[ncl-install] ncl-install Digest, Vol 150, Issue 7
Andrei Kurbatov
akurbatov at maine.edu
Mon Apr 20 08:40:12 MDT 2020
Hi Vanessa,
1) Try to remove these 3 lines
export NCARG_ROOT=/Users/Vanessa/miniconda3/envs/ncl_stable/bin/ncl
export PATH=$NCARG_ROOT/bin:$PATH
export DISPLAY=Vanessas-MacBook-Pro.local
in
.bash_profile
2) restart the computer
3) In terminal prompt type >conda activate ncl_stable
4) In terminal prompt type >ncl
Andrei
P.S.
All ncl specific settings should go to
/Users/Vanessa/miniconda3/envs/ncl_stable/etc/conda/activate.d/ncl-activate.sh
/Users/Vanessa/miniconda3/envs/ncl_stable/etc/conda/deactivate.d/ncl-deactivate.sh
see some info here
https://stackoverflow.com/questions/46826497/conda-set-ld-library-path-for-env-only
Andrei
> On Apr 20, 2020, at 10:16 AM, ncl-install-request at ucar.edu wrote:
>
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> Today's Topics:
>
> 1. Re: NCL install issue (Vanessa Vincente)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Mon, 20 Apr 2020 08:16:26 -0600
> From: Vanessa Vincente <vincente at ucar.edu>
> To: Dave Allured - NOAA Affiliate <dave.allured at noaa.gov>
> Cc: ncl-install <ncl-install at ucar.edu>
> Subject: Re: [ncl-install] NCL install issue
> Message-ID:
> <CAE742yjuRT3kzG_fqMwBcqapW05=PakqK1Mns5_B76z=VWqy7Q at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hello,
>
> I checked to see if XQuartz was installed on my laptop. I have XQuartz
> 2.7.11 installed.
>
> I tried the NCL command and still get the same errors:
>
> Copyright (C) 1995-2019 - All Rights Reserved
>
> University Corporation for Atmospheric Research
>
> NCAR Command Language Version 6.6.2
>
> The use of this software is governed by a License Agreement.
>
> See http://www.ncl.ucar.edu/ for more details.
>
> GKS ERROR NUMBER -208 ISSUED FROM SUBROUTINE GOPWK :
>
> --X driver error: DISPLAY environment variable not set
>
> GKS ERROR NUMBER 25 ISSUED FROM SUBROUTINE GESC :
>
> --SPECIFIED WORKSTATION IS NOT OPEN
>
> fatal:Workstation with PID#8 is not open
>
> fatal:Unable to open Workstation-Can't Create
>
> fatal:Unable to access object with id:-4
>
> fatal:_NhlCreate:Invalid Parent id #-4
>
> fatal:PID #-4 can't be found in NhlSetValues
>
> fatal:NhlDraw: Invalid Layer Id: -4
>
> fatal:Unable to update Workstation with PID#-4
>
> fatal:Unable to clear Workstation with PID#-4
>
> fatal:["Execute.c":8637]:Execute: Error occurred at or near line 2742 in
> file $NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl
>
>
> fatal:["Execute.c":8637]:Execute: Error occurred at or near line 10231 in
> file $NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl
>
>
> fatal:["Execute.c":8637]:Execute: Error occurred at or near line 20 in file
> /Users/Vanessa/miniconda3/envs/ncl_stable/lib/ncarg/nclex/gsun/gsun02n.ncl
>
>
>
> I tried the help page for setting the Display environment.
> Below is a copy of my .bash_profile I edited:
>
>
>
> # >>> conda initialize >>>
>
> # !! Contents within this block are managed by 'conda init' !!
