[ncl-install] Help!
Octavio Morales
oct_amg1289 at hotmail.com
Thu Mar 26 21:28:43 MDT 2020
Hi,I have downloaded an installed NCL-NCAR using miniconda, but when I try to compile this message appears:
(ncl_stable) augustico at octavioamg-gl552jx:~$ ncargex arex02
NCAR Graphics Fortran Example <arex02>
Copying arex02.f
Compiling and linking...
/home/conda/feedstock_root/build_artifacts/ncl_1585160596974/_build_env/bin/x86_64-conda_cos6-linux-gnu-gfortran -fPIC -fno-second-underscore -fno-range-check -fopenmp -O -L/home/augustico/miniconda3/envs/ncl_stable/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/augustico/miniconda3/envs/ncl_stable/lib -Wl,-rpath-link,/home/augustico/miniconda3/envs/ncl_stable/lib -L/home/augustico/miniconda3/envs/ncl_stable/lib -o arex02 arex02.f -L/home/augustico/miniconda3/envs/ncl_stable/lib -L/usr/X11R6/lib64 -lncarg -lncarg_gks -lncarg_c -lX11 -lXext -lcairo -lXrender -lfontconfig -lpixman-1 -lfreetype -lexpat -lpng -lz -lbz2
/home/conda/feedstock_root/build_artifacts/ncl_1585160596974/_build_env/bin/x86_64-conda_cos6-linux-gnu-gfortran: Command not found.
The compile and link failed.
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Same happens with ncargf77:
(ncl_stable) augustico at octavioamg-gl552jx:~$ ncargf77
/home/conda/feedstock_root/build_artifacts/ncl_1585160596974/_build_env/bin/x86_64-conda_cos6-linux-gnu-gfortran -fPIC -fno-second-underscore -fno-range-check -fopenmp -O -L/home/augustico/miniconda3/envs/ncl_stable/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/augustico/miniconda3/envs/ncl_stable/lib -Wl,-rpath-link,/home/augustico/miniconda3/envs/ncl_stable/lib -L/home/augustico/miniconda3/envs/ncl_stable/lib -L/home/augustico/miniconda3/envs/ncl_stable/lib -L/usr/X11R6/lib64 -lncarg -lncarg_gks -lncarg_c -lX11 -lXext -lcairo -lXrender -lfontconfig -lpixman-1 -lfreetype -lexpat -lpng -lz -lbz2
/home/conda/feedstock_root/build_artifacts/ncl_1585160596974/_build_env/bin/x86_64-conda_cos6-linux-gnu-gfortran: Command not found.
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conda list -n ncl_stable
(ncl_stable) augustico at octavioamg-gl552jx:~$ conda list -n ncl_stable
# packages in environment at /home/augustico/miniconda3/envs/ncl_stable:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 1_llvm conda-forge
boost-cpp 1.72.0 h8e57a91_0 conda-forge
bzip2 1.0.8 h516909a_2 conda-forge
ca-certificates 2019.11.28 hecc5488_0 conda-forge
cairo 1.16.0 hcf35c78_1003 conda-forge
certifi 2019.11.28 py38h32f6830_1 conda-forge
cfitsio 3.470 hb60a0a2_2 conda-forge
curl 7.68.0 hf8cf82a_0 conda-forge
esmf 8.0.0 nompi_he6d0a24_5 conda-forge
expat 2.2.9 he1b5a44_2 conda-forge
fontconfig 2.13.1 h86ecdb6_1001 conda-forge
freetype 2.10.1 he06d7ca_0 conda-forge
freexl 1.0.5 h14c3975_1002 conda-forge
geos 3.8.1 he1b5a44_0 conda-forge
geotiff 1.5.1 hcbe54f9_9 conda-forge
gettext 0.19.8.1 hc5be6a0_1002 conda-forge
giflib 5.2.1 h516909a_2 conda-forge
glib 2.58.3 py38h73cb85d_1003 conda-forge
gsl 2.6 h294904e_0 conda-forge
hdf4 4.2.13 hf30be14_1003 conda-forge
hdf5 1.10.5 nompi_h3c11f04_1104 conda-forge
hdfeos2 2.20 h64bfcee_1000 conda-forge
hdfeos5 5.1.16 h8b6279f_5 conda-forge
icu 64.2 he1b5a44_1 conda-forge
jasper 1.900.1 h07fcdf6_1006 conda-forge
jpeg 9c h14c3975_1001 conda-forge
json-c 0.13.1 h14c3975_1001 conda-forge
kealib 1.4.12 hec59c27_0 conda-forge
krb5 1.16.4 h2fd8d38_0 conda-forge
