[ncl-install] NCARG Issue with ncargf77
OMAR SANCHEZ CAMACHO
cmomar_alf at comunidad.unam.mx
Wed Jul 28 12:13:52 MDT 2021
Hello Orhan,
Of course, if I find some solution I will tell you.
We keep in touch.
Omar Sánchez Camacho.
________________________________
From: Orhan Eroglu <oero at ucar.edu>
Sent: Wednesday, July 28, 2021 10:50:53 AM
To: OMAR SANCHEZ CAMACHO <cmomar_alf at comunidad.unam.mx>
Cc: ncl-install at mailman.ucar.edu <ncl-install at mailman.ucar.edu>
Subject: Re: [ncl-install] NCARG Issue with ncargf77
Hi Omar,
Thanks a lot for the details; they are helpful!
FYI: I have a conda-installed NCL environment in my Darwin (MacOS) platform, and I am having the same issue with ncargex as you have. I will keep looking into this as you said your other computers with conda-installed NCL environment are able to run ncargex.
Other ncl-install members:
Please feel free to step in if you any ideas on this issue.
Best,
On Wed, Jul 28, 2021 at 9:23 AM OMAR SANCHEZ CAMACHO <cmomar_alf at comunidad.unam.mx<mailto:cmomar_alf at comunidad.unam.mx>> wrote:
Hello Orhan,
In the other computer where I be able to run `ncargex` and `ncargf77` I have the NCL environment CONDA (Anaconda).
Currently I work with Linux (Debian 10) and here is where I had the problems previously said, but before I used to work with Ubuntu distribution, on this computer I could compile `ncargf77` but some days ago this computer crashed, that's the reason for I change of computer. In both computers I work with CONDA (Anaconda).
I would like to solve this problem because I need to compile NCARG Graphics Fortran programs, I work in CDF and I use NCARG Fortran programs to visualize my results.
Hope this information will be useful.
Best wishes.
Omar Sánchez C.
________________________________
From: Orhan Eroglu <oero at ucar.edu<mailto:oero at ucar.edu>>
Sent: Wednesday, July 28, 2021 9:48:35 AM
To: OMAR SANCHEZ CAMACHO <cmomar_alf at comunidad.unam.mx<mailto:cmomar_alf at comunidad.unam.mx>>
Cc: ncl-install at mailman.ucar.edu<mailto:ncl-install at mailman.ucar.edu> <ncl-install at mailman.ucar.edu<mailto:ncl-install at mailman.ucar.edu>>
Subject: Re: [ncl-install] NCARG Issue with ncargf77
Hi Omar,
I continued working on it but couldn't get it to work. I believe that compiling/linking NCAR Graphics C or Fortran programs (i.e. ncargex) probably needs a NCL environment that is built from source instead of installed via conda, which is unfortunately beyond my expertise. Could you clarify what NCL environments (i.e. conda or built from source) the other computers have, in which you are able to run `ncargex` commands.
My personal view is that running `ncargex` is for users who need to compile NCAR Graphics C or Fortran programs. SO, if you don't have particular reason to compile NCAR Graphics C or Fortran programs, you might be fine just running NCL.
Regards,
On Thu, Jul 22, 2021 at 2:08 PM OMAR SANCHEZ CAMACHO <cmomar_alf at comunidad.unam.mx<mailto:cmomar_alf at comunidad.unam.mx>> wrote:
Thanks a lot for your response.
I still need help because I don't run *.f programs with NCARG, when I type the command:
$ ncargf77 drag_vs_step.f
Output is:
"/home/conda/feedstock_root/build_artifacts/ncl_1602173391809/_build_env/bin/x86_64-conda-linux-gnu-gfortran -fPIC -fno-second-underscore -fno-range-check -fopenmp -O -L/home/omar13/anaconda3/envs/ncl_stable/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/omar13/anaconda3/envs/ncl_stable/lib -Wl,-rpath-link,/home/omar13/anaconda3/envs/ncl_stable/lib -L/home/omar13/anaconda3/envs/ncl_stable/lib drag_vs_step.f -L/home/omar13/anaconda3/envs/ncl_stable/lib -L/usr/X11R6/lib64 -lncarg -lncarg_gks -lncarg_c -lX11 -lXext -lcairo -lXrender -lfontconfig -lpixman-1 -lfreetype -lexpat -lpng -lz -lbz2
/home/conda/feedstock_root/build_artifacts/ncl_1602173391809/_build_env/bin/x86_64-conda-linux-gnu-gfortran: Command not found."
