[Met_help] [rt.rap.ucar.edu #91137] History for Installing METviewer

Tatiana Burek via RT met_help at ucar.edu
Thu Apr 2 12:56:59 MDT 2020


----------------------------------------------------------------
  Initial Request
----------------------------------------------------------------

I am starting the preps to have METViewer installed on my local linux workstation. I already have Java and need to have R and MySQL installed. Anything else?

R/
John

----------------------------------------------------------------
  Complete Ticket History
----------------------------------------------------------------

Subject: Installing METviewer
From: Tatiana Burek
Time: Thu Jul 18 11:01:31 2019

Hi John,
Are you planning to run METviewer using the batch mode only (from the
command line with XML configuration) or with the web user interface
option? If you need UI you need to install Tomcat. With Tomcat only,
you can access UI using http://localhost:8080/metviewer. For more
advanced  settings you need to use Apache/Tomcat configurations.
You also need to install R packages from R console:
install.packages('boot')
install.packages('plotrix')
install.packages('gsl')
install.packages('data.table')
install.packages('verification')

I can build METviewer modules for you or you can do it by yourself. In
this case you need to install Ant. Let me know your preference.
What is the version of Java you going to use?

Tatiana

Tatiana

On Thu Jul 18 09:36:43 2019, johnhg wrote:
> I am starting the preps to have METViewer installed on my local
linux
> workstation. I already have Java and need to have R and MySQL
> installed. Anything else?
>
> R/
> John



------------------------------------------------
Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing METviewer
From: Raby, John W USA CIV
Time: Thu Jul 18 11:46:11 2019

Tatiana -

Thanks for your offer to assist with installing METViewer and the
details on the software required and configuration options. I'm
consulting with my linux system admin on how to proceed with
provisioning my workstation with R, MySQL, Java, Tomcat and Ant. I
will be back in touch when I know what his assessment of the situation
is.

R/
John
________________________________________
From: Tatiana Burek via RT [met_help at ucar.edu]
Sent: Thursday, July 18, 2019 11:01 AM
To: Raby, John W CIV USARMY CCDC ARL (USA)
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

All active links contained in this email were disabled.  Please verify
the identity of the sender, and confirm the authenticity of all links
contained within the message prior to copying and pasting the address
to a Web browser.




----

Hi John,
Are you planning to run METviewer using the batch mode only (from the
command line with XML configuration) or with the web user interface
option? If you need UI you need to install Tomcat. With Tomcat only,
you can access UI using Caution-http://localhost:8080/metviewer. For
more advanced  settings you need to use Apache/Tomcat configurations.
You also need to install R packages from R console:
install.packages('boot')
install.packages('plotrix')
install.packages('gsl')
install.packages('data.table')
install.packages('verification')

I can build METviewer modules for you or you can do it by yourself. In
this case you need to install Ant. Let me know your preference.
What is the version of Java you going to use?

Tatiana

Tatiana

On Thu Jul 18 09:36:43 2019, johnhg wrote:
> I am starting the preps to have METViewer installed on my local
linux
> workstation. I already have Java and need to have R and MySQL
> installed. Anything else?
>
> R/
> John





------------------------------------------------
Subject: Installing METviewer
From: Raby, John W USA CIV
Time: Thu Jul 18 14:00:51 2019

CLASSIFICATION: UNCLASSIFIED

Tatiana -

My system admin has started the provisioning of my workstation.

In answer to your question about Java the following shows the version:
java -version
java version "1.8.0_212"
Java(TM) SE Runtime Environment (build 1.8.0_212-b10)
Java HotSpot(TM) 64-Bit Server VM (build 25.212-b10, mixed mode)

Regards my preference for the running mode, I would like to use the
web UI. Is
there a version requirement for Tomcat?

He has installed MariaDB (myql for RHEL7) and is currently in the
process of
installing R. I assume that once R is installed that I can install the
packages you mention below, correct?

I'm not quite sure what METViewer modules are for answering your
question
about whether I want to build them or have you do it. Could you
provide more
explanation or point me to where I can read more?

R/
John



-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Thursday, July 18, 2019 11:02 AM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

All active links contained in this email were disabled.  Please verify
the
identity of the sender, and confirm the authenticity of all links
contained
within the message prior to copying and pasting the address to a Web
browser.




----

Hi John,
Are you planning to run METviewer using the batch mode only (from the
command
line with XML configuration) or with the web user interface option? If
you
need UI you need to install Tomcat. With Tomcat only, you can access
UI using
Caution-http://localhost:8080/metviewer. For more advanced  settings
you need
to use Apache/Tomcat configurations.
You also need to install R packages from R console:
install.packages('boot')
install.packages('plotrix')
install.packages('gsl')
install.packages('data.table')
install.packages('verification')

I can build METviewer modules for you or you can do it by yourself. In
this
case you need to install Ant. Let me know your preference.
What is the version of Java you going to use?

Tatiana

Tatiana

On Thu Jul 18 09:36:43 2019, johnhg wrote:
> I am starting the preps to have METViewer installed on my local
linux
> workstation. I already have Java and need to have R and MySQL
> installed. Anything else?
>
> R/
> John



CLASSIFICATION: UNCLASSIFIED

------------------------------------------------
Subject: Installing METviewer
From: Tatiana Burek
Time: Thu Jul 18 14:24:20 2019

- METviewer will work with any version of Tomcat starting from Tomcat6
and ending with  Tomcat8.
- You can install packages after R is installed.
- METviewer supports MariaDB. We use this setup on one of our servers
- By  modules I mean the load/batch portion of METviewer ( the command
line interface ) and the web application.

The batch/load module is basically a folder with scripts and
executables. Web application comes as a .war file that can be put
under Tomcat.
Ant build script requires some setting variables and builds both
modules OR
you would give me settings and I build modules for you.

Tatiana


On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> My system admin has started the provisioning of my workstation.
>
> In answer to your question about Java the following shows the
version:
> java -version
> java version "1.8.0_212"
> Java(TM) SE Runtime Environment (build 1.8.0_212-b10)
> Java HotSpot(TM) 64-Bit Server VM (build 25.212-b10, mixed mode)
>
> Regards my preference for the running mode, I would like to use the
> web UI. Is
> there a version requirement for Tomcat?
>
> He has installed MariaDB (myql for RHEL7) and is currently in the
> process of
> installing R. I assume that once R is installed that I can install
the
> packages you mention below, correct?
>
> I'm not quite sure what METViewer modules are for answering your
> question
> about whether I want to build them or have you do it. Could you
> provide more
> explanation or point me to where I can read more?
>
> R/
> John
>
>
>
> -----Original Message-----
> From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, July 18, 2019 11:02 AM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> All active links contained in this email were disabled.  Please
verify
> the
> identity of the sender, and confirm the authenticity of all links
> contained
> within the message prior to copying and pasting the address to a Web
> browser.
>
>
>
>
> ----
>
> Hi John,
>  Are you planning to run METviewer using the batch mode only (from
the
> command
>  line with XML configuration) or with the web user interface option?
> If you
>  need UI you need to install Tomcat. With Tomcat only, you can
access
> UI using
>  Caution-http://localhost:8080/metviewer. For more advanced
settings
> you need
> to use Apache/Tomcat configurations.
> You also need to install R packages from R console:
> install.packages('boot')
> install.packages('plotrix')
> install.packages('gsl')
> install.packages('data.table')
> install.packages('verification')
>
> I can build METviewer modules for you or you can do it by yourself.
In
> this
> case you need to install Ant. Let me know your preference.
> What is the version of Java you going to use?
>
> Tatiana
>
> Tatiana
>
> On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > I am starting the preps to have METViewer installed on my local
linux
> > workstation. I already have Java and need to have R and MySQL
> > installed. Anything else?
> >
> > R/
> > John
>
>
>
> CLASSIFICATION: UNCLASSIFIED



------------------------------------------------
Subject: Installing METviewer
From: Raby, John W USA CIV
Time: Fri Jul 19 10:39:13 2019

CLASSIFICATION: UNCLASSIFIED

Tatiana -

At this time, the system admin has the following installed on my
workstation:
MariaDB, Java, Tomcat, and R

He says that a .war file is needed and that it must be placed in a
specific
directory under Tomcat to allow the METViewer to deploy.

Based on this, what is the next step?

Thanks.

R/
John


-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Thursday, July 18, 2019 2:24 PM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

- METviewer will work with any version of Tomcat starting from Tomcat6
and
ending with  Tomcat8.
- You can install packages after R is installed.
- METviewer supports MariaDB. We use this setup on one of our servers
- By  modules I mean the load/batch portion of METviewer ( the command
line
interface ) and the web application.

The batch/load module is basically a folder with scripts and
executables. Web
application comes as a .war file that can be put under Tomcat.
Ant build script requires some setting variables and builds both
modules OR
you would give me settings and I build modules for you.

Tatiana


On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> My system admin has started the provisioning of my workstation.
>
> In answer to your question about Java the following shows the
version:
> java -version
> java version "1.8.0_212"
> Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
HotSpot(TM)
> 64-Bit Server VM (build 25.212-b10, mixed mode)
>
> Regards my preference for the running mode, I would like to use the
> web UI. Is there a version requirement for Tomcat?
>
> He has installed MariaDB (myql for RHEL7) and is currently in the
> process of installing R. I assume that once R is installed that I
can
> install the packages you mention below, correct?
>
> I'm not quite sure what METViewer modules are for answering your
> question about whether I want to build them or have you do it. Could
> you provide more explanation or point me to where I can read more?
>
> R/
> John
>
>
>
> -----Original Message-----
> From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, July 18, 2019 11:02 AM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> All active links contained in this email were disabled.  Please
verify
> the identity of the sender, and confirm the authenticity of all
links
> contained within the message prior to copying and pasting the
address
> to a Web browser.
>
>
>
>
> ----
>
> Hi John,
>  Are you planning to run METviewer using the batch mode only (from
the
> command  line with XML configuration) or with the web user interface
> option?
> If you
>  need UI you need to install Tomcat. With Tomcat only, you can
access
> UI using  Caution-http://localhost:8080/metviewer. For more advanced
> settings you need to use Apache/Tomcat configurations.
> You also need to install R packages from R console:
> install.packages('boot')
> install.packages('plotrix')
> install.packages('gsl')
> install.packages('data.table')
> install.packages('verification')
>
> I can build METviewer modules for you or you can do it by yourself.
In
> this case you need to install Ant. Let me know your preference.
> What is the version of Java you going to use?
>
> Tatiana
>
> Tatiana
>
> On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > I am starting the preps to have METViewer installed on my local
> > linux workstation. I already have Java and need to have R and
MySQL
> > installed. Anything else?
> >
> > R/
> > John
>
>
>
> CLASSIFICATION: UNCLASSIFIED



CLASSIFICATION: UNCLASSIFIED

------------------------------------------------
Subject: Installing METviewer
From: Tatiana Burek
Time: Fri Jul 19 12:05:24 2019

Hi John,
Were you able to install the additional R packages?
I can build and provide you .war file as well as other executables.
For that, I need some parameters  to build these files:
- database host and port. By default it is localhost:3306. Will this
apply to your server?
- database user name and password. This is for the user that would
insert and retrieve date to/from database
- the path to Rscript executable. By default it is just Rscript.Will
this apply to your server?
- the path to Tomcat's webapp directory
- the path where the executables will be installed.
- path to Java. By default it is java. Will this apply to your server?

Tatiana


On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> At this time, the system admin has the following installed on my
> workstation:
> MariaDB, Java, Tomcat, and R
>
> He says that a .war file is needed and that it must be placed in a
> specific
> directory under Tomcat to allow the METViewer to deploy.
>
> Based on this, what is the next step?
>
> Thanks.
>
> R/
> John
>
>
> -----Original Message-----
> From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, July 18, 2019 2:24 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> - METviewer will work with any version of Tomcat starting from
Tomcat6
> and
> ending with  Tomcat8.
> - You can install packages after R is installed.
> - METviewer supports MariaDB. We use this setup on one of our
servers
> - By  modules I mean the load/batch portion of METviewer ( the
command
> line
> interface ) and the web application.
>
> The batch/load module is basically a folder with scripts and
> executables. Web
> application comes as a .war file that can be put under Tomcat.
> Ant build script requires some setting variables and builds both
> modules OR
> you would give me settings and I build modules for you.
>
> Tatiana
>
>
> On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > My system admin has started the provisioning of my workstation.
> >
> > In answer to your question about Java the following shows the
> > version:
> > java -version
> > java version "1.8.0_212"
> > Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
> > HotSpot(TM)
> > 64-Bit Server VM (build 25.212-b10, mixed mode)
> >
> > Regards my preference for the running mode, I would like to use
the
> > web UI. Is there a version requirement for Tomcat?
> >
> > He has installed MariaDB (myql for RHEL7) and is currently in the
> > process of installing R. I assume that once R is installed that I
can
> > install the packages you mention below, correct?
> >
> > I'm not quite sure what METViewer modules are for answering your
> > question about whether I want to build them or have you do it.
Could
> > you provide more explanation or point me to where I can read more?
> >
> > R/
> > John
> >
> >
> >
> > -----Original Message-----
> > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, July 18, 2019 11:02 AM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > All active links contained in this email were disabled.  Please
> > verify
> > the identity of the sender, and confirm the authenticity of all
links
> > contained within the message prior to copying and pasting the
address
> > to a Web browser.
> >
> >
> >
> >
> > ----
> >
> > Hi John,
> >  Are you planning to run METviewer using the batch mode only (from
> > the
> > command  line with XML configuration) or with the web user
interface
> > option?
> > If you
> >  need UI you need to install Tomcat. With Tomcat only, you can
access
> > UI using  Caution-http://localhost:8080/metviewer. For more
advanced
> > settings you need to use Apache/Tomcat configurations.
> > You also need to install R packages from R console:
> > install.packages('boot')
> > install.packages('plotrix')
> > install.packages('gsl')
> > install.packages('data.table')
> > install.packages('verification')
> >
> > I can build METviewer modules for you or you can do it by
yourself.
> > In
> > this case you need to install Ant. Let me know your preference.
> > What is the version of Java you going to use?
> >
> > Tatiana
> >
> > Tatiana
> >
> > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > I am starting the preps to have METViewer installed on my local
> > > linux workstation. I already have Java and need to have R and
MySQL
> > > installed. Anything else?
> > >
> > > R/
> > > John
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



------------------------------------------------
Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing METviewer
From: Raby, John W USA CIV
Time: Fri Jul 19 12:39:28 2019

Tatiana -

Thanks for the info and guidance.

I tried loading the R packages with user permissions, but it can't due
to an apparent permissions issue. See the following dialog:
> install.packages('boot')
Warning in install.packages("boot") :
  'lib = "/home/jraby/R/R-3.6.1/library"' is not writable
Would you like to use a personal library instead? (yes/No/cancel)

If I set up a "personal" library as they suggest, will METViewer have
an issue?

The path to Rscript is /home/jraby/R/R-3.6.1/bin

My system admin is working on getting answers to the remaining
questions.

R/
John


________________________________________
From: Tatiana Burek via RT [met_help at ucar.edu]
Sent: Friday, July 19, 2019 12:05 PM
To: Raby, John W CIV USARMY CCDC ARL (USA)
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

Hi John,
Were you able to install the additional R packages?
I can build and provide you .war file as well as other executables.
For that, I need some parameters  to build these files:
- database host and port. By default it is localhost:3306. Will this
apply to your server?
- database user name and password. This is for the user that would
insert and retrieve date to/from database
- the path to Rscript executable. By default it is just Rscript.Will
this apply to your server?
- the path to Tomcat's webapp directory
- the path where the executables will be installed.
- path to Java. By default it is java. Will this apply to your server?

