[ncl-install] ncl-install Digest, Vol 150, Issue 7
Vanessa Vincente
vincente at ucar.edu
Mon Apr 20 11:29:29 MDT 2020
Hello,
I have removed the 3 export commands I had in my .bash_profile.
I restarted computer, typed in terminal 'conda activate ncl_stable' and
then typed 'ncl'
NCL opened without a problem:
Copyright (C) 1995-2019 - All Rights Reserved
University Corporation for Atmospheric Research
NCAR Command Language Version 6.6.2
The use of this software is governed by a License Agreement.
See http://www.ncl.ucar.edu/ for more details.
ncl 0>
Also, I ran the 2nd and 3rd NCL test :
ncl $NCARG_ROOT/lib/ncarg/nclex/gsun/gsun02n.ncl
ncl $NCARG_ROOT/lib/ncarg/nclex/nug/NUG_multi_timeseries.ncl
and they both worked! Thanks so much for your help!
Vanessa
On Mon, Apr 20, 2020 at 8:40 AM Andrei Kurbatov via ncl-install <
ncl-install at ucar.edu> wrote:
> Hi Vanessa,
>
> 1) Try to remove these 3 lines
> export NCARG_ROOT=/Users/Vanessa/miniconda3/envs/ncl_stable/bin/ncl
>
> export PATH=$NCARG_ROOT/bin:$PATH
>
> export DISPLAY=Vanessas-MacBook-Pro.local
> in
> .bash_profile
> 2) restart the computer
> 3) In terminal prompt type >conda activate ncl_stable
> 4) In terminal prompt type >ncl
>
> Andrei
>
> P.S.
> All ncl specific settings should go to
>
> /Users/Vanessa/miniconda3/envs/ncl_stable/etc/conda/activate.d/ncl-activate.sh
>
> /Users/Vanessa/miniconda3/envs/ncl_stable/etc/conda/deactivate.d/ncl-deactivate.sh
>
> see some info here
>
> https://stackoverflow.com/questions/46826497/conda-set-ld-library-path-for-env-only
>
>
> Andrei
>
> > On Apr 20, 2020, at 10:16 AM, ncl-install-request at ucar.edu wrote:
> >
> > Send ncl-install mailing list submissions to
> > ncl-install at ucar.edu
> >
> > To subscribe or unsubscribe via the World Wide Web, visit
> > http://mailman.ucar.edu/mailman/listinfo/ncl-install
> > or, via email, send a message with subject or body 'help' to
> > ncl-install-request at ucar.edu
> >
> > You can reach the person managing the list at
> > ncl-install-owner at ucar.edu
> >
> > When replying, please edit your Subject line so it is more specific
> > than "Re: Contents of ncl-install digest..."
> >
> >
> > Today's Topics:
> >
> > 1. Re: NCL install issue (Vanessa Vincente)
> >
> >
> > ----------------------------------------------------------------------
> >
> > Message: 1
> > Date: Mon, 20 Apr 2020 08:16:26 -0600
> > From: Vanessa Vincente <vincente at ucar.edu>
> > To: Dave Allured - NOAA Affiliate <dave.allured at noaa.gov>
> > Cc: ncl-install <ncl-install at ucar.edu>
> > Subject: Re: [ncl-install] NCL install issue
> > Message-ID:
> > <CAE742yjuRT3kzG_fqMwBcqapW05=PakqK1Mns5_B76z=
> VWqy7Q at mail.gmail.com>
> > Content-Type: text/plain; charset="utf-8"
> >
> > Hello,
> >
> > I checked to see if XQuartz was installed on my laptop. I have XQuartz
> > 2.7.11 installed.
> >
> > I tried the NCL command and still get the same errors:
> >
> > Copyright (C) 1995-2019 - All Rights Reserved
> >
> > University Corporation for Atmospheric Research
> >
> > NCAR Command Language Version 6.6.2
> >
> > The use of this software is governed by a License Agreement.
> >
> > See http://www.ncl.ucar.edu/ for more details.
