[ncl-talk] (no subject)

Mon Mar 21 10:36:44 MDT 2016

Lisi,

When I see errors like this, I assume that it could be some "newer" feature
in NetCDF4 that NCL is having trouble with.

Can you provide us with the file, and the code that is causing this error?
You can use our ftp:

http://www.ncl.ucar.edu/report_bug.shtml#HowToFTP

Thank you,

--Mary

On Mon, Mar 21, 2016 at 5:30 AM, Lisi Pei <lisipei at msu.edu> wrote:

> Hi Mary,
>
> I am having the problem when using NCL 6.3.0 to read a CMIP5 nc file. Here
> is the error. I searched online but didn’t see any specific resolution
> except updating the ncl version. Do you have any idea of how I can get this
> fixed?
>
> Thank you very much for any possible help in advance.
>
> Best,
> Lisi
>
>
>
> *** glibc detected *** ncl: double free or corruption (!prev):
> 0x000000000f631650 ***
> ======= Backtrace: =========
> /lib64/libc.so.6[0x3b73c75e66]
> /lib64/libc.so.6[0x3b73c789b3]
> ncl(NclFree+0x12)[0x6b4912]
> ncl[0x661bb2]
> ncl(_NclDestroyObj+0xb3)[0x663903]
> ncl[0x660499]
> ncl(_NclDelParent+0x2f)[0x665d9f]
> ncl[0x7077e2]
> ncl(_NclDestroyObj+0xb3)[0x663903]
> ncl[0x708f5f]
> ncl(_NclDelParent+0x2f)[0x665d9f]
> ncl[0x70779b]
> ncl(_NclDestroyObj+0xb3)[0x663903]
> ncl(CallASSIGN_VAR_OP+0x777)[0x7d9b87]
> ncl(_NclExecute+0x3ab)[0x7cdbab]
> ncl(yyparse+0x45dd)[0x5e849d]
> ncl(NclDriver+0x8dc)[0x5def1c]
> ncl(main+0x49)[0x5d7989]
> /lib64/libc.so.6(__libc_start_main+0xfd)[0x3b73c1ed5d]
> ncl[0x5d7879]
> ======= Memory map: ========
> 003fe000-003ff000 rw-p 00000000 00:1e 64479347
> /glade/u/apps/opt/ncl/6.3.0/intel/12.1.5/bin/ncl
> 003ff000-00400000 rw-p 00001000 00:1e 64479347
> /glade/u/apps/opt/ncl/6.3.0/intel/12.1.5/bin/ncl
> 00400000-02bd3000 r-xp 00002000 00:1e 64479347
> /glade/u/apps/opt/ncl/6.3.0/intel/12.1.5/bin/ncl
> 02dd2000-03065000 rw-p 027d4000 00:1e 64479347
> /glade/u/apps/opt/ncl/6.3.0/intel/12.1.5/bin/ncl
> 03065000-0691c000 rw-p 00000000 00:00 0
> 07767000-0fa6d000 rw-p 00000000 00:00 0
> [heap]
> 3701000000-3701010000 r-xp 00000000 08:06 4194307
> /lib64/libbz2.so.1.0.4
> 3701010000-370120f000 ---p 00010000 08:06 4194307
> /lib64/libbz2.so.1.0.4
> 370120f000-3701211000 rw-p 0000f000 08:06 4194307
> /lib64/libbz2.so.1.0.4
> 3b73800000-3b73820000 r-xp 00000000 08:06 4194310
> /lib64/ld-2.12.so
> 3b73a1f000-3b73a20000 r--p 0001f000 08:06 4194310
> /lib64/ld-2.12.so
> 3b73a20000-3b73a21000 rw-p 00020000 08:06 4194310
> /lib64/ld-2.12.so
> 3b73a21000-3b73a22000 rw-p 00000000 00:00 0
> 3b73c00000-3b73d8a000 r-xp 00000000 08:06 4194324
> /lib64/libc-2.12.so
> 3b73d8a000-3b73f8a000 ---p 0018a000 08:06 4194324
> /lib64/libc-2.12.so
> 3b73f8a000-3b73f8e000 r--p 0018a000 08:06 4194324
> /lib64/libc-2.12.so
> 3b73f8e000-3b73f8f000 rw-p 0018e000 08:06 4194324
> /lib64/libc-2.12.so
> 3b73f8f000-3b73f94000 rw-p 00000000 00:00 0
> 3b74000000-3b74083000 r-xp 00000000 08:06 4194342
> /lib64/libm-2.12.so
> 3b74083000-3b74282000 ---p 00083000 08:06 4194342
> /lib64/libm-2.12.so
> 3b74282000-3b74283000 r--p 00082000 08:06 4194342
> /lib64/libm-2.12.so
> 3b74283000-3b74284000 rw-p 00083000 08:06 4194342
> /lib64/libm-2.12.so
> 3b74400000-3b74402000 r-xp 00000000 08:06 4194331
> /lib64/libdl-2.12.so
> 3b74402000-3b74602000 ---p 00002000 08:06 4194331