And when I try to run an example of NCARG:
$ ncargex fcover
Output is:
"NCAR Graphics Fortran Fundamentals Example <fcover>
Copying fcover.f
Copying fcover.dat
Compiling and linking...
/home/conda/feedstock_root/build_artifacts/ncl_1602173391809/_build_env/bin/x86_64-conda-linux-gnu-gfortran -fPIC -fno-second-underscore -fno-range-check -fopenmp -O -L/home/omar13/anaconda3/envs/ncl_stable/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/omar13/anaconda3/envs/ncl_stable/lib -Wl,-rpath-link,/home/omar13/anaconda3/envs/ncl_stable/lib -L/home/omar13/anaconda3/envs/ncl_stable/lib -o fcover fcover.f -L/home/omar13/anaconda3/envs/ncl_stable/lib -L/usr/X11R6/lib64 -lncarg -lncarg_gks -lncarg_c -lX11 -lXext -lcairo -lXrender -lfontconfig -lpixman-1 -lfreetype -lexpat -lpng -lz -lbz2
/home/conda/feedstock_root/build_artifacts/ncl_1602173391809/_build_env/bin/x86_64-conda-linux-gnu-gfortran: Command not found.
The compile and link failed."
I sure that the example fcover and the program
drag_vs_step.f are right
I am sure that my program (drag_vs_step.f) and the example (fcover) are fine because I can compile them without any problem on another computer with NCARG. So I don't know what is the problem here.
Kind regards.
Omar Sánchez C.
________________________________
De: Orhan Eroglu <oero at ucar.edu<mailto:oero at ucar.edu>>
Enviado: jueves, 22 de julio de 2021 8:41 a. m.
Para: OMAR SANCHEZ CAMACHO
Cc: ncl-install at mailman.ucar.edu<mailto:ncl-install at mailman.ucar.edu>
Asunto: Re: [ncl-install] NCARG Issue with ncargf77
Hi Omar,
I am sorry to hear inconvenience you had!
Before moving forward, I'd like to clarify some thing about your environment variables first. Even though you say that "I don't have either NCARG_ROOT, or NCARG_BIN, NCARG_LIB, and NCARG_INCLUDE set", you seem to have NCARG_ROOT variable set properly as we can see from
Output:
NCARG_ROOT=/home/omar13/anaconda3/envs/ncl_stable
as well as you were able to run successfully
$ ncl $NCARG_ROOT/lib/ncarg/nclex/gsun/gsun02n.ncl
$ ncl $NCARG_ROOT/lib/ncarg/nclex/nug/NUG_multi_timeseries.ncl
If we agree on this and you still have your issues running ncargex, I am happy to further help.
Best,
On Tue, Jun 22, 2021 at 10:15 AM OMAR SANCHEZ CAMACHO via ncl-install <ncl-install at mailman.ucar.edu<mailto:ncl-install at mailman.ucar.edu>> wrote:
Hello,
I am trying to compile and execute and example with NCARG following the instructions on "Chapter 2: Five quick steps for creating and viewing your plot", but I have a problem when I execute:
$ env
I don't have either NCARG_ROOT, or NCARG_BIN, NCARG_LIB, and NCARG_INCLUDE set, I don't know why, because I followed the installation instructions (I've installed with Conda), even I tested NCL with:
$ ncl -V
$ ncl $NCARG_ROOT/lib/ncarg/nclex/gsun/gsun02n.ncl
$ ncl $NCARG_ROOT/lib/ncarg/nclex/nug/NUG_multi_timeseries.ncl
and all of them works, but when I execute:
$ ncargex fcover
Output is:
"NCAR Graphics Fortran Fundamentals Example <fcover>
Copying fcover.f
Copying fcover.dat
Compiling and linking...