ld_impl_linux-64 2.34 h53a641e_0 conda-forge
libblas 3.8.0 16_openblas conda-forge
libcblas 3.8.0 16_openblas conda-forge
libcurl 7.68.0 hda55be3_0 conda-forge
libdap4 3.20.4 hd3bb157_0 conda-forge
libedit 3.1.20170329 hf8c457e_1001 conda-forge
libffi 3.2.1 he1b5a44_1007 conda-forge
libgcc-ng 9.2.0 h24d8f2e_2 conda-forge
libgdal 3.0.4 hce44138_2 conda-forge
libgfortran-ng 7.3.0 hdf63c60_5 conda-forge
libiconv 1.15 h516909a_1006 conda-forge
libkml 1.3.0 hb574062_1011 conda-forge
libnetcdf 4.7.3 nompi_h9f9fd6a_101 conda-forge
libopenblas 0.3.9 h5ec1e0e_0 conda-forge
libpng 1.6.37 hed695b0_1 conda-forge
libpq 12.2 hae5116b_0 conda-forge
libspatialite 4.3.0a heb269f5_1037 conda-forge
libssh2 1.8.2 h22169c7_2 conda-forge
libstdcxx-ng 9.2.0 hdf63c60_2 conda-forge
libtiff 4.1.0 hc7e4089_6 conda-forge
libuuid 2.32.1 h14c3975_1000 conda-forge
libwebp 1.0.2 h56121f0_5 conda-forge
libwebp-base 1.1.0 2 conda-forge
libxcb 1.13 h14c3975_1002 conda-forge
libxml2 2.9.10 hee79883_0 conda-forge
llvm-openmp 9.0.1 hc9558a2_2 conda-forge
lz4-c 1.8.3 he1b5a44_1001 conda-forge
ncl 6.6.2 hda7772a_18 conda-forge
ncurses 6.1 hf484d3e_1002 conda-forge
netcdf-fortran 4.5.2 nompi_h09cde99_103 conda-forge
openjpeg 2.3.1 h981e76c_3 conda-forge
openssl 1.1.1e h516909a_0 conda-forge
pcre 8.44 he1b5a44_0 conda-forge
pip 20.0.2 py_2 conda-forge
pixman 0.38.0 h516909a_1003 conda-forge
poppler 0.67.0 h14e79db_8 conda-forge
poppler-data 0.4.9 1 conda-forge
postgresql 12.2 hf1211e9_0 conda-forge
proj 6.3.1 hc80f0dc_1 conda-forge
pthread-stubs 0.4 h14c3975_1001 conda-forge
python 3.8.2 h8356626_5_cpython conda-forge
python_abi 3.8 1_cp38 conda-forge
readline 8.0 hf8c457e_0 conda-forge
setuptools 46.1.3 py38h32f6830_0 conda-forge
sqlite 3.30.1 hcee41ef_0 conda-forge
tbb 2018.0.5 h2d50403_0 conda-forge
tiledb 1.7.0 hcde45ca_2 conda-forge
tk 8.6.10 hed695b0_0 conda-forge
tzcode 2019a h516909a_1002 conda-forge
udunits2 2.2.27.6 h4e0c4b3_1001 conda-forge
wheel 0.34.2 py_1 conda-forge
xerces-c 3.2.2 h8412b87_1004 conda-forge
xorg-imake 1.0.7 0 conda-forge
xorg-kbproto 1.0.7 h14c3975_1002 conda-forge
xorg-libice 1.0.10 h516909a_0 conda-forge
xorg-libsm 1.2.3 h84519dc_1000 conda-forge
xorg-libx11 1.6.9 h516909a_0 conda-forge
xorg-libxau 1.0.9 h14c3975_0 conda-forge
xorg-libxaw 1.0.13 h14c3975_1002 conda-forge
xorg-libxdmcp 1.1.3 h516909a_0 conda-forge
xorg-libxext 1.3.4 h516909a_0 conda-forge
xorg-libxmu 1.1.3 h516909a_0 conda-forge
xorg-libxpm 3.5.13 h516909a_0 conda-forge
xorg-libxrender 0.9.10 h516909a_1002 conda-forge
xorg-libxt 1.1.5 h516909a_1003 conda-forge
xorg-makedepend 1.0.6 he1b5a44_1 conda-forge
xorg-renderproto 0.11.1 h14c3975_1002 conda-forge
xorg-xextproto 7.3.0 h14c3975_1002 conda-forge
xorg-xproto 7.0.31 h14c3975_1007 conda-forge
xz 5.2.4 h516909a_1002 conda-forge
zlib 1.2.11 h516909a_1006 conda-forge
zstd 1.4.4 h3b9ef0a_2 conda-forge
#############################################################################################################################################
conda --version
(ncl_stable) augustico at octavioamg-gl552jx:~$ conda --version
conda 4.8.3
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which ncl
(ncl_stable) augustico at octavioamg-gl552jx:~$ which ncl
/home/augustico/miniconda3/envs/ncl_stable/bin/ncl
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ncl -V
(ncl_stable) augustico at octavioamg-gl552jx:~$ ncl -V
6.6.2
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env | grep NCARG