> /lib64/libdl-2.12.so
> 3b74602000-3b74603000 r--p 00002000 08:06 4194331
> /lib64/libdl-2.12.so
> 3b74603000-3b74604000 rw-p 00003000 08:06 4194331
> /lib64/libdl-2.12.so
> 3b74800000-3b74817000 r-xp 00000000 08:06 4194456
> /lib64/libpthread-2.12.so
> 3b74817000-3b74a17000 ---p 00017000 08:06 4194456
> /lib64/libpthread-2.12.so
> 3b74a17000-3b74a18000 r--p 00017000 08:06 4194456
> /lib64/libpthread-2.12.so
> 3b74a18000-3b74a19000 rw-p 00018000 08:06 4194456
> /lib64/libpthread-2.12.so
> 3b74a19000-3b74a1d000 rw-p 00000000 00:00 0
> 3b75000000-3b75007000 r-xp 00000000 08:06 4194482
> /lib64/librt-2.12.so
> 3b75007000-3b75206000 ---p 00007000 08:06 4194482
> /lib64/librt-2.12.so
> 3b75206000-3b75207000 r--p 00006000 08:06 4194482
> /lib64/librt-2.12.so
> 3b75207000-3b75208000 rw-p 00007000 08:06 4194482
> /lib64/librt-2.12.so
> 3b75c00000-3b75c16000 r-xp 00000000 08:06 4194423
> /lib64/libresolv-2.12.so
> 3b75c16000-3b75e16000 ---p 00016000 08:06 4194423
> /lib64/libresolv-2.12.so
> 3b75e16000-3b75e17000 r--p 00016000 08:06 4194423
> /lib64/libresolv-2.12.so
> 3b75e17000-3b75e18000 rw-p 00017000 08:06 4194423
> /lib64/libresolv-2.12.so
> 3b75e18000-3b75e1a000 rw-p 00000000 00:00 0
> 3b76800000-3b76802000 r-xp 00000000 08:06 6031897
> /usr/lib64/libXau.so.6.0.0
> 3b76802000-3b76a02000 ---p 00002000 08:06 6031897
> /usr/lib64/libXau.so.6.0.0
> 3b76a02000-3b76a03000 rw-p 00002000 08:06 6031897
> /usr/lib64/libXau.so.6.0.0
> 3b77000000-3b77026000 r-xp 00000000 08:06 4194333
> /lib64/libexpat.so.1.5.2
> 3b77026000-3b77225000 ---p 00026000 08:06 4194333
> /lib64/libexpat.so.1.5.2
> 3b77225000-3b77228000 rw-p 00025000 08:06 4194333
> /lib64/libexpat.so.1.5.2
> 3b77400000-3b7741d000 r-xp 00000000 08:06 6031984
> /usr/lib64/libxcb.so.1.1.0
> 3b7741d000-3b7761d000 ---p 0001d000 08:06 6031984
> /usr/lib64/libxcb.so.1.1.0
> 3b7761d000-3b7761e000 rw-p 0001d000 08:06 6031984
> /usr/lib64/libxcb.so.1.1.0
> 3b77800000-3b77937000 r-xp 00000000 08:06 6033645
> /usr/lib64/libX11.so.6.3.0
> 3b77937000-3b77b37000 ---p 00137000 08:06 6033645
> /usr/lib64/libX11.so.6.3.0
> 3b77b37000-3b77b3d000 rw-p 00137000 08:06 6033645
> /usr/lib64/libX11.so.6.3.0
> 3b77c00000-3b77c98000 r-xp 00000000 08:06 6043761
> /usr/lib64/libfreetype.so.6.3.22
> 3b77c98000-3b77e97000 ---p 00098000 08:06 6043761
> /usr/lib64/libfreetype.so.6.3.22
> 3b77e97000-3b77e9d000 rw-p 00097000 08:06 6043761
> /usr/lib64/libfreetype.so.6.3.22
> 3b78000000-3b78034000 r-xp 00000000 08:06 6043762
> /usr/lib64/libfontconfig.so.1.4.4
> 3b78034000-3b78234000 ---p 00034000 08:06 6043762
> /usr/lib64/libfontconfig.so.1.4.4
> 3b78234000-3b78236000 rw-p 00034000 08:06 6043762
> /usr/lib64/libfontconfig.so.1.4.4
> 3b78800000-3b78812000 r-xp 00000000 08:06 6043775
> /usr/lib64/libXext.so.6.4.0
> 3b78812000-3b78a12000 ---p 00012000 08:06 6043775
> /usr/lib64/libXext.so.6.4.0
> 3b78a12000-3b78a13000 rw-p 00012000 08:06 6043775
> /usr/lib64/libXext.so.6.4.0
> 3b79000000-3b79009000 r-xp 00000000 08:06 6043763
> /usr/lib64/libXrender.so.1.3.0
> 3b79009000-3b79209000 ---p 00009000 08:06 6043763
> /usr/lib64/libXrender.so.1.3.0
> 3b79209000-3b7920a000 rw-p 00009000 08:06 6043763
> /usr/lib64/libXrender.so.1.3.0Aborted (core dumped)
>
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