[ncl-talk] Make White: Isolated the Problem with color bar
Barry Lynn
barry.h.lynn at gmail.com
Mon Oct 2 04:26:07 MDT 2017
Hi:
I have attached a simple code that uses the color bar I wanted to use
before. As I wrote yesterday, I believe that it is the WRF *plotting r*esources
that interfere with the color settings (as expressed, originally, through
gsn_define_colormap(wks,"rainbow")
Note: I combined some examples together to create the code that used my
color bar.
http://www.ncl.ucar.edu/Training/Tutorials/WRF_Users_Workshop/Scripts/wrf_demo_plot_tc_gsn.ncl
http://www.ncl.ucar.edu/Training/Tutorials/WRF_Users_Workshop/Scripts/wrf_demo_plot_tc_gsn_shapefiles_mask_zoom.ncl
Even with the call to some WRF resources (wrf_map_resources(f,res)), I
still was able to use the color bar -- but I used gsm_csm instead of wrf
contour programs to make the map (as in the referenced programs).
To shrink the map (and not only the data), I had to turn off the call to
WRF resources, and add some information about the map I wanted.
I am not sure if the projection is okay or not. I have attached the
original map and my "zoomed" in map.
On Fri, Sep 29, 2017 at 11:45 AM, Barry Lynn <barry.h.lynn at gmail.com> wrote:
> HI:
>
> I think I have isolated the problem.
>
> (And, as I wrote in the previous e-mail -- I am sorry you had to do extra
> work to decipher the code I sent (the last e-mail was part of a chain, and
> I should have repeated pertinent information within).
>
> Anyway, in the program attached, there is a line:
>
> gsn_define_colormap(wks,"rainbow")
>
> when commented out, you get mod_2.pdf (shades of blue). When uncommented,
> you get mod.pdf (a color bar the same as the "incorrect" one we tried to
> figure out yesterday in the original program).
>
> As noted, the mod.pdf has the same color bar as the one I mentioned
> yesterday. It is different than the color bar I get when plotting the
> observations (previous e-mail). However, the program that plots the radar
> observations doesn't have the gfs_define_colormap -- yet it works fine
> whether I use NCV_jet or define the colors explicitly.
>
> So, I think the issue is how to reference the color bar table when using
> this WRF program.
>
> Thank you/Have a nice weekend,
>
> Barry
>
> P.S. I am plotting a random field, although I still read the file I sent
> you yesterday.
>
>
>
>
> On Fri, Sep 29, 2017 at 5:02 AM, Barry Lynn <barry.h.lynn at gmail.com>
> wrote:
>
>> HI Mary, Kevin:
>>
>> Thank you for your help.
>>
>> I am sorry about the file, but the original one was 380 GB. When I ran
>> the program with just the file I uploaded, I just changed the file name,
>> and outputted a single panel. This was enough to see the problem, and I
>> should have made this more clear in the *last *e-mail in the chain.
>>
>> Anyway, more important is that when I run your program on my computer
>> with WPS 6.3, I get a different color bar.
>>
>> I get the same color bar as before: wrong.
>>
>> The strange thing is that if I
>> KOKX_V06_20130209_000138.nc
>> <https://drive.google.com/file/d/0B3E3GjUeKpBdYVEzN3ZxU0V2VHc/view?usp=drive_web>
>> use the same color bar label in the program that plots radar obs (I
>> uploaded this in the first e-mail I sent), I get the correct color bar.
>>
>> I have uploaded one file with observed radar and modified the loop to
>> plot a single panel (the others will be missing) -- if you want to compare
>> programs.
>>
>> I hope this isn't too much of a conundrum!
>>
>> (P.S: I suppose I could try to modify the program that works to plot WRF
>> data, instead.)