> >
> > GKS ERROR NUMBER -208 ISSUED FROM SUBROUTINE GOPWK :
> >
> > --X driver error: DISPLAY environment variable not set
> >
> > GKS ERROR NUMBER 25 ISSUED FROM SUBROUTINE GESC :
> >
> > --SPECIFIED WORKSTATION IS NOT OPEN
> >
> > fatal:Workstation with PID#8 is not open
> >
> > fatal:Unable to open Workstation-Can't Create
> >
> > fatal:Unable to access object with id:-4
> >
> > fatal:_NhlCreate:Invalid Parent id #-4
> >
> > fatal:PID #-4 can't be found in NhlSetValues
> >
> > fatal:NhlDraw: Invalid Layer Id: -4
> >
> > fatal:Unable to update Workstation with PID#-4
> >
> > fatal:Unable to clear Workstation with PID#-4
> >
> > fatal:["Execute.c":8637]:Execute: Error occurred at or near line 2742 in
> > file $NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl
> >
> >
> > fatal:["Execute.c":8637]:Execute: Error occurred at or near line 10231 in
> > file $NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl
> >
> >
> > fatal:["Execute.c":8637]:Execute: Error occurred at or near line 20 in
> file
> >
> /Users/Vanessa/miniconda3/envs/ncl_stable/lib/ncarg/nclex/gsun/gsun02n.ncl
> >
> >
> >
> > I tried the help page for setting the Display environment.
> > Below is a copy of my .bash_profile I edited:
> >
> >
> >
> > # >>> conda initialize >>>
> >
> > # !! Contents within this block are managed by 'conda init' !!
> >
> > __conda_setup="$('/Users/Vanessa/miniconda3/bin/conda' 'shell.bash'
> 'hook'
> > 2> /dev/null)"
> >
> > if [ $? -eq 0 ]; then
> >
> > eval "$__conda_setup"
> >
> > else
> >
> > if [ -f "/Users/Vanessa/miniconda3/etc/profile.d/conda.sh" ]; then
> >
> > . "/Users/Vanessa/miniconda3/etc/profile.d/conda.sh"
> >
> > else
> >
> > export PATH="/Users/Vanessa/miniconda3/bin:$PATH"
> >
> > fi
> >
> > fi
> >
> > unset __conda_setup
> >
> > # <<< conda initialize <<<
> >
> >
> > # Settings for NCL
> >
> > export NCARG_ROOT=/Users/Vanessa/miniconda3/envs/ncl_stable/bin/ncl
> >
> > export PATH=$NCARG_ROOT/bin:$PATH
> >
> > export DISPLAY=Vanessas-MacBook-Pro.local
> >
> > ~
> >
> > Is there another step I can try to resolve the issue?
> >
> > Thanks!
> > Vanessa
> >
> >
> > On Sun, Apr 19, 2020 at 10:45 PM Dave Allured - NOAA Affiliate <
> > dave.allured at noaa.gov> wrote:
> >
> >> I think that you may not have installed XQuartz properly. Please follow
> >> the instructions under "Install XQuartz" on this page:
> >>
> >> http://www.ncl.ucar.edu/Download/macosx.shtml
> >>
> >> Make sure that after downloading the Xquartz.dmg file, you double click
> on
> >> this file and complete the installation procedure. You may also need to
> >> restart your Mac after the install procedure. Then retry the ncl test
> >> command.
> >>
> >>
> >> On Sun, Apr 19, 2020 at 9:02 PM Vanessa Vincente via ncl-install <
> >> ncl-install at ucar.edu> wrote:
> >>
> >>> Hello,
> >>>
> >>> I am trying to install NCL on my macOS High Sierra laptop and I am
> having
> >>> issues with testing NCL.
> >>>
> >>> I have installed miniconda:
> >>> conda -V returns "conda 4.8.3"
> >>>
> >>> I have created the conda environment and called it "ncl_stable"
> >>>
> >>> I am testing NCL, step 1:
> >>> ncl -V returns "6.6.2"
> >>>
> >>> The issue I have is in step 2:
> >>> ncl $NCARG_ROOT/lib/ncarg/nclex/gsun/gsun02n.ncl
> >>>
> >>> this returns...
