[ncl-install] Help!
Kevin Hallock
hallock at ucar.edu
Fri Mar 27 11:09:37 MDT 2020
Hi Octavio,
I’m sorry to hear you’ve having trouble getting NCL and NCAR Graphics to work.
Are you specifically trying to use NCAR Graphics, or do you just need NCL? From the terminal output you pasted below, it looks like NCL is already working; however, getting NCAR Graphics to work properly with a conda-provided Fortran compiler might require a bit more work.
Thanks,
Kevin
> On Mar 26, 2020, at 9:28 PM, Octavio Morales via ncl-install <ncl-install at ucar.edu> wrote:
>
> Hi,I have downloaded an installed NCL-NCAR using miniconda, but when I try to compile this message appears:
>
> (ncl_stable) augustico at octavioamg-gl552jx:~$ ncargex arex02
>
> NCAR Graphics Fortran Example <arex02>
>
> Copying arex02.f
>
> Compiling and linking...
> /home/conda/feedstock_root/build_artifacts/ncl_1585160596974/_build_env/bin/x86_64-conda_cos6-linux-gnu-gfortran -fPIC -fno-second-underscore -fno-range-check -fopenmp -O -L/home/augustico/miniconda3/envs/ncl_stable/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/augustico/miniconda3/envs/ncl_stable/lib -Wl,-rpath-link,/home/augustico/miniconda3/envs/ncl_stable/lib -L/home/augustico/miniconda3/envs/ncl_stable/lib -o arex02 arex02.f -L/home/augustico/miniconda3/envs/ncl_stable/lib -L/usr/X11R6/lib64 -lncarg -lncarg_gks -lncarg_c -lX11 -lXext -lcairo -lXrender -lfontconfig -lpixman-1 -lfreetype -lexpat -lpng -lz -lbz2
> /home/conda/feedstock_root/build_artifacts/ncl_1585160596974/_build_env/bin/x86_64-conda_cos6-linux-gnu-gfortran: Command not found.
>
> The compile and link failed.
> #############################################################################################################################################
> Same happens with ncargf77:
>
> (ncl_stable) augustico at octavioamg-gl552jx:~$ ncargf77
> /home/conda/feedstock_root/build_artifacts/ncl_1585160596974/_build_env/bin/x86_64-conda_cos6-linux-gnu-gfortran -fPIC -fno-second-underscore -fno-range-check -fopenmp -O -L/home/augustico/miniconda3/envs/ncl_stable/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/augustico/miniconda3/envs/ncl_stable/lib -Wl,-rpath-link,/home/augustico/miniconda3/envs/ncl_stable/lib -L/home/augustico/miniconda3/envs/ncl_stable/lib -L/home/augustico/miniconda3/envs/ncl_stable/lib -L/usr/X11R6/lib64 -lncarg -lncarg_gks -lncarg_c -lX11 -lXext -lcairo -lXrender -lfontconfig -lpixman-1 -lfreetype -lexpat -lpng -lz -lbz2
> /home/conda/feedstock_root/build_artifacts/ncl_1585160596974/_build_env/bin/x86_64-conda_cos6-linux-gnu-gfortran: Command not found.
> #############################################################################################################################################
>
> conda list -n ncl_stable
> (ncl_stable) augustico at octavioamg-gl552jx:~$ conda list -n ncl_stable
> # packages in environment at /home/augustico/miniconda3/envs/ncl_stable:
> #
> # Name Version Build Channel
> _libgcc_mutex 0.1 conda_forge conda-forge
> _openmp_mutex 4.5 1_llvm conda-forge
> boost-cpp 1.72.0 h8e57a91_0 conda-forge
> bzip2 1.0.8 h516909a_2 conda-forge
> ca-certificates 2019.11.28 hecc5488_0 conda-forge
> cairo 1.16.0 hcf35c78_1003 conda-forge
> certifi 2019.11.28 py38h32f6830_1 conda-forge
> cfitsio 3.470 hb60a0a2_2 conda-forge
> curl 7.68.0 hf8cf82a_0 conda-forge
> esmf 8.0.0 nompi_he6d0a24_5 conda-forge
> expat 2.2.9 he1b5a44_2 conda-forge
> fontconfig 2.13.1 h86ecdb6_1001 conda-forge
> freetype 2.10.1 he06d7ca_0 conda-forge
> freexl 1.0.5 h14c3975_1002 conda-forge
> geos 3.8.1 he1b5a44_0 conda-forge
> geotiff 1.5.1 hcbe54f9_9 conda-forge
> gettext 0.19.8.1 hc5be6a0_1002 conda-forge
> giflib 5.2.1 h516909a_2 conda-forge
> glib 2.58.3 py38h73cb85d_1003 conda-forge
> gsl 2.6 h294904e_0 conda-forge
> hdf4 4.2.13 hf30be14_1003 conda-forge
> hdf5 1.10.5 nompi_h3c11f04_1104 conda-forge