>>
>> [wrf at mn03 NAM_02_08_2013]$ which wps
>>
>> /usr/bin/which: no wps in (/usr/local/ncl/6.3.0/bin:/usr
>> /local/ncl/6.2.1/bin:/usr/local/ncarg-4.4.2/bin:/opt/mvapich
>> 2-x/intel/bin:/usr/local/bin:/usr/lib64/qt-3.3/bin:/opt/
>> intel/composer_xe_2013_sp1.2.144/bin/intel64:/bin:/usr/bin:
>> /usr/local/sbin:/usr/sbin:/sbin:/home/haim/bin)
>>
>> On Fri, Sep 29, 2017 at 2:01 AM, Mary Haley <haley at ucar.edu> wrote:
>>
>>> Barry,
>>>
>>> Thanks for providing the extra files. What version of NCL are you using?
>>>
>>> Kevin and I looked at this, but there are a number of problems that
>>> makes this hard to debug.
>>>
>>> - When running the script on the data you provided, the field was
>>> constant. I tried also tried to use QCLOUD, but it was also all 0.0
>>>
>>> - You appear to be using your own modified version of WRFUserARW.ncl, so
>>> we commented this out and used the one that comes with NCL
>>>
>>> - As you pointed out, there's only one time step, so we had to modify
>>> the script so itime = 0. This causes a problem because now there are not 6
>>> plots to panel. We had to modify the code to copy the one plot to an array
>>> of 6 plots.
>>>
>>> - We removed a lot of the commented code just to make it easier to see
>>> what was going on. There was also some code in there that should be there,
>>> like:
>>>
>>> grid at lat2d = xlat2d_m ; this is for plotting
>>>
>>>
>>> grid at lon2d = xlon2d_m ; using gsn_csm routines
>>>
>>> but this didn't hurt anything since you are not using gsn_csm routines.
>>> Still, it's very important to keep an eye on code like this because it
>>> could potentially affect your results.
>>>
>>> Even with these problems, we were able to get six plots, and you can see
>>> the first color in the labelbar is white and the last color is the dark red
>>> you expected.
>>>
>>> Are you sure that the image you included was generated from the script
>>> that you attached in your email? The reason I ask this is because this
>>> line alone:
>>>
>>> cmap(0,:) = 1. ; Make first color white
>>>
>>>
>>>
>>> should have forced the first color in your labelbar to be white no
>>> matter what else happened. Also, the fact that you are using NCV_jet,
>>> which has dark red as the last color, but you are seeing orange instead,
>>> leads me to believe that perhaps a different color map is being used,
>>> and/or the NCV_jet color table was modified, and/or the same script was not
>>> used.
>>>
>>> Please run the attached modified script on the same data set that you
>>> provided us, and let me know if you get the attached image.
>>>
>>> In the future, please try to provide a script that works with the data
>>> that you provide. We had to do a number of modifications to get this code
>>> to work.
>>>
>>> Thanks for your consideration.
>>>
>>> --Mary
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> On Thu, Sep 28, 2017 at 12:32 PM, Barry Lynn <barry.h.lynn at gmail.com>
>>> wrote:
>>>
>>>> Hi:
>>>>
>>>> I downloaded the wrf output file to my computer and just uploaded it to
>>>> your site. The program data, which uses wrf variables to set the map, was
>>>> not easy to create a smaller version of.
>>>>
>>>> Thank you for your patience while I sorted this out.
>>>>
>>>> wrfout_d01_2013-02-08_00:00:00.gz
>>>>
>>>> On Thu, Sep 28, 2017 at 8:30 PM, Barry Lynn <barry.h.lynn at gmail.com>
>>>> wrote:
>>>>
>>>>> Hi:
>>>>>
>>>>> I can excerpt the required variables from the file, and upload them
>>>>> from my computer (where ftp is working).
>>>>>
>>>>> However, I may wait until tomorrow (my time) to do it.
>>>>>
>>>>> So, if you don't have a wrf output handy, I will do this.
>>>>>
>>>>> Thank you for the help!
