<div dir="ltr"><div class="gmail_default" style="font-size:small">Hi Mark,</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">That is a little odd. You did good work debugging the problem, so missing values and nans are ruled out.</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">To further debug this, can you try plotting a very basic contour plot, without the pressure /height axes, and without any coordinate information and send the image:</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small"><span style="font-size:12.8px"> plot = gsn_contour (wks,uwind,res) </span><br style="font-size:12.8px"></div><div class="gmail_default" style="font-size:small"><span style="font-size:12.8px"><br></span></div><div class="gmail_default" style="font-size:small"><span style="font-size:12.8px">The gsn_contour script ignores any coordinate arrays, which I want to make sure are not the source of the problem.</span></div><div class="gmail_default" style="font-size:small"><span style="font-size:12.8px"><br></span></div><div class="gmail_default" style="font-size:small">Thanks,</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">--Mary</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small"><br></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Aug 19, 2016 at 10:07 AM, Mark Branson <span dir="ltr"><<a href="mailto:mark@atmos.colostate.edu" target="_blank">mark@atmos.colostate.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">Hello.<br><br>I'm running ncl v6.2.1 and here is what I'm doing in the attached script:<br><br>1) read in a long time series of zonal wind and surface pressure data from CAM output.<br>2) interpolate them to constant pressure levels using vinth2p.<br>3) compute long-term monthly means with clmMonTLLL.<br>4) compute the annual mean of the monthly means.<br>5) subtract off the annual mean from the monthly means.<br>6) select one latitude (the equator), and then take the mean of all longitudes.<br>6) make a color-filled height versus time cross section plot.<br><br>I get the plot (see attached), but some of the contours near the top are white. I thought maybe it was because there were some missing or bogus values, so I inserted a check for those with the ismissing and isnan_ieee functions and it seems the data is fine.<br><br>Any ideas?<br><br>Thanks,<br>Mark Branson<br><br><br>begin<br> a = addfile("/pool/mark/spcam_<wbr>nlev51/<a href="http://spcam_nlev51.cam.h0.0003-01.nc" target="_blank">spcam_nlev51.cam.h0.<wbr>0003-01.nc</a>","r")<br> hyam = a->hyam<br> hybm = a->hybm<br><br> b = addfile("/pool/mark/spcam_<wbr>nlev51/<a href="http://uandps.nc" target="_blank">uandps.nc</a>","r")<br> u = b->U ;u = [time | 338] x [lev | 53] x [lat | 96] x [lon | 144]<br> ps = b->PS ;ps = [time | 338] x [lat | 96] x [lon | 144]<br> u@_FillValue = default_fillvalue("float")<br><br> if (any(ismissing(u))) then<br> print("### original u array contains some missing data ###")<br> end if<br><br>; interpolation variables<br> plvlM = (/ 30.,50.,70.,100.,150.,200.,<wbr>250.,300.,350.,400.,450.,500.,<wbr>550., \<br> 600.,650.,700.,750.<wbr>,800.,850./)<br> plvlM@units = "mb"<br> nplvlM = dimsizes(plvlM)<br><br> p0 = 1000. ; mb required by vinth2p<br> interp = 2 ; log interpolation<br> extrap = False ; no extrapolation past psfc.<br><br> tmp = vinth2p(u,hyam,hybm,plvlM,ps,<wbr>interp,p0,1,extrap)<br> if (typeof(tmp).eq."double") then<br> uwind1 = dble2flt(tmp)<br> else<br> uwind1 = tmp<br> end if<br><br>; compute long-term monthly means<br> uclm = clmMonTLLL(uwind1) ;uclm = [month | 12] x [lev_p | 33] x [lat | 96] x [lon | 144]<br><br>; annual mean of monthly means<br> uann = dim_avg_n_Wrap(uclm,0) ;uann = [lev_p | 33] x [lat | 96] x [lon | 144]<br><br>; subtract off annual mean from monthly means<br> do i = 0,11<br> uclm(i,:,:,:) = (/ uclm(i,:,:,:) - uann(:,:,:) /)<br> end do<br><br> uwind2 = uclm(:,:,47,:) ; select the equator for the latitude<br> uwind3 = dim_avg_Wrap(uwind2) ; mean of all longitudes<br> uwind = uwind3(lev_p|:,month|:) ; swap the array dimensions: month,level --> level,month<br><br> printMinMax(uwind,False)<br><br> if (any(ismissing(uwind))) then<br> print("### uwind array contains some missing data ###")<br> end if<br> if (any(isnan_ieee(uwind))) then<br> print("### uwind array contains some NaNs ###")<br> end if<br><br> uwind@long_name = "SP-CAM, 51 levels, Monthly Means"<br><br> wks = gsn_open_wks ("eps", "test1") ; send graphics to EPS file<br> gsn_define_colormap(wks,"<wbr>BlRe")<br><br> res = True <br> res@cnFillOn = True <br> res@cnLinesOn = True <br> res@lbLabelBarOn = True <br> res@cnInfoLabelOn = False<br><br>; change labels for monthly mean plot<br> res@tmXBMode = "Explicit"<br> res@tmXBLabelFontHeightF = 0.015<br> res@tmXBLabels=(/"Jan","Feb",<wbr>"Mar","Apr","May","Jun","Jul",<wbr>"Aug","Sep", \<br> "Oct","Nov",<wbr>"Dec","Jan"/)<br> res@tmXBValues = ispan(0,12,1)<br><br> plot = gsn_csm_pres_hgt (wks,uwind,res) <br>end<br><br>** OUTPUT FROM THE SCRIPT **<br><br>/Users/mark/mmf/SPCAM5/<wbr>stratosphere_gwdrag/spcam_<wbr>nlev51> ncl hvstime.ncl<br>Copyright (C) 1995-2014 - All Rights Reserved<br>University Corporation for Atmospheric Research<br>NCAR Command Language Version 6.2.1<br>The use of this software is governed by a License Agreement.<br>See <a href="http://www.ncl.ucar.edu/" target="_blank">http://www.ncl.ucar.edu/</a> <wbr>for more details.<br>(0)<span style="white-space:pre-wrap"> </span>min=-9.835 max=6.77056<br><br></div><br><div style="word-wrap:break-word"></div><br>______________________________<wbr>_________________<br>
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