> hdfeos2 2.20 h64bfcee_1000 conda-forge
> hdfeos5 5.1.16 h8b6279f_5 conda-forge
> icu 64.2 he1b5a44_1 conda-forge
> jasper 1.900.1 h07fcdf6_1006 conda-forge
> jpeg 9c h14c3975_1001 conda-forge
> json-c 0.13.1 h14c3975_1001 conda-forge
> kealib 1.4.12 hec59c27_0 conda-forge
> krb5 1.16.4 h2fd8d38_0 conda-forge
> ld_impl_linux-64 2.34 h53a641e_0 conda-forge
> libblas 3.8.0 16_openblas conda-forge
> libcblas 3.8.0 16_openblas conda-forge
> libcurl 7.68.0 hda55be3_0 conda-forge
> libdap4 3.20.4 hd3bb157_0 conda-forge
> libedit 3.1.20170329 hf8c457e_1001 conda-forge
> libffi 3.2.1 he1b5a44_1007 conda-forge
> libgcc-ng 9.2.0 h24d8f2e_2 conda-forge
> libgdal 3.0.4 hce44138_2 conda-forge
> libgfortran-ng 7.3.0 hdf63c60_5 conda-forge
> libiconv 1.15 h516909a_1006 conda-forge
> libkml 1.3.0 hb574062_1011 conda-forge
> libnetcdf 4.7.3 nompi_h9f9fd6a_101 conda-forge
> libopenblas 0.3.9 h5ec1e0e_0 conda-forge
> libpng 1.6.37 hed695b0_1 conda-forge
> libpq 12.2 hae5116b_0 conda-forge
> libspatialite 4.3.0a heb269f5_1037 conda-forge
> libssh2 1.8.2 h22169c7_2 conda-forge
> libstdcxx-ng 9.2.0 hdf63c60_2 conda-forge
> libtiff 4.1.0 hc7e4089_6 conda-forge
> libuuid 2.32.1 h14c3975_1000 conda-forge
> libwebp 1.0.2 h56121f0_5 conda-forge
> libwebp-base 1.1.0 2 conda-forge
> libxcb 1.13 h14c3975_1002 conda-forge
> libxml2 2.9.10 hee79883_0 conda-forge
> llvm-openmp 9.0.1 hc9558a2_2 conda-forge
> lz4-c 1.8.3 he1b5a44_1001 conda-forge
> ncl 6.6.2 hda7772a_18 conda-forge
> ncurses 6.1 hf484d3e_1002 conda-forge
> netcdf-fortran 4.5.2 nompi_h09cde99_103 conda-forge
> openjpeg 2.3.1 h981e76c_3 conda-forge
> openssl 1.1.1e h516909a_0 conda-forge
> pcre 8.44 he1b5a44_0 conda-forge
> pip 20.0.2 py_2 conda-forge
> pixman 0.38.0 h516909a_1003 conda-forge
> poppler 0.67.0 h14e79db_8 conda-forge
> poppler-data 0.4.9 1 conda-forge
> postgresql 12.2 hf1211e9_0 conda-forge
> proj 6.3.1 hc80f0dc_1 conda-forge
> pthread-stubs 0.4 h14c3975_1001 conda-forge
> python 3.8.2 h8356626_5_cpython conda-forge
> python_abi 3.8 1_cp38 conda-forge
> readline 8.0 hf8c457e_0 conda-forge
> setuptools 46.1.3 py38h32f6830_0 conda-forge
> sqlite 3.30.1 hcee41ef_0 conda-forge
> tbb 2018.0.5 h2d50403_0 conda-forge
> tiledb 1.7.0 hcde45ca_2 conda-forge
> tk 8.6.10 hed695b0_0 conda-forge
> tzcode 2019a h516909a_1002 conda-forge
> udunits2 2.2.27.6 h4e0c4b3_1001 conda-forge
> wheel 0.34.2 py_1 conda-forge
> xerces-c 3.2.2 h8412b87_1004 conda-forge
> xorg-imake 1.0.7 0 conda-forge
> xorg-kbproto 1.0.7 h14c3975_1002 conda-forge
> xorg-libice 1.0.10 h516909a_0 conda-forge
> xorg-libsm 1.2.3 h84519dc_1000 conda-forge
> xorg-libx11 1.6.9 h516909a_0 conda-forge
> xorg-libxau 1.0.9 h14c3975_0 conda-forge
> xorg-libxaw 1.0.13 h14c3975_1002 conda-forge
> xorg-libxdmcp 1.1.3 h516909a_0 conda-forge
> xorg-libxext 1.3.4 h516909a_0 conda-forge
> xorg-libxmu 1.1.3 h516909a_0 conda-forge
> xorg-libxpm 3.5.13 h516909a_0 conda-forge
> xorg-libxrender 0.9.10 h516909a_1002 conda-forge
> xorg-libxt 1.1.5 h516909a_1003 conda-forge
> xorg-makedepend 1.0.6 he1b5a44_1 conda-forge
> xorg-renderproto 0.11.1 h14c3975_1002 conda-forge
> xorg-xextproto 7.3.0 h14c3975_1002 conda-forge
> xorg-xproto 7.0.31 h14c3975_1007 conda-forge
> xz 5.2.4 h516909a_1002 conda-forge
> zlib 1.2.11 h516909a_1006 conda-forge
> zstd 1.4.4 h3b9ef0a_2 conda-forge
> #############################################################################################################################################
> conda --version
> (ncl_stable) augustico at octavioamg-gl552jx:~$ conda --version
> conda 4.8.3
> ############################################################################################################################################
> which ncl
> (ncl_stable) augustico at octavioamg-gl552jx:~$ which ncl
> /home/augustico/miniconda3/envs/ncl_stable/bin/ncl
> ############################################################################################################################################
