[ncl-talk] unexpected white contours in color filled plot

[Mary Haley]

Hi Mark,

That is a little odd. You did good work debugging the problem, so missing
values and nans are ruled out.

To further debug this, can you try plotting a very basic contour plot,
without the pressure /height axes, and without any coordinate information
and send the image:

 plot = gsn_contour (wks,uwind,res)

The gsn_contour script ignores any coordinate arrays, which I want to make
sure are not the source of the problem.

Thanks,

--Mary



On Fri, Aug 19, 2016 at 10:07 AM, Mark Branson <mark at atmos.colostate.edu>
wrote:

> Hello.
>
> I'm running ncl v6.2.1 and here is what I'm doing in the attached script:
>
> 1) read in a long time series of zonal wind and surface pressure data from
> CAM output.
> 2) interpolate them to constant pressure levels using vinth2p.
> 3) compute long-term monthly means with clmMonTLLL.
> 4) compute the annual mean of the monthly means.
> 5) subtract off the annual mean from the monthly means.
> 6) select one latitude (the equator), and then take the mean of all
> longitudes.
> 6) make a color-filled height versus time cross section plot.
>
> I get the plot (see attached), but some of the contours near the top are
> white.  I thought maybe it was because there were some missing or bogus
> values, so I inserted a check for those with the ismissing and isnan_ieee
> functions and it seems the data is fine.
>
> Any ideas?
>
> Thanks,
> Mark Branson
>
>
> begin
>  a = addfile("/pool/mark/spcam_nlev51/spcam_nlev51.cam.h0.0003-01.nc","r")
>  hyam = a->hyam
>  hybm = a->hybm
>
>  b = addfile("/pool/mark/spcam_nlev51/uandps.nc","r")
>  u = b->U         ;u = [time | 338] x [lev | 53] x [lat | 96] x [lon | 144]
>  ps = b->PS       ;ps = [time | 338] x [lat | 96] x [lon | 144]
>  u at _FillValue = default_fillvalue("float")
>
>  if (any(ismissing(u))) then
>    print("### original u array contains some missing data ###")
>  end if
>
> ; interpolation variables
>  plvlM = (/ 30.,50.,70.,100.,150.,200.,250.,300.,350.,400.,450.,500.,550.,
> \
>            600.,650.,700.,750.,800.,850./)
>  plvlM at units = "mb"
>  nplvlM = dimsizes(plvlM)
>
>  p0     = 1000.     ; mb required by vinth2p
>  interp = 2         ; log interpolation
>  extrap = False     ; no extrapolation past psfc.
>
>  tmp = vinth2p(u,hyam,hybm,plvlM,ps,interp,p0,1,extrap)
>  if (typeof(tmp).eq."double") then
>    uwind1 = dble2flt(tmp)
>  else
>    uwind1 = tmp
>  end if
>
> ; compute long-term monthly means
>  uclm = clmMonTLLL(uwind1)       ;uclm = [month | 12] x [lev_p | 33] x
> [lat | 96] x [lon | 144]
>
> ; annual mean of monthly means
>  uann = dim_avg_n_Wrap(uclm,0)   ;uann = [lev_p | 33] x [lat | 96] x [lon
> | 144]
>
> ; subtract off annual mean from monthly means
>  do i = 0,11
>    uclm(i,:,:,:) = (/ uclm(i,:,:,:) - uann(:,:,:) /)
>  end do
>
>  uwind2 = uclm(:,:,47,:)              ; select the equator for the latitude
>  uwind3 = dim_avg_Wrap(uwind2)        ; mean of all longitudes
>  uwind = uwind3(lev_p|:,month|:)      ; swap the array dimensions:
>  month,level --> level,month
>
>  printMinMax(uwind,False)
>
>  if (any(ismissing(uwind))) then
>    print("### uwind array contains some missing data ###")
>  end if
>  if (any(isnan_ieee(uwind))) then
>    print("### uwind array contains some NaNs ###")
>  end if
>
>  uwind at long_name = "SP-CAM, 51 levels, Monthly Means"
>
>  wks   = gsn_open_wks ("eps", "test1")           ; send graphics to EPS
> file
>  gsn_define_colormap(wks,"BlRe")
>
>  res                      = True
>  res at cnFillOn             = True
>  res at cnLinesOn            = True
>  res at lbLabelBarOn         = True
>  res at cnInfoLabelOn        = False
>
> ; change labels for monthly mean plot
>  res at tmXBMode = "Explicit"
>  res at tmXBLabelFontHeightF = 0.015
>  res at tmXBLabels=(/"Jan","Feb","Mar","Apr","May","Jun","Jul","Aug","Sep", \
>                   "Oct","Nov","Dec","Jan"/)
>  res at tmXBValues = ispan(0,12,1)
>
>  plot = gsn_csm_pres_hgt (wks,uwind,res)
> end
>
> ** OUTPUT FROM THE SCRIPT **
>
> /Users/mark/mmf/SPCAM5/stratosphere_gwdrag/spcam_nlev51> ncl hvstime.ncl
> Copyright (C) 1995-2014 - All Rights Reserved
> University Corporation for Atmospheric Research
> NCAR Command Language Version 6.2.1
> The use of this software is governed by a License Agreement.
> See http://www.ncl.ucar.edu/ for more details.
> (0) min=-9.835   max=6.77056
>
>
>
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