 for that domain.
--- NOTE: obs_nudge_opt is 0 for domain 3, setting obs nudging interval and ending time to 0 for that domain.
bl_pbl_physics /= 4, implies mfshconv must be 0, resetting
--- NOTE: num_soil_layers has been set to 4
WRF V3.4.1 MODEL
*************************************
Parent domain
ids,ide,jds,jde 1 155 1 100
ims,ime,jms,jme -4 160 -4 105
ips,ipe,jps,jpe 1 155 1 100
*************************************
DYNAMICS OPTION: Eulerian Mass Coordinate
alloc_space_field: domain 1 , 335477712 bytes allocated
med_initialdata_input: calling input_input
Timing for processing wrfinput file (stream 0) for domain 1: 0.13950 elapsed seconds
INPUT LandUse = "USGS"
LANDUSE TYPE = "USGS" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 16 SNOW CATEGORY = 24
INITIALIZE THREE Noah LSM RELATED TABLES
LANDUSE TYPE = USGS FOUND 27 CATEGORIES
INPUT SOIL TEXTURE CLASSIFICATION = STAS
SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES
*************************************
Nesting domain
ids,ide,jds,jde 1 298 1 166
ims,ime,jms,jme -4 303 -4 171
ips,ipe,jps,jpe 1 298 1 166
INTERMEDIATE domain
ids,ide,jds,jde 32 136 21 81
ims,ime,jms,jme 27 141 16 86
ips,ipe,jps,jpe 30 138 19 83
*************************************
d01 2010-07-24_12:00:00 alloc_space_field: domain 2 , 993394400 bytes allocated
d01 2010-07-24_12:00:00 alloc_space_field: domain 2 , 29589960 bytes allocated
d01 2010-07-24_12:00:00 *** Initializing nest domain # 2 from an input file. ***
d01 2010-07-24_12:00:00 med_initialdata_input: calling input_input
Timing for processing wrfinput file (stream 0) for domain 2: 0.39943 elapsed seconds
INPUT LandUse = "USGS"
LANDUSE TYPE = "USGS" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 16 SNOW CATEGORY = 24
INITIALIZE THREE Noah LSM RELATED TABLES
LANDUSE TYPE = USGS FOUND 27 CATEGORIES
INPUT SOIL TEXTURE CLASSIFICATION = STAS
SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES
INPUT LandUse = "USGS"
LANDUSE TYPE = "USGS" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 16 SNOW CATEGORY = 24
INITIALIZE THREE Noah LSM RELATED TABLES
LANDUSE TYPE = USGS FOUND 27 CATEGORIES
INPUT SOIL TEXTURE CLASSIFICATION = STAS
SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES
INPUT LandUse = "USGS"
LANDUSE TYPE = "USGS" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 16 SNOW CATEGORY = 24
INITIALIZE THREE Noah LSM RELATED TABLES
LANDUSE TYPE = USGS FOUND 27 CATEGORIES
INPUT SOIL TEXTURE CLASSIFICATION = STAS
SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES
Timing for Writing wrfout_d01_2010-07-24_12:00:00 for domain 1: 0.22706 elapsed seconds
Timing for processing lateral boundary for domain 1: 0.02146 elapsed seconds
WRF TILE 1 IS 1 IE 155 JS 1 JE 100
WRF NUMBER OF TILES = 1
*************************************
Nesting domain
ids,ide,jds,jde 1 199 1 199
ims,ime,jms,jme -4 204 -4 204
ips,ipe,jps,jpe 1 199 1 199
INTERMEDIATE domain
ids,ide,jds,jde 98 169 65 136
ims,ime,jms,jme 93 174 60 141
ips,ipe,jps,jpe 96 171 63 138
*************************************
d02 2010-07-24_12:00:00 alloc_space_field: domain 3 , 801206228 bytes allocated
d02 2010-07-24_12:00:00 alloc_space_field: domain 3 , 24367776 bytes allocated