(ncl_stable) augustico at octavioamg-gl552jx:~$ env | grep NCARG
NCARG_ROOT=/home/augustico/miniconda3/envs/ncl_stable
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(ncl_stable) augustico at octavioamg-gl552jx:~$ echo $PATH
/home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable/bin:/home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable:/home/augustico/miniconda3/envs/ncl_stable/bin:/home/augustico/miniconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable
############################################################################################################################################
(ncl_stable) augustico at octavioamg-gl552jx:~$ env
SHELL=/bin/bash
SESSION_MANAGER=local/octavioamg-gl552jx:@/tmp/.ICE-unix/1847,unix/octavioamg-gl552jx:/tmp/.ICE-unix/1847
COLORTERM=truecolor
XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/etc/xdg
XDG_MENU_PREFIX=gnome-
GNOME_DESKTOP_SESSION_ID=this-is-deprecated
GTK_IM_MODULE=ibus
CONDA_EXE=/home/augustico/miniconda3/bin/conda
_CE_M=
LANGUAGE=es_MX:es
QT4_IM_MODULE=ibus
GNOME_SHELL_SESSION_MODE=ubuntu
SSH_AUTH_SOCK=/run/user/1000/keyring/ssh
XMODIFIERS=@im=ibus
DESKTOP_SESSION=ubuntu
SSH_AGENT_PID=1763
GTK_MODULES=gail:atk-bridge
PWD=/home/augustico
LOGNAME=augustico
XDG_SESSION_DESKTOP=ubuntu
XDG_SESSION_TYPE=x11
CONDA_PREFIX=/home/augustico/miniconda3/envs/ncl_stable
GPG_AGENT_INFO=/run/user/1000/gnupg/S.gpg-agent:0:1
XAUTHORITY=/run/user/1000/gdm/Xauthority
WINDOWPATH=2
HOME=/home/augustico
USERNAME=augustico
IM_CONFIG_PHASE=1
LANG=es_MX.UTF-8
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:
XDG_CURRENT_DESKTOP=ubuntu:GNOME
VTE_VERSION=5802
CONDA_PROMPT_MODIFIER=(ncl_stable)
GNOME_TERMINAL_SCREEN=/org/gnome/Terminal/screen/d6b58c54_4651_46d2_ae41_93fe597d6ef5
CPL_ZIP_ENCODING=UTF-8
INVOCATION_ID=0ff878323edf43feba7b72d34ab642f1
MANAGERPID=1651
CLUTTER_IM_MODULE=ibus
LESSCLOSE=/usr/bin/lesspipe %s %s
XDG_SESSION_CLASS=user
TERM=xterm-256color
_CE_CONDA=
LESSOPEN=| /usr/bin/lesspipe %s
USER=augustico
UDUNITS2_XML_PATH=/home/augustico/miniconda3/envs/ncl_stable/share/udunits/udunits2.xml
GNOME_TERMINAL_SERVICE=:1.237
CONDA_SHLVL=2
DISPLAY=:0
SHLVL=1
QT_IM_MODULE=ibus
PROJ_LIB=/home/augustico/miniconda3/envs/ncl_stable/share/proj
CONDA_PYTHON_EXE=/home/augustico/miniconda3/bin/python
XDG_RUNTIME_DIR=/run/user/1000
NCARG_ROOT=/home/augustico/miniconda3/envs/ncl_stable
CONDA_DEFAULT_ENV=ncl_stable
JOURNAL_STREAM=9:40387
XDG_DATA_DIRS=/usr/share/ubuntu:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop
GDAL_DATA=/home/augustico/miniconda3/envs/ncl_stable/share/gdal
PATH=/home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable/bin:/home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable:/home/augustico/miniconda3/envs/ncl_stable/bin:/home/augustico/miniconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/augustico/miniconda3/envs/ncl_stable/home/augustico/miniconda3/envs/ncl_stable
GDMSESSION=ubuntu
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1000/bus
CONDA_PREFIX_1=/home/augustico/miniconda3
_=/usr/bin/env
#############################################################################################################################################
Octavio A. Morales González
Thesis student
Universidad nacional autónoma de México
Facultad de Ingeniería
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