>>>>>
>>>>> Barry
>>>>>
>>>>> On Thu, Sep 28, 2017 at 8:16 PM, Barry Lynn <barry.h.lynn at gmail.com>
>>>>> wrote:
>>>>>
>>>>>> Just in case, you need this program as well (WRAPIT...)
>>>>>>
>>>>>> On Thu, Sep 28, 2017 at 8:15 PM, Barry Lynn <barry.h.lynn at gmail.com>
>>>>>> wrote:
>>>>>>
>>>>>>> Hi Adam:
>>>>>>>
>>>>>>> Thank you for mentioning this.
>>>>>>>
>>>>>>> I will need to ask my system administrator to add this as an option;
>>>>>>> right now I can't use this command.
>>>>>>>
>>>>>>> However, this won't be until Monday, at the earliest.
>>>>>>>
>>>>>>> If there is a way to sftp that would be possible.
>>>>>>>
>>>>>>> Barry
>>>>>>>
>>>>>>> On Thu, Sep 28, 2017 at 7:46 PM, Adam Phillips <asphilli at ucar.edu>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> Hi Barry,
>>>>>>>> (offline from ncl-talk)
>>>>>>>> I was just able to logon to the ftp site by using ncftp (which
>>>>>>>> automatically logs you on anonymously). I can't try with ftp as my servers
>>>>>>>> (strangely) no longer seem to have ftp. So give ncftp a shot if you can. If
>>>>>>>> you continue to have trouble I can speak with our systems folks. I know
>>>>>>>> they've clamped down protocols a bit as some folks were abusing our ftp
>>>>>>>> server.
>>>>>>>> Adam
>>>>>>>>
>>>>>>>> On Thu, Sep 28, 2017 at 10:31 AM, Barry Lynn <
>>>>>>>> barry.h.lynn at gmail.com> wrote:
>>>>>>>>
>>>>>>>>> Hi:
>>>>>>>>>
>>>>>>>>> Thank you for taking a look.
>>>>>>>>>
>>>>>>>>> It is WPS 6.3.
>>>>>>>>>
>>>>>>>>> I am trying to ftp to the ftp site, but after opening once, it
>>>>>>>>> won't open again (and it didn't accept my password).
>>>>>>>>>
>>>>>>>>> ftp ftp.cgd.ucar.edu (can't enter).
>>>>>>>>>
>>>>>>>>> You can take any wrf output file (the only thing is that you need
>>>>>>>>> to make sure that lats/lons settings are within the domain. The other
>>>>>>>>> thing is to set fft_zh to QCLOUD, for example.
>>>>>>>>>
>>>>>>>>> The plot doesn't matter, just that it should read one time step
>>>>>>>>> and make the color bar incorrectly.
>>>>>>>>>
>>>>>>>>> Barry
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Thu, Sep 28, 2017 at 6:13 PM, Mary Haley <haley at ucar.edu>
>>>>>>>>> wrote:
>>>>>>>>>
>>>>>>>>>> Hi Barry,
>>>>>>>>>>
>>>>>>>>>> I couldn't reproduce your problem using a toy script. What
>>>>>>>>>> version of NCL are you using?
>>>>>>>>>>
>>>>>>>>>> Can you upload the wrf output file so I can try running your
>>>>>>>>>> script?
>>>>>>>>>>
>>>>>>>>>> http://www.ncl.ucar.edu/ftp_files.shtml
>>>>>>>>>>
>>>>>>>>>> Thanks,
>>>>>>>>>>
>>>>>>>>>> --Mary
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> On Thu, Sep 28, 2017 at 8:21 AM, Barry Lynn <
>>>>>>>>>> barry.h.lynn at gmail.com> wrote:
>>>>>>>>>>
>>>>>>>>>>> Hi:
>>>>>>>>>>>
>>>>>>>>>>> I need to follow up.