/home/conda/feedstock_root/build_artifacts/ncl_1602173391809/_build_env/bin/x86_64-conda-linux-gnu-gfortran -fPIC -fno-second-underscore -fno-range-check -fopenmp -O -L/home/omar13/anaconda3/envs/ncl_stable/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/omar13/anaconda3/envs/ncl_stable/lib -Wl,-rpath-link,/home/omar13/anaconda3/envs/ncl_stable/lib -L/home/omar13/anaconda3/envs/ncl_stable/lib -o fcover fcover.f -L/home/omar13/anaconda3/envs/ncl_stable/lib -L/usr/X11R6/lib64 -lncarg -lncarg_gks -lncarg_c -lX11 -lXext -lcairo -lXrender -lfontconfig -lpixman-1 -lfreetype -lexpat -lpng -lz -lbz2
/home/conda/feedstock_root/build_artifacts/ncl_1602173391809/_build_env/bin/x86_64-conda-linux-gnu-gfortran: Command not found.
The compile and link failed."
The same issue is also present when I compile my own *.f program (I am sure it is okay, because I can run it with other computer with NCL):
$ ncargf77 drag_vs_step.f
Output is:
"/home/conda/feedstock_root/build_artifacts/ncl_1602173391809/_build_env/bin/x86_64-conda-linux-gnu-gfortran -fPIC -fno-second-underscore -fno-range-check -fopenmp -O -L/home/omar13/anaconda3/envs/ncl_stable/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/omar13/anaconda3/envs/ncl_stable/lib -Wl,-rpath-link,/home/omar13/anaconda3/envs/ncl_stable/lib -L/home/omar13/anaconda3/envs/ncl_stable/lib drag_vs_step.f -L/home/omar13/anaconda3/envs/ncl_stable/lib -L/usr/X11R6/lib64 -lncarg -lncarg_gks -lncarg_c -lX11 -lXext -lcairo -lXrender -lfontconfig -lpixman-1 -lfreetype -lexpat -lpng -lz -lbz2
/home/conda/feedstock_root/build_artifacts/ncl_1602173391809/_build_env/bin/x86_64-conda-linux-gnu-gfortran: Command not found."
________________________________________________________
Outputs from typing the following commands from a UNIX terminal window:
$ conda list -n ncl_stable
Output:
# packages in environment at /home/omar13/anaconda3/envs/ncl_stable:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 1_gnu conda-forge
boost-cpp 1.74.0 h9359b55_0 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.17.1 h7f98852_1 conda-forge
ca-certificates 2021.5.30 ha878542_0 conda-forge
cairo 1.16.0 h488836b_1006 conda-forge
cfitsio 3.470 h2e3daa1_7 conda-forge
curl 7.76.1 h979ede3_1 conda-forge
esmf 8.0.1 nompi_hcaa3220_2 conda-forge
expat 2.4.1 h9c3ff4c_0 conda-forge
fontconfig 2.13.1 hba837de_1005 conda-forge
freetype 2.10.4 h0708190_1 conda-forge
freexl 1.0.6 h7f98852_0 conda-forge
geos 3.8.1 he1b5a44_0 conda-forge
geotiff 1.6.0 h5d11630_3 conda-forge
gettext 0.19.8.1 h0b5b191_1005 conda-forge
giflib 5.2.1 h36c2ea0_2 conda-forge
gsl 2.6 he838d99_2 conda-forge
hdf4 4.2.15 h10796ff_3 conda-forge
hdf5 1.10.6 nompi_h7c3c948_1111 conda-forge
hdfeos2 2.20 h64bfcee_1000 conda-forge
hdfeos5 5.1.16 hb4ce793_7 conda-forge
icu 67.1 he1b5a44_0 conda-forge
jasper 1.900.1 h07fcdf6_1006 conda-forge
jpeg 9d h36c2ea0_0 conda-forge
json-c 0.13.1 hbfbb72e_1002 conda-forge