d02 2010-07-24_12:00:00 *** Initializing nest domain # 3 from an input file. ***
d02 2010-07-24_12:00:00 med_initialdata_input: calling input_input
Timing for processing wrfinput file (stream 0) for domain 3: 0.31741 elapsed seconds
INPUT LandUse = "USGS"
LANDUSE TYPE = "USGS" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 16 SNOW CATEGORY = 24
INITIALIZE THREE Noah LSM RELATED TABLES
LANDUSE TYPE = USGS FOUND 27 CATEGORIES
INPUT SOIL TEXTURE CLASSIFICATION = STAS
SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES
INPUT LandUse = "USGS"
LANDUSE TYPE = "USGS" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 16 SNOW CATEGORY = 24
INITIALIZE THREE Noah LSM RELATED TABLES
LANDUSE TYPE = USGS FOUND 27 CATEGORIES
INPUT SOIL TEXTURE CLASSIFICATION = STAS
SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES
INPUT LandUse = "USGS"
LANDUSE TYPE = "USGS" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 16 SNOW CATEGORY = 24
INITIALIZE THREE Noah LSM RELATED TABLES
LANDUSE TYPE = USGS FOUND 27 CATEGORIES
INPUT SOIL TEXTURE CLASSIFICATION = STAS
SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES
Timing for Writing wrfout_d02_2010-07-24_12:00:00 for domain 2: 0.60938 elapsed seconds
WRF TILE 1 IS 1 IE 298 JS 1 JE 166
WRF NUMBER OF TILES = 1
Timing for Writing wrfout_d03_2010-07-24_12:00:00 for domain 3: 0.83859 elapsed seconds
WRF TILE 1 IS 1 IE 199 JS 1 JE 199
WRF NUMBER OF TILES = 1
Timing for main: time 2010-07-24_12:00:06 on domain 3: 35.15054 elapsed seconds
Timing for main: time 2010-07-24_12:00:13 on domain 3: 9.23408 elapsed seconds
Timing for main: time 2010-07-24_12:00:20 on domain 3: 9.23893 elapsed seconds
Timing for main: time 2010-07-24_12:00:20 on domain 2: 110.41324 elapsed seconds
Timing for main: time 2010-07-24_12:00:26 on domain 3: 9.41442 elapsed seconds
Timing for main: time 2010-07-24_12:00:33 on domain 3: 9.49369 elapsed seconds
d03 2010-07-24_12:00:33+01/03 2 points exceeded cfl=2 in domain d03 at time 2010-07-24_12:00:33+01/03 hours
d03 2010-07-24_12:00:33+01/03 MAX AT i,j,k: 14 78 3 vert_cfl,w,d(eta)= 2.552612 -8.353512 1.2999952E-02
d03 2010-07-24_12:00:33+01/03 1 points exceeded cfl=2 in domain d03 at time 2010-07-24_12:00:33+01/03 hours
d03 2010-07-24_12:00:33+01/03 MAX AT i,j,k: 15 78 4 vert_cfl,w,d(eta)= 2.070671 -10.60723 1.6000032E-02
d03 2010-07-24_12:00:33+01/03 3 points exceeded cfl=2 in domain d03 at time 2010-07-24_12:00:33+01/03 hours
d03 2010-07-24_12:00:33+01/03 MAX AT i,j,k: 14 78 3 vert_cfl,w,d(eta)= 3.646949 2.102756 1.2999952E-02
Timing for main: time 2010-07-24_12:00:40 on domain 3: 9.25906 elapsed seconds
Timing for main: time 2010-07-24_12:00:40 on domain 2: 40.73580 elapsed seconds
d03 2010-07-24_12:00:40 12 points exceeded cfl=2 in domain d03 at time 2010-07-24_12:00:40 hours
d03 2010-07-24_12:00:40 MAX AT i,j,k: 15 78 3 vert_cfl,w,d(eta)= 9.801180 -178.9584 1.2999952E-02
Timing for main: time 2010-07-24_12:00:46 on domain 3: 9.44992 elapsed seconds
Timing for main: time 2010-07-24_12:00:53 on domain 3: 9.24083 elapsed seconds
Timing for main: time 2010-07-24_12:01:00 on domain 3: 9.18202 elapsed seconds
Timing for main: time 2010-07-24_12:01:00 on domain 2: 40.72570 elapsed seconds