>>>>>>>>>>>
>>>>>>>>>>> radar_panel.. plots nc data from the Weather Climate and Tool
>>>>>>>>>>> Kit (anyone is welcome to use -- but I am not finished with that part of
>>>>>>>>>>> the program to remove attenuation).
>>>>>>>>>>>
>>>>>>>>>>> The other program plots WRF radar data.
>>>>>>>>>>>
>>>>>>>>>>> I have attached data from the mapping of radar observations
>>>>>>>>>>> (KOKX) and the WRF output.
>>>>>>>>>>>
>>>>>>>>>>> The radar observations have white space around a 150 km radius
>>>>>>>>>>> because the data is undefined.
>>>>>>>>>>>
>>>>>>>>>>> I tried to do the same for the WRF output following Mary's
>>>>>>>>>>> suggestion. However, there are two problems: i) even though I use the same
>>>>>>>>>>> "NCV_jet" and ispan values in each, the color bar in the WRF mapping is not
>>>>>>>>>>> the same (it needs to be redder on the right hand side). ii) I would
>>>>>>>>>>> expect white coloring in the first (leftmost) part of the colorbar, but
>>>>>>>>>>> this doesn't seem to work correctly either. Both problems are probably
>>>>>>>>>>> related.
>>>>>>>>>>>
>>>>>>>>>>> Thank you,
>>>>>>>>>>>
>>>>>>>>>>> Barry
>>>>>>>>>>>
>>>>>>>>>>> On Sun, Aug 6, 2017 at 9:53 AM, Michael Weston <
>>>>>>>>>>> mjweston at masdar.ac.ae> wrote:
>>>>>>>>>>>
>>>>>>>>>>>> Thank you Mary!
>>>>>>>>>>>>
>>>>>>>>>>>> That is a much better approach :)
>>>>>>>>>>>> Regards
>>>>>>>>>>>> Michael
>>>>>>>>>>>>
>>>>>>>>>>>> On 04/08/2017 20:05, Mary Haley wrote:
>>>>>>>>>>>>
>>>>>>>>>>>> Hi Mike (and Barry),
>>>>>>>>>>>>
>>>>>>>>>>>> Just an FYI: I don't think you need to use cnFillColors. You
>>>>>>>>>>>> can simply read the colormap you want, set the first color to white, and
>>>>>>>>>>>> then load this new colormap using cnFillPalette:
>>>>>>>>>>>>
>>>>>>>>>>>> cmap = read_colormap_file("BlueYellowRed")
>>>>>>>>>>>> cmap(0,:) = 1. ; Make first color white
>>>>>>>>>>>>
>>>>>>>>>>>> res at cnLevelSelectionMode = "ExplicitLevels" ; set
>>>>>>>>>>>> explicit contour levels
>>>>>>>>>>>> res at cnLevels = (/0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1/)
>>>>>>>>>>>> ; 10 levels
>>>>>>>>>>>> res at cnFillPalette = cmap
>>>>>>>>>>>>
>>>>>>>>>>>> If you want the first color to be transparent rather than
>>>>>>>>>>>> white, then use:
>>>>>>>>>>>>
>>>>>>>>>>>> cmap(0,3) = 0,0 ; Make first color transparent
>>>>>>>>>>>>
>>>>>>>>>>>> Cheers,
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> --
>>>>>>>>>>>>
>>>>>>>>>>>> *Michael* *Weston*
>>>>>>>>>>>> Research Engineer
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> *A Part of Khalifa University of Science and Technology*
>>>>>>>>>>>>
>>>>>>>>>>>> PO Box 54224, Abu Dhabi,
>>>>>>>>>>>> United Arab Emirates
>>>>>>>>>>>> Office +971 2 810 9510 <+971%202%20810%209510>
>>>>>>>>>>>>
>>>>>>>>>>>> Email mjweston at masdar.ac.ae
>>>>>>>>>>>> http://www.masdar.ac.ae