> ncl -V
> (ncl_stable) augustico at octavioamg-gl552jx:~$ ncl -V
> 6.6.2
> ############################################################################################################################################
> env | grep NCARG
> (ncl_stable) augustico at octavioamg-gl552jx:~$ env | grep NCARG
> NCARG_ROOT=/home/augustico/miniconda3/envs/ncl_stable
> ############################################################################################################################################
> (ncl_stable) augustico at octavioamg-gl552jx:~$ echo $PATH
> /home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable/bin:/home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable:/home/augustico/miniconda3/envs/ncl_stable/bin:/home/augustico/miniconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable
> ############################################################################################################################################
> (ncl_stable) augustico at octavioamg-gl552jx:~$ env
> SHELL=/bin/bash
> SESSION_MANAGER=local/octavioamg-gl552jx:@/tmp/.ICE-unix/1847,unix/octavioamg-gl552jx:/tmp/.ICE-unix/1847
> COLORTERM=truecolor
> XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/etc/xdg
> XDG_MENU_PREFIX=gnome-
> GNOME_DESKTOP_SESSION_ID=this-is-deprecated
> GTK_IM_MODULE=ibus
> CONDA_EXE=/home/augustico/miniconda3/bin/conda
> _CE_M=
> LANGUAGE=es_MX:es
> QT4_IM_MODULE=ibus
> GNOME_SHELL_SESSION_MODE=ubuntu
> SSH_AUTH_SOCK=/run/user/1000/keyring/ssh
> XMODIFIERS=@im=ibus
> DESKTOP_SESSION=ubuntu
> SSH_AGENT_PID=1763
> GTK_MODULES=gail:atk-bridge
> PWD=/home/augustico
> LOGNAME=augustico
> XDG_SESSION_DESKTOP=ubuntu
> XDG_SESSION_TYPE=x11
> CONDA_PREFIX=/home/augustico/miniconda3/envs/ncl_stable
> GPG_AGENT_INFO=/run/user/1000/gnupg/S.gpg-agent:0:1
> XAUTHORITY=/run/user/1000/gdm/Xauthority
> WINDOWPATH=2
> HOME=/home/augustico
> USERNAME=augustico
> IM_CONFIG_PHASE=1
> LANG=es_MX.UTF-8
> LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:
> XDG_CURRENT_DESKTOP=ubuntu:GNOME
> VTE_VERSION=5802
> CONDA_PROMPT_MODIFIER=(ncl_stable)
> GNOME_TERMINAL_SCREEN=/org/gnome/Terminal/screen/d6b58c54_4651_46d2_ae41_93fe597d6ef5
> CPL_ZIP_ENCODING=UTF-8
> INVOCATION_ID=0ff878323edf43feba7b72d34ab642f1
> MANAGERPID=1651
> CLUTTER_IM_MODULE=ibus
> LESSCLOSE=/usr/bin/lesspipe %s %s
> XDG_SESSION_CLASS=user
> TERM=xterm-256color
> _CE_CONDA=
> LESSOPEN=| /usr/bin/lesspipe %s
> USER=augustico
> UDUNITS2_XML_PATH=/home/augustico/miniconda3/envs/ncl_stable/share/udunits/udunits2.xml
> GNOME_TERMINAL_SERVICE=:1.237
> CONDA_SHLVL=2
> DISPLAY=:0
> SHLVL=1
> QT_IM_MODULE=ibus
> PROJ_LIB=/home/augustico/miniconda3/envs/ncl_stable/share/proj
> CONDA_PYTHON_EXE=/home/augustico/miniconda3/bin/python
> XDG_RUNTIME_DIR=/run/user/1000
> NCARG_ROOT=/home/augustico/miniconda3/envs/ncl_stable
> CONDA_DEFAULT_ENV=ncl_stable
> JOURNAL_STREAM=9:40387
> XDG_DATA_DIRS=/usr/share/ubuntu:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop
> GDAL_DATA=/home/augustico/miniconda3/envs/ncl_stable/share/gdal
> PATH=/home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable/bin:/home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable:/home/augustico/miniconda3/envs/ncl_stable/bin:/home/augustico/miniconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable
> GDMSESSION=ubuntu
> DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1000/bus
> CONDA_PREFIX_1=/home/augustico/miniconda3
> _=/usr/bin/env
> #############################################################################################################################################
>
>
> Octavio A. Morales González
> Thesis student
> Universidad nacional autónoma de México
> Facultad de Ingeniería
> _______________________________________________
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