Tatiana


On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> At this time, the system admin has the following installed on my
> workstation:
> MariaDB, Java, Tomcat, and R
>
> He says that a .war file is needed and that it must be placed in a
> specific
> directory under Tomcat to allow the METViewer to deploy.
>
> Based on this, what is the next step?
>
> Thanks.
>
> R/
> John
>
>
> -----Original Message-----
> From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, July 18, 2019 2:24 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> - METviewer will work with any version of Tomcat starting from
Tomcat6
> and
> ending with  Tomcat8.
> - You can install packages after R is installed.
> - METviewer supports MariaDB. We use this setup on one of our
servers
> - By  modules I mean the load/batch portion of METviewer ( the
command
> line
> interface ) and the web application.
>
> The batch/load module is basically a folder with scripts and
> executables. Web
> application comes as a .war file that can be put under Tomcat.
> Ant build script requires some setting variables and builds both
> modules OR
> you would give me settings and I build modules for you.
>
> Tatiana
>
>
> On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > My system admin has started the provisioning of my workstation.
> >
> > In answer to your question about Java the following shows the
> > version:
> > java -version
> > java version "1.8.0_212"
> > Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
> > HotSpot(TM)
> > 64-Bit Server VM (build 25.212-b10, mixed mode)
> >
> > Regards my preference for the running mode, I would like to use
the
> > web UI. Is there a version requirement for Tomcat?
> >
> > He has installed MariaDB (myql for RHEL7) and is currently in the
> > process of installing R. I assume that once R is installed that I
can
> > install the packages you mention below, correct?
> >
> > I'm not quite sure what METViewer modules are for answering your
> > question about whether I want to build them or have you do it.
Could
> > you provide more explanation or point me to where I can read more?
> >
> > R/
> > John
> >
> >
> >
> > -----Original Message-----
> > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, July 18, 2019 11:02 AM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > All active links contained in this email were disabled.  Please
> > verify
> > the identity of the sender, and confirm the authenticity of all
links
> > contained within the message prior to copying and pasting the
address
> > to a Web browser.
> >
> >
> >
> >
> > ----
> >
> > Hi John,
> >  Are you planning to run METviewer using the batch mode only (from
> > the
> > command  line with XML configuration) or with the web user
interface
> > option?
> > If you
> >  need UI you need to install Tomcat. With Tomcat only, you can
access
> > UI using  Caution-http://localhost:8080/metviewer. For more
advanced
> > settings you need to use Apache/Tomcat configurations.
> > You also need to install R packages from R console:
> > install.packages('boot')
> > install.packages('plotrix')
> > install.packages('gsl')
> > install.packages('data.table')
> > install.packages('verification')
> >
> > I can build METviewer modules for you or you can do it by
yourself.
> > In
> > this case you need to install Ant. Let me know your preference.
> > What is the version of Java you going to use?
> >
> > Tatiana
> >
> > Tatiana
> >
> > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > I am starting the preps to have METViewer installed on my local
> > > linux workstation. I already have Java and need to have R and
MySQL
> > > installed. Anything else?
> > >
> > > R/
> > > John
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED





------------------------------------------------
Subject: Installing METviewer
From: Tatiana Burek
Time: Fri Jul 19 12:57:17 2019

METviewer can work with personal libraries. Let me know the path and I
add it to build.
Is it /home/jraby/R/R-3.6.1/library?

Tatiana

On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil wrote:
> Tatiana -
>
> Thanks for the info and guidance.
>
> I tried loading the R packages with user permissions, but it can't
due
> to an apparent permissions issue. See the following dialog:
> > install.packages('boot')
> Warning in install.packages("boot") :
>   'lib = "/home/jraby/R/R-3.6.1/library"' is not writable
> Would you like to use a personal library instead? (yes/No/cancel)
>
> If I set up a "personal" library as they suggest, will METViewer
have
> an issue?
>
> The path to Rscript is /home/jraby/R/R-3.6.1/bin
>
> My system admin is working on getting answers to the remaining
> questions.
>
> R/
> John
>
>
> ________________________________________
> From: Tatiana Burek via RT [met_help at ucar.edu]
> Sent: Friday, July 19, 2019 12:05 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> Hi John,
> Were you able to install the additional R packages?
> I can build and provide you .war file as well as other executables.
> For that, I need some parameters  to build these files:
> - database host and port. By default it is localhost:3306. Will this
> apply to your server?
> - database user name and password. This is for the user that would
> insert and retrieve date to/from database
> - the path to Rscript executable. By default it is just Rscript.Will
> this apply to your server?
> - the path to Tomcat's webapp directory
> - the path where the executables will be installed.
> - path to Java. By default it is java. Will this apply to your
server?
>
> Tatiana
>
>
> On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > At this time, the system admin has the following installed on my
> > workstation:
> > MariaDB, Java, Tomcat, and R
> >
> > He says that a .war file is needed and that it must be placed in a
> > specific
> > directory under Tomcat to allow the METViewer to deploy.
> >
> > Based on this, what is the next step?
> >
> > Thanks.
> >
> > R/
> > John
> >
> >
> > -----Original Message-----
> > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, July 18, 2019 2:24 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > - METviewer will work with any version of Tomcat starting from
> > Tomcat6
> > and
> > ending with  Tomcat8.
> > - You can install packages after R is installed.
> > - METviewer supports MariaDB. We use this setup on one of our
servers
> > - By  modules I mean the load/batch portion of METviewer ( the
> > command
> > line
> > interface ) and the web application.
> >
> > The batch/load module is basically a folder with scripts and
> > executables. Web
> > application comes as a .war file that can be put under Tomcat.
> > Ant build script requires some setting variables and builds both
> > modules OR
> > you would give me settings and I build modules for you.
> >
> > Tatiana
> >
> >
> > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > My system admin has started the provisioning of my workstation.
> > >
> > > In answer to your question about Java the following shows the
> > > version:
> > > java -version
> > > java version "1.8.0_212"
> > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
> > > HotSpot(TM)
> > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > >
> > > Regards my preference for the running mode, I would like to use
the
> > > web UI. Is there a version requirement for Tomcat?
> > >
> > > He has installed MariaDB (myql for RHEL7) and is currently in
the
> > > process of installing R. I assume that once R is installed that
I
> > > can
> > > install the packages you mention below, correct?
> > >
> > > I'm not quite sure what METViewer modules are for answering your
> > > question about whether I want to build them or have you do it.
> > > Could
> > > you provide more explanation or point me to where I can read
more?
> > >
> > > R/
> > > John
> > >
> > >
> > >
> > > -----Original Message-----
> > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, July 18, 2019 11:02 AM
> > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > All active links contained in this email were disabled.  Please
> > > verify
> > > the identity of the sender, and confirm the authenticity of all
> > > links
> > > contained within the message prior to copying and pasting the
> > > address
> > > to a Web browser.
> > >
> > >
> > >
> > >
> > > ----
> > >
> > > Hi John,
> > >  Are you planning to run METviewer using the batch mode only
(from
> > > the
> > > command  line with XML configuration) or with the web user
> > > interface
> > > option?
> > > If you
> > >  need UI you need to install Tomcat. With Tomcat only, you can
> > > access
> > > UI using  Caution-http://localhost:8080/metviewer. For more
> > > advanced
> > > settings you need to use Apache/Tomcat configurations.
> > > You also need to install R packages from R console:
> > > install.packages('boot')
> > > install.packages('plotrix')
> > > install.packages('gsl')
> > > install.packages('data.table')
> > > install.packages('verification')
> > >
> > > I can build METviewer modules for you or you can do it by
yourself.
> > > In
> > > this case you need to install Ant. Let me know your preference.
> > > What is the version of Java you going to use?
> > >
> > > Tatiana
> > >
> > > Tatiana
> > >
> > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > I am starting the preps to have METViewer installed on my
local
> > > > linux workstation. I already have Java and need to have R and
> > > > MySQL
> > > > installed. Anything else?
> > > >
> > > > R/
> > > > John
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED



------------------------------------------------
Subject: Installing METviewer
From: Raby, John W USA CIV
Time: Fri Jul 19 15:23:49 2019

CLASSIFICATION: UNCLASSIFIED

Tatiana -

My system admin was able to change the permissions on the library and
all
other directories in the install directory and I was able to load the
first R
package successfully at:
/home/jraby/R/R-3.6.1/library

My system admin was working on obtaining the rest of the info you
requested.
Unfortunately, the workstation would not complete a reboot and cannot
be
accessed now. He is looking into resolving that problem now. Not sure
whether
the problem is connected with the installation of the new apps
associated with
getting the system provisioned for METViewer, but it is strangely
coincident.

I'll be back in touch on Monday to provide an update on the status.

Have a great weekend!

R/
John

-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Friday, July 19, 2019 12:57 PM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

METviewer can work with personal libraries. Let me know the path and I
add it
to build.
Is it /home/jraby/R/R-3.6.1/library?

Tatiana

On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil wrote:
> Tatiana -
>
> Thanks for the info and guidance.
>
> I tried loading the R packages with user permissions, but it can't
due
> to an apparent permissions issue. See the following dialog:
> > install.packages('boot')
> Warning in install.packages("boot") :
>   'lib = "/home/jraby/R/R-3.6.1/library"' is not writable Would you
> like to use a personal library instead? (yes/No/cancel)
>
> If I set up a "personal" library as they suggest, will METViewer
have
> an issue?
>
> The path to Rscript is /home/jraby/R/R-3.6.1/bin
>
> My system admin is working on getting answers to the remaining
> questions.
>
> R/
> John
>
>
> ________________________________________
> From: Tatiana Burek via RT [met_help at ucar.edu]
> Sent: Friday, July 19, 2019 12:05 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> Hi John,
> Were you able to install the additional R packages?
> I can build and provide you .war file as well as other executables.
> For that, I need some parameters  to build these files:
> - database host and port. By default it is localhost:3306. Will this
> apply to your server?
> - database user name and password. This is for the user that would
> insert and retrieve date to/from database
> - the path to Rscript executable. By default it is just Rscript.Will
> this apply to your server?
> - the path to Tomcat's webapp directory
> - the path where the executables will be installed.
> - path to Java. By default it is java. Will this apply to your
server?
>
> Tatiana
>
>
> On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > At this time, the system admin has the following installed on my
> > workstation:
> > MariaDB, Java, Tomcat, and R
> >
> > He says that a .war file is needed and that it must be placed in a
> > specific directory under Tomcat to allow the METViewer to deploy.
> >
> > Based on this, what is the next step?
> >
> > Thanks.
> >
> > R/
> > John
> >
> >
> > -----Original Message-----
> > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, July 18, 2019 2:24 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > - METviewer will work with any version of Tomcat starting from
> > Tomcat6
> > and
> > ending with  Tomcat8.
> > - You can install packages after R is installed.
> > - METviewer supports MariaDB. We use this setup on one of our
> > servers
> > - By  modules I mean the load/batch portion of METviewer ( the
> > command line interface ) and the web application.
> >
> > The batch/load module is basically a folder with scripts and
> > executables. Web application comes as a .war file that can be put
> > under Tomcat.
> > Ant build script requires some setting variables and builds both
> > modules OR you would give me settings and I build modules for you.
> >
> > Tatiana
> >
> >
> > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > My system admin has started the provisioning of my workstation.
> > >
> > > In answer to your question about Java the following shows the
> > > version:
> > > java -version
> > > java version "1.8.0_212"
> > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
> > > HotSpot(TM)
> > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > >
> > > Regards my preference for the running mode, I would like to use
> > > the web UI. Is there a version requirement for Tomcat?
> > >
> > > He has installed MariaDB (myql for RHEL7) and is currently in
the
> > > process of installing R. I assume that once R is installed that
I
> > > can install the packages you mention below, correct?
> > >
> > > I'm not quite sure what METViewer modules are for answering your
> > > question about whether I want to build them or have you do it.
> > > Could
> > > you provide more explanation or point me to where I can read
more?
> > >
> > > R/
> > > John
> > >
> > >
> > >
> > > -----Original Message-----
> > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, July 18, 2019 11:02 AM
> > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > All active links contained in this email were disabled.  Please
> > > verify the identity of the sender, and confirm the authenticity
of
> > > all links contained within the message prior to copying and
> > > pasting the address to a Web browser.
> > >
> > >
> > >
> > >
> > > ----
> > >
> > > Hi John,
> > >  Are you planning to run METviewer using the batch mode only
(from
> > > the command  line with XML configuration) or with the web user
> > > interface option?
> > > If you
> > >  need UI you need to install Tomcat. With Tomcat only, you can
> > > access UI using  Caution-http://localhost:8080/metviewer. For
more
> > > advanced settings you need to use Apache/Tomcat configurations.
> > > You also need to install R packages from R console:
> > > install.packages('boot')
> > > install.packages('plotrix')
> > > install.packages('gsl')
> > > install.packages('data.table')
> > > install.packages('verification')
> > >
> > > I can build METviewer modules for you or you can do it by
yourself.
> > > In
> > > this case you need to install Ant. Let me know your preference.
> > > What is the version of Java you going to use?
> > >
> > > Tatiana
> > >
> > > Tatiana
> > >
> > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > I am starting the preps to have METViewer installed on my
local
> > > > linux workstation. I already have Java and need to have R and
> > > > MySQL installed. Anything else?
> > > >
> > > > R/
> > > > John
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED



CLASSIFICATION: UNCLASSIFIED

------------------------------------------------
Subject: Installing METviewer
From: Raby, John W USA CIV
Time: Thu Jul 25 08:58:59 2019

CLASSIFICATION: UNCLASSIFIED

Tatiana -

FYI, the issue with my workstation has been resolved and I should
receive it
back in my office today. I will load the remaining R packages which
you listed
in your earlier email. I'll have my system admin send you the info you
requested last week soon.

R/
John

-----Original Message-----
From: Raby, John W CIV USARMY CCDC ARL (USA)
Sent: Friday, July 19, 2019 3:23 PM
To: 'met_help at ucar.edu' <met_help at ucar.edu>
Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer
(UNCLASSIFIED)

CLASSIFICATION: UNCLASSIFIED

Tatiana -

My system admin was able to change the permissions on the library and
all
other directories in the install directory and I was able to load the
first R
package successfully at:
/home/jraby/R/R-3.6.1/library

My system admin was working on obtaining the rest of the info you
requested.
Unfortunately, the workstation would not complete a reboot and cannot
be
accessed now. He is looking into resolving that problem now. Not sure
whether
the problem is connected with the installation of the new apps
associated with
getting the system provisioned for METViewer, but it is strangely
coincident.

I'll be back in touch on Monday to provide an update on the status.

Have a great weekend!

R/
John

-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Friday, July 19, 2019 12:57 PM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

METviewer can work with personal libraries. Let me know the path and I
add it
to build.
Is it /home/jraby/R/R-3.6.1/library?

