[ncl-install] NCL install issue
Vanessa Vincente
vincente at ucar.edu
Mon Apr 20 11:38:56 MDT 2020
Sure thing, thanks!
On Mon, Apr 20, 2020 at 11:33 AM Dave Allured - NOAA Affiliate <
dave.allured at noaa.gov> wrote:
> Glad it worked. Please reply to the mailing list so that others searching
> for this solution will know what worked. Thanks.
>
>
> On Mon, Apr 20, 2020 at 11:26 AM Vanessa Vincente <vincente at ucar.edu>
> wrote:
>
>> Hello,
>>
>> I have commented out the export DISPLAY, PATH, and NCARG_ROOT commands.
>> I ran 'xterm' and an X11 terminal window popped up, thank you!
>>
>> Cheers,
>> Vanessa
>>
>> On Mon, Apr 20, 2020 at 8:34 AM Ted Mansell <ted.mansell at noaa.gov> wrote:
>>
>>> Hi,
>>> Current Macs should not set DISPLAY at all -- it is automatically set up
>>> by the system. Try unsetting DISPLAY or comment the export command and
>>> start a new terminal. Then just try to run 'xterm' to test if X11 opens a
>>> terminal window.
>>> Hope that helps.
>>> -- Ted
>>>
>>> ___________________________________________________
>>> | Edward Mansell <ted.mansell at noaa.gov>
>>> | National Severe Storms Laboratory
>>> | 120 David L. Boren Blvd.
>>> | Norman, OK 73072
>>> | Phone: (405) 325-6177
>>> | FAX: (405) 325-2316
>>> |
>>>
>>> |------------------------------------------------------------------------------------
>>> |
>>> | "The contents of this message are mine personally and
>>> | do not reflect any position of the U.S. Government or NOAA."
>>> |
>>>
>>> |------------------------------------------------------------------------------------
>>>
>>> > On Apr 20, 2020, at 9:16 AM, Vanessa Vincente via ncl-install <
>>> ncl-install at ucar.edu> wrote:
>>> >
>>> > Hello,
>>> >
>>> > I checked to see if XQuartz was installed on my laptop. I have
>>> XQuartz 2.7.11 installed.
>>> >
>>> > I tried the NCL command and still get the same errors:
>>> > Copyright (C) 1995-2019 - All Rights Reserved
>>> > University Corporation for Atmospheric Research
>>> > NCAR Command Language Version 6.6.2
>>> > The use of this software is governed by a License Agreement.
>>> > See http://www.ncl.ucar.edu/ for more details.
>>> > GKS ERROR NUMBER -208 ISSUED FROM SUBROUTINE GOPWK :
>>> > --X driver error: DISPLAY environment variable not set
>>> > GKS ERROR NUMBER 25 ISSUED FROM SUBROUTINE GESC :
>>> > --SPECIFIED WORKSTATION IS NOT OPEN
>>> > fatal:Workstation with PID#8 is not open
>>> > fatal:Unable to open Workstation-Can't Create
>>> > fatal:Unable to access object with id:-4
>>> > fatal:_NhlCreate:Invalid Parent id #-4
>>> > fatal:PID #-4 can't be found in NhlSetValues
>>> > fatal:NhlDraw: Invalid Layer Id: -4
>>> > fatal:Unable to update Workstation with PID#-4
>>> > fatal:Unable to clear Workstation with PID#-4
>>> > fatal:["Execute.c":8637]:Execute: Error occurred at or near line 2742
>>> in file $NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl
>>> >
>>> > fatal:["Execute.c":8637]:Execute: Error occurred at or near line 10231
>>> in file $NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl
>>> >
>>> > fatal:["Execute.c":8637]:Execute: Error occurred at or near line 20 in
>>> file
>>> /Users/Vanessa/miniconda3/envs/ncl_stable/lib/ncarg/nclex/gsun/gsun02n.ncl
>>> >
>>> >
>>> > I tried the help page for setting the Display environment.
>>> > Below is a copy of my .bash_profile I edited:
>>> >
>>> >
>>> > # >>> conda initialize >>>
>>> > # !! Contents within this block are managed by 'conda init' !!
