[ncl-talk] Problem with ESMF_RegridWeightGen
Felix Carrasco
felix.carrasco at cima.fcen.uba.ar
Thu Apr 5 12:24:30 MDT 2018
Thanks Mary!
It worked perfectly. Effectively the PATH for anaconda was first, so it
was looking for that Binary. As soon as I correct my .bashrc file adding
the NCL bin, solved the problem.
Thanks again.
Best regards.
---
-------------------------------------
Felix Carrasco
Estudiante Doctorado UBA
Centro de investigaciones del mar y la atmosfera
Universidad de Buenos Aires
Dirección:
Intendente Guiraldes 2160 - Ciudad Universitaria
Pabellón II - 2do. piso
Buenos Aires - Argentina
Código Postal: C1428EGA
Teléfono: (54)(11) 4787-2693 - (54)(11) 4576-3300/09 Ext. 388
FAX: (54)(11) 4788-3572
On 05.04.2018 14:59, Mary Haley wrote:
> Felix,
>
> FYI: you don't need to set all of these:
>
> NCARG_FONTCAPS=/home/felix.carrasco/NCL/lib/ncarg/fontcaps
> NCARG_GRAPHCAPS=/home/felix.carrasco/NCL/lib/ncarg/graphcaps
> NCARG_DATABASE=/home/felix.carrasco/NCL/lib/ncarg/database
>
> NCARG_LIB=/home/felix.carrasco/NCL/lib/ncarg
> NCARG_NCARG=/home/felix.carrasco/NCL/lib/ncarg
>
> because they will be found automatically simply by the fact you set:
>
> NCARG_ROOT=/home/felix.carrasco/NCL
>
> There are two possible reasons why the ESMF_RegridWeightGen is trying
> to get picked up from the anaconda directory.
>
> One is that /opt/anaconda2/bin may be on your search path before
> /home/felix.carrasco/NCL/bin.
>
> The other is that you may have the environment variable ESMFBINDIR set
> to /opt/anaconda2.
>
> To check your PATH, type:
>
> echo $PATH
>
> If the /opt/anaconda2 path is first, then fix this in your appropriate
> /home/felix.carrasco/.XXXX file where PATH is being set. You will need
> to log out and log back in for this to take effect.
>
> If ESMFBINDIR is set to the anaconda2 path, then again, you will need
> to fix this in your appropriate .XXXX file.
>
> I recommend not setting it at all, as long as $NCARG_ROOT/bin is on
> your search PATH before /opt/anaconda2/bin. Or, you can try setting it
> to /home/felix.carrasco/NCL/bin, but I don't like this solution
> because if you install NCL to a different location, you will need to
> remember to change this setting.
>
> --Mary
>
> On Thu, Apr 5, 2018 at 11:29 AM, Felix Carrasco
> <felix.carrasco at cima.fcen.uba.ar> wrote:
>
>> Thanks for the reply Mary,
>>
>> Here are the output from the commands you suggest:
>>
>> [felix.carrasco at tupa ncl_scripts]$ which ncl
>> ~/NCL/bin/ncl
>> [felix.carrasco at tupa ncl_scripts]$ ncl -V
>> 6.4.0
>> [felix.carrasco at tupa ncl_scripts]$ env | grep NCARG
>> NCARG_FONTCAPS=/home/felix.carrasco/NCL/lib/ncarg/fontcaps
>> NCARG_GRAPHCAPS=/home/felix.ca [1]rrasco/NCL/lib/ncarg/graphcaps
>> NCARG_ROOT=/home/felix.carrasco/NCL
>> NCARG_DATABASE=/home/felix.carrasco/NCL/lib/ncarg/database
>> NCARG_LIB=/home/felix.carrasco/NCL/lib/ncarg
>> NCARG_NCARG=/home/felix.carrasco/NCL/lib/ncarg
>> [felix.carrasco at tupa ncl_scripts]$ which ESMF_RegridWeightGen
>> /opt/anaconda2/bin/ESMF_RegridWeightGen
>>
>> As it can be noticed, it's trying to use the bin from the Anaconda
>> installation and not the one from the NCARG installation.
>>
>> I try to run the script using:
>>
>> /home/felix.carrasco/NCL/bin/ncl interpolate_coemis_hourly.ncl
>>
>> but it gave the same mistake.