kealib 1.4.14 hcc255d8_2 conda-forge
krb5 1.17.2 h926e7f8_0 conda-forge
libblas 3.9.0 8_openblas conda-forge
libcblas 3.9.0 8_openblas conda-forge
libcurl 7.76.1 hc4aaa36_1 conda-forge
libdap4 3.20.6 hd7c4107_2 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libffi 3.3 h58526e2_2 conda-forge
libgcc-ng 9.3.0 h2828fa1_19 conda-forge
libgdal 3.1.4 h50e41a3_1 conda-forge
libgfortran-ng 7.5.0 h14aa051_19 conda-forge
libgfortran4 7.5.0 h14aa051_19 conda-forge
libglib 2.68.3 h3e27bee_0 conda-forge
libgomp 9.3.0 h2828fa1_19 conda-forge
libiconv 1.16 h516909a_0 conda-forge
libkml 1.3.0 h238a007_1013 conda-forge
libnetcdf 4.7.4 nompi_h56d31a8_107 conda-forge
libnghttp2 1.43.0 h812cca2_0 conda-forge
libopenblas 0.3.12 pthreads_hb3c22a3_1 conda-forge
libpng 1.6.37 h21135ba_2 conda-forge
libpq 12.3 h255efa7_3 conda-forge
librttopo 1.1.0 hb271727_4 conda-forge
libspatialite 5.0.1 h6ec7341_0 conda-forge
libssh2 1.9.0 ha56f1ee_6 conda-forge
libstdcxx-ng 9.3.0 h6de172a_19 conda-forge
libtiff 4.2.0 hbd63e13_2 conda-forge
libuuid 2.32.1 h7f98852_1000 conda-forge
libwebp-base 1.2.0 h7f98852_2 conda-forge
libxcb 1.13 h7f98852_1003 conda-forge
libxml2 2.9.10 h68273f3_2 conda-forge
lz4-c 1.9.3 h9c3ff4c_0 conda-forge
ncl 6.6.2 h087f628_23 conda-forge
ncurses 6.2 h58526e2_4 conda-forge
netcdf-fortran 4.5.3 nompi_hfef6a68_101 conda-forge
openjpeg 2.4.0 hb52868f_1 conda-forge
openssl 1.1.1k h7f98852_0 conda-forge
pcre 8.45 h9c3ff4c_0 conda-forge
pixman 0.38.0 h516909a_1003 conda-forge
poppler 0.89.0 h2de54a5_5 conda-forge
poppler-data 0.4.10 0 conda-forge
postgresql 12.3 hc2f5b80_3 conda-forge
proj 7.1.1 h966b41f_3 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
readline 8.1 h46c0cb4_0 conda-forge
sqlite 3.36.0 h9cd32fc_0 conda-forge
tiledb 2.1.6 h91fcb0e_1 conda-forge
tk 8.6.10 h21135ba_1 conda-forge
tzcode 2021a h7f98852_1 conda-forge
udunits2 2.2.27.27 h975c496_1 conda-forge
xerces-c 3.2.3 hfe33f54_1 conda-forge
xorg-imake 1.0.7 0 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.0.10 h7f98852_0 conda-forge
xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
xorg-libx11 1.6.12 h36c2ea0_0 conda-forge
xorg-libxau 1.0.9 h7f98852_0 conda-forge
xorg-libxaw 1.0.14 h7f98852_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h516909a_0 conda-forge
xorg-libxmu 1.1.3 h516909a_0 conda-forge
xorg-libxpm 3.5.13 h516909a_0 conda-forge
xorg-libxrender 0.9.10 h516909a_1002 conda-forge
xorg-libxt 1.1.5 h516909a_1003 conda-forge
xorg-makedepend 1.0.6 he1b5a44_1 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.5 h516909a_1 conda-forge
zlib 1.2.11 h516909a_1010 conda-forge
zstd 1.4.9 ha95c52a_0 conda-forge
$ conda --version
Output:
conda 4.10.1
$ which ncl
Output:
/home/omar13/anaconda3/envs/ncl_stable/bin/ncl
$ ncl -V
Output:
6.6.2
$ env | grep NCARG
Output:
NCARG_ROOT=/home/omar13/anaconda3/envs/ncl_stable
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