[ncl-install] Help!

Octavio Morales oct_amg1289 at hotmail.com
Fri Mar 27 11:19:37 MDT 2020


Hi Kevin,

Yes, I need Ncar graphics to work. The graphics that I'm trying to compile are written in Fortran and I am trying to compile them using the ncargf77 command but when I do so the message that I attached appears.



________________________________
From: Kevin Hallock <hallock at ucar.edu>
Sent: Friday, March 27, 2020 11:09:37 AM
To: Octavio Morales <oct_amg1289 at hotmail.com>
Cc: ncl-install at ucar.edu <ncl-install at ucar.edu>
Subject: Re: [ncl-install] Help!

Hi Octavio,

I’m sorry to hear you’ve having trouble getting NCL and NCAR Graphics to work.

Are you specifically trying to use NCAR Graphics, or do you just need NCL? >From the terminal output you pasted below, it looks like NCL is already working; however, getting NCAR Graphics to work properly with a conda-provided Fortran compiler might require a bit more work.

Thanks,
Kevin

On Mar 26, 2020, at 9:28 PM, Octavio Morales via ncl-install <ncl-install at ucar.edu<mailto:ncl-install at ucar.edu>> wrote:

Hi,I have downloaded an installed NCL-NCAR using miniconda, but when I try to compile this message appears:

(ncl_stable) augustico at octavioamg-gl552jx:~$ ncargex arex02

NCAR Graphics Fortran  Example <arex02>

  Copying arex02.f

Compiling and linking...
/home/conda/feedstock_root/build_artifacts/ncl_1585160596974/_build_env/bin/x86_64-conda_cos6-linux-gnu-gfortran -fPIC -fno-second-underscore -fno-range-check -fopenmp -O -L/home/augustico/miniconda3/envs/ncl_stable/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/augustico/miniconda3/envs/ncl_stable/lib -Wl,-rpath-link,/home/augustico/miniconda3/envs/ncl_stable/lib -L/home/augustico/miniconda3/envs/ncl_stable/lib -o arex02 arex02.f -L/home/augustico/miniconda3/envs/ncl_stable/lib -L/usr/X11R6/lib64 -lncarg -lncarg_gks -lncarg_c -lX11 -lXext -lcairo -lXrender -lfontconfig -lpixman-1 -lfreetype -lexpat -lpng -lz -lbz2
/home/conda/feedstock_root/build_artifacts/ncl_1585160596974/_build_env/bin/x86_64-conda_cos6-linux-gnu-gfortran: Command not found.

The compile and link failed.
#############################################################################################################################################
Same happens with ncargf77:

(ncl_stable) augustico at octavioamg-gl552jx:~$ ncargf77
/home/conda/feedstock_root/build_artifacts/ncl_1585160596974/_build_env/bin/x86_64-conda_cos6-linux-gnu-gfortran -fPIC -fno-second-underscore -fno-range-check -fopenmp -O -L/home/augustico/miniconda3/envs/ncl_stable/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/augustico/miniconda3/envs/ncl_stable/lib -Wl,-rpath-link,/home/augustico/miniconda3/envs/ncl_stable/lib -L/home/augustico/miniconda3/envs/ncl_stable/lib -L/home/augustico/miniconda3/envs/ncl_stable/lib -L/usr/X11R6/lib64 -lncarg -lncarg_gks -lncarg_c -lX11 -lXext -lcairo -lXrender -lfontconfig -lpixman-1 -lfreetype -lexpat -lpng -lz -lbz2
/home/conda/feedstock_root/build_artifacts/ncl_1585160596974/_build_env/bin/x86_64-conda_cos6-linux-gnu-gfortran: Command not found.
#############################################################################################################################################