> >>>
> >>> Copyright (C) 1995-2019 - All Rights Reserved
> >>>
> >>> University Corporation for Atmospheric Research
> >>>
> >>> NCAR Command Language Version 6.6.2
> >>>
> >>> The use of this software is governed by a License Agreement.
> >>>
> >>> See http://www.ncl.ucar.edu/ for more details.
> >>>
> >>> GKS ERROR NUMBER -208 ISSUED FROM SUBROUTINE GOPWK :
> >>>
> >>> --X driver error: DISPLAY environment variable not set
> >>>
> >>> GKS ERROR NUMBER 25 ISSUED FROM SUBROUTINE GESC :
> >>>
> >>> --SPECIFIED WORKSTATION IS NOT OPEN
> >>>
> >>> fatal:Workstation with PID#8 is not open
> >>>
> >>> fatal:Unable to open Workstation-Can't Create
> >>>
> >>> fatal:Unable to access object with id:-4
> >>>
> >>> fatal:_NhlCreate:Invalid Parent id #-4
> >>>
> >>> fatal:PID #-4 can't be found in NhlSetValues
> >>>
> >>> fatal:NhlDraw: Invalid Layer Id: -4
> >>>
> >>> fatal:Unable to update Workstation with PID#-4
> >>>
> >>> fatal:Unable to clear Workstation with PID#-4
> >>>
> >>> fatal:["Execute.c":8637]:Execute: Error occurred at or near line 2742
> in
> >>> file $NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl
> >>>
> >>>
> >>> fatal:["Execute.c":8637]:Execute: Error occurred at or near line 10231
> in
> >>> file $NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl
> >>>
> >>>
> >>> fatal:["Execute.c":8637]:Execute: Error occurred at or near line 20 in
> >>> file
> >>>
> /Users/Vanessa/miniconda3/envs/ncl_stable/lib/ncarg/nclex/gsun/gsun02n.ncl
> >>>
> >>>
> >>> Below is the output requested from help page:
> >>>
> >>> (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ conda list -n ncl_stable
> >>>
> >>> # packages in environment at /Users/Vanessa/miniconda3/envs/ncl_stable:
> >>>
> >>> #
> >>>
> >>> # Name Version Build Channel
> >>>
> >>> boost-cpp 1.72.0 hdf9ef73_0
> conda-forge
> >>>
> >>> bzip2 1.0.8 h0b31af3_2
> conda-forge
> >>>
> >>> ca-certificates 2020.4.5.1 hecc5488_0
> conda-forge
> >>>
> >>> cairo 1.16.0 hec6a9b0_1003
> conda-forge
> >>>
> >>> certifi 2020.4.5.1 py38h32f6830_0
> conda-forge
> >>>
> >>> cfitsio 3.470 h84d2f63_2
> conda-forge
> >>>
> >>> curl 7.69.1 h2d98d24_0
> conda-forge
> >>>
> >>> esmf 8.0.0 nompi_hee103b1_6
> conda-forge
> >>>
> >>> expat 2.2.9 h4a8c4bd_2
> conda-forge
> >>>
> >>> fontconfig 2.13.1 h6b1039f_1001
> conda-forge
> >>>
> >>> freetype 2.10.1 h8da9a1a_0
> conda-forge
> >>>
> >>> freexl 1.0.5 h1de35cc_1002
> conda-forge
> >>>
> >>> geos 3.8.1 h4a8c4bd_0
> conda-forge
> >>>
> >>> geotiff 1.5.1 hd8796ba_10
> conda-forge
> >>>
> >>> gettext 0.19.8.1 h46ab8bc_1002
> conda-forge
> >>>
> >>> giflib 5.2.1 h0b31af3_2
> conda-forge
> >>>
> >>> glib 2.64.2 h577aef8_0
> conda-forge
> >>>
> >>> gsl 2.6 ha2d443c_0
> conda-forge
> >>>
> >>> hdf4 4.2.13 h84186c3_1003
> conda-forge
> >>>
> >>> hdf5 1.10.5 nompi_h3e39495_1104
> >>> conda-forge
> >>>