Timing for main: time 2010-07-24_12:01:00 on domain 1: 222.31177 elapsed seconds
Timing for main: time 2010-07-24_12:01:06 on domain 3: 8.76295 elapsed seconds
Timing for main: time 2010-07-24_12:01:13 on domain 3: 8.75216 elapsed seconds
Timing for main: time 2010-07-24_12:01:20 on domain 3: 8.57600 elapsed seconds
Timing for main: time 2010-07-24_12:01:20 on domain 2: 38.95906 elapsed seconds
Timing for main: time 2010-07-24_12:01:26 on domain 3: 8.28804 elapsed seconds
Timing for main: time 2010-07-24_12:01:33 on domain 3: 8.08243 elapsed seconds
Timing for main: time 2010-07-24_12:01:40 on domain 3: 7.70439 elapsed seconds
Timing for main: time 2010-07-24_12:01:40 on domain 2: 36.57794 elapsed seconds
Timing for main: time 2010-07-24_12:01:46 on domain 3: 7.46489 elapsed seconds
Timing for main: time 2010-07-24_12:01:53 on domain 3: 7.35110 elapsed seconds
Timing for main: time 2010-07-24_12:02:00 on domain 3: 7.17819 elapsed seconds
Timing for main: time 2010-07-24_12:02:00 on domain 2: 34.03367 elapsed seconds
Timing for main: time 2010-07-24_12:02:00 on domain 1: 115.10924 elapsed seconds
Timing for main: time 2010-07-24_12:02:06 on domain 3: 7.10715 elapsed seconds
Timing for main: time 2010-07-24_12:02:13 on domain 3: 7.34629 elapsed seconds
Timing for main: time 2010-07-24_12:02:20 on domain 3: 7.32600 elapsed seconds
Timing for main: time 2010-07-24_12:02:20 on domain 2: 33.30775 elapsed seconds
Timing for main: time 2010-07-24_12:02:26 on domain 3: 7.10627 elapsed seconds
Timing for main: time 2010-07-24_12:02:33 on domain 3: 7.36773 elapsed seconds
Timing for main: time 2010-07-24_12:02:40 on domain 3: 7.32440 elapsed seconds
Timing for main: time 2010-07-24_12:02:40 on domain 2: 33.01704 elapsed seconds
Timing for main: time 2010-07-24_12:02:46 on domain 3: 7.11791 elapsed seconds
Timing for main: time 2010-07-24_12:02:53 on domain 3: 7.07741 elapsed seconds
Timing for main: time 2010-07-24_12:03:00 on domain 3: 7.27988 elapsed seconds
Timing for main: time 2010-07-24_12:03:00 on domain 2: 32.79266 elapsed seconds
Timing for main: time 2010-07-24_12:03:00 on domain 1: 104.48520 elapsed seconds
Timing for main: time 2010-07-24_12:03:06 on domain 3: 7.16148 elapsed seconds
Timing for main: time 2010-07-24_12:03:13 on domain 3: 7.14080 elapsed seconds
Timing for main: time 2010-07-24_12:03:20 on domain 3: 7.09691 elapsed seconds
Timing for main: time 2010-07-24_12:03:20 on domain 2: 32.50908 elapsed seconds
Timing for main: time 2010-07-24_12:03:26 on domain 3: 7.33572 elapsed seconds
Timing for main: time 2010-07-24_12:03:33 on domain 3: 7.17682 elapsed seconds
Timing for main: time 2010-07-24_12:03:40 on domain 3: 7.09512 elapsed seconds
Timing for main: time 2010-07-24_12:03:40 on domain 2: 32.73033 elapsed seconds
Timing for main: time 2010-07-24_12:03:46 on domain 3: 7.27958 elapsed seconds
Timing for main: time 2010-07-24_12:03:53 on domain 3: 7.37044 elapsed seconds
Timing for main: time 2010-07-24_12:04:00 on domain 3: 7.13265 elapsed seconds
Timing for main: time 2010-07-24_12:04:00 on domain 2: 32.44231 elapsed seconds
Timing for main: time 2010-07-24_12:04:00 on domain 1: 102.86776 elapsed seconds
[node253:15114] *** Process received signal ***