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> *Please consider the environment before printing this email*
>>>>>>>>>>>>
>>>>>>>>>>>> This transmission is confidential and intended solely for the
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>>>>>>>>>>>> and confidential information. If you are not the intended recipient, you
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>>>>>>>>>>>> have received this transmission in error, please notify us immediately by
>>>>>>>>>>>> e-mail at *info at masdar.ae <info at masdar.ae>**.*
>>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> --
>>>>>>>>>>> Barry H. Lynn, Ph.D
>>>>>>>>>>> Senior Lecturer,
>>>>>>>>>>> The Institute of the Earth Science,
>>>>>>>>>>> The Hebrew University of Jerusalem,
>>>>>>>>>>> Givat Ram, Jerusalem 91904, Israel
>>>>>>>>>>> Tel: 972 547 231 170
>>>>>>>>>>> Fax: (972)-25662581
>>>>>>>>>>>
>>>>>>>>>>> C.E.O, Weather It Is, LTD
>>>>>>>>>>> Weather and Climate Focus
>>>>>>>>>>> http://weather-it-is.com
>>>>>>>>>>> Jerusalem, Israel
>>>>>>>>>>> Local: 02 930 9525
>>>>>>>>>>> Cell: 054 7 231 170
>>>>>>>>>>> Int-IS: x972 2 930 9525
>>>>>>>>>>> US 914 432 3108 <(914)%20432-3108>
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> Barry H. Lynn, Ph.D
>>>>>>>>> Senior Lecturer,
>>>>>>>>> The Institute of the Earth Science,
>>>>>>>>> The Hebrew University of Jerusalem,
>>>>>>>>> Givat Ram, Jerusalem 91904, Israel
>>>>>>>>> Tel: 972 547 231 170
>>>>>>>>> Fax: (972)-25662581
>>>>>>>>>
>>>>>>>>> C.E.O, Weather It Is, LTD
>>>>>>>>> Weather and Climate Focus
>>>>>>>>> http://weather-it-is.com
>>>>>>>>> Jerusalem, Israel
>>>>>>>>> Local: 02 930 9525
>>>>>>>>> Cell: 054 7 231 170
>>>>>>>>> Int-IS: x972 2 930 9525
>>>>>>>>> US 914 432 3108 <(914)%20432-3108>
>>>>>>>>>
>>>>>>>>> _______________________________________________
>>>>>>>>> ncl-talk mailing list
>>>>>>>>> ncl-talk at ucar.edu
>>>>>>>>> List instructions, subscriber options, unsubscribe:
>>>>>>>>> http://mailman.ucar.edu/mailman/listinfo/ncl-talk
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> Adam Phillips
>>>>>>>> Associate Scientist, Climate and Global Dynamics Laboratory, NCAR
>>>>>>>> www.cgd.ucar.edu/staff/asphilli/ 303-497-1726 <(303)%20497-1726>
>>>>>>>>
>>>>>>>> <http://www.cgd.ucar.edu/staff/asphilli>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Barry H. Lynn, Ph.D
>>>>>>> Senior Lecturer,
>>>>>>> The Institute of the Earth Science,
>>>>>>> The Hebrew University of Jerusalem,
>>>>>>> Givat Ram, Jerusalem 91904, Israel
>>>>>>> Tel: 972 547 231 170
>>>>>>> Fax: (972)-25662581
>>>>>>>
>>>>>>> C.E.O, Weather It Is, LTD
>>>>>>> Weather and Climate Focus
>>>>>>> http://weather-it-is.com
>>>>>>> Jerusalem, Israel
>>>>>>> Local: 02 930 9525
>>>>>>> Cell: 054 7 231 170
>>>>>>> Int-IS: x972 2 930 9525
>>>>>>> US 914 432 3108 <(914)%20432-3108>