>>
>> Any suggestion on how to force to ncl to use the appropiate bin?
>>
>> Thanks in advance.
>> ---
>> -------------------------------------
>> Felix Carrasco
>>
>> Estudiante Doctorado UBA
>> Centro de investigaciones del mar y la atmosfera
>> Universidad de Buenos Aires
>> Dirección:
>> Intendente Guiraldes 2160 [2] - Ciudad Universitaria
>> Pabellón II - 2do. piso
>> Buenos Aires - Argentina
>> Código Postal: C1428EGA
>> Teléfono: (54)(11) 4787-2693 - (54)(11) 4576-3300/09 Ext. 388
>> FAX: (54)(11) 4788-3572
>>
>> On 05.04.2018 14:01, Mary Haley wrote:
>>
>> Hi Felix,
>>
>> If it can't find the ESMF_RegridWeightGen executable, then this
>> would
>> usually mean that $NCARG_ROOT/bin is not on your search path.
>> However, as you pointed out, the NCL binary that you downloaded has
>> this executable included with it, so something else is going on with
>> your environment.
>>
>> My guess is that you may be using a different version of NCL than
>> what
>> you think, or else $NCARG_ROOT/bin is NOT on your search path, and
>> you
>> are executing NCL by explicitly giving it the full path to the NCL
>> executable, i.e.:
>>
>> /xxxx/yyyy/bin/ncl my_script.ncl
>>
>> I need to know how your environment is set up and how you are
>> executing NCL. On the UNIX command, before you run your script, can
>> you type the following four commands and send the output to
>> ncl-talk:
>>
>> which ncl
>> ncl -V
>> env | grep NCARG
>> which ESMF_RegridWeightGen
>>
>> Then, also tell
>> us how you are running "ncl". That is, are you typing:
>>
>> ncl my_script.ncl
>>
>> or
>>
>> /xxxxx/yyyy/bin/my_script.ncl
>>
>> where /xxxx/yyyy is the path that NCARG_ROOT is set to?
>>
>> --Mary
>>
>> On Wed, Apr 4, 2018 at 2:53 PM, Felix Carrasco
>> <felix.carrasco at cima.fcen.uba.ar> wrote:
>>
>> Hi NCL-Talk,
>>
>> i was trying to interpolate using the ESMF_regrid_gen_weights
>> function. But it send me this message:
>>
>> (0) get_src_grid_info: source lat dims = (85,85)
>> (0) get_src_grid_info: source lon dims = (85,85)
>> (0) get_src_grid_info: source grid type is 'curvilinear'
>> (0) curvilinear_to_SCRIP: calculating grid corners...
>> (0) curvilinear_to_SCRIP: no lat values are at the poles, so
>> (0) calculating grid corners using
>> (0) calc_SCRIP_corners_noboundaries...
>> (0) calc_SCRIP_corners_noboundaries
>> (0) min/max original lat: -35.0214/-34.2646
>> (0) min/max original lon: -58.8845/-57.9605
>> (0) calc_SCRIP_corners_noboundaries
>> (0) min/max Extlat2d: -35.0304/-34.2556
>> (0) min/max Extlon2d: -58.8956/-57.9494
>> (0) calc_SCRIP_corners_noboundaries
>> (0) min/max ExtGridCenter_lat: -35.0259/-34.2601
>> (0) min/max ExtGridCenter_lon: -58.8901/-57.9549
>> (0) =====> CPU Elapsed Time: curvilinear_to_SCRIP: 0.0159969
>> seconds <=====
>> (0) get_dst_grid_info: destination lat dims = (100,110)
>> (0) get_dst_grid_info: destination lon dims = (100,110)
>> (0) curvilinear_to_SCRIP: calculating grid corners...
>> (0) curvilinear_to_SCRIP: no lat values are at the poles, so
>> (0) calculating grid corners using
>> (0) calc_SCRIP_corners_noboundaries...
>> (0) calc_SCRIP_corners_noboundaries
>> (0) min/max original lat: -36.8259/-32.3388
>> (0) min/max original lon: -61.4592/-55.3408
>> (0) calc_SCRIP_corners_noboundaries
>> (0) min/max Extlat2d: -36.8709/-32.2926
>> (0) min/max Extlon2d: -61.517/-55.283
>> (0) calc_SCRIP_corners_noboundaries
>> (0) min/max ExtGridCenter_lat: -36.8484/-32.3157
>> (0) min/max ExtGridCenter_lon: -61.4881/-55.3119
>> (0) =====> CPU Elapsed Time: curvilinear_to_SCRIP: 0.020998
>> seconds <=====
>> (0) ESMF_regrid_gen_weights: could not find ESMF_RegridWeightGen
>> executable.