[node253:15114] Signal: Segmentation fault (11)
[node253:15114] Signal code: Address not mapped (1)
[node253:15114] Failing at address: 0x7aff000
this is my namelist.wps:&share
wrf_core = 'ARW',
max_dom = 3,
start_date = '2010-07-24_12:00:00','2010-07-24_12:00:00','2010-07-24_12:00:00',
end_date = '2010-07-25_00:00:00','2010-07-25_00:00:00','2010-07-25_00:00:00',
interval_seconds = 21600,
io_form_geogrid = 2,
opt_output_from_geogrid_path='/home/xiangg/wrf/wrfoutsc/555/'
debug_level=0,
/
&geogrid
parent_id = 1, 1, 2,
parent_grid_ratio = 1, 3, 3,
i_parent_start = 1, 34, 100,
j_parent_start = 1, 23 , 67 ,
s_we = 1, 1, 1,
e_we = 155 , 298 ,199 ,
s_sn = 1, 1, 1,
e_sn = 100 , 166 ,199 ,
geog_data_res = '10m', '2m', '30s',
dx = 10000,
dy = 10000,
map_proj = 'lambert',
ref_lat = 30.50,
ref_lon = 104.00,
truelat1 = 30.0,
truelat2 = 60.0,
stand_lon = 104.00,
geog_data_path = '/home/xiangg/wrf/geog'
/
&ungrib
out_format = 'WPS',
prefix = 'FILE',
/
&metgrid
fg_name = 'FILE'
io_form_metgrid = 2,
opt_output_from_metgrid_path='/home/xiangg/wrf/WRFV3/run/'
/
This is my namelist.input：
&time_control
run_days = 0,
run_hours = 12,
run_minutes = 0,
run_seconds = 0,
start_year = 2010, 2010, 2010,
start_month = 07, 07 , 07,
start_day = 24, 24, 24,
start_hour = 12, 12, 12,
start_minute = 00, 00, 00,
start_second = 00, 00, 00,
end_year = 2010, 2010, 2010,
end_month =07, 07, 07,
end_day = 25, 25, 25,
end_hour =00, 00 , 00 ,
end_minute = 00, 00, 00,
end_second = 00, 00, 00,
interval_seconds = 21600
input_from_file = .true.,.true.,.true.,
history_interval = 180, 60, 10,
frames_per_outfile = 1000, 1000, 1000,
restart = .false.,
restart_interval = 5000,
io_form_history = 2
io_form_restart = 2
io_form_input = 2
io_form_boundary = 2
debug_level = 0
/
&domains
time_step = 60,
time_step_fract_num = 0,
time_step_fract_den = 1,
max_dom = 3,
e_we =155,298 , 199 ,
e_sn = 100, 166, 199,
e_vert = 28, 28, 28,
p_top_requested = 5000,
num_metgrid_levels = 27,
num_metgrid_soil_levels = 4,
dx = 10000,3333.33 , 1111.11 ,
dy = 10000,3333.33 , 1111.11 ,
grid_id = 1, 2, 3,
parent_id = 0, 1, 2,
i_parent_start = 1, 34 , 100 ,
j_parent_start = 1, 23 , 67 ,
parent_grid_ratio = 1, 3, 3,
parent_time_step_ratio = 1, 3, 3,
feedback = 1,
smooth_option = 0
/
&physics
mp_physics =6, 6, 6,
ra_lw_physics = 1, 1, 1,
ra_sw_physics = 1, 1, 1,
radt = 10, 10, 10,
sf_sfclay_physics = 1, 1, 1,
sf_surface_physics = 2, 2, 2,
bl_pbl_physics = 1, 1, 1,
bldt = 0, 0, 0,
cu_physics = 1, 1, 1,
cudt = 5, 5, 5,
isfflx = 1,
ifsnow = 0,
icloud = 1,
surface_input_source = 1,
num_soil_layers = 4,
sf_urban_physics = 0, 0, 0,
/
&fdda
/
&dynamics
w_damping = 0,
diff_opt = 1,
km_opt = 4,
diff_6th_opt = 0, 0, 0,
diff_6th_factor = 0.12, 0.12, 0.12,
base_temp = 290.
damp_opt = 0,
zdamp = 5000., 5000., 5000.,
dampcoef = 0.2, 0.2, 0.2
khdif = 0, 0, 0,
kvdif = 0, 0, 0,
non_hydrostatic = .true., .true., .true.,
moist_adv_opt = 1, 1, 1,
scalar_adv_opt = 1, 1, 1,
/
&bdy_control
spec_bdy_width = 5,
spec_zone = 1,
relax_zone = 4,
specified = .true., .false.,.false.,
nested = .false., .true., .true.,
/
&grib2
/
&namelist_quilt
nio_tasks_per_group = 0,
nio_groups = 1,
/
could you please give me some advice?
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