>>> > __conda_setup="$('/Users/Vanessa/miniconda3/bin/conda' 'shell.bash'
>>> 'hook' 2> /dev/null)"
>>> > if [ $? -eq 0 ]; then
>>> > eval "$__conda_setup"
>>> > else
>>> > if [ -f "/Users/Vanessa/miniconda3/etc/profile.d/conda.sh" ]; then
>>> > . "/Users/Vanessa/miniconda3/etc/profile.d/conda.sh"
>>> > else
>>> > export PATH="/Users/Vanessa/miniconda3/bin:$PATH"
>>> > fi
>>> > fi
>>> > unset __conda_setup
>>> > # <<< conda initialize <<<
>>> >
>>> > # Settings for NCL
>>> > export NCARG_ROOT=/Users/Vanessa/miniconda3/envs/ncl_stable/bin/ncl
>>> > export PATH=$NCARG_ROOT/bin:$PATH
>>> > export DISPLAY=Vanessas-MacBook-Pro.local
>>> > ~
>>> >
>>> > Is there another step I can try to resolve the issue?
>>> >
>>> > Thanks!
>>> > Vanessa
>>> >
>>> >
>>> > On Sun, Apr 19, 2020 at 10:45 PM Dave Allured - NOAA Affiliate <
>>> dave.allured at noaa.gov> wrote:
>>> > I think that you may not have installed XQuartz properly. Please
>>> follow the instructions under "Install XQuartz" on this page:
>>> >
>>> > http://www.ncl.ucar.edu/Download/macosx.shtml
>>> >
>>> > Make sure that after downloading the Xquartz.dmg file, you double
>>> click on this file and complete the installation procedure. You may also
>>> need to restart your Mac after the install procedure. Then retry the ncl
>>> test command.
>>> >
>>> >
>>> > On Sun, Apr 19, 2020 at 9:02 PM Vanessa Vincente via ncl-install <
>>> ncl-install at ucar.edu> wrote:
>>> > Hello,
>>> >
>>> > I am trying to install NCL on my macOS High Sierra laptop and I am
>>> having issues with testing NCL.
>>> >
>>> > I have installed miniconda:
>>> > conda -V returns "conda 4.8.3"
>>> >
>>> > I have created the conda environment and called it "ncl_stable"
>>> >
>>> > I am testing NCL, step 1:
>>> > ncl -V returns "6.6.2"
>>> >
>>> > The issue I have is in step 2:
>>> > ncl $NCARG_ROOT/lib/ncarg/nclex/gsun/gsun02n.ncl
>>> >
>>> > this returns...
>>> > Copyright (C) 1995-2019 - All Rights Reserved
>>> > University Corporation for Atmospheric Research
>>> > NCAR Command Language Version 6.6.2
>>> > The use of this software is governed by a License Agreement.
>>> > See http://www.ncl.ucar.edu/ for more details.
>>> > GKS ERROR NUMBER -208 ISSUED FROM SUBROUTINE GOPWK :
>>> > --X driver error: DISPLAY environment variable not set
>>> > GKS ERROR NUMBER 25 ISSUED FROM SUBROUTINE GESC :
>>> > --SPECIFIED WORKSTATION IS NOT OPEN
>>> > fatal:Workstation with PID#8 is not open
>>> > fatal:Unable to open Workstation-Can't Create
>>> > fatal:Unable to access object with id:-4
>>> > fatal:_NhlCreate:Invalid Parent id #-4
>>> > fatal:PID #-4 can't be found in NhlSetValues
>>> > fatal:NhlDraw: Invalid Layer Id: -4
>>> > fatal:Unable to update Workstation with PID#-4
>>> > fatal:Unable to clear Workstation with PID#-4
>>> > fatal:["Execute.c":8637]:Execute: Error occurred at or near line 2742
>>> in file $NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl
>>> >
>>> > fatal:["Execute.c":8637]:Execute: Error occurred at or near line 10231
>>> in file $NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl
>>> >
>>> > fatal:["Execute.c":8637]:Execute: Error occurred at or near line 20 in