Tatiana

On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil wrote:
> Tatiana -
>
> Thanks for the info and guidance.
>
> I tried loading the R packages with user permissions, but it can't
due
> to an apparent permissions issue. See the following dialog:
> > install.packages('boot')
> Warning in install.packages("boot") :
>   'lib = "/home/jraby/R/R-3.6.1/library"' is not writable Would you
> like to use a personal library instead? (yes/No/cancel)
>
> If I set up a "personal" library as they suggest, will METViewer
have
> an issue?
>
> The path to Rscript is /home/jraby/R/R-3.6.1/bin
>
> My system admin is working on getting answers to the remaining
> questions.
>
> R/
> John
>
>
> ________________________________________
> From: Tatiana Burek via RT [met_help at ucar.edu]
> Sent: Friday, July 19, 2019 12:05 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> Hi John,
> Were you able to install the additional R packages?
> I can build and provide you .war file as well as other executables.
> For that, I need some parameters  to build these files:
> - database host and port. By default it is localhost:3306. Will this
> apply to your server?
> - database user name and password. This is for the user that would
> insert and retrieve date to/from database
> - the path to Rscript executable. By default it is just Rscript.Will
> this apply to your server?
> - the path to Tomcat's webapp directory
> - the path where the executables will be installed.
> - path to Java. By default it is java. Will this apply to your
server?
>
> Tatiana
>
>
> On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > At this time, the system admin has the following installed on my
> > workstation:
> > MariaDB, Java, Tomcat, and R
> >
> > He says that a .war file is needed and that it must be placed in a
> > specific directory under Tomcat to allow the METViewer to deploy.
> >
> > Based on this, what is the next step?
> >
> > Thanks.
> >
> > R/
> > John
> >
> >
> > -----Original Message-----
> > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, July 18, 2019 2:24 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > - METviewer will work with any version of Tomcat starting from
> > Tomcat6
> > and
> > ending with  Tomcat8.
> > - You can install packages after R is installed.
> > - METviewer supports MariaDB. We use this setup on one of our
> > servers
> > - By  modules I mean the load/batch portion of METviewer ( the
> > command line interface ) and the web application.
> >
> > The batch/load module is basically a folder with scripts and
> > executables. Web application comes as a .war file that can be put
> > under Tomcat.
> > Ant build script requires some setting variables and builds both
> > modules OR you would give me settings and I build modules for you.
> >
> > Tatiana
> >
> >
> > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > My system admin has started the provisioning of my workstation.
> > >
> > > In answer to your question about Java the following shows the
> > > version:
> > > java -version
> > > java version "1.8.0_212"
> > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
> > > HotSpot(TM)
> > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > >
> > > Regards my preference for the running mode, I would like to use
> > > the web UI. Is there a version requirement for Tomcat?
> > >
> > > He has installed MariaDB (myql for RHEL7) and is currently in
the
> > > process of installing R. I assume that once R is installed that
I
> > > can install the packages you mention below, correct?
> > >
> > > I'm not quite sure what METViewer modules are for answering your
> > > question about whether I want to build them or have you do it.
> > > Could
> > > you provide more explanation or point me to where I can read
more?
> > >
> > > R/
> > > John
> > >
> > >
> > >
> > > -----Original Message-----
> > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, July 18, 2019 11:02 AM
> > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > All active links contained in this email were disabled.  Please
> > > verify the identity of the sender, and confirm the authenticity
of
> > > all links contained within the message prior to copying and
> > > pasting the address to a Web browser.
> > >
> > >
> > >
> > >
> > > ----
> > >
> > > Hi John,
> > >  Are you planning to run METviewer using the batch mode only
(from
> > > the command  line with XML configuration) or with the web user
> > > interface option?
> > > If you
> > >  need UI you need to install Tomcat. With Tomcat only, you can
> > > access UI using  Caution-http://localhost:8080/metviewer. For
more
> > > advanced settings you need to use Apache/Tomcat configurations.
> > > You also need to install R packages from R console:
> > > install.packages('boot')
> > > install.packages('plotrix')
> > > install.packages('gsl')
> > > install.packages('data.table')
> > > install.packages('verification')
> > >
> > > I can build METviewer modules for you or you can do it by
yourself.
> > > In
> > > this case you need to install Ant. Let me know your preference.
> > > What is the version of Java you going to use?
> > >
> > > Tatiana
> > >
> > > Tatiana
> > >
> > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > I am starting the preps to have METViewer installed on my
local
> > > > linux workstation. I already have Java and need to have R and
> > > > MySQL installed. Anything else?
> > > >
> > > > R/
> > > > John
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED



CLASSIFICATION: UNCLASSIFIED
CLASSIFICATION: UNCLASSIFIED

------------------------------------------------
Subject: Installing METviewer
From: Raby, John W USA CIV
Time: Wed Jul 31 11:45:51 2019

CLASSIFICATION: UNCLASSIFIED

Tatiana -

I'm sorry about the delay in getting back to you with an update.

My workstation is fully operational now. I have not had a chance to
load the
remaining R packages.

In answer to the questions you asked me:

- database host and port. By default it is localhost:3306. Will this
apply to
your server?
	YES
- database user name and password. This is for the user that would
insert and
retrieve date to/from database
	ruser / whitesands
- the path to Tomcat's webapp directory
	/opt/tomcat7/webapp
- the path where the R executables will be installed.
	/home/jraby/R/R-3.6.1/bin/
- path to Java. By default it is java. Will this apply to your server?
	/usr/java/jdk1.8.0_212-amd64/jre/bin/java
- path where the METViewer
executables should be located.
	/home/jraby/METViewer

Let me know if you need other details.

R/
John


-----Original Message-----
From: Raby, John W CIV USARMY CCDC ARL (USA)
Sent: Thursday, July 25, 2019 8:35 AM
To: 'met_help at ucar.edu' <met_help at ucar.edu>
Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer
(UNCLASSIFIED)

CLASSIFICATION: UNCLASSIFIED

Tatiana -

FYI, the issue with my workstation has been resolved and I should
receive it
back in my office today. I will load the remaining R packages which
you listed
in your earlier email. I'll have my system admin send you the info you
requested last week soon.

R/
John

-----Original Message-----
From: Raby, John W CIV USARMY CCDC ARL (USA)
Sent: Friday, July 19, 2019 3:23 PM
To: 'met_help at ucar.edu' <met_help at ucar.edu>
Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer
(UNCLASSIFIED)

CLASSIFICATION: UNCLASSIFIED

Tatiana -

My system admin was able to change the permissions on the library and
all
other directories in the install directory and I was able to load the
first R
package successfully at:
/home/jraby/R/R-3.6.1/library

My system admin was working on obtaining the rest of the info you
requested.
Unfortunately, the workstation would not complete a reboot and cannot
be
accessed now. He is looking into resolving that problem now. Not sure
whether
the problem is connected with the installation of the new apps
associated with
getting the system provisioned for METViewer, but it is strangely
coincident.

I'll be back in touch on Monday to provide an update on the status.

Have a great weekend!

R/
John

-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Friday, July 19, 2019 12:57 PM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

METviewer can work with personal libraries. Let me know the path and I
add it
to build.
Is it /home/jraby/R/R-3.6.1/library?

Tatiana

On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil wrote:
> Tatiana -
>
> Thanks for the info and guidance.
>
> I tried loading the R packages with user permissions, but it can't
due
> to an apparent permissions issue. See the following dialog:
> > install.packages('boot')
> Warning in install.packages("boot") :
>   'lib = "/home/jraby/R/R-3.6.1/library"' is not writable Would you
> like to use a personal library instead? (yes/No/cancel)
>
> If I set up a "personal" library as they suggest, will METViewer
have
> an issue?
>
> The path to Rscript is /home/jraby/R/R-3.6.1/bin
>
> My system admin is working on getting answers to the remaining
> questions.
>
> R/
> John
>
>
> ________________________________________
> From: Tatiana Burek via RT [met_help at ucar.edu]
> Sent: Friday, July 19, 2019 12:05 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> Hi John,
> Were you able to install the additional R packages?
> I can build and provide you .war file as well as other executables.
> For that, I need some parameters  to build these files:
> - database host and port. By default it is localhost:3306. Will this
> apply to your server?
> - database user name and password. This is for the user that would
> insert and retrieve date to/from database
> - the path to Rscript executable. By default it is just Rscript.Will
> this apply to your server?
> - the path to Tomcat's webapp directory
> - the path where the executables will be installed.
> - path to Java. By default it is java. Will this apply to your
server?
>
> Tatiana
>
>
> On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > At this time, the system admin has the following installed on my
> > workstation:
> > MariaDB, Java, Tomcat, and R
> >
> > He says that a .war file is needed and that it must be placed in a
> > specific directory under Tomcat to allow the METViewer to deploy.
> >
> > Based on this, what is the next step?
> >
> > Thanks.
> >
> > R/
> > John
> >
> >
> > -----Original Message-----
> > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, July 18, 2019 2:24 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > - METviewer will work with any version of Tomcat starting from
> > Tomcat6
> > and
> > ending with  Tomcat8.
> > - You can install packages after R is installed.
> > - METviewer supports MariaDB. We use this setup on one of our
> > servers
> > - By  modules I mean the load/batch portion of METviewer ( the
> > command line interface ) and the web application.
> >
> > The batch/load module is basically a folder with scripts and
> > executables. Web application comes as a .war file that can be put
> > under Tomcat.
> > Ant build script requires some setting variables and builds both
> > modules OR you would give me settings and I build modules for you.
> >
> > Tatiana
> >
> >
> > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > My system admin has started the provisioning of my workstation.
> > >
> > > In answer to your question about Java the following shows the
> > > version:
> > > java -version
> > > java version "1.8.0_212"
> > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
> > > HotSpot(TM)
> > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > >
> > > Regards my preference for the running mode, I would like to use
> > > the web UI. Is there a version requirement for Tomcat?
> > >
> > > He has installed MariaDB (myql for RHEL7) and is currently in
the
> > > process of installing R. I assume that once R is installed that
I
> > > can install the packages you mention below, correct?
> > >
> > > I'm not quite sure what METViewer modules are for answering your
> > > question about whether I want to build them or have you do it.
> > > Could
> > > you provide more explanation or point me to where I can read
more?
> > >
> > > R/
> > > John
> > >
> > >
> > >
> > > -----Original Message-----
> > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, July 18, 2019 11:02 AM
> > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > All active links contained in this email were disabled.  Please
> > > verify the identity of the sender, and confirm the authenticity
of
> > > all links contained within the message prior to copying and
> > > pasting the address to a Web browser.
> > >
> > >
> > >
> > >
> > > ----
> > >
> > > Hi John,
> > >  Are you planning to run METviewer using the batch mode only
(from
> > > the command  line with XML configuration) or with the web user
> > > interface option?
> > > If you
> > >  need UI you need to install Tomcat. With Tomcat only, you can
> > > access UI using  Caution-http://localhost:8080/metviewer. For
more
> > > advanced settings you need to use Apache/Tomcat configurations.
> > > You also need to install R packages from R console:
> > > install.packages('boot')
> > > install.packages('plotrix')
> > > install.packages('gsl')
> > > install.packages('data.table')
> > > install.packages('verification')
> > >
> > > I can build METviewer modules for you or you can do it by
yourself.
> > > In
> > > this case you need to install Ant. Let me know your preference.
> > > What is the version of Java you going to use?
> > >
> > > Tatiana
> > >
> > > Tatiana
> > >
> > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > I am starting the preps to have METViewer installed on my
local
> > > > linux workstation. I already have Java and need to have R and
> > > > MySQL installed. Anything else?
> > > >
> > > > R/
> > > > John
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED



CLASSIFICATION: UNCLASSIFIED
CLASSIFICATION: UNCLASSIFIED
CLASSIFICATION: UNCLASSIFIED

------------------------------------------------
Subject: Installing METviewer
From: Raby, John W USA CIV
Time: Mon Aug 05 15:21:17 2019

Tatiana -

Today I was able to resume the loading of the R packages you specified
in an earlier email. There were issues encountered when loading 'gsl"
and 'verification'. I'm not sure where to start debugging the issues.
I captured the screen dialog so you can see more specific info about
them. See attached text file.

The R packages which appear to have loaded successfully are:
'boot', 'plotrix', and 'data.table'

What do you recommend for troubleshooting these issues?

At this point, I believe that you have all the info you requested
which was provided in earlier emails.

Let me know if you need additional info to proceed.

Thanks.

R/
John




________________________________________
From: Raby, John W CIV USARMY CCDC ARL (USA)
Sent: Wednesday, July 31, 2019 11:45 AM
To: met_help at ucar.edu
Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer (UNCLASSIFIED)

CLASSIFICATION: UNCLASSIFIED

Tatiana -

I'm sorry about the delay in getting back to you with an update.

My workstation is fully operational now. I have not had a chance to
load the
remaining R packages.

In answer to the questions you asked me:

- database host and port. By default it is localhost:3306. Will this
apply to
your server?
        YES
- database user name and password. This is for the user that would
insert and
retrieve date to/from database
        ruser / whitesands
- the path to Tomcat's webapp directory
        /opt/tomcat7/webapp
- the path where the R executables will be installed.
        /home/jraby/R/R-3.6.1/bin/
- path to Java. By default it is java. Will this apply to your server?
        /usr/java/jdk1.8.0_212-amd64/jre/bin/java
- path where the METViewer
executables should be located.
        /home/jraby/METViewer

Let me know if you need other details.

R/
John


-----Original Message-----
From: Raby, John W CIV USARMY CCDC ARL (USA)
Sent: Thursday, July 25, 2019 8:35 AM
To: 'met_help at ucar.edu' <met_help at ucar.edu>
Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer
(UNCLASSIFIED)

CLASSIFICATION: UNCLASSIFIED

Tatiana -

FYI, the issue with my workstation has been resolved and I should
receive it
back in my office today. I will load the remaining R packages which
you listed
in your earlier email. I'll have my system admin send you the info you
requested last week soon.

R/
John

-----Original Message-----
From: Raby, John W CIV USARMY CCDC ARL (USA)
Sent: Friday, July 19, 2019 3:23 PM
To: 'met_help at ucar.edu' <met_help at ucar.edu>
Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer
(UNCLASSIFIED)

CLASSIFICATION: UNCLASSIFIED

Tatiana -

My system admin was able to change the permissions on the library and
all
other directories in the install directory and I was able to load the
first R
package successfully at:
/home/jraby/R/R-3.6.1/library

My system admin was working on obtaining the rest of the info you
requested.
Unfortunately, the workstation would not complete a reboot and cannot
be
accessed now. He is looking into resolving that problem now. Not sure
whether
the problem is connected with the installation of the new apps
associated with
getting the system provisioned for METViewer, but it is strangely
coincident.

I'll be back in touch on Monday to provide an update on the status.

Have a great weekend!

R/
John

-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Friday, July 19, 2019 12:57 PM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

METviewer can work with personal libraries. Let me know the path and I
add it
to build.
Is it /home/jraby/R/R-3.6.1/library?