>>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Barry H. Lynn, Ph.D
>>>>>> Senior Lecturer,
>>>>>> The Institute of the Earth Science,
>>>>>> The Hebrew University of Jerusalem,
>>>>>> Givat Ram, Jerusalem 91904, Israel
>>>>>> Tel: 972 547 231 170
>>>>>> Fax: (972)-25662581
>>>>>>
>>>>>> C.E.O, Weather It Is, LTD
>>>>>> Weather and Climate Focus
>>>>>> http://weather-it-is.com
>>>>>> Jerusalem, Israel
>>>>>> Local: 02 930 9525
>>>>>> Cell: 054 7 231 170
>>>>>> Int-IS: x972 2 930 9525
>>>>>> US 914 432 3108 <(914)%20432-3108>
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Barry H. Lynn, Ph.D
>>>>> Senior Lecturer,
>>>>> The Institute of the Earth Science,
>>>>> The Hebrew University of Jerusalem,
>>>>> Givat Ram, Jerusalem 91904, Israel
>>>>> Tel: 972 547 231 170
>>>>> Fax: (972)-25662581
>>>>>
>>>>> C.E.O, Weather It Is, LTD
>>>>> Weather and Climate Focus
>>>>> http://weather-it-is.com
>>>>> Jerusalem, Israel
>>>>> Local: 02 930 9525
>>>>> Cell: 054 7 231 170
>>>>> Int-IS: x972 2 930 9525
>>>>> US 914 432 3108 <(914)%20432-3108>
>>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> Barry H. Lynn, Ph.D
>>>> Senior Lecturer,
>>>> The Institute of the Earth Science,
>>>> The Hebrew University of Jerusalem,
>>>> Givat Ram, Jerusalem 91904, Israel
>>>> Tel: 972 547 231 170
>>>> Fax: (972)-25662581
>>>>
>>>> C.E.O, Weather It Is, LTD
>>>> Weather and Climate Focus
>>>> http://weather-it-is.com
>>>> Jerusalem, Israel
>>>> Local: 02 930 9525
>>>> Cell: 054 7 231 170
>>>> Int-IS: x972 2 930 9525
>>>> US 914 432 3108 <(914)%20432-3108>
>>>>
>>>
>>>
>>
>>
>> --
>> Barry H. Lynn, Ph.D
>> Senior Lecturer,
>> The Institute of the Earth Science,
>> The Hebrew University of Jerusalem,
>> Givat Ram, Jerusalem 91904, Israel
>> Tel: 972 547 231 170
>> Fax: (972)-25662581
>>
>> C.E.O, Weather It Is, LTD
>> Weather and Climate Focus
>> http://weather-it-is.com
>> Jerusalem, Israel
>> Local: 02 930 9525
>> Cell: 054 7 231 170
>> Int-IS: x972 2 930 9525
>> US 914 432 3108 <(914)%20432-3108>
>>
>
>
>
> --
> Barry H. Lynn, Ph.D
> Senior Lecturer,
> The Institute of the Earth Science,
> The Hebrew University of Jerusalem,
> Givat Ram, Jerusalem 91904, Israel
> Tel: 972 547 231 170
> Fax: (972)-25662581
>
> C.E.O, Weather It Is, LTD
> Weather and Climate Focus
> http://weather-it-is.com
> Jerusalem, Israel
> Local: 02 930 9525
> Cell: 054 7 231 170
> Int-IS: x972 2 930 9525
> US 914 432 3108 <(914)%20432-3108>
>
--
Barry H. Lynn, Ph.D
Senior Lecturer,
The Institute of the Earth Science,
The Hebrew University of Jerusalem,
Givat Ram, Jerusalem 91904, Israel
Tel: 972 547 231 170
Fax: (972)-25662581
C.E.O, Weather It Is, LTD
Weather and Climate Focus
http://weather-it-is.com
Jerusalem, Israel
Local: 02 930 9525
Cell: 054 7 231 170
Int-IS: x972 2 930 9525
US 914 432 3108
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