>>> file
>>> /Users/Vanessa/miniconda3/envs/ncl_stable/lib/ncarg/nclex/gsun/gsun02n.ncl
>>> >
>>> > Below is the output requested from help page:
>>> > (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ conda list -n ncl_stable
>>> > # packages in environment at /Users/Vanessa/miniconda3/envs/ncl_stable:
>>> > #
>>> > # Name Version Build Channel
>>> > boost-cpp 1.72.0 hdf9ef73_0
>>> conda-forge
>>> > bzip2 1.0.8 h0b31af3_2
>>> conda-forge
>>> > ca-certificates 2020.4.5.1 hecc5488_0
>>> conda-forge
>>> > cairo 1.16.0 hec6a9b0_1003
>>> conda-forge
>>> > certifi 2020.4.5.1 py38h32f6830_0
>>> conda-forge
>>> > cfitsio 3.470 h84d2f63_2
>>> conda-forge
>>> > curl 7.69.1 h2d98d24_0
>>> conda-forge
>>> > esmf 8.0.0 nompi_hee103b1_6
>>> conda-forge
>>> > expat 2.2.9 h4a8c4bd_2
>>> conda-forge
>>> > fontconfig 2.13.1 h6b1039f_1001
>>> conda-forge
>>> > freetype 2.10.1 h8da9a1a_0
>>> conda-forge
>>> > freexl 1.0.5 h1de35cc_1002
>>> conda-forge
>>> > geos 3.8.1 h4a8c4bd_0
>>> conda-forge
>>> > geotiff 1.5.1 hd8796ba_10
>>> conda-forge
>>> > gettext 0.19.8.1 h46ab8bc_1002
>>> conda-forge
>>> > giflib 5.2.1 h0b31af3_2
>>> conda-forge
>>> > glib 2.64.2 h577aef8_0
>>> conda-forge
>>> > gsl 2.6 ha2d443c_0
>>> conda-forge
>>> > hdf4 4.2.13 h84186c3_1003
>>> conda-forge
>>> > hdf5 1.10.5 nompi_h3e39495_1104
>>> conda-forge
>>> > hdfeos2 2.20 h207910d_1000
>>> conda-forge
>>> > hdfeos5 5.1.16 h60f75e3_5
>>> conda-forge
>>> > icu 64.2 h6de7cb9_1
>>> conda-forge
>>> > jasper 1.900.1 h636a363_1006
>>> conda-forge
>>> > jpeg 9c h1de35cc_1001
>>> conda-forge
>>> > json-c 0.13.1 h1de35cc_1001
>>> conda-forge
>>> > kealib 1.4.13 h2324030_0
>>> conda-forge
>>> > krb5 1.17.1 h1752a42_0
>>> conda-forge
>>> > libblas 3.8.0 14_openblas
>>> conda-forge
>>> > libcblas 3.8.0 14_openblas
>>> conda-forge
>>> > libcurl 7.69.1 hc0b9707_0
>>> conda-forge
>>> > libcxx 10.0.0 0
>>> conda-forge
>>> > libdap4 3.20.4 habf5908_0
>>> conda-forge
>>> > libedit 3.1.20170329 hcfe32e1_1001
>>> conda-forge
>>> > libffi 3.2.1 h4a8c4bd_1007
>>> conda-forge
>>> > libgdal 3.0.4 ha92c1e4_6
>>> conda-forge
>>> > libgfortran 4.0.0 2
>>> conda-forge
>>> > libiconv 1.15 h0b31af3_1006
>>> conda-forge
>>> > libkml 1.3.0 h169b8f9_1011
>>> conda-forge
>>> > libnetcdf 4.7.4 nompi_he461dc0_101
>>> conda-forge
>>> > libopenblas 0.3.7 h3d69b6c_4
>>> conda-forge
>>> > libpng 1.6.37 hbbe82c9_1
>>> conda-forge
>>> > libpq 12.2 h489d428_1
>>> conda-forge
>>> > libspatialite 4.3.0a h658e6c1_1038
>>> conda-forge
>>> > libssh2 1.8.2 hcdc9a53_2
>>> conda-forge
>>> > libtiff 4.1.0 h2ae36a8_6
>>> conda-forge
>>> > libwebp-base 1.1.0 h0b31af3_3
>>> conda-forge
>>> > libxml2 2.9.10 h53d96d6_0
>>> conda-forge
>>> > llvm-openmp 8.0.1 h770b8ee_0
>>> conda-forge
>>> > lz4-c 1.9.2 h4a8c4bd_0
>>> conda-forge
>>> > ncl 6.6.2 h0197cca_20
>>> conda-forge
>>> > ncurses 6.1 h0a44026_1002
>>> conda-forge
>>> > netcdf-fortran 4.5.2 nompi_h0361502_104
>>> conda-forge
>>> > openjpeg 2.3.1 h254dc36_3
>>> conda-forge
>>> > openmp 8.0.1 0
>>> conda-forge
>>> > openssl 1.1.1f h0b31af3_0
>>> conda-forge
>>> > pcre 8.44 h4a8c4bd_0
>>> conda-forge
>>> > pip 20.0.2 py_2
>>> conda-forge