conda list -n ncl_stable

(ncl_stable) augustico at octavioamg-gl552jx:~$ conda list -n ncl_stable
# packages in environment at /home/augustico/miniconda3/envs/ncl_stable:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                      1_llvm    conda-forge
boost-cpp                 1.72.0               h8e57a91_0    conda-forge
bzip2                     1.0.8                h516909a_2    conda-forge
ca-certificates           2019.11.28           hecc5488_0    conda-forge
cairo                     1.16.0            hcf35c78_1003    conda-forge
certifi                   2019.11.28       py38h32f6830_1    conda-forge
cfitsio                   3.470                hb60a0a2_2    conda-forge
curl                      7.68.0               hf8cf82a_0    conda-forge
esmf                      8.0.0           nompi_he6d0a24_5    conda-forge
expat                     2.2.9                he1b5a44_2    conda-forge
fontconfig                2.13.1            h86ecdb6_1001    conda-forge
freetype                  2.10.1               he06d7ca_0    conda-forge
freexl                    1.0.5             h14c3975_1002    conda-forge
geos                      3.8.1                he1b5a44_0    conda-forge
geotiff                   1.5.1                hcbe54f9_9    conda-forge
gettext                   0.19.8.1          hc5be6a0_1002    conda-forge
giflib                    5.2.1                h516909a_2    conda-forge
glib                      2.58.3          py38h73cb85d_1003    conda-forge
gsl                       2.6                  h294904e_0    conda-forge
hdf4                      4.2.13            hf30be14_1003    conda-forge
hdf5                      1.10.5          nompi_h3c11f04_1104    conda-forge
hdfeos2                   2.20              h64bfcee_1000    conda-forge
hdfeos5                   5.1.16               h8b6279f_5    conda-forge
icu                       64.2                 he1b5a44_1    conda-forge
jasper                    1.900.1           h07fcdf6_1006    conda-forge
jpeg                      9c                h14c3975_1001    conda-forge
json-c                    0.13.1            h14c3975_1001    conda-forge
kealib                    1.4.12               hec59c27_0    conda-forge
krb5                      1.16.4               h2fd8d38_0    conda-forge
ld_impl_linux-64          2.34                 h53a641e_0    conda-forge
libblas                   3.8.0               16_openblas    conda-forge
libcblas                  3.8.0               16_openblas    conda-forge
libcurl                   7.68.0               hda55be3_0    conda-forge
libdap4                   3.20.4               hd3bb157_0    conda-forge
libedit                   3.1.20170329      hf8c457e_1001    conda-forge
libffi                    3.2.1             he1b5a44_1007    conda-forge
libgcc-ng                 9.2.0                h24d8f2e_2    conda-forge
libgdal                   3.0.4                hce44138_2    conda-forge
libgfortran-ng            7.3.0                hdf63c60_5    conda-forge
libiconv                  1.15              h516909a_1006    conda-forge
libkml                    1.3.0             hb574062_1011    conda-forge
libnetcdf                 4.7.3           nompi_h9f9fd6a_101    conda-forge
libopenblas               0.3.9                h5ec1e0e_0    conda-forge
libpng                    1.6.37               hed695b0_1    conda-forge
libpq                     12.2                 hae5116b_0    conda-forge
libspatialite             4.3.0a            heb269f5_1037    conda-forge
libssh2                   1.8.2                h22169c7_2    conda-forge
libstdcxx-ng              9.2.0                hdf63c60_2    conda-forge
libtiff                   4.1.0                hc7e4089_6    conda-forge
libuuid                   2.32.1            h14c3975_1000    conda-forge
libwebp                   1.0.2                h56121f0_5    conda-forge
libwebp-base              1.1.0                         2    conda-forge
libxcb                    1.13              h14c3975_1002    conda-forge
libxml2                   2.9.10               hee79883_0    conda-forge
llvm-openmp               9.0.1                hc9558a2_2    conda-forge
lz4-c                     1.8.3             he1b5a44_1001    conda-forge
ncl                       6.6.2               hda7772a_18    conda-forge
ncurses                   6.1               hf484d3e_1002    conda-forge
netcdf-fortran            4.5.2           nompi_h09cde99_103    conda-forge
openjpeg                  2.3.1                h981e76c_3    conda-forge
openssl                   1.1.1e               h516909a_0    conda-forge
pcre                      8.44                 he1b5a44_0    conda-forge
pip                       20.0.2                     py_2    conda-forge
pixman                    0.38.0            h516909a_1003    conda-forge
poppler                   0.67.0               h14e79db_8    conda-forge
poppler-data              0.4.9                         1    conda-forge
postgresql                12.2                 hf1211e9_0    conda-forge
proj                      6.3.1                hc80f0dc_1    conda-forge
pthread-stubs             0.4               h14c3975_1001    conda-forge
python                    3.8.2           h8356626_5_cpython    conda-forge
python_abi                3.8                      1_cp38    conda-forge
readline                  8.0                  hf8c457e_0    conda-forge
setuptools                46.1.3           py38h32f6830_0    conda-forge
sqlite                    3.30.1               hcee41ef_0    conda-forge
tbb                       2018.0.5             h2d50403_0    conda-forge
tiledb                    1.7.0                hcde45ca_2    conda-forge
tk                        8.6.10               hed695b0_0    conda-forge
tzcode                    2019a             h516909a_1002    conda-forge
udunits2                  2.2.27.6          h4e0c4b3_1001    conda-forge
wheel                     0.34.2                     py_1    conda-forge
xerces-c                  3.2.2             h8412b87_1004    conda-forge
xorg-imake                1.0.7                         0    conda-forge
xorg-kbproto              1.0.7             h14c3975_1002    conda-forge
xorg-libice               1.0.10               h516909a_0    conda-forge
xorg-libsm                1.2.3             h84519dc_1000    conda-forge
xorg-libx11               1.6.9                h516909a_0    conda-forge
xorg-libxau               1.0.9                h14c3975_0    conda-forge
xorg-libxaw               1.0.13            h14c3975_1002    conda-forge
xorg-libxdmcp             1.1.3                h516909a_0    conda-forge
xorg-libxext              1.3.4                h516909a_0    conda-forge
xorg-libxmu               1.1.3                h516909a_0    conda-forge
xorg-libxpm               3.5.13               h516909a_0    conda-forge
xorg-libxrender           0.9.10            h516909a_1002    conda-forge
xorg-libxt                1.1.5             h516909a_1003    conda-forge
xorg-makedepend           1.0.6                he1b5a44_1    conda-forge
xorg-renderproto          0.11.1            h14c3975_1002    conda-forge
xorg-xextproto            7.3.0             h14c3975_1002    conda-forge
xorg-xproto               7.0.31            h14c3975_1007    conda-forge
xz                        5.2.4             h516909a_1002    conda-forge
zlib                      1.2.11            h516909a_1006    conda-forge
zstd                      1.4.4                h3b9ef0a_2    conda-forge
#############################################################################################################################################