>>
>> and it's not working, because I iterate over a series files using
>> this weights generated by this function.
>>
>> I found an old email from 2013 here:
>>
>> https://www.ncl.ucar.edu/Support/talk_archives/2013/3957.html [3]
>> [1]
>>
>> but as it suggested right there I do find the ESMF_RegridWeightGen
>> in the $NCARG_ROOT/bin/ folder (also check the setting of NCARG_ROOT
>> and is fine. So I decided to send this email in case anyone knows
>> something about this.
>>
>> I have installed the NCL in a server using the file:
>>
>> ncl_ncarg-6.4.0-RHEL6.4_64bit_gnu447.tar.gz
>>
>> The system is (according to uname -or):
>>
>> 2.6.32-642.11.1.el6.x86_64 GNU/Linux
>>
>> and "gcc -v" gives me:
>>
>> Using built-in specs.
>> Target: x86_64-redhat-linux
>> Configured with: ../configure --prefix=/usr --mandir=/usr/share/man
>> --infodir=/usr/share/info
>> --with-bugurl=http://bugzilla.redhat.com/bugzilla [4] [2]
>> --enable-bootstrap --enable-shared --enable-threads=posix
>> --enable-checking=release --with-system-zlib --enable-__cxa_atexit
>> --disable-libunwind-exceptions --enable-gnu-unique-object
>> --enable-languages=c,c++,objc,obj-c++,java,fortran,ada
>> --enable-java-awt=gtk --disable-dssi
>> --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre
>> --enable-libgcj-multifile --enable-java-maintainer-mode
>> --with-ecj-jar=/usr/share/java/eclipse-ecj.jar
>> --disable-libjava-multilib --with-ppl --with-cloog
>> --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
>> Thread model: posix
>> gcc version 4.4.7 20120313 (Red Hat 4.4.7-17) (GCC)
>>
>> If anyother information is needed, just ask.
>>
>> Best regards
>>
>> --
>> -------------------------------------
>> Felix Carrasco
>>
>> Estudiante Doctorado UBA
>> Centro de investigaciones del mar y la atmosfera
>> Universidad de Buenos Aires
>> Dirección:
>> Intendente Guiraldes 2160 [3] - Ciudad Universitaria
>> Pabellón II - 2do. piso
>> Buenos Aires - Argentina
>> Código Postal: C1428EGA
>> Teléfono: (54)(11) 4787-2693 - (54)(11) 4576-3300/09 Ext. 388
>> FAX: (54)(11) 4788-3572
>> _______________________________________________
>> ncl-talk mailing list
>> ncl-talk at ucar.edu
>> List instructions, subscriber options, unsubscribe:
>> http://mailman.ucar.edu/mailman/listinfo/ncl-talk [5] [4]
>>
>> Links:
>> ------
>> [1] https://www.ncl.ucar.edu/Support/talk_archives/2013/3957.html
>> [3]
>> [2] http://bugzilla.redhat.com/bugzilla [4]
>> [3]
>>
> https://maps.google.com/?q=Intendente+Guiraldes+2160&entry=gmail&source=g
>> [6]
>> [4] http://mailman.ucar.edu/mailman/listinfo/ncl-talk [5]
>
> _______________________________________________
> ncl-talk mailing list
> ncl-talk at ucar.edu
> List instructions, subscriber options, unsubscribe:
> http://mailman.ucar.edu/mailman/listinfo/ncl-talk [5]
>
>
>
> Links:
> ------
> [1] http://felix.ca
> [2]
> https://maps.google.com/?q=Intendente+Guiraldes+2160&entry=gmail&source=g
> [3] https://www.ncl.ucar.edu/Support/talk_archives/2013/3957.html
> [4] http://bugzilla.redhat.com/bugzilla
> [5] http://mailman.ucar.edu/mailman/listinfo/ncl-talk
> [6]
> https://maps.google.com/?q=Intendente+Guiraldes+2160&entry=gmail&source=g
More information about the ncl-talk
mailing list