[ncl-install] getting dyld LIbrary not loaded error even after installing latest gcc5 and exporting DYLD_FALLBACK_LIBRARY_PATH
Jatin Kala
jatin.kala.jk at gmail.com
Mon Jan 25 19:05:10 MST 2016
Well, this is interesting, on a different mac, on which I have been
running ncl for more than 6 months now, grepping for LD under env, still
returns nothing.
Running:
$ ng4ex gsun01n -clean
gives me the same error:
134:~ Jatin$ ng4ex gsun01n -clean
dyld: Library not loaded: /usr/local/lib/libgomp.1.dylib
Referenced from: /Users/Jatin/ncl-6.2.1/bin/ncargpath
Reason: image not found
Trace/BPT trap
This is a mac where i installed ncl without any issues around June 2015,
i updated to OS X El Capitan around September/October 2015 i think, but
did not re-check my ncl installation....This seems to be related to
updating to OS X El Capitan?
Can anyone else reproduce this issue?
Cheers,
Jatin
On 26/01/2016 9:51 AM, Jatin Kala wrote:
> Thanks Mary, see below, grepping for LD returns nothing.
>
>
> 134:~ jatinkala$ env | grep NCARG
> NCARG_ROOT=/usr/local/ncl-6.3.0
> 134:~ jatinkala$ env | grep LD
> 134:~ jatinkala$ which ncl
> /usr/local/ncl-6.3.0/bin/ncl
> 134:~ jatinkala$ otool -L `which ncl`
> /usr/local/ncl-6.3.0/bin/ncl:
> /opt/X11/lib/libpng15.15.dylib (compatibility version 34.0.0,
> current version 34.0.0)
> /opt/X11/lib/libcairo.2.dylib (compatibility version 11203.0.0,
> current version 11203.16.0)
> /opt/X11/lib/libfontconfig.1.dylib (compatibility version 10.0.0,
> current version 10.0.0)
> /opt/X11/lib/libpixman-1.0.dylib (compatibility version 33.0.0,
> current version 33.6.0)
> /opt/X11/lib/libfreetype.6.dylib (compatibility version 18.0.0,
> current version 18.2.0)
> /opt/X11/lib/libXrender.1.dylib (compatibility version 5.0.0,
> current version 5.0.0)
> /usr/lib/libbz2.1.0.dylib (compatibility version 1.0.0, current
> version 1.0.5)
> /usr/lib/libiconv.2.dylib (compatibility version 7.0.0, current
> version 7.0.0)
> /opt/X11/lib/libXpm.4.dylib (compatibility version 16.0.0, current
> version 16.0.0)
> /opt/X11/lib/libX11.6.dylib (compatibility version 10.0.0, current
> version 10.0.0)
> /opt/X11/lib/libXext.6.dylib (compatibility version 11.0.0,
> current version 11.0.0)
> /usr/local/lib/libgfortran.3.dylib (compatibility version 4.0.0,
> current version 4.0.0)
> /usr/local/lib/libquadmath.0.dylib (compatibility version 1.0.0,
> current version 1.0.0)
> /usr/local/lib/libstdc++.6.dylib (compatibility version 7.0.0,
> current version 7.20.0)
> /usr/local/lib/libgomp.1.dylib (compatibility version 2.0.0,
> current version 2.0.0)
> /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current
> version 1213.0.0)
> /usr/local/lib/libgcc_s.1.dylib (compatibility version 1.0.0,
> current version 1.0.0)
> 134:~ jatinkala$ which gcc
> /usr/bin/gcc
> 134:~ jatinkala$ which gfortran
> /usr/local/bin/gfortran
> 134:~ jatinkala$
>
>
> On Tue, Jan 26, 2016 at 5:46 AM, Mary Haley <haley at ucar.edu
> <mailto:haley at ucar.edu>> wrote:
>
> Jatin,
>
> I think there is something wrong with your environment. In
> general, you shouldn't be needing to create softlinks or set
> DYLD_XXXXX.
>
> What does the following report on your system:
>
> env | grep NCARG
> env | grep LD
> which ncl
> otool -L `which ncl`
> which gcc
> which gfortran
>
> --Mary
>
>
> On Sun, Jan 24, 2016 at 6:38 PM, Jatin Kala
> <jatin.kala.jk at gmail.com <mailto:jatin.kala.jk at gmail.com>> wrote:
>
> Hi,
> I am trying to install ncl on a new mac:
> OX X El Capitan, 10.11.3
>
> The pre-compiled binary is:
> ncl_ncarg-6.3.0.MacOS_10.10_64bit_nodap_gcc492.tar.gz
>
> ncl -v works:
> $ ncl -v
> Unknown option `-v'
> Copyright (C) 1995-2015 - All Rights Reserved
> University Corporation for Atmospheric Research
> NCAR Command Language Version 6.3.0
> The use of this software is governed by a License Agreement.
> See http://www.ncl.ucar.edu/ for more details.
> ncl 0>
>
>
> but the ng4ex command fails, even though i have set
> DYLD_FALLBACK_LIBRARY_PATH to gcc5:
>
> $ echo $DYLD_FALLBACK_LIBRARY_PATH
> /opt/local/lib/gcc5
> $ ls -l /opt/local/lib/gcc5/libgomp.1.dylib
> lrwxr-xr-x 1 root admin 37 22 Jan 17:38
> /opt/local/lib/gcc5/libgomp.1.dylib ->
> /opt/local/lib/libgcc/libgomp.1.dylib
> $ ng4ex gsun01n -clean
> dyld: Library not loaded: /usr/local/lib/libgomp.1.dylib
> Referenced from: /usr/local/ncl-6.3.0/bin/ncargpath
> Reason: image not found
> Trace/BPT trap
>
> contents of .profile:
> $ cat ~/.profile
>
> # MacPorts Installer addition on 2016-01-22_at_14:17:32:
> adding an appropriate PATH variable for use with MacPorts.
> export PATH="/opt/local/bin:/opt/local/sbin:$PATH"
> # Finished adapting your PATH environment variable for use
> with MacPorts.
> export DYLD_FALLBACK_LIBRARY_PATH=/opt/local/lib/gcc5
> export NCARG_ROOT=/usr/local/ncl-6.3.0
> export PATH=$NCARG_ROOT/bin:$PATH
> export DYLD_LIBRARY_PATH=/usr/local/gfortran/lib/
> export CLICOLOR=1
> export LSCOLORS=ExFxCxDxBxegedabagacad
>
>
> Any ideas?
> Cheers,
> Jatin
>
>
>
>
>
>
>
>
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>
>
--
Dr. Jatin Kala
Lecturer in Atmospheric Science
Murdoch University,Perth, Western Australia
Tel: (+618) 9360 6297
http://www.jatinkala.com/
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