Tatiana

On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil wrote:
> Tatiana -
>
> Thanks for the info and guidance.
>
> I tried loading the R packages with user permissions, but it can't
due
> to an apparent permissions issue. See the following dialog:
> > install.packages('boot')
> Warning in install.packages("boot") :
>   'lib = "/home/jraby/R/R-3.6.1/library"' is not writable Would you
> like to use a personal library instead? (yes/No/cancel)
>
> If I set up a "personal" library as they suggest, will METViewer
have
> an issue?
>
> The path to Rscript is /home/jraby/R/R-3.6.1/bin
>
> My system admin is working on getting answers to the remaining
> questions.
>
> R/
> John
>
>
> ________________________________________
> From: Tatiana Burek via RT [met_help at ucar.edu]
> Sent: Friday, July 19, 2019 12:05 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> Hi John,
> Were you able to install the additional R packages?
> I can build and provide you .war file as well as other executables.
> For that, I need some parameters  to build these files:
> - database host and port. By default it is localhost:3306. Will this
> apply to your server?
> - database user name and password. This is for the user that would
> insert and retrieve date to/from database
> - the path to Rscript executable. By default it is just Rscript.Will
> this apply to your server?
> - the path to Tomcat's webapp directory
> - the path where the executables will be installed.
> - path to Java. By default it is java. Will this apply to your
server?
>
> Tatiana
>
>
> On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > At this time, the system admin has the following installed on my
> > workstation:
> > MariaDB, Java, Tomcat, and R
> >
> > He says that a .war file is needed and that it must be placed in a
> > specific directory under Tomcat to allow the METViewer to deploy.
> >
> > Based on this, what is the next step?
> >
> > Thanks.
> >
> > R/
> > John
> >
> >
> > -----Original Message-----
> > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, July 18, 2019 2:24 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > - METviewer will work with any version of Tomcat starting from
> > Tomcat6
> > and
> > ending with  Tomcat8.
> > - You can install packages after R is installed.
> > - METviewer supports MariaDB. We use this setup on one of our
> > servers
> > - By  modules I mean the load/batch portion of METviewer ( the
> > command line interface ) and the web application.
> >
> > The batch/load module is basically a folder with scripts and
> > executables. Web application comes as a .war file that can be put
> > under Tomcat.
> > Ant build script requires some setting variables and builds both
> > modules OR you would give me settings and I build modules for you.
> >
> > Tatiana
> >
> >
> > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > My system admin has started the provisioning of my workstation.
> > >
> > > In answer to your question about Java the following shows the
> > > version:
> > > java -version
> > > java version "1.8.0_212"
> > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
> > > HotSpot(TM)
> > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > >
> > > Regards my preference for the running mode, I would like to use
> > > the web UI. Is there a version requirement for Tomcat?
> > >
> > > He has installed MariaDB (myql for RHEL7) and is currently in
the
> > > process of installing R. I assume that once R is installed that
I
> > > can install the packages you mention below, correct?
> > >
> > > I'm not quite sure what METViewer modules are for answering your
> > > question about whether I want to build them or have you do it.
> > > Could
> > > you provide more explanation or point me to where I can read
more?
> > >
> > > R/
> > > John
> > >
> > >
> > >
> > > -----Original Message-----
> > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, July 18, 2019 11:02 AM
> > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > All active links contained in this email were disabled.  Please
> > > verify the identity of the sender, and confirm the authenticity
of
> > > all links contained within the message prior to copying and
> > > pasting the address to a Web browser.
> > >
> > >
> > >
> > >
> > > ----
> > >
> > > Hi John,
> > >  Are you planning to run METviewer using the batch mode only
(from
> > > the command  line with XML configuration) or with the web user
> > > interface option?
> > > If you
> > >  need UI you need to install Tomcat. With Tomcat only, you can
> > > access UI using  Caution-http://localhost:8080/metviewer. For
more
> > > advanced settings you need to use Apache/Tomcat configurations.
> > > You also need to install R packages from R console:
> > > install.packages('boot')
> > > install.packages('plotrix')
> > > install.packages('gsl')
> > > install.packages('data.table')
> > > install.packages('verification')
> > >
> > > I can build METviewer modules for you or you can do it by
yourself.
> > > In
> > > this case you need to install Ant. Let me know your preference.
> > > What is the version of Java you going to use?
> > >
> > > Tatiana
> > >
> > > Tatiana
> > >
> > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > I am starting the preps to have METViewer installed on my
local
> > > > linux workstation. I already have Java and need to have R and
> > > > MySQL installed. Anything else?
> > > >
> > > > R/
> > > > John
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED



CLASSIFICATION: UNCLASSIFIED
CLASSIFICATION: UNCLASSIFIED
CLASSIFICATION: UNCLASSIFIED

------------------------------------------------
Subject: Installing METviewer
From: Tatiana Burek
Time: Tue Aug 06 13:55:54 2019

On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil wrote:
> Tatiana -
>
> Today I was able to resume the loading of the R packages you
specified
> in an earlier email. There were issues encountered when loading
'gsl"
> and 'verification'. I'm not sure where to start debugging the
issues.
> I captured the screen dialog so you can see more specific info about
> them. See attached text file.
>
> The R packages which appear to have loaded successfully are:
> 'boot', 'plotrix', and 'data.table'
>
> What do you recommend for troubleshooting these issues?
>
> At this point, I believe that you have all the info you requested
> which was provided in earlier emails.
>
> Let me know if you need additional info to proceed.
>
> Thanks.
>
> R/
>  John
>
>
>
>
> ________________________________________
> From: Raby, John W CIV USARMY CCDC ARL (USA)
> Sent: Wednesday, July 31, 2019 11:45 AM
> To: met_help at ucar.edu
> Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer (UNCLASSIFIED)
>
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> I'm sorry about the delay in getting back to you with an update.
>
> My workstation is fully operational now. I have not had a chance to
> load the
> remaining R packages.
>
> In answer to the questions you asked me:
>
> - database host and port. By default it is localhost:3306. Will this
> apply to
> your server?
>         YES
> - database user name and password. This is for the user that would
> insert and
> retrieve date to/from database
>         ruser / whitesands
> - the path to Tomcat's webapp directory
>         /opt/tomcat7/webapp
> - the path where the R executables will be installed.
>         /home/jraby/R/R-3.6.1/bin/
> - path to Java. By default it is java. Will this apply to your
server?
>         /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> - path where the METViewer
> executables should be located.
>         /home/jraby/METViewer
>
> Let me know if you need other details.
>
> R/
> John
>
>
> -----Original Message-----
> From: Raby, John W CIV USARMY CCDC ARL (USA)
> Sent: Thursday, July 25, 2019 8:35 AM
> To: 'met_help at ucar.edu' <met_help at ucar.edu>
> Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
> (UNCLASSIFIED)
>
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> FYI, the issue with my workstation has been resolved and I should
> receive it
> back in my office today. I will load the remaining R packages which
> you listed
> in your earlier email. I'll have my system admin send you the info
you
> requested last week soon.
>
> R/
> John
>
> -----Original Message-----
> From: Raby, John W CIV USARMY CCDC ARL (USA)
> Sent: Friday, July 19, 2019 3:23 PM
> To: 'met_help at ucar.edu' <met_help at ucar.edu>
> Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
> (UNCLASSIFIED)
>
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> My system admin was able to change the permissions on the library
and
> all
> other directories in the install directory and I was able to load
the
> first R
> package successfully at:
> /home/jraby/R/R-3.6.1/library
>
> My system admin was working on obtaining the rest of the info you
> requested.
> Unfortunately, the workstation would not complete a reboot and
cannot
> be
> accessed now. He is looking into resolving that problem now. Not
sure
> whether
> the problem is connected with the installation of the new apps
> associated with
> getting the system provisioned for METViewer, but it is strangely
> coincident.
>
> I'll be back in touch on Monday to provide an update on the status.
>
> Have a great weekend!
>
> R/
> John
>
> -----Original Message-----
> From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> Sent: Friday, July 19, 2019 12:57 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> METviewer can work with personal libraries. Let me know the path and
I
> add it
> to build.
> Is it /home/jraby/R/R-3.6.1/library?
>
> Tatiana
>
> On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil wrote:
> > Tatiana -
> >
> > Thanks for the info and guidance.
> >
> > I tried loading the R packages with user permissions, but it can't
> > due
> > to an apparent permissions issue. See the following dialog:
> > > install.packages('boot')
> > Warning in install.packages("boot") :
> >   'lib = "/home/jraby/R/R-3.6.1/library"' is not writable Would
you
> > like to use a personal library instead? (yes/No/cancel)
> >
> > If I set up a "personal" library as they suggest, will METViewer
have
> > an issue?
> >
> > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> >
> > My system admin is working on getting answers to the remaining
> > questions.
> >
> > R/
> > John
> >
> >
> > ________________________________________
> > From: Tatiana Burek via RT [met_help at ucar.edu]
> > Sent: Friday, July 19, 2019 12:05 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > Hi John,
> > Were you able to install the additional R packages?
> > I can build and provide you .war file as well as other
executables.
> > For that, I need some parameters  to build these files:
> > - database host and port. By default it is localhost:3306. Will
this
> > apply to your server?
> > - database user name and password. This is for the user that would
> > insert and retrieve date to/from database
> > - the path to Rscript executable. By default it is just
Rscript.Will
> > this apply to your server?
> > - the path to Tomcat's webapp directory
> > - the path where the executables will be installed.
> > - path to Java. By default it is java. Will this apply to your
> > server?
> >
> > Tatiana
> >
> >
> > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > At this time, the system admin has the following installed on my
> > > workstation:
> > > MariaDB, Java, Tomcat, and R
> > >
> > > He says that a .war file is needed and that it must be placed in
a
> > > specific directory under Tomcat to allow the METViewer to
deploy.
> > >
> > > Based on this, what is the next step?
> > >
> > > Thanks.
> > >
> > > R/
> > > John
> > >
> > >
> > > -----Original Message-----
> > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, July 18, 2019 2:24 PM
> > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > - METviewer will work with any version of Tomcat starting from
> > > Tomcat6
> > > and
> > > ending with  Tomcat8.
> > > - You can install packages after R is installed.
> > > - METviewer supports MariaDB. We use this setup on one of our
> > > servers
> > > - By  modules I mean the load/batch portion of METviewer ( the
> > > command line interface ) and the web application.
> > >
> > > The batch/load module is basically a folder with scripts and
> > > executables. Web application comes as a .war file that can be
put
> > > under Tomcat.
> > > Ant build script requires some setting variables and builds both
> > > modules OR you would give me settings and I build modules for
you.
> > >
> > > Tatiana
> > >
> > >
> > > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil wrote:
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > My system admin has started the provisioning of my
workstation.
> > > >
> > > > In answer to your question about Java the following shows the
> > > > version:
> > > > java -version
> > > > java version "1.8.0_212"
> > > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
> > > > HotSpot(TM)
> > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > >
> > > > Regards my preference for the running mode, I would like to
use
> > > > the web UI. Is there a version requirement for Tomcat?
> > > >
> > > > He has installed MariaDB (myql for RHEL7) and is currently in
the
> > > > process of installing R. I assume that once R is installed
that I
> > > > can install the packages you mention below, correct?
> > > >
> > > > I'm not quite sure what METViewer modules are for answering
your
> > > > question about whether I want to build them or have you do it.
> > > > Could
> > > > you provide more explanation or point me to where I can read
> > > > more?
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > >
> > > > -----Original Message-----
> > > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > > METviewer
> > > >
> > > > All active links contained in this email were disabled.
Please
> > > > verify the identity of the sender, and confirm the
authenticity
> > > > of
> > > > all links contained within the message prior to copying and
> > > > pasting the address to a Web browser.
> > > >
> > > >
> > > >
> > > >
> > > > ----
> > > >
> > > > Hi John,
> > > >  Are you planning to run METviewer using the batch mode only
> > > > (from
> > > > the command  line with XML configuration) or with the web user
> > > > interface option?
> > > > If you
> > > >  need UI you need to install Tomcat. With Tomcat only, you can
> > > > access UI using  Caution-http://localhost:8080/metviewer. For
> > > > more
> > > > advanced settings you need to use Apache/Tomcat
configurations.
> > > > You also need to install R packages from R console:
> > > > install.packages('boot')
> > > > install.packages('plotrix')
> > > > install.packages('gsl')
> > > > install.packages('data.table')
> > > > install.packages('verification')
> > > >
> > > > I can build METviewer modules for you or you can do it by
> > > > yourself.
> > > > In
> > > > this case you need to install Ant. Let me know your
preference.
> > > > What is the version of Java you going to use?
> > > >
> > > > Tatiana
> > > >
> > > > Tatiana
> > > >
> > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > I am starting the preps to have METViewer installed on my
local
> > > > > linux workstation. I already have Java and need to have R
and
> > > > > MySQL installed. Anything else?
> > > > >
> > > > > R/
> > > > > John
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED
> CLASSIFICATION: UNCLASSIFIED
> CLASSIFICATION: UNCLASSIFIED



------------------------------------------------
Subject: Installing METviewer
From: Tatiana Burek
Time: Tue Aug 06 14:12:53 2019

John,

By default, R uses the /tmp directory to install packages. The /tmp
directory is often marked as “noexec”. This means that no file under
/tmp can ever be executed.
To solve this problem you need  to set the TMPDIR environment
variable:
For csh shell:
mkdir ~/tmp
setenv TMPDIR ~/tmp

for bash:
mkdir ~/tmp
export TMPDIR=~/tmp

gsl package is only needed for Eclv plot. If you are not planning to
create these plots you don't need to install this package.