> >>> hdfeos2 2.20 h207910d_1000
> conda-forge
> >>>
> >>> hdfeos5 5.1.16 h60f75e3_5
> conda-forge
> >>>
> >>> icu 64.2 h6de7cb9_1
> conda-forge
> >>>
> >>> jasper 1.900.1 h636a363_1006
> conda-forge
> >>>
> >>> jpeg 9c h1de35cc_1001
> conda-forge
> >>>
> >>> json-c 0.13.1 h1de35cc_1001
> conda-forge
> >>>
> >>> kealib 1.4.13 h2324030_0
> conda-forge
> >>>
> >>> krb5 1.17.1 h1752a42_0
> conda-forge
> >>>
> >>> libblas 3.8.0 14_openblas
> conda-forge
> >>>
> >>> libcblas 3.8.0 14_openblas
> conda-forge
> >>>
> >>> libcurl 7.69.1 hc0b9707_0
> conda-forge
> >>>
> >>> libcxx 10.0.0 0
> conda-forge
> >>>
> >>> libdap4 3.20.4 habf5908_0
> conda-forge
> >>>
> >>> libedit 3.1.20170329 hcfe32e1_1001
> conda-forge
> >>>
> >>> libffi 3.2.1 h4a8c4bd_1007
> conda-forge
> >>>
> >>> libgdal 3.0.4 ha92c1e4_6
> conda-forge
> >>>
> >>> libgfortran 4.0.0 2
> conda-forge
> >>>
> >>> libiconv 1.15 h0b31af3_1006
> conda-forge
> >>>
> >>> libkml 1.3.0 h169b8f9_1011
> conda-forge
> >>>
> >>> libnetcdf 4.7.4 nompi_he461dc0_101
> >>> conda-forge
> >>>
> >>> libopenblas 0.3.7 h3d69b6c_4
> conda-forge
> >>>
> >>> libpng 1.6.37 hbbe82c9_1
> conda-forge
> >>>
> >>> libpq 12.2 h489d428_1
> conda-forge
> >>>
> >>> libspatialite 4.3.0a h658e6c1_1038
> conda-forge
> >>>
> >>> libssh2 1.8.2 hcdc9a53_2
> conda-forge
> >>>
> >>> libtiff 4.1.0 h2ae36a8_6
> conda-forge
> >>>
> >>> libwebp-base 1.1.0 h0b31af3_3
> conda-forge
> >>>
> >>> libxml2 2.9.10 h53d96d6_0
> conda-forge
> >>>
> >>> llvm-openmp 8.0.1 h770b8ee_0
> conda-forge
> >>>
> >>> lz4-c 1.9.2 h4a8c4bd_0
> conda-forge
> >>>
> >>> ncl 6.6.2 h0197cca_20
> conda-forge
> >>>
> >>> ncurses 6.1 h0a44026_1002
> conda-forge
> >>>
> >>> netcdf-fortran 4.5.2 nompi_h0361502_104
> >>> conda-forge
> >>>
> >>> openjpeg 2.3.1 h254dc36_3
> conda-forge
> >>>
> >>> openmp 8.0.1 0
> conda-forge
> >>>
> >>> openssl 1.1.1f h0b31af3_0
> conda-forge
> >>>
> >>> pcre 8.44 h4a8c4bd_0
> conda-forge
> >>>
> >>> pip 20.0.2 py_2
> conda-forge
> >>>
> >>> pixman 0.38.0 h01d97ff_1003
> conda-forge
> >>>
> >>> poppler 0.67.0 h16886b5_8
> conda-forge
> >>>
> >>> poppler-data 0.4.9 1
> conda-forge
> >>>
> >>> postgresql 12.2 h62ab893_1
> conda-forge
> >>>
> >>> proj 7.0.0 hbce2d5c_3
> conda-forge
> >>>
> >>> python 3.8.2 hd5f0129_6_cpython
> >>> conda-forge
> >>>
> >>> python_abi 3.8 1_cp38
> conda-forge
> >>>
> >>> readline 8.0 hcfe32e1_0
> conda-forge
> >>>
> >>> setuptools 46.1.3 py38h32f6830_0
> conda-forge
> >>>
> >>> sqlite 3.30.1 h93121df_0
> conda-forge
> >>>
> >>> tbb 2018.0.5 h2d50403_0
> conda-forge
> >>>
> >>> tiledb 1.7.7 h84aa2a7_1
> conda-forge
> >>>
> >>> tk 8.6.10 hbbe82c9_0
> conda-forge
> >>>
> >>> tzcode 2019a h01d97ff_1002
> conda-forge
> >>>
> >>> udunits2 2.2.27.6 h776b7f1_1001
> conda-forge
> >>>
> >>> wheel 0.34.2 py_1
> conda-forge
> >>>
> >>> xerces-c 3.2.2 h8f8adb3_1004
> conda-forge