conda --version

(ncl_stable) augustico at octavioamg-gl552jx:~$ conda --version
conda 4.8.3
############################################################################################################################################

which ncl

(ncl_stable) augustico at octavioamg-gl552jx:~$ which ncl
/home/augustico/miniconda3/envs/ncl_stable/bin/ncl
############################################################################################################################################

ncl -V

(ncl_stable) augustico at octavioamg-gl552jx:~$ ncl -V
6.6.2
############################################################################################################################################

    env  | grep NCARG

(ncl_stable) augustico at octavioamg-gl552jx:~$ env  | grep NCARG
NCARG_ROOT=/home/augustico/miniconda3/envs/ncl_stable
############################################################################################################################################
(ncl_stable) augustico at octavioamg-gl552jx:~$ echo $PATH
/home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable/bin:/home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable:/home/augustico/miniconda3/envs/ncl_stable/bin:/home/augustico/miniconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable
############################################################################################################################################
(ncl_stable) augustico at octavioamg-gl552jx:~$ env
SHELL=/bin/bash
SESSION_MANAGER=local/octavioamg-gl552jx:@/tmp/.ICE-unix/1847,unix/octavioamg-gl552jx:/tmp/.ICE-unix/1847
COLORTERM=truecolor
XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/etc/xdg
XDG_MENU_PREFIX=gnome-
GNOME_DESKTOP_SESSION_ID=this-is-deprecated
GTK_IM_MODULE=ibus
CONDA_EXE=/home/augustico/miniconda3/bin/conda
_CE_M=
LANGUAGE=es_MX:es
QT4_IM_MODULE=ibus
GNOME_SHELL_SESSION_MODE=ubuntu
SSH_AUTH_SOCK=/run/user/1000/keyring/ssh
XMODIFIERS=@im=ibus
DESKTOP_SESSION=ubuntu
SSH_AGENT_PID=1763
GTK_MODULES=gail:atk-bridge
PWD=/home/augustico
LOGNAME=augustico
XDG_SESSION_DESKTOP=ubuntu
XDG_SESSION_TYPE=x11
CONDA_PREFIX=/home/augustico/miniconda3/envs/ncl_stable
GPG_AGENT_INFO=/run/user/1000/gnupg/S.gpg-agent:0:1
XAUTHORITY=/run/user/1000/gdm/Xauthority
WINDOWPATH=2
HOME=/home/augustico
USERNAME=augustico
IM_CONFIG_PHASE=1
LANG=es_MX.UTF-8
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:
XDG_CURRENT_DESKTOP=ubuntu:GNOME
VTE_VERSION=5802
CONDA_PROMPT_MODIFIER=(ncl_stable)
GNOME_TERMINAL_SCREEN=/org/gnome/Terminal/screen/d6b58c54_4651_46d2_ae41_93fe597d6ef5
CPL_ZIP_ENCODING=UTF-8
INVOCATION_ID=0ff878323edf43feba7b72d34ab642f1
MANAGERPID=1651
CLUTTER_IM_MODULE=ibus
LESSCLOSE=/usr/bin/lesspipe %s %s
XDG_SESSION_CLASS=user
TERM=xterm-256color
_CE_CONDA=
LESSOPEN=| /usr/bin/lesspipe %s
USER=augustico
UDUNITS2_XML_PATH=/home/augustico/miniconda3/envs/ncl_stable/share/udunits/udunits2.xml
GNOME_TERMINAL_SERVICE=:1.237
CONDA_SHLVL=2
DISPLAY=:0
SHLVL=1
QT_IM_MODULE=ibus
PROJ_LIB=/home/augustico/miniconda3/envs/ncl_stable/share/proj
CONDA_PYTHON_EXE=/home/augustico/miniconda3/bin/python
XDG_RUNTIME_DIR=/run/user/1000
NCARG_ROOT=/home/augustico/miniconda3/envs/ncl_stable
CONDA_DEFAULT_ENV=ncl_stable
JOURNAL_STREAM=9:40387
XDG_DATA_DIRS=/usr/share/ubuntu:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop
GDAL_DATA=/home/augustico/miniconda3/envs/ncl_stable/share/gdal
PATH=/home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable/bin:/home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable:/home/augustico/miniconda3/envs/ncl_stable/bin:/home/augustico/miniconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable
GDMSESSION=ubuntu
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1000/bus
CONDA_PREFIX_1=/home/augustico/miniconda3
_=/usr/bin/env
#############################################################################################################################################


Octavio A. Morales González
Thesis student
Universidad nacional autónoma de México
Facultad de Ingeniería
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