Tatiana



On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil wrote:
> Tatiana -
>
> Today I was able to resume the loading of the R packages you
specified
> in an earlier email. There were issues encountered when loading
'gsl"
> and 'verification'. I'm not sure where to start debugging the
issues.
> I captured the screen dialog so you can see more specific info about
> them. See attached text file.
>
> The R packages which appear to have loaded successfully are:
> 'boot', 'plotrix', and 'data.table'
>
> What do you recommend for troubleshooting these issues?
>
> At this point, I believe that you have all the info you requested
> which was provided in earlier emails.
>
> Let me know if you need additional info to proceed.
>
> Thanks.
>
> R/
>  John
>
>
>
>
> ________________________________________
> From: Raby, John W CIV USARMY CCDC ARL (USA)
> Sent: Wednesday, July 31, 2019 11:45 AM
> To: met_help at ucar.edu
> Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer (UNCLASSIFIED)
>
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> I'm sorry about the delay in getting back to you with an update.
>
> My workstation is fully operational now. I have not had a chance to
> load the
> remaining R packages.
>
> In answer to the questions you asked me:
>
> - database host and port. By default it is localhost:3306. Will this
> apply to
> your server?
>         YES
> - database user name and password. This is for the user that would
> insert and
> retrieve date to/from database
>         ruser / whitesands
> - the path to Tomcat's webapp directory
>         /opt/tomcat7/webapp
> - the path where the R executables will be installed.
>         /home/jraby/R/R-3.6.1/bin/
> - path to Java. By default it is java. Will this apply to your
server?
>         /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> - path where the METViewer
> executables should be located.
>         /home/jraby/METViewer
>
> Let me know if you need other details.
>
> R/
> John
>
>
> -----Original Message-----
> From: Raby, John W CIV USARMY CCDC ARL (USA)
> Sent: Thursday, July 25, 2019 8:35 AM
> To: 'met_help at ucar.edu' <met_help at ucar.edu>
> Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
> (UNCLASSIFIED)
>
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> FYI, the issue with my workstation has been resolved and I should
> receive it
> back in my office today. I will load the remaining R packages which
> you listed
> in your earlier email. I'll have my system admin send you the info
you
> requested last week soon.
>
> R/
> John
>
> -----Original Message-----
> From: Raby, John W CIV USARMY CCDC ARL (USA)
> Sent: Friday, July 19, 2019 3:23 PM
> To: 'met_help at ucar.edu' <met_help at ucar.edu>
> Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
> (UNCLASSIFIED)
>
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> My system admin was able to change the permissions on the library
and
> all
> other directories in the install directory and I was able to load
the
> first R
> package successfully at:
> /home/jraby/R/R-3.6.1/library
>
> My system admin was working on obtaining the rest of the info you
> requested.
> Unfortunately, the workstation would not complete a reboot and
cannot
> be
> accessed now. He is looking into resolving that problem now. Not
sure
> whether
> the problem is connected with the installation of the new apps
> associated with
> getting the system provisioned for METViewer, but it is strangely
> coincident.
>
> I'll be back in touch on Monday to provide an update on the status.
>
> Have a great weekend!
>
> R/
> John
>
> -----Original Message-----
> From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> Sent: Friday, July 19, 2019 12:57 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> METviewer can work with personal libraries. Let me know the path and
I
> add it
> to build.
> Is it /home/jraby/R/R-3.6.1/library?
>
> Tatiana
>
> On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil wrote:
> > Tatiana -
> >
> > Thanks for the info and guidance.
> >
> > I tried loading the R packages with user permissions, but it can't
> > due
> > to an apparent permissions issue. See the following dialog:
> > > install.packages('boot')
> > Warning in install.packages("boot") :
> >   'lib = "/home/jraby/R/R-3.6.1/library"' is not writable Would
you
> > like to use a personal library instead? (yes/No/cancel)
> >
> > If I set up a "personal" library as they suggest, will METViewer
have
> > an issue?
> >
> > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> >
> > My system admin is working on getting answers to the remaining
> > questions.
> >
> > R/
> > John
> >
> >
> > ________________________________________
> > From: Tatiana Burek via RT [met_help at ucar.edu]
> > Sent: Friday, July 19, 2019 12:05 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > Hi John,
> > Were you able to install the additional R packages?
> > I can build and provide you .war file as well as other
executables.
> > For that, I need some parameters  to build these files:
> > - database host and port. By default it is localhost:3306. Will
this
> > apply to your server?
> > - database user name and password. This is for the user that would
> > insert and retrieve date to/from database
> > - the path to Rscript executable. By default it is just
Rscript.Will
> > this apply to your server?
> > - the path to Tomcat's webapp directory
> > - the path where the executables will be installed.
> > - path to Java. By default it is java. Will this apply to your
> > server?
> >
> > Tatiana
> >
> >
> > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > At this time, the system admin has the following installed on my
> > > workstation:
> > > MariaDB, Java, Tomcat, and R
> > >
> > > He says that a .war file is needed and that it must be placed in
a
> > > specific directory under Tomcat to allow the METViewer to
deploy.
> > >
> > > Based on this, what is the next step?
> > >
> > > Thanks.
> > >
> > > R/
> > > John
> > >
> > >
> > > -----Original Message-----
> > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, July 18, 2019 2:24 PM
> > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > - METviewer will work with any version of Tomcat starting from
> > > Tomcat6
> > > and
> > > ending with  Tomcat8.
> > > - You can install packages after R is installed.
> > > - METviewer supports MariaDB. We use this setup on one of our
> > > servers
> > > - By  modules I mean the load/batch portion of METviewer ( the
> > > command line interface ) and the web application.
> > >
> > > The batch/load module is basically a folder with scripts and
> > > executables. Web application comes as a .war file that can be
put
> > > under Tomcat.
> > > Ant build script requires some setting variables and builds both
> > > modules OR you would give me settings and I build modules for
you.
> > >
> > > Tatiana
> > >
> > >
> > > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil wrote:
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > My system admin has started the provisioning of my
workstation.
> > > >
> > > > In answer to your question about Java the following shows the
> > > > version:
> > > > java -version
> > > > java version "1.8.0_212"
> > > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
> > > > HotSpot(TM)
> > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > >
> > > > Regards my preference for the running mode, I would like to
use
> > > > the web UI. Is there a version requirement for Tomcat?
> > > >
> > > > He has installed MariaDB (myql for RHEL7) and is currently in
the
> > > > process of installing R. I assume that once R is installed
that I
> > > > can install the packages you mention below, correct?
> > > >
> > > > I'm not quite sure what METViewer modules are for answering
your
> > > > question about whether I want to build them or have you do it.
> > > > Could
> > > > you provide more explanation or point me to where I can read
> > > > more?
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > >
> > > > -----Original Message-----
> > > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > > METviewer
> > > >
> > > > All active links contained in this email were disabled.
Please
> > > > verify the identity of the sender, and confirm the
authenticity
> > > > of
> > > > all links contained within the message prior to copying and
> > > > pasting the address to a Web browser.
> > > >
> > > >
> > > >
> > > >
> > > > ----
> > > >
> > > > Hi John,
> > > >  Are you planning to run METviewer using the batch mode only
> > > > (from
> > > > the command  line with XML configuration) or with the web user
> > > > interface option?
> > > > If you
> > > >  need UI you need to install Tomcat. With Tomcat only, you can
> > > > access UI using  Caution-http://localhost:8080/metviewer. For
> > > > more
> > > > advanced settings you need to use Apache/Tomcat
configurations.
> > > > You also need to install R packages from R console:
> > > > install.packages('boot')
> > > > install.packages('plotrix')
> > > > install.packages('gsl')
> > > > install.packages('data.table')
> > > > install.packages('verification')
> > > >
> > > > I can build METviewer modules for you or you can do it by
> > > > yourself.
> > > > In
> > > > this case you need to install Ant. Let me know your
preference.
> > > > What is the version of Java you going to use?
> > > >
> > > > Tatiana
> > > >
> > > > Tatiana
> > > >
> > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > I am starting the preps to have METViewer installed on my
local
> > > > > linux workstation. I already have Java and need to have R
and
> > > > > MySQL installed. Anything else?
> > > > >
> > > > > R/
> > > > > John
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED
> CLASSIFICATION: UNCLASSIFIED
> CLASSIFICATION: UNCLASSIFIED



------------------------------------------------
Subject: Installing METviewer
From: Raby, John W USA CIV
Time: Tue Aug 06 14:42:39 2019

CLASSIFICATION: UNCLASSIFIED

Tatiana -

Thanks for your guidance on resolving the issues. I will consult with
my sysadm and get back to you soon.

Regards the gsl package, I read about the eclv plot and I don't have
an interest at the present time. Was the loading of the gsl package
supposed to do an install of the gsl? I have installed gsl as part of
the provisioning required prior to installing MET V5.2 on the HPC. If
I was able to do that on my workstation and was successful, would that
alleviate the problem and allow the package to be installed?

R/
John



-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Tuesday, August 6, 2019 2:13 PM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

John,

By default, R uses the /tmp directory to install packages. The /tmp
directory is often marked as “noexec”. This means that no file under
/tmp can ever be executed.
To solve this problem you need  to set the TMPDIR environment
variable:
For csh shell:
mkdir ~/tmp
setenv TMPDIR ~/tmp

for bash:
mkdir ~/tmp
export TMPDIR=~/tmp

gsl package is only needed for Eclv plot. If you are not planning to
create these plots you don't need to install this package.

Tatiana



On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil wrote:
> Tatiana -
>
> Today I was able to resume the loading of the R packages you
specified
> in an earlier email. There were issues encountered when loading
'gsl"
> and 'verification'. I'm not sure where to start debugging the
issues.
> I captured the screen dialog so you can see more specific info about
> them. See attached text file.
>
> The R packages which appear to have loaded successfully are:
> 'boot', 'plotrix', and 'data.table'
>
> What do you recommend for troubleshooting these issues?
>
> At this point, I believe that you have all the info you requested
> which was provided in earlier emails.
>
> Let me know if you need additional info to proceed.
>
> Thanks.
>
> R/
>  John
>
>
>
>
> ________________________________________
> From: Raby, John W CIV USARMY CCDC ARL (USA)
> Sent: Wednesday, July 31, 2019 11:45 AM
> To: met_help at ucar.edu
> Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer (UNCLASSIFIED)
>
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> I'm sorry about the delay in getting back to you with an update.
>
> My workstation is fully operational now. I have not had a chance to
> load the remaining R packages.
>
> In answer to the questions you asked me:
>
> - database host and port. By default it is localhost:3306. Will this
> apply to your server?
>         YES
> - database user name and password. This is for the user that would
> insert and retrieve date to/from database
>         ruser / whitesands
> - the path to Tomcat's webapp directory
>         /opt/tomcat7/webapp
> - the path where the R executables will be installed.
>         /home/jraby/R/R-3.6.1/bin/
> - path to Java. By default it is java. Will this apply to your
server?
>         /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> - path where the METViewer
> executables should be located.
>         /home/jraby/METViewer
>
> Let me know if you need other details.
>
> R/
> John
>
>
> -----Original Message-----
> From: Raby, John W CIV USARMY CCDC ARL (USA)
> Sent: Thursday, July 25, 2019 8:35 AM
> To: 'met_help at ucar.edu' <met_help at ucar.edu>
> Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
> (UNCLASSIFIED)
>
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> FYI, the issue with my workstation has been resolved and I should
> receive it back in my office today. I will load the remaining R
> packages which you listed in your earlier email. I'll have my system
> admin send you the info you requested last week soon.
>
> R/
> John
>
> -----Original Message-----
> From: Raby, John W CIV USARMY CCDC ARL (USA)
> Sent: Friday, July 19, 2019 3:23 PM
> To: 'met_help at ucar.edu' <met_help at ucar.edu>
> Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
> (UNCLASSIFIED)
>
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> My system admin was able to change the permissions on the library
and
> all other directories in the install directory and I was able to
load
> the first R package successfully at:
> /home/jraby/R/R-3.6.1/library
>
> My system admin was working on obtaining the rest of the info you
> requested.
> Unfortunately, the workstation would not complete a reboot and
cannot
> be accessed now. He is looking into resolving that problem now. Not
> sure whether the problem is connected with the installation of the
new
> apps associated with getting the system provisioned for METViewer,
but
> it is strangely coincident.
>
> I'll be back in touch on Monday to provide an update on the status.
>
> Have a great weekend!
>
> R/
> John
>
> -----Original Message-----
> From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> Sent: Friday, July 19, 2019 12:57 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> METviewer can work with personal libraries. Let me know the path and
I
> add it to build.
> Is it /home/jraby/R/R-3.6.1/library?
>
> Tatiana
>
> On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil wrote:
> > Tatiana -
> >
> > Thanks for the info and guidance.
> >
> > I tried loading the R packages with user permissions, but it can't
> > due to an apparent permissions issue. See the following dialog:
> > > install.packages('boot')
> > Warning in install.packages("boot") :
> >   'lib = "/home/jraby/R/R-3.6.1/library"' is not writable Would
you
> > like to use a personal library instead? (yes/No/cancel)
> >
> > If I set up a "personal" library as they suggest, will METViewer
> > have an issue?
> >
> > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> >
> > My system admin is working on getting answers to the remaining
> > questions.
> >
> > R/
> > John
> >
> >
> > ________________________________________
> > From: Tatiana Burek via RT [met_help at ucar.edu]
> > Sent: Friday, July 19, 2019 12:05 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > Hi John,
> > Were you able to install the additional R packages?
> > I can build and provide you .war file as well as other
executables.
> > For that, I need some parameters  to build these files:
> > - database host and port. By default it is localhost:3306. Will
this
> > apply to your server?
> > - database user name and password. This is for the user that would
> > insert and retrieve date to/from database
> > - the path to Rscript executable. By default it is just
Rscript.Will
> > this apply to your server?
> > - the path to Tomcat's webapp directory
> > - the path where the executables will be installed.
> > - path to Java. By default it is java. Will this apply to your
> > server?
> >
> > Tatiana
> >
> >
> > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > At this time, the system admin has the following installed on my
> > > workstation:
> > > MariaDB, Java, Tomcat, and R
> > >
> > > He says that a .war file is needed and that it must be placed in
a
> > > specific directory under Tomcat to allow the METViewer to
deploy.
> > >
> > > Based on this, what is the next step?
> > >
> > > Thanks.
> > >
> > > R/
> > > John
> > >
> > >
> > > -----Original Message-----
> > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, July 18, 2019 2:24 PM
> > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > - METviewer will work with any version of Tomcat starting from
> > > Tomcat6
> > > and
> > > ending with  Tomcat8.
> > > - You can install packages after R is installed.
> > > - METviewer supports MariaDB. We use this setup on one of our
> > > servers
> > > - By  modules I mean the load/batch portion of METviewer ( the
> > > command line interface ) and the web application.
> > >
> > > The batch/load module is basically a folder with scripts and
> > > executables. Web application comes as a .war file that can be
put
> > > under Tomcat.
> > > Ant build script requires some setting variables and builds both
> > > modules OR you would give me settings and I build modules for
you.
> > >
> > > Tatiana
> > >
> > >
> > > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil wrote:
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > My system admin has started the provisioning of my
workstation.
> > > >
> > > > In answer to your question about Java the following shows the
> > > > version:
> > > > java -version
> > > > java version "1.8.0_212"
> > > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
> > > > HotSpot(TM)
> > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > >
> > > > Regards my preference for the running mode, I would like to
use
> > > > the web UI. Is there a version requirement for Tomcat?
> > > >
> > > > He has installed MariaDB (myql for RHEL7) and is currently in
> > > > the process of installing R. I assume that once R is installed
> > > > that I can install the packages you mention below, correct?
> > > >
> > > > I'm not quite sure what METViewer modules are for answering
your
> > > > question about whether I want to build them or have you do it.
> > > > Could
> > > > you provide more explanation or point me to where I can read
> > > > more?
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > >
> > > > -----Original Message-----
> > > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > > METviewer
> > > >
> > > > All active links contained in this email were disabled.
Please
> > > > verify the identity of the sender, and confirm the
authenticity
> > > > of all links contained within the message prior to copying and
> > > > pasting the address to a Web browser.
> > > >
> > > >
> > > >
> > > >
> > > > ----
> > > >
> > > > Hi John,
> > > >  Are you planning to run METviewer using the batch mode only
> > > > (from the command  line with XML configuration) or with the
web
> > > > user interface option?
> > > > If you
> > > >  need UI you need to install Tomcat. With Tomcat only, you can
> > > > access UI using  Caution-http://localhost:8080/metviewer. For
> > > > more advanced settings you need to use Apache/Tomcat
> > > > configurations.
> > > > You also need to install R packages from R console:
> > > > install.packages('boot')
> > > > install.packages('plotrix')
> > > > install.packages('gsl')
> > > > install.packages('data.table')
> > > > install.packages('verification')
> > > >
> > > > I can build METviewer modules for you or you can do it by
> > > > yourself.
> > > > In
> > > > this case you need to install Ant. Let me know your
preference.
> > > > What is the version of Java you going to use?
> > > >
> > > > Tatiana
> > > >
> > > > Tatiana
> > > >
> > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > I am starting the preps to have METViewer installed on my
> > > > > local linux workstation. I already have Java and need to
have
> > > > > R and MySQL installed. Anything else?
> > > > >
> > > > > R/
> > > > > John
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED
> CLASSIFICATION: UNCLASSIFIED
> CLASSIFICATION: UNCLASSIFIED



CLASSIFICATION: UNCLASSIFIED

------------------------------------------------
Subject: Installing METviewer
From: Tatiana Burek
Time: Tue Aug 06 14:49:34 2019

gsl and "R package gsl" are different libraries and are needed to be
installed separately.
I'm not sure that  there is a dependency between of them but if there
is than R gsl would depend on the standard gsl.