> >>>
> >>> xz 5.2.5 h0b31af3_0
> conda-forge
> >>>
> >>> zlib 1.2.11 h0b31af3_1006
> conda-forge
> >>>
> >>> zstd 1.4.4 h4b3e974_3
> conda-forge
> >>>
> >>> (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ conda --version
> >>>
> >>> conda 4.8.3
> >>>
> >>> (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ which ncl
> >>>
> >>> /Users/Vanessa/miniconda3/envs/ncl_stable/bin/ncl
> >>>
> >>> (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ ncl -V
> >>>
> >>> 6.6.2
> >>>
> >>> (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ env | grep NCARG
> >>>
> >>> OLD_NCARG_ROOT=/Users/Vanessa/miniconda3/envs/ncl_stable/bin/ncl
> >>>
> >>> NCARG_ROOT=/Users/Vanessa/miniconda3/envs/ncl_stable
> >>>
> >>> Can you please help me with running the tests for NCL and getting it to
> >>> work properly?
> >>>
> >>> Many thanks in advance for your help,
> >>> Vanessa
> >>>
> >>>
> >>> --
> >>> Vanessa Vincente
> >>> Associate Scientist
> >>> The COMET? Program
> >>> University Corporation for Atmospheric Research
> >>>
> >>> *My working hours may differ from your own. Please do not feel
> obligated
> >>> to reply outside of standard business hours.*
> >>> _______________________________________________
> >>> ncl-install mailing list
> >>> List instructions, subscriber options, unsubscribe:
> >>> http://mailman.ucar.edu/mailman/listinfo/ncl-install
> >>
> >>
> >
> > --
> > Vanessa Vincente
> > Associate Scientist
> > The COMET? Program
> > University Corporation for Atmospheric Research
> >
> > *My working hours may differ from your own. Please do not feel obligated
> > to reply outside of standard business hours.*
> > -------------- next part --------------
> > An HTML attachment was scrubbed...
> > URL: <
> http://mailman.ucar.edu/pipermail/ncl-install/attachments/20200420/4f78279b/attachment.html
> >
> >
> > ------------------------------
> >
> > Subject: Digest Footer
> >
> > _______________________________________________
> > ncl-install mailing list
> > List instructions, subscriber options, unsubscribe:
> > http://mailman.ucar.edu/mailman/listinfo/ncl-install
> >
> > ------------------------------
> >
> > End of ncl-install Digest, Vol 150, Issue 7
> > *******************************************
>
> _______________________________________________
> ncl-install mailing list
> List instructions, subscriber options, unsubscribe:
> http://mailman.ucar.edu/mailman/listinfo/ncl-install
>
--
Vanessa Vincente
Associate Scientist
The COMET® Program
University Corporation for Atmospheric Research
*My working hours may differ from your own. Please do not feel obligated
to reply outside of standard business hours.*
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.ucar.edu/pipermail/ncl-install/attachments/20200420/fb0945f9/attachment-0001.html>
More information about the ncl-install
mailing list