[ncl-install] Fwd: Problem loading libraries NCL.6.5.0 MacOS installation via miniconda

[Lyndz]

Hi Mary,

Thank you for this.

You are right. The link in the bash_profile-miniconda was not properly
linked.

I got it working now.

Sincerely,

Lyndz,


On Wed, Oct 17, 2018 at 2:50 AM Mary Haley <haley at ucar.edu> wrote:

> Lyndz,
>
> I think you have one or more leftover NCARG_XXXX environment variables
> being set from a previous install of NCL.
>
> You should only have NCARG_ROOT set and it should be set to
>
> /Users/lyndz/miniconda2/envs/toolbox
>
> If you type the following from a terminal window:
>
> env | grep NCARG
>
> it will show you what other NCARG_XXXX environment variables you have
> set.  I'm guessing you might have NCARG_NCARG and NCARG_LIB set. If you do
> see these, then edit whatever .xxxx file in your home directory is setting
> them, and comment or remove those lines. You can check for which file is
> setting them by typing:
>
>
> grep NCARG ~/.*
>
> Good luck,
>
> --Mary
>
>
>
>
> On Mon, Oct 15, 2018 at 10:37 PM, Lyndz via ncl-install <
> ncl-install at ucar.edu> wrote:
>
>> Dear NCL-support team,
>>
>> I encountered a warning message after installing NCL via conda. I'll
>> appreciate any help you can provide regarding this matter.
>>
>> Here's the warning message:
>>
>>  Copyright (C) 1995-2018 - All Rights Reserved
>>
>>  University Corporation for Atmospheric Research
>>
>>  NCAR Command Language Version 6.5.0
>>
>>  The use of this software is governed by a License   Agreement.
>>
>>  See http://www.ncl.ucar.edu/ for more details.
>>
>>  warning:Unable to load System Resource File
>> /usr/local/ncl-6.5.0/lib/ncarg/sysresfile
>>
>>  warning:WorkstationClassInitialize:Unable to access rgb   color database
>> - named colors unsupported:[errno=2]
>>
>>  warning:["Palette.c":1850]:NhlLoadColormapFiles: Invalid   colormap
>> directory: /usr/local/ncl-6.5.0/lib/ncarg/colormaps
>>
>>
>>
>> *Details:*
>>
>>
>>  * which ncl* : /Users/lyndz/miniconda2/envs/toolbox/bin/ncl
>> *  ncl -V* : 6.5.0
>>
>>  * otool -L `which ncl`* :
>>
>> /Users/lyndz/miniconda2/envs/toolbox/bin/ncl:
>>
>> 	/usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 307.5.0)
>>
>> 	@rpath/libnetcdf.13.dylib (compatibility version 13.0.0, current version 13.0.0)
>>
>> 	@rpath/libcurl.4.dylib (compatibility version 10.0.0, current version 10.0.0)
>>
>> 	@rpath/libhdf5_hl.100.dylib (compatibility version 102.0.0, current version 102.0.0)
>>
>> 	@rpath/libhdf5.101.dylib (compatibility version 103.0.0, current version 103.0.0)
>>
>> 	@rpath/libmfhdf.0.dylib (compatibility version 1.0.0, current version 1.0.0)
>>
>> 	@rpath/libdf.0.dylib (compatibility version 1.0.0, current version 1.0.0)
>>
>> 	@rpath/libjpeg.9.dylib (compatibility version 13.0.0, current version 13.0.0)
>>
>> 	@rpath/libz.1.dylib (compatibility version 1.0.0, current version 1.2.11)
>>
>> 	@rpath/libgdal.20.dylib (compatibility version 24.0.0, current version 24.3.0)
>>
>> 	@rpath/libproj.12.dylib (compatibility version 13.0.0, current version 13.0.0)
>>
>> 	@rpath/libudunits2.0.dylib (compatibility version 2.0.0, current version 2.0.0)
>>
>> 	@rpath/libexpat.1.dylib (compatibility version 8.0.0, current version 8.7.0)
>>
>> 	@rpath/libjasper.1.dylib (compatibility version 2.0.0, current version 2.0.0)
>>
>> 	@rpath/libpng16.16.dylib (compatibility version 51.0.0, current version 51.0.0)
>>
>> 	/opt/X11/lib/libcairo.2.dylib (compatibility version 11403.0.0, current version 11403.6.0)
>>
>> 	/opt/X11/lib/libfontconfig.1.dylib (compatibility version 11.0.0, current version 11.2.0)
>>
>> 	/opt/X11/lib/libpixman-1.0.dylib (compatibility version 35.0.0, current version 35.0.0)
>>
>> 	/opt/X11/lib/libfreetype.6.dylib (compatibility version 19.0.0, current version 19.6.0)
>>
>> 	/opt/X11/lib/libXrender.1.dylib (compatibility version 5.0.0, current version 5.0.0)
>>
>> 	@rpath/libiconv.2.dylib (compatibility version 9.0.0, current version 9.0.0)
>>
>> 	@rpath/libbz2.dylib (compatibility version 0.0.0, current version 0.0.0)
>>
>> 	@rpath/libgsl.19.dylib (compatibility version 22.0.0, current version 22.0.0)
>>
>> 	@rpath/libopenblas.dylib (compatibility version 0.0.0, current version 0.0.0)
>>
>> 	/opt/X11/lib/libXpm.4.dylib (compatibility version 16.0.0, current version 16.0.0)
>>
>> 	/opt/X11/lib/libX11.6.dylib (compatibility version 10.0.0, current version 10.0.0)
>>
>> 	/opt/X11/lib/libXext.6.dylib (compatibility version 11.0.0, current version 11.0.0)
>>
>> 	@rpath/libgfortran.3.dylib (compatibility version 4.0.0, current version 4.0.0)
>>
>> 	@rpath/libquadmath.0.dylib (compatibility version 1.0.0, current version 1.0.0)
>>
>> 	@rpath/libstdc++.6.dylib (compatibility version 7.0.0, current version 7.19.0)
>>
>> 	@rpath/libgomp.1.dylib (compatibility version 2.0.0, current version 2.0.0)
>>
>> 	/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1238.60.2)
>>
>> 	@rpath/libgcc_s.1.dylib (compatibility version 1.0.0, current version 1.0.0)
>>
>>
>>  * env | grep NCARG* : NCARG_ROOT=/usr/local/ncl-6.5.0
>>
>> *  which gcc* : /usr/local/bin/gcc
>>
>>   *which gfortran* : /usr/local/bin/gfortran
>>
>> *  gfortran --version* : GNU Fortran (Homebrew GCC 8.1.0) 8.1.0
>>
>> *  gcc --version* : gcc (GCC) 6.3.0
>>
>>
>> *Lyndz*
>>
>> _______________________________________________
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>>
>>
>
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