Tatiana

On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> Thanks for your guidance on resolving the issues. I will consult
with
> my sysadm and get back to you soon.
>
> Regards the gsl package, I read about the eclv plot and I don't have
> an interest at the present time. Was the loading of the gsl package
> supposed to do an install of the gsl? I have installed gsl as part
of
> the provisioning required prior to installing MET V5.2 on the HPC.
If
> I was able to do that on my workstation and was successful, would
that
> alleviate the problem and allow the package to be installed?
>
> R/
> John
>
>
>
> -----Original Message-----
>  From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> Sent: Tuesday, August 6, 2019 2:13 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> John,
>
> By default, R uses the /tmp directory to install packages. The /tmp
> directory is often marked as “noexec”. This means that no file under
> /tmp can ever be executed.
> To solve this problem you need  to set the TMPDIR environment
> variable:
> For csh shell:
> mkdir ~/tmp
> setenv TMPDIR ~/tmp
>
> for bash:
> mkdir ~/tmp
> export TMPDIR=~/tmp
>
> gsl package is only needed for Eclv plot. If you are not planning to
> create these plots you don't need to install this package.
>
> Tatiana
>
>
>
> On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil wrote:
> > Tatiana -
> >
> > Today I was able to resume the loading of the R packages you
> > specified
> > in an earlier email. There were issues encountered when loading
'gsl"
> > and 'verification'. I'm not sure where to start debugging the
issues.
> > I captured the screen dialog so you can see more specific info
about
> > them. See attached text file.
> >
> > The R packages which appear to have loaded successfully are:
> > 'boot', 'plotrix', and 'data.table'
> >
> > What do you recommend for troubleshooting these issues?
> >
> > At this point, I believe that you have all the info you requested
> > which was provided in earlier emails.
> >
> > Let me know if you need additional info to proceed.
> >
> > Thanks.
> >
> > R/
> >  John
> >
> >
> >
> >
> > ________________________________________
> > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > Sent: Wednesday, July 31, 2019 11:45 AM
> > To: met_help at ucar.edu
> >  Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer (UNCLASSIFIED)
> >
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > I'm sorry about the delay in getting back to you with an update.
> >
> > My workstation is fully operational now. I have not had a chance
to
> > load the remaining R packages.
> >
> > In answer to the questions you asked me:
> >
> > - database host and port. By default it is localhost:3306. Will
this
> > apply to your server?
> >        YES
> > - database user name and password. This is for the user that would
> > insert and retrieve date to/from database
> >        ruser / whitesands
> > - the path to Tomcat's webapp directory
> >        /opt/tomcat7/webapp
> > - the path where the R executables will be installed.
> >        /home/jraby/R/R-3.6.1/bin/
> > - path to Java. By default it is java. Will this apply to your
> > server?
> >        /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > - path where the METViewer
> > executables should be located.
> >        /home/jraby/METViewer
> >
> > Let me know if you need other details.
> >
> > R/
> > John
> >
> >
> > -----Original Message-----
> > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > Sent: Thursday, July 25, 2019 8:35 AM
> > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> >  Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> > (UNCLASSIFIED)
> >
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > FYI, the issue with my workstation has been resolved and I should
> > receive it back in my office today. I will load the remaining R
> > packages which you listed in your earlier email. I'll have my
system
> > admin send you the info you requested last week soon.
> >
> > R/
> > John
> >
> > -----Original Message-----
> > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > Sent: Friday, July 19, 2019 3:23 PM
> > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> >  Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> > (UNCLASSIFIED)
> >
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > My system admin was able to change the permissions on the library
and
> > all other directories in the install directory and I was able to
load
> > the first R package successfully at:
> > /home/jraby/R/R-3.6.1/library
> >
> > My system admin was working on obtaining the rest of the info you
> > requested.
> > Unfortunately, the workstation would not complete a reboot and
cannot
> > be accessed now. He is looking into resolving that problem now.
Not
> > sure whether the problem is connected with the installation of the
> > new
> > apps associated with getting the system provisioned for METViewer,
> > but
> > it is strangely coincident.
> >
> > I'll be back in touch on Monday to provide an update on the
status.
> >
> > Have a great weekend!
> >
> > R/
> > John
> >
> > -----Original Message-----
> > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > Sent: Friday, July 19, 2019 12:57 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > METviewer can work with personal libraries. Let me know the path
and
> > I
> > add it to build.
> > Is it /home/jraby/R/R-3.6.1/library?
> >
> > Tatiana
> >
> > On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil wrote:
> > > Tatiana -
> > >
> > > Thanks for the info and guidance.
> > >
> > > I tried loading the R packages with user permissions, but it
can't
> > > due to an apparent permissions issue. See the following dialog:
> > > > install.packages('boot')
> > > Warning in install.packages("boot") :
> > >    'lib = "/home/jraby/R/R-3.6.1/library"' is not writable Would
> > > you
> > > like to use a personal library instead? (yes/No/cancel)
> > >
> > > If I set up a "personal" library as they suggest, will METViewer
> > > have an issue?
> > >
> > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > >
> > > My system admin is working on getting answers to the remaining
> > > questions.
> > >
> > > R/
> > > John
> > >
> > >
> > > ________________________________________
> > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > Sent: Friday, July 19, 2019 12:05 PM
> > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > Hi John,
> > > Were you able to install the additional R packages?
> > > I can build and provide you .war file as well as other
executables.
> > > For that, I need some parameters  to build these files:
> > >  - database host and port. By default it is localhost:3306. Will
> > > this
> > > apply to your server?
> > >  - database user name and password. This is for the user that
would
> > > insert and retrieve date to/from database
> > >  - the path to Rscript executable. By default it is just
> > > Rscript.Will
> > > this apply to your server?
> > > - the path to Tomcat's webapp directory
> > > - the path where the executables will be installed.
> > >  - path to Java. By default it is java. Will this apply to your
> > > server?
> > >
> > > Tatiana
> > >
> > >
> > > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil wrote:
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > At this time, the system admin has the following installed on
my
> > > > workstation:
> > > > MariaDB, Java, Tomcat, and R
> > > >
> > > > He says that a .war file is needed and that it must be placed
in
> > > > a
> > > > specific directory under Tomcat to allow the METViewer to
deploy.
> > > >
> > > > Based on this, what is the next step?
> > > >
> > > > Thanks.
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > > -----Original Message-----
> > > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > > METviewer
> > > >
> > > > - METviewer will work with any version of Tomcat starting from
> > > > Tomcat6
> > > > and
> > > > ending with  Tomcat8.
> > > > - You can install packages after R is installed.
> > > >  - METviewer supports MariaDB. We use this setup on one of our
> > > > servers
> > > >  - By  modules I mean the load/batch portion of METviewer (
the
> > > > command line interface ) and the web application.
> > > >
> > > > The batch/load module is basically a folder with scripts and
> > > > executables. Web application comes as a .war file that can be
put
> > > > under Tomcat.
> > > > Ant build script requires some setting variables and builds
both
> > > > modules OR you would give me settings and I build modules for
> > > > you.
> > > >
> > > > Tatiana
> > > >
> > > >
> > > > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > My system admin has started the provisioning of my
workstation.
> > > > >
> > > > > In answer to your question about Java the following shows
the
> > > > > version:
> > > > > java -version
> > > > > java version "1.8.0_212"
> > > > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
> > > > > HotSpot(TM)
> > > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > > >
> > > > > Regards my preference for the running mode, I would like to
use
> > > > > the web UI. Is there a version requirement for Tomcat?
> > > > >
> > > > > He has installed MariaDB (myql for RHEL7) and is currently
in
> > > > > the process of installing R. I assume that once R is
installed
> > > > > that I can install the packages you mention below, correct?
> > > > >
> > > > > I'm not quite sure what METViewer modules are for answering
> > > > > your
> > > > > question about whether I want to build them or have you do
it.
> > > > > Could
> > > > > you provide more explanation or point me to where I can read
> > > > > more?
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > >
> > > > >
> > > > > -----Original Message-----
> > > > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > > METviewer
> > > > >
> > > > > All active links contained in this email were disabled.
Please
> > > > > verify the identity of the sender, and confirm the
authenticity
> > > > > of all links contained within the message prior to copying
and
> > > > > pasting the address to a Web browser.
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > ----
> > > > >
> > > > > Hi John,
> > > > >   Are you planning to run METviewer using the batch mode
only
> > > > >  (from the command  line with XML configuration) or with the
> > > > > web
> > > > > user interface option?
> > > > > If you
> > > > >   need UI you need to install Tomcat. With Tomcat only, you
can
> > > > >  access UI using  Caution-http://localhost:8080/metviewer.
For
> > > > >  more advanced settings you need to use Apache/Tomcat
> > > > > configurations.
> > > > > You also need to install R packages from R console:
> > > > > install.packages('boot')
> > > > > install.packages('plotrix')
> > > > > install.packages('gsl')
> > > > > install.packages('data.table')
> > > > > install.packages('verification')
> > > > >
> > > > > I can build METviewer modules for you or you can do it by
> > > > > yourself.
> > > > > In
> > > > > this case you need to install Ant. Let me know your
preference.
> > > > > What is the version of Java you going to use?
> > > > >
> > > > > Tatiana
> > > > >
> > > > > Tatiana
> > > > >
> > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > I am starting the preps to have METViewer installed on my
> > > > > > local linux workstation. I already have Java and need to
have
> > > > > > R and MySQL installed. Anything else?
> > > > > >
> > > > > > R/
> > > > > > John
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
> > CLASSIFICATION: UNCLASSIFIED
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



------------------------------------------------
Subject: Installing METviewer
From: Raby, John W USA CIV
Time: Tue Aug 06 15:00:25 2019

CLASSIFICATION: UNCLASSIFIED

So, gsl itself is not required in order to have a successful install
of the R package gsl, correct?

R/
John

-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Tuesday, August 6, 2019 2:50 PM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

gsl and "R package gsl" are different libraries and are needed to be
installed separately.
I'm not sure that  there is a dependency between of them but if there
is than R gsl would depend on the standard gsl.

Tatiana

On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> Thanks for your guidance on resolving the issues. I will consult
with
> my sysadm and get back to you soon.
>
> Regards the gsl package, I read about the eclv plot and I don't have
> an interest at the present time. Was the loading of the gsl package
> supposed to do an install of the gsl? I have installed gsl as part
of
> the provisioning required prior to installing MET V5.2 on the HPC.
If
> I was able to do that on my workstation and was successful, would
that
> alleviate the problem and allow the package to be installed?
>
> R/
> John
>
>
>
> -----Original Message-----
>  From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> Sent: Tuesday, August 6, 2019 2:13 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> John,
>
> By default, R uses the /tmp directory to install packages. The /tmp
> directory is often marked as “noexec”. This means that no file under
> /tmp can ever be executed.
> To solve this problem you need  to set the TMPDIR environment
> variable:
> For csh shell:
> mkdir ~/tmp
> setenv TMPDIR ~/tmp
>
> for bash:
> mkdir ~/tmp
> export TMPDIR=~/tmp
>
> gsl package is only needed for Eclv plot. If you are not planning to
> create these plots you don't need to install this package.
>
> Tatiana
>
>
>
> On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil wrote:
> > Tatiana -
> >
> > Today I was able to resume the loading of the R packages you
> > specified in an earlier email. There were issues encountered when
> > loading 'gsl"
> > and 'verification'. I'm not sure where to start debugging the
issues.
> > I captured the screen dialog so you can see more specific info
about
> > them. See attached text file.
> >
> > The R packages which appear to have loaded successfully are:
> > 'boot', 'plotrix', and 'data.table'
> >
> > What do you recommend for troubleshooting these issues?
> >
> > At this point, I believe that you have all the info you requested
> > which was provided in earlier emails.
> >
> > Let me know if you need additional info to proceed.
> >
> > Thanks.
> >
> > R/
> >  John
> >
> >
> >
> >
> > ________________________________________
> > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > Sent: Wednesday, July 31, 2019 11:45 AM
> > To: met_help at ucar.edu
> >  Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer (UNCLASSIFIED)
> >
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > I'm sorry about the delay in getting back to you with an update.
> >
> > My workstation is fully operational now. I have not had a chance
to
> > load the remaining R packages.
> >
> > In answer to the questions you asked me:
> >
> > - database host and port. By default it is localhost:3306. Will
this
> > apply to your server?
> >        YES
> > - database user name and password. This is for the user that would
> > insert and retrieve date to/from database
> >        ruser / whitesands
> > - the path to Tomcat's webapp directory
> >        /opt/tomcat7/webapp
> > - the path where the R executables will be installed.
> >        /home/jraby/R/R-3.6.1/bin/
> > - path to Java. By default it is java. Will this apply to your
> > server?
> >        /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > - path where the METViewer
> > executables should be located.
> >        /home/jraby/METViewer
> >
> > Let me know if you need other details.
> >
> > R/
> > John
> >
> >
> > -----Original Message-----
> > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > Sent: Thursday, July 25, 2019 8:35 AM
> > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> >  Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> > (UNCLASSIFIED)
> >
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > FYI, the issue with my workstation has been resolved and I should
> > receive it back in my office today. I will load the remaining R
> > packages which you listed in your earlier email. I'll have my
system
> > admin send you the info you requested last week soon.
> >
> > R/
> > John
> >
> > -----Original Message-----
> > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > Sent: Friday, July 19, 2019 3:23 PM
> > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> >  Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> > (UNCLASSIFIED)
> >
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > My system admin was able to change the permissions on the library
> > and all other directories in the install directory and I was able
to
> > load the first R package successfully at:
> > /home/jraby/R/R-3.6.1/library
> >
> > My system admin was working on obtaining the rest of the info you
> > requested.
> > Unfortunately, the workstation would not complete a reboot and
> > cannot be accessed now. He is looking into resolving that problem
> > now. Not sure whether the problem is connected with the
installation
> > of the new apps associated with getting the system provisioned for
> > METViewer, but it is strangely coincident.
> >
> > I'll be back in touch on Monday to provide an update on the
status.
> >
> > Have a great weekend!
> >
> > R/
> > John
> >
> > -----Original Message-----
> > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > Sent: Friday, July 19, 2019 12:57 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > METviewer can work with personal libraries. Let me know the path
and
> > I add it to build.
> > Is it /home/jraby/R/R-3.6.1/library?
> >
> > Tatiana
> >
> > On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil wrote:
> > > Tatiana -
> > >
> > > Thanks for the info and guidance.
> > >
> > > I tried loading the R packages with user permissions, but it
can't
> > > due to an apparent permissions issue. See the following dialog:
> > > > install.packages('boot')
> > > Warning in install.packages("boot") :
> > >    'lib = "/home/jraby/R/R-3.6.1/library"' is not writable Would
> > > you like to use a personal library instead? (yes/No/cancel)
> > >
> > > If I set up a "personal" library as they suggest, will METViewer
> > > have an issue?
> > >
> > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > >
> > > My system admin is working on getting answers to the remaining
> > > questions.
> > >
> > > R/
> > > John
> > >
> > >
> > > ________________________________________
> > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > Sent: Friday, July 19, 2019 12:05 PM
> > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > Hi John,
> > > Were you able to install the additional R packages?
> > > I can build and provide you .war file as well as other
executables.
> > > For that, I need some parameters  to build these files:
> > >  - database host and port. By default it is localhost:3306. Will
> > > this apply to your server?
> > >  - database user name and password. This is for the user that
> > > would insert and retrieve date to/from database
> > >  - the path to Rscript executable. By default it is just
> > > Rscript.Will this apply to your server?
> > > - the path to Tomcat's webapp directory
> > > - the path where the executables will be installed.
> > >  - path to Java. By default it is java. Will this apply to your
> > > server?
> > >
> > > Tatiana
> > >
> > >
> > > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil wrote:
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > At this time, the system admin has the following installed on
my
> > > > workstation:
> > > > MariaDB, Java, Tomcat, and R
> > > >
> > > > He says that a .war file is needed and that it must be placed
in
> > > > a specific directory under Tomcat to allow the METViewer to
> > > > deploy.
> > > >
> > > > Based on this, what is the next step?
> > > >
> > > > Thanks.
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > > -----Original Message-----
> > > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > > METviewer
> > > >
> > > > - METviewer will work with any version of Tomcat starting from
> > > > Tomcat6
> > > > and
> > > > ending with  Tomcat8.
> > > > - You can install packages after R is installed.
> > > >  - METviewer supports MariaDB. We use this setup on one of our
> > > > servers
> > > >  - By  modules I mean the load/batch portion of METviewer (
the
> > > > command line interface ) and the web application.
> > > >
> > > > The batch/load module is basically a folder with scripts and
> > > > executables. Web application comes as a .war file that can be
> > > > put under Tomcat.
> > > > Ant build script requires some setting variables and builds
both
> > > > modules OR you would give me settings and I build modules for
> > > > you.
> > > >
> > > > Tatiana
> > > >
> > > >
> > > > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > My system admin has started the provisioning of my
workstation.
> > > > >
> > > > > In answer to your question about Java the following shows
the
> > > > > version:
> > > > > java -version
> > > > > java version "1.8.0_212"
> > > > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
> > > > > HotSpot(TM)
> > > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > > >
> > > > > Regards my preference for the running mode, I would like to
> > > > > use the web UI. Is there a version requirement for Tomcat?
> > > > >
> > > > > He has installed MariaDB (myql for RHEL7) and is currently
in
> > > > > the process of installing R. I assume that once R is
installed
> > > > > that I can install the packages you mention below, correct?
> > > > >
> > > > > I'm not quite sure what METViewer modules are for answering
> > > > > your question about whether I want to build them or have you
> > > > > do it.
> > > > > Could
> > > > > you provide more explanation or point me to where I can read
> > > > > more?
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > >
> > > > >
> > > > > -----Original Message-----
> > > > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > > METviewer
> > > > >
> > > > > All active links contained in this email were disabled.
> > > > > Please verify the identity of the sender, and confirm the
> > > > > authenticity of all links contained within the message prior
> > > > > to copying and pasting the address to a Web browser.
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > ----
> > > > >
> > > > > Hi John,
> > > > >   Are you planning to run METviewer using the batch mode
only
> > > > > (from the command  line with XML configuration) or with the
> > > > > web user interface option?
> > > > > If you
> > > > >   need UI you need to install Tomcat. With Tomcat only, you
> > > > > can  access UI using  Caution-
http://localhost:8080/metviewer.
> > > > > For  more advanced settings you need to use Apache/Tomcat
> > > > > configurations.
> > > > > You also need to install R packages from R console:
> > > > > install.packages('boot')
> > > > > install.packages('plotrix')
> > > > > install.packages('gsl')
> > > > > install.packages('data.table')
> > > > > install.packages('verification')
> > > > >
> > > > > I can build METviewer modules for you or you can do it by
> > > > > yourself.
> > > > > In
> > > > > this case you need to install Ant. Let me know your
preference.
> > > > > What is the version of Java you going to use?
> > > > >
> > > > > Tatiana
> > > > >
> > > > > Tatiana
> > > > >
> > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > I am starting the preps to have METViewer installed on my
> > > > > > local linux workstation. I already have Java and need to
> > > > > > have R and MySQL installed. Anything else?
> > > > > >
> > > > > > R/
> > > > > > John
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
> > CLASSIFICATION: UNCLASSIFIED
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



CLASSIFICATION: UNCLASSIFIED

------------------------------------------------
Subject: Installing METviewer
From: Tatiana Burek
Time: Tue Aug 06 15:16:36 2019

I checked R gsl dependencies and it does require gsl-devel
To install gsl-devel you (or your sys admin)  need to run
yum install gsl-devel

Tatiana

On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> So, gsl itself is not required in order to have a successful install
> of the R package gsl, correct?
>
> R/
> John
>
> -----Original Message-----
>  From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> Sent: Tuesday, August 6, 2019 2:50 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> gsl and "R package gsl" are different libraries and are needed to be
> installed separately.
> I'm not sure that  there is a dependency between of them but if
there
> is than R gsl would depend on the standard gsl.
>
> Tatiana
>
> On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > Thanks for your guidance on resolving the issues. I will consult
with
> > my sysadm and get back to you soon.
> >
> > Regards the gsl package, I read about the eclv plot and I don't
have
> > an interest at the present time. Was the loading of the gsl
package
> > supposed to do an install of the gsl? I have installed gsl as part
of
> > the provisioning required prior to installing MET V5.2 on the HPC.
If
> > I was able to do that on my workstation and was successful, would
> > that
> > alleviate the problem and allow the package to be installed?
> >
> > R/
> > John
> >
> >
> >
> > -----Original Message-----
> >  From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > Sent: Tuesday, August 6, 2019 2:13 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > John,
> >
> > By default, R uses the /tmp directory to install packages. The
/tmp
> > directory is often marked as “noexec”. This means that no file
under
> > /tmp can ever be executed.
> > To solve this problem you need  to set the TMPDIR environment
> > variable:
> > For csh shell:
> > mkdir ~/tmp
> > setenv TMPDIR ~/tmp
> >
> > for bash:
> > mkdir ~/tmp
> > export TMPDIR=~/tmp
> >
> > gsl package is only needed for Eclv plot. If you are not planning
to
> > create these plots you don't need to install this package.
> >
> > Tatiana
> >
> >
> >
> > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil wrote:
> > > Tatiana -
> > >
> > > Today I was able to resume the loading of the R packages you
> > > specified in an earlier email. There were issues encountered
when
> > > loading 'gsl"
> > > and 'verification'. I'm not sure where to start debugging the
> > > issues.
> > > I captured the screen dialog so you can see more specific info
> > > about
> > > them. See attached text file.
> > >
> > > The R packages which appear to have loaded successfully are:
> > > 'boot', 'plotrix', and 'data.table'
> > >
> > > What do you recommend for troubleshooting these issues?
> > >
> > > At this point, I believe that you have all the info you
requested
> > > which was provided in earlier emails.
> > >
> > > Let me know if you need additional info to proceed.
> > >
> > > Thanks.
> > >
> > > R/
> > >  John
> > >
> > >
> > >
> > >
> > > ________________________________________
> > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > To: met_help at ucar.edu
> > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > METviewer (UNCLASSIFIED)
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > I'm sorry about the delay in getting back to you with an update.
> > >
> > > My workstation is fully operational now. I have not had a chance
to
> > > load the remaining R packages.
> > >
> > > In answer to the questions you asked me:
> > >
> > > - database host and port. By default it is localhost:3306. Will
> > > this
> > > apply to your server?
> > >       YES
> > > - database user name and password. This is for the user that
would
> > > insert and retrieve date to/from database
> > >       ruser / whitesands
> > > - the path to Tomcat's webapp directory
> > >       /opt/tomcat7/webapp
> > > - the path where the R executables will be installed.
> > >       /home/jraby/R/R-3.6.1/bin/
> > > - path to Java. By default it is java. Will this apply to your
> > > server?
> > >       /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > - path where the METViewer
> > > executables should be located.
> > >       /home/jraby/METViewer
> > >
> > > Let me know if you need other details.
> > >
> > > R/
> > > John
> > >
> > >
> > > -----Original Message-----
> > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > Sent: Thursday, July 25, 2019 8:35 AM
> > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > METviewer
> > > (UNCLASSIFIED)
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > FYI, the issue with my workstation has been resolved and I
should
> > > receive it back in my office today. I will load the remaining R
> > > packages which you listed in your earlier email. I'll have my
> > > system
> > > admin send you the info you requested last week soon.
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > Sent: Friday, July 19, 2019 3:23 PM
> > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > METviewer
> > > (UNCLASSIFIED)
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > My system admin was able to change the permissions on the
library
> > > and all other directories in the install directory and I was
able
> > > to
> > > load the first R package successfully at:
> > > /home/jraby/R/R-3.6.1/library
> > >
> > > My system admin was working on obtaining the rest of the info
you
> > > requested.
> > > Unfortunately, the workstation would not complete a reboot and
> > > cannot be accessed now. He is looking into resolving that
problem
> > > now. Not sure whether the problem is connected with the
> > > installation
> > > of the new apps associated with getting the system provisioned
for
> > > METViewer, but it is strangely coincident.
> > >
> > > I'll be back in touch on Monday to provide an update on the
status.
> > >
> > > Have a great weekend!
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > Sent: Friday, July 19, 2019 12:57 PM
> > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > METviewer can work with personal libraries. Let me know the path
> > > and
> > > I add it to build.
> > > Is it /home/jraby/R/R-3.6.1/library?
> > >
> > > Tatiana
> > >
> > > On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil wrote:
> > > > Tatiana -
> > > >
> > > > Thanks for the info and guidance.
> > > >
> > > > I tried loading the R packages with user permissions, but it
> > > > can't
> > > > due to an apparent permissions issue. See the following
dialog:
> > > > > install.packages('boot')
> > > > Warning in install.packages("boot") :
> > > >     'lib = "/home/jraby/R/R-3.6.1/library"' is not writable
Would
> > > > you like to use a personal library instead? (yes/No/cancel)
> > > >
> > > > If I set up a "personal" library as they suggest, will
METViewer
> > > > have an issue?
> > > >
> > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > >
> > > > My system admin is working on getting answers to the remaining
> > > > questions.
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > > ________________________________________
> > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > Hi John,
> > > > Were you able to install the additional R packages?
> > > > I can build and provide you .war file as well as other
> > > > executables.
> > > > For that, I need some parameters  to build these files:
> > > >   - database host and port. By default it is localhost:3306.
Will
> > > > this apply to your server?
> > > >   - database user name and password. This is for the user that
> > > > would insert and retrieve date to/from database
> > > >   - the path to Rscript executable. By default it is just
> > > > Rscript.Will this apply to your server?
> > > > - the path to Tomcat's webapp directory
> > > > - the path where the executables will be installed.
> > > >   - path to Java. By default it is java. Will this apply to
your
> > > > server?
> > > >
> > > > Tatiana
> > > >
> > > >
> > > > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > At this time, the system admin has the following installed
on
> > > > > my
> > > > > workstation:
> > > > > MariaDB, Java, Tomcat, and R
> > > > >
> > > > > He says that a .war file is needed and that it must be
placed
> > > > > in
> > > > > a specific directory under Tomcat to allow the METViewer to
> > > > > deploy.
> > > > >
> > > > > Based on this, what is the next step?
> > > > >
> > > > > Thanks.
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > >
> > > > > -----Original Message-----
> > > > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > > METviewer
> > > > >
> > > > > - METviewer will work with any version of Tomcat starting
from
> > > > > Tomcat6
> > > > > and
> > > > > ending with  Tomcat8.
> > > > > - You can install packages after R is installed.
> > > > >   - METviewer supports MariaDB. We use this setup on one of
our
> > > > > servers
> > > > >   - By  modules I mean the load/batch portion of METviewer (
> > > > > the
> > > > > command line interface ) and the web application.
> > > > >
> > > > > The batch/load module is basically a folder with scripts and
> > > > > executables. Web application comes as a .war file that can
be
> > > > > put under Tomcat.
> > > > > Ant build script requires some setting variables and builds
> > > > > both
> > > > > modules OR you would give me settings and I build modules
for
> > > > > you.
> > > > >
> > > > > Tatiana
> > > > >
> > > > >
> > > > > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > My system admin has started the provisioning of my
> > > > > > workstation.
> > > > > >
> > > > > > In answer to your question about Java the following shows
the
> > > > > > version:
> > > > > > java -version
> > > > > > java version "1.8.0_212"
> > > > > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
> > > > > > HotSpot(TM)
> > > > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > > > >
> > > > > > Regards my preference for the running mode, I would like
to
> > > > > > use the web UI. Is there a version requirement for Tomcat?
> > > > > >
> > > > > > He has installed MariaDB (myql for RHEL7) and is currently
in
> > > > > > the process of installing R. I assume that once R is
> > > > > > installed
> > > > > > that I can install the packages you mention below,
correct?
> > > > > >
> > > > > > I'm not quite sure what METViewer modules are for
answering
> > > > > > your question about whether I want to build them or have
you
> > > > > > do it.
> > > > > > Could
> > > > > > you provide more explanation or point me to where I can
read
> > > > > > more?
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > <john.w.raby2.civ at mail.mil>
> > > > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing
> > > > > > METviewer
> > > > > >
> > > > > > All active links contained in this email were disabled.
> > > > > > Please verify the identity of the sender, and confirm the
> > > > > > authenticity of all links contained within the message
prior
> > > > > > to copying and pasting the address to a Web browser.
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > ----
> > > > > >
> > > > > > Hi John,
> > > > > >     Are you planning to run METviewer using the batch mode
> > > > > > only
> > > > > >  (from the command  line with XML configuration) or with
the
> > > > > > web user interface option?
> > > > > > If you
> > > > > >    need UI you need to install Tomcat. With Tomcat only,
you
> > > > > >  can  access UI using  Caution-
> > > > > > http://localhost:8080/metviewer.
> > > > > >  For  more advanced settings you need to use Apache/Tomcat
> > > > > > configurations.
> > > > > > You also need to install R packages from R console:
> > > > > > install.packages('boot')
> > > > > > install.packages('plotrix')
> > > > > > install.packages('gsl')
> > > > > > install.packages('data.table')
> > > > > > install.packages('verification')
> > > > > >
> > > > > > I can build METviewer modules for you or you can do it by
> > > > > > yourself.
> > > > > > In
> > > > > > this case you need to install Ant. Let me know your
> > > > > > preference.
> > > > > > What is the version of Java you going to use?
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > I am starting the preps to have METViewer installed on
my
> > > > > > > local linux workstation. I already have Java and need to
> > > > > > > have R and MySQL installed. Anything else?
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > >
> > > > > >
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > > CLASSIFICATION: UNCLASSIFIED
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



------------------------------------------------
Subject: Installing METviewer
From: Raby, John W USA CIV
Time: Tue Aug 06 15:28:09 2019

CLASSIFICATION: UNCLASSIFIED

Thanks, Tatiana. Consulting with sysadm on this now. Will let you know
the results.

R/
John

-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Tuesday, August 6, 2019 3:17 PM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

All active links contained in this email were disabled.  Please verify
the identity of the sender, and confirm the authenticity of all links
contained within the message prior to copying and pasting the address
to a Web browser.




----

I checked R gsl dependencies and it does require gsl-devel To install
gsl-devel you (or your sys admin)  need to run yum install gsl-devel

Tatiana

On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> So, gsl itself is not required in order to have a successful install
> of the R package gsl, correct?
>
> R/
> John
>
> -----Original Message-----
>  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> Sent: Tuesday, August 6, 2019 2:50 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> gsl and "R package gsl" are different libraries and are needed to be
> installed separately.
> I'm not sure that  there is a dependency between of them but if
there
> is than R gsl would depend on the standard gsl.
>
> Tatiana
>
> On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > Thanks for your guidance on resolving the issues. I will consult
> > with my sysadm and get back to you soon.
> >
> > Regards the gsl package, I read about the eclv plot and I don't
have
> > an interest at the present time. Was the loading of the gsl
package
> > supposed to do an install of the gsl? I have installed gsl as part
> > of the provisioning required prior to installing MET V5.2 on the
> > HPC. If I was able to do that on my workstation and was
successful,
> > would that alleviate the problem and allow the package to be
> > installed?
> >
> > R/
> > John
> >
> >
> >
> > -----Original Message-----
> >  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > Sent: Tuesday, August 6, 2019 2:13 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > John,
> >
> > By default, R uses the /tmp directory to install packages. The
/tmp
> > directory is often marked as “noexec”. This means that no file
under
> > /tmp can ever be executed.
> > To solve this problem you need  to set the TMPDIR environment
> > variable:
> > For csh shell:
> > mkdir ~/tmp
> > setenv TMPDIR ~/tmp
> >
> > for bash:
> > mkdir ~/tmp
> > export TMPDIR=~/tmp
> >
> > gsl package is only needed for Eclv plot. If you are not planning
to
> > create these plots you don't need to install this package.
> >
> > Tatiana
> >
> >
> >
> > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil wrote:
> > > Tatiana -
> > >
> > > Today I was able to resume the loading of the R packages you
> > > specified in an earlier email. There were issues encountered
when
> > > loading 'gsl"
> > > and 'verification'. I'm not sure where to start debugging the
> > > issues.
> > > I captured the screen dialog so you can see more specific info
> > > about them. See attached text file.
> > >
> > > The R packages which appear to have loaded successfully are:
> > > 'boot', 'plotrix', and 'data.table'
> > >
> > > What do you recommend for troubleshooting these issues?
> > >
> > > At this point, I believe that you have all the info you
requested
> > > which was provided in earlier emails.
> > >
> > > Let me know if you need additional info to proceed.
> > >
> > > Thanks.
> > >
> > > R/
> > >  John
> > >
> > >
> > >
> > >
> > > ________________________________________
> > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > To: met_help at ucar.edu
> > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > Installing METviewer (UNCLASSIFIED)
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > I'm sorry about the delay in getting back to you with an update.
> > >
> > > My workstation is fully operational now. I have not had a chance
> > > to load the remaining R packages.
> > >
> > > In answer to the questions you asked me:
> > >
> > > - database host and port. By default it is localhost:3306. Will
> > > this apply to your server?
> > >       YES
> > > - database user name and password. This is for the user that
would
> > > insert and retrieve date to/from database
> > >       ruser / whitesands
> > > - the path to Tomcat's webapp directory
> > >       /opt/tomcat7/webapp
> > > - the path where the R executables will be installed.
> > >       /home/jraby/R/R-3.6.1/bin/
> > > - path to Java. By default it is java. Will this apply to your
> > > server?
> > >       /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > - path where the METViewer
> > > executables should be located.
> > >       /home/jraby/METViewer
> > >
> > > Let me know if you need other details.
> > >
> > > R/
> > > John
> > >
> > >
> > > -----Original Message-----
> > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > Sent: Thursday, July 25, 2019 8:35 AM
> > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > Installing METviewer
> > > (UNCLASSIFIED)
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > FYI, the issue with my workstation has been resolved and I
should
> > > receive it back in my office today. I will load the remaining R
> > > packages which you listed in your earlier email. I'll have my
> > > system admin send you the info you requested last week soon.
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > Sent: Friday, July 19, 2019 3:23 PM
> > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > Installing METviewer
> > > (UNCLASSIFIED)
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > My system admin was able to change the permissions on the
library
> > > and all other directories in the install directory and I was
able
> > > to load the first R package successfully at:
> > > /home/jraby/R/R-3.6.1/library
> > >
> > > My system admin was working on obtaining the rest of the info
you
> > > requested.
> > > Unfortunately, the workstation would not complete a reboot and
> > > cannot be accessed now. He is looking into resolving that
problem
> > > now. Not sure whether the problem is connected with the
> > > installation of the new apps associated with getting the system
> > > provisioned for METViewer, but it is strangely coincident.
> > >
> > > I'll be back in touch on Monday to provide an update on the
status.
> > >
> > > Have a great weekend!
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > > From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > > Sent: Friday, July 19, 2019 12:57 PM
> > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > METviewer can work with personal libraries. Let me know the path
> > > and I add it to build.
> > > Is it /home/jraby/R/R-3.6.1/library?
> > >
> > > Tatiana
> > >
> > > On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil wrote:
> > > > Tatiana -
> > > >
> > > > Thanks for the info and guidance.
> > > >
> > > > I tried loading the R packages with user permissions, but it
> > > > can't due to an apparent permissions issue. See the following
> > > > dialog:
> > > > > install.packages('boot')
> > > > Warning in install.packages("boot") :
> > > >     'lib = "/home/jraby/R/R-3.6.1/library"' is not writable
> > > > Would you like to use a personal library instead?
> > > > (yes/No/cancel)
> > > >
> > > > If I set up a "personal" library as they suggest, will
METViewer
> > > > have an issue?
> > > >
> > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > >
> > > > My system admin is working on getting answers to the remaining
> > > > questions.
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > > ________________________________________
> > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > Hi John,
> > > > Were you able to install the additional R packages?
> > > > I can build and provide you .war file as well as other
> > > > executables.
> > > > For that, I need some parameters  to build these files:
> > > >   - database host and port. By default it is localhost:3306.
> > > > Will this apply to your server?
> > > >   - database user name and password. This is for the user that
> > > > would insert and retrieve date to/from database
> > > >   - the path to Rscript executable. By default it is just
> > > > Rscript.Will this apply to your server?
> > > > - the path to Tomcat's webapp directory
> > > > - the path where the executables will be installed.
> > > >   - path to Java. By default it is java. Will this apply to
your
> > > > server?
> > > >
> > > > Tatiana
> > > >
> > > >
> > > > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > At this time, the system admin has the following installed
on
> > > > > my
> > > > > workstation:
> > > > > MariaDB, Java, Tomcat, and R
> > > > >
> > > > > He says that a .war file is needed and that it must be
placed
> > > > > in a specific directory under Tomcat to allow the METViewer
to
> > > > > deploy.
> > > > >
> > > > > Based on this, what is the next step?
> > > > >
> > > > > Thanks.
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > >
> > > > > -----Original Message-----
> > > > > From: Tatiana Burek via RT [Caution-
mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer
> > > > >
> > > > > - METviewer will work with any version of Tomcat starting
from
> > > > > Tomcat6
> > > > > and
> > > > > ending with  Tomcat8.
> > > > > - You can install packages after R is installed.
> > > > >   - METviewer supports MariaDB. We use this setup on one of
> > > > > our servers
> > > > >   - By  modules I mean the load/batch portion of METviewer (
> > > > > the command line interface ) and the web application.
> > > > >
> > > > > The batch/load module is basically a folder with scripts and
> > > > > executables. Web application comes as a .war file that can
be
> > > > > put under Tomcat.
> > > > > Ant build script requires some setting variables and builds
> > > > > both modules OR you would give me settings and I build
modules
> > > > > for you.
> > > > >
> > > > > Tatiana
> > > > >
> > > > >
> > > > > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > My system admin has started the provisioning of my
> > > > > > workstation.
> > > > > >
> > > > > > In answer to your question about Java the following shows
> > > > > > the
> > > > > > version:
> > > > > > java -version
> > > > > > java version "1.8.0_212"
> > > > > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
> > > > > > HotSpot(TM)
> > > > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > > > >
> > > > > > Regards my preference for the running mode, I would like
to
> > > > > > use the web UI. Is there a version requirement for Tomcat?
> > > > > >
> > > > > > He has installed MariaDB (myql for RHEL7) and is currently
> > > > > > in the process of installing R. I assume that once R is
> > > > > > installed that I can install the packages you mention
below,
> > > > > > correct?
> > > > > >
> > > > > > I'm not quite sure what METViewer modules are for
answering
> > > > > > your question about whether I want to build them or have
you
> > > > > > do it.
> > > > > > Could
> > > > > > you provide more explanation or point me to where I can
read
> > > > > > more?
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Tatiana Burek via RT
> > > > > > [Caution-mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > <john.w.raby2.civ at mail.mil>
> > > > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > All active links contained in this email were disabled.
> > > > > > Please verify the identity of the sender, and confirm the
> > > > > > authenticity of all links contained within the message
prior
> > > > > > to copying and pasting the address to a Web browser.
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > ----
> > > > > >
> > > > > > Hi John,
> > > > > >     Are you planning to run METviewer using the batch mode
> > > > > > only  (from the command  line with XML configuration) or
> > > > > > with the web user interface option?
> > > > > > If you
> > > > > >    need UI you need to install Tomcat. With Tomcat only,
you
> > > > > > can  access UI using  Caution-
> > > > > > Caution-http://localhost:8080/metviewer.
> > > > > >  For  more advanced settings you need to use Apache/Tomcat
> > > > > > configurations.
> > > > > > You also need to install R packages from R console:
> > > > > > install.packages('boot')
> > > > > > install.packages('plotrix')
> > > > > > install.packages('gsl')
> > > > > > install.packages('data.table')
> > > > > > install.packages('verification')
> > > > > >
> > > > > > I can build METviewer modules for you or you can do it by
> > > > > > yourself.
> > > > > > In
> > > > > > this case you need to install Ant. Let me know your
> > > > > > preference.
> > > > > > What is the version of Java you going to use?
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > I am starting the preps to have METViewer installed on
my
> > > > > > > local linux workstation. I already have Java and need to
> > > > > > > have R and MySQL installed. Anything else?
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > >
> > > > > >
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > > CLASSIFICATION: UNCLASSIFIED
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



CLASSIFICATION: UNCLASSIFIED

------------------------------------------------
Subject: Installing METviewer
From: Raby, John W USA CIV
Time: Tue Aug 06 16:40:00 2019

CLASSIFICATION: UNCLASSIFIED

Tatiana -

My sysadm installed gsl-devel using the command you provided. I just
tried to load the R package, but it has the same error:

> install.packages('gsl')
--- Please select a CRAN mirror for use in this session ---
I selected 63 (USA MI)

trying URL
'https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.1-6.tar.gz'
Content type 'application/octet-stream' length 189794 bytes (185 KB)
==================================================
downloaded 185 KB

* installing *source* package 'gsl' ...
** package 'gsl' successfully unpacked and MD5 sums checked
** using staged installation
ERROR: 'configure' exists but is not executable -- see the 'R
Installation and Administration Manual'
* removing '/home/jraby/R/R-3.6.1/library/gsl'

The downloaded source packages are in
        '/tmp/RtmpFotJTN/downloaded_packages'
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages("gsl") :
  installation of package 'gsl' had non-zero exit status

R/
John



-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Tuesday, August 6, 2019 3:17 PM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

All active links contained in this email were disabled.  Please verify
the identity of the sender, and confirm the authenticity of all links
contained within the message prior to copying and pasting the address
to a Web browser.




----

I checked R gsl dependencies and it does require gsl-devel To install
gsl-devel you (or your sys admin)  need to run yum install gsl-devel

Tatiana

On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> So, gsl itself is not required in order to have a successful install
> of the R package gsl, correct?
>
> R/
> John
>
> -----Original Message-----
>  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> Sent: Tuesday, August 6, 2019 2:50 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> gsl and "R package gsl" are different libraries and are needed to be
> installed separately.
> I'm not sure that  there is a dependency between of them but if
there
> is than R gsl would depend on the standard gsl.
>
> Tatiana
>
> On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > Thanks for your guidance on resolving the issues. I will consult
> > with my sysadm and get back to you soon.
> >
> > Regards the gsl package, I read about the eclv plot and I don't
have
> > an interest at the present time. Was the loading of the gsl
package
> > supposed to do an install of the gsl? I have installed gsl as part
> > of the provisioning required prior to installing MET V5.2 on the
> > HPC. If I was able to do that on my workstation and was
successful,
> > would that alleviate the problem and allow the package to be
> > installed?
> >
> > R/
> > John
> >
> >
> >
> > -----Original Message-----
> >  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > Sent: Tuesday, August 6, 2019 2:13 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > John,
> >
> > By default, R uses the /tmp directory to install packages. The
/tmp
> > directory is often marked as “noexec”. This means that no file
under
> > /tmp can ever be executed.
> > To solve this problem you need  to set the TMPDIR environment
> > variable:
> > For csh shell:
> > mkdir ~/tmp
> > setenv TMPDIR ~/tmp
> >
> > for bash:
> > mkdir ~/tmp
> > export TMPDIR=~/tmp
> >
> > gsl package is only needed for Eclv plot. If you are not planning
to
> > create these plots you don't need to install this package.
> >
> > Tatiana
> >
> >
> >
> > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil wrote:
> > > Tatiana -
> > >
> > > Today I was able to resume the loading of the R packages you
> > > specified in an earlier email. There were issues encountered
when
> > > loading 'gsl"
> > > and 'verification'. I'm not sure where to start debugging the
> > > issues.
> > > I captured the screen dialog so you can see more specific info
> > > about them. See attached text file.
> > >
> > > The R packages which appear to have loaded successfully are:
> > > 'boot', 'plotrix', and 'data.table'
> > >
> > > What do you recommend for troubleshooting these issues?
> > >
> > > At this point, I believe that you have all the info you
requested
> > > which was provided in earlier emails.
> > >
> > > Let me know if you need additional info to proceed.
> > >
> > > Thanks.
> > >
> > > R/
> > >  John
> > >
> > >
> > >
> > >
> > > ________________________________________
> > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > To: met_help at ucar.edu
> > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > Installing METviewer (UNCLASSIFIED)
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > I'm sorry about the delay in getting back to you with an update.
> > >
> > > My workstation is fully operational now. I have not had a chance
> > > to load the remaining R packages.
> > >
> > > In answer to the questions you asked me:
> > >
> > > - database host and port. By default it is localhost:3306. Will
> > > this apply to your server?
> > >       YES
> > > - database user name and password. This is for the user that
would
> > > insert and retrieve date to/from database
> > >       ruser / whitesands
> > > - the path to Tomcat's webapp directory
> > >       /opt/tomcat7/webapp
> > > - the path where the R executables will be installed.
> > >       /home/jraby/R/R-3.6.1/bin/
> > > - path to Java. By default it is java. Will this apply to your
> > > server?
> > >       /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > - path where the METViewer
> > > executables should be located.
> > >       /home/jraby/METViewer
> > >
> > > Let me know if you need other details.
> > >
> > > R/
> > > John
> > >
> > >
> > > -----Original Message-----
> > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > Sent: Thursday, July 25, 2019 8:35 AM
> > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > Installing METviewer
> > > (UNCLASSIFIED)
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > FYI, the issue with my workstation has been resolved and I
should
> > > receive it back in my office today. I will load the remaining R
> > > packages which you listed in your earlier email. I'll have my
> > > system admin send you the info you requested last week soon.
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > Sent: Friday, July 19, 2019 3:23 PM
> > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > Installing METviewer
> > > (UNCLASSIFIED)
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > My system admin was able to change the permissions on the
library
> > > and all other directories in the install directory and I was
able
> > > to load the first R package successfully at:
> > > /home/jraby/R/R-3.6.1/library
> > >
> > > My system admin was working on obtaining the rest of the info
you
> > > requested.
> > > Unfortunately, the workstation would not complete a reboot and
> > > cannot be accessed now. He is looking into resolving that
problem
> > > now. Not sure whether the problem is connected with the
> > > installation of the new apps associated with getting the system
> > > provisioned for METViewer, but it is strangely coincident.
> > >
> > > I'll be back in touch on Monday to provide an update on the
status.
> > >
> > > Have a great weekend!
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > > From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > > Sent: Friday