>>> > pixman 0.38.0 h01d97ff_1003
>>> conda-forge
>>> > poppler 0.67.0 h16886b5_8
>>> conda-forge
>>> > poppler-data 0.4.9 1
>>> conda-forge
>>> > postgresql 12.2 h62ab893_1
>>> conda-forge
>>> > proj 7.0.0 hbce2d5c_3
>>> conda-forge
>>> > python 3.8.2 hd5f0129_6_cpython
>>> conda-forge
>>> > python_abi 3.8 1_cp38
>>> conda-forge
>>> > readline 8.0 hcfe32e1_0
>>> conda-forge
>>> > setuptools 46.1.3 py38h32f6830_0
>>> conda-forge
>>> > sqlite 3.30.1 h93121df_0
>>> conda-forge
>>> > tbb 2018.0.5 h2d50403_0
>>> conda-forge
>>> > tiledb 1.7.7 h84aa2a7_1
>>> conda-forge
>>> > tk 8.6.10 hbbe82c9_0
>>> conda-forge
>>> > tzcode 2019a h01d97ff_1002
>>> conda-forge
>>> > udunits2 2.2.27.6 h776b7f1_1001
>>> conda-forge
>>> > wheel 0.34.2 py_1
>>> conda-forge
>>> > xerces-c 3.2.2 h8f8adb3_1004
>>> conda-forge
>>> > xz 5.2.5 h0b31af3_0
>>> conda-forge
>>> > zlib 1.2.11 h0b31af3_1006
>>> conda-forge
>>> > zstd 1.4.4 h4b3e974_3
>>> conda-forge
>>> > (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ conda --version
>>> > conda 4.8.3
>>> > (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ which ncl
>>> > /Users/Vanessa/miniconda3/envs/ncl_stable/bin/ncl
>>> > (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ ncl -V
>>> > 6.6.2
>>> > (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ env | grep NCARG
>>> > OLD_NCARG_ROOT=/Users/Vanessa/miniconda3/envs/ncl_stable/bin/ncl
>>> > NCARG_ROOT=/Users/Vanessa/miniconda3/envs/ncl_stable
>>> >
>>> > Can you please help me with running the tests for NCL and getting it
>>> to work properly?
>>> >
>>> > Many thanks in advance for your help,
>>> > Vanessa
>>> >
>>> >
>>> > --
>>> > Vanessa Vincente
>>> > Associate Scientist
>>> > The COMET® Program
>>> > University Corporation for Atmospheric Research
>>> >
>>> > *My working hours may differ from your own. Please do not feel
>>> obligated to reply outside of standard business hours.*
>>> > _______________________________________________
>>> > ncl-install mailing list
>>> > List instructions, subscriber options, unsubscribe:
>>> > http://mailman.ucar.edu/mailman/listinfo/ncl-install
>>> >
>>> >
>>> > --
>>> > Vanessa Vincente
>>> > Associate Scientist
>>> > The COMET® Program
>>> > University Corporation for Atmospheric Research
>>> >
>>> > *My working hours may differ from your own. Please do not feel
>>> obligated to reply outside of standard business hours.*
>>> > _______________________________________________
>>> > ncl-install mailing list
>>> > List instructions, subscriber options, unsubscribe:
>>> > http://mailman.ucar.edu/mailman/listinfo/ncl-install
>>>
>>>
>>>
>>>
>>>
>>
>> --
>> Vanessa Vincente
>> Associate Scientist
>> The COMET® Program
>> University Corporation for Atmospheric Research
>>
>> *My working hours may differ from your own. Please do not feel obligated
>> to reply outside of standard business hours.*
>>
>
--
Vanessa Vincente
Associate Scientist
The COMET® Program
University Corporation for Atmospheric Research
*My working hours may differ from your own. Please do not feel obligated
to reply outside of standard business hours.*
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