>
> __conda_setup="$('/Users/Vanessa/miniconda3/bin/conda' 'shell.bash' 'hook'
> 2> /dev/null)"
>
> if [ $? -eq 0 ]; then
>
> eval "$__conda_setup"
>
> else
>
> if [ -f "/Users/Vanessa/miniconda3/etc/profile.d/conda.sh" ]; then
>
> . "/Users/Vanessa/miniconda3/etc/profile.d/conda.sh"
>
> else
>
> export PATH="/Users/Vanessa/miniconda3/bin:$PATH"
>
> fi
>
> fi
>
> unset __conda_setup
>
> # <<< conda initialize <<<
>
>
> # Settings for NCL
>
> export NCARG_ROOT=/Users/Vanessa/miniconda3/envs/ncl_stable/bin/ncl
>
> export PATH=$NCARG_ROOT/bin:$PATH
>
> export DISPLAY=Vanessas-MacBook-Pro.local
>
> ~
>
> Is there another step I can try to resolve the issue?
>
> Thanks!
> Vanessa
>
>
> On Sun, Apr 19, 2020 at 10:45 PM Dave Allured - NOAA Affiliate <
> dave.allured at noaa.gov> wrote:
>
>> I think that you may not have installed XQuartz properly. Please follow
>> the instructions under "Install XQuartz" on this page:
>>
>> http://www.ncl.ucar.edu/Download/macosx.shtml
>>
>> Make sure that after downloading the Xquartz.dmg file, you double click on
>> this file and complete the installation procedure. You may also need to
>> restart your Mac after the install procedure. Then retry the ncl test
>> command.
>>
>>
>> On Sun, Apr 19, 2020 at 9:02 PM Vanessa Vincente via ncl-install <
>> ncl-install at ucar.edu> wrote:
>>
>>> Hello,
>>>
>>> I am trying to install NCL on my macOS High Sierra laptop and I am having
>>> issues with testing NCL.
>>>
>>> I have installed miniconda:
>>> conda -V returns "conda 4.8.3"
>>>
>>> I have created the conda environment and called it "ncl_stable"
>>>
>>> I am testing NCL, step 1:
>>> ncl -V returns "6.6.2"
>>>
>>> The issue I have is in step 2:
>>> ncl $NCARG_ROOT/lib/ncarg/nclex/gsun/gsun02n.ncl
>>>
>>> this returns...
>>>
>>> Copyright (C) 1995-2019 - All Rights Reserved
>>>
>>> University Corporation for Atmospheric Research
>>>
>>> NCAR Command Language Version 6.6.2
>>>
>>> The use of this software is governed by a License Agreement.
>>>
>>> See http://www.ncl.ucar.edu/ for more details.
>>>
>>> GKS ERROR NUMBER -208 ISSUED FROM SUBROUTINE GOPWK :
>>>
>>> --X driver error: DISPLAY environment variable not set
>>>
>>> GKS ERROR NUMBER 25 ISSUED FROM SUBROUTINE GESC :
>>>
>>> --SPECIFIED WORKSTATION IS NOT OPEN
>>>
>>> fatal:Workstation with PID#8 is not open
>>>
>>> fatal:Unable to open Workstation-Can't Create
>>>
>>> fatal:Unable to access object with id:-4
>>>
>>> fatal:_NhlCreate:Invalid Parent id #-4
>>>
>>> fatal:PID #-4 can't be found in NhlSetValues
>>>
>>> fatal:NhlDraw: Invalid Layer Id: -4
>>>
>>> fatal:Unable to update Workstation with PID#-4
>>>
>>> fatal:Unable to clear Workstation with PID#-4
>>>
>>> fatal:["Execute.c":8637]:Execute: Error occurred at or near line 2742 in
>>> file $NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl
>>>
>>>
>>> fatal:["Execute.c":8637]:Execute: Error occurred at or near line 10231 in
>>> file $NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl
>>>
>>>
>>> fatal:["Execute.c":8637]:Execute: Error occurred at or near line 20 in
>>> file
>>> /Users/Vanessa/miniconda3/envs/ncl_stable/lib/ncarg/nclex/gsun/gsun02n.ncl
>>>
>>>
>>> Below is the output requested from help page:
>>>
>>> (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ conda list -n ncl_stable
>>>
>>> # packages in environment at /Users/Vanessa/miniconda3/envs/ncl_stable:
>>>
>>> #
>>>
>>> # Name Version Build Channel
>>>
>>> boost-cpp 1.72.0 hdf9ef73_0 conda-forge
>>>
>>> bzip2 1.0.8 h0b31af3_2 conda-forge
>>>
>>> ca-certificates 2020.4.5.1 hecc5488_0 conda-forge
>>>
>>> cairo 1.16.0 hec6a9b0_1003 conda-forge
>>>
>>> certifi 2020.4.5.1 py38h32f6830_0 conda-forge
>>>
>>> cfitsio 3.470 h84d2f63_2 conda-forge
>>>
>>> curl 7.69.1 h2d98d24_0 conda-forge
>>>
>>> esmf 8.0.0 nompi_hee103b1_6 conda-forge
>>>
>>> expat 2.2.9 h4a8c4bd_2 conda-forge
>>>
>>> fontconfig 2.13.1 h6b1039f_1001 conda-forge
>>>
>>> freetype 2.10.1 h8da9a1a_0 conda-forge
>>>
>>> freexl 1.0.5 h1de35cc_1002 conda-forge
>>>
>>> geos 3.8.1 h4a8c4bd_0 conda-forge
>>>
>>> geotiff 1.5.1 hd8796ba_10 conda-forge
>>>
>>> gettext 0.19.8.1 h46ab8bc_1002 conda-forge
>>>
>>> giflib 5.2.1 h0b31af3_2 conda-forge
>>>
>>> glib 2.64.2 h577aef8_0 conda-forge
>>>
>>> gsl 2.6 ha2d443c_0 conda-forge
>>>
>>> hdf4 4.2.13 h84186c3_1003 conda-forge
>>>
>>> hdf5 1.10.5 nompi_h3e39495_1104
>>> conda-forge
>>>
>>> hdfeos2 2.20 h207910d_1000 conda-forge
>>>
>>> hdfeos5 5.1.16 h60f75e3_5 conda-forge
>>>
>>> icu 64.2 h6de7cb9_1 conda-forge
>>>
>>> jasper 1.900.1 h636a363_1006 conda-forge
>>>
>>> jpeg 9c h1de35cc_1001 conda-forge
>>>
>>> json-c 0.13.1 h1de35cc_1001 conda-forge
>>>
>>> kealib 1.4.13 h2324030_0 conda-forge
>>>
>>> krb5 1.17.1 h1752a42_0 conda-forge
>>>
>>> libblas 3.8.0 14_openblas conda-forge
>>>
>>> libcblas 3.8.0 14_openblas conda-forge
>>>
>>> libcurl 7.69.1 hc0b9707_0 conda-forge
>>>
>>> libcxx 10.0.0 0 conda-forge
>>>
>>> libdap4 3.20.4 habf5908_0 conda-forge
>>>
>>> libedit 3.1.20170329 hcfe32e1_1001 conda-forge
>>>
>>> libffi 3.2.1 h4a8c4bd_1007 conda-forge
>>>
>>> libgdal 3.0.4 ha92c1e4_6 conda-forge
>>>
>>> libgfortran 4.0.0 2 conda-forge
>>>
>>> libiconv 1.15 h0b31af3_1006 conda-forge
>>>
>>> libkml 1.3.0 h169b8f9_1011 conda-forge
>>>
>>> libnetcdf 4.7.4 nompi_he461dc0_101
>>> conda-forge
>>>
>>> libopenblas 0.3.7 h3d69b6c_4 conda-forge
>>>
>>> libpng 1.6.37 hbbe82c9_1 conda-forge
>>>
>>> libpq 12.2 h489d428_1 conda-forge
>>>
>>> libspatialite 4.3.0a h658e6c1_1038 conda-forge
>>>
>>> libssh2 1.8.2 hcdc9a53_2 conda-forge
>>>
>>> libtiff 4.1.0 h2ae36a8_6 conda-forge
>>>
>>> libwebp-base 1.1.0 h0b31af3_3 conda-forge
>>>
>>> libxml2 2.9.10 h53d96d6_0 conda-forge
>>>
>>> llvm-openmp 8.0.1 h770b8ee_0 conda-forge
>>>
>>> lz4-c 1.9.2 h4a8c4bd_0 conda-forge
>>>
>>> ncl 6.6.2 h0197cca_20 conda-forge
>>>
>>> ncurses 6.1 h0a44026_1002 conda-forge
>>>
>>> netcdf-fortran 4.5.2 nompi_h0361502_104
>>> conda-forge
>>>
>>> openjpeg 2.3.1 h254dc36_3 conda-forge
>>>
>>> openmp 8.0.1 0 conda-forge
>>>
>>> openssl 1.1.1f h0b31af3_0 conda-forge
>>>
>>> pcre 8.44 h4a8c4bd_0 conda-forge
>>>
>>> pip 20.0.2 py_2 conda-forge
>>>
>>> pixman 0.38.0 h01d97ff_1003 conda-forge
>>>
>>> poppler 0.67.0 h16886b5_8 conda-forge
>>>
>>> poppler-data 0.4.9 1 conda-forge
>>>
>>> postgresql 12.2 h62ab893_1 conda-forge
>>>
>>> proj 7.0.0 hbce2d5c_3 conda-forge
>>>
>>> python 3.8.2 hd5f0129_6_cpython
>>> conda-forge
>>>
>>> python_abi 3.8 1_cp38 conda-forge
>>>
>>> readline 8.0 hcfe32e1_0 conda-forge
>>>
>>> setuptools 46.1.3 py38h32f6830_0 conda-forge
>>>
>>> sqlite 3.30.1 h93121df_0 conda-forge
>>>
>>> tbb 2018.0.5 h2d50403_0 conda-forge
>>>
>>> tiledb 1.7.7 h84aa2a7_1 conda-forge
>>>
>>> tk 8.6.10 hbbe82c9_0 conda-forge
>>>
>>> tzcode 2019a h01d97ff_1002 conda-forge
>>>
>>> udunits2 2.2.27.6 h776b7f1_1001 conda-forge
>>>
>>> wheel 0.34.2 py_1 conda-forge
>>>
>>> xerces-c 3.2.2 h8f8adb3_1004 conda-forge
>>>
>>> xz 5.2.5 h0b31af3_0 conda-forge
>>>
>>> zlib 1.2.11 h0b31af3_1006 conda-forge
>>>
>>> zstd 1.4.4 h4b3e974_3 conda-forge
>>>
>>> (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ conda --version
>>>
>>> conda 4.8.3
>>>
>>> (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ which ncl
>>>
>>> /Users/Vanessa/miniconda3/envs/ncl_stable/bin/ncl
>>>
>>> (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ ncl -V
>>>
>>> 6.6.2
>>>
>>> (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ env | grep NCARG
>>>
>>> OLD_NCARG_ROOT=/Users/Vanessa/miniconda3/envs/ncl_stable/bin/ncl
>>>
>>> NCARG_ROOT=/Users/Vanessa/miniconda3/envs/ncl_stable
>>>
>>> Can you please help me with running the tests for NCL and getting it to
>>> work properly?
>>>
>>> Many thanks in advance for your help,
>>> Vanessa
>>>
>>>
>>> --
>>> Vanessa Vincente
>>> Associate Scientist
>>> The COMET? Program
>>> University Corporation for Atmospheric Research
>>>
>>> *My working hours may differ from your own. Please do not feel obligated
>>> to reply outside of standard business hours.*
>>> _______________________________________________
>>> ncl-install mailing list
>>> List instructions, subscriber options, unsubscribe:
>>> http://mailman.ucar.edu/mailman/listinfo/ncl-install
>>
>>
>
> --
> Vanessa Vincente
> Associate Scientist
> The COMET? Program
> University Corporation for Atmospheric Research
>
> *My working hours may differ from your own. Please do not feel obligated
> to reply outside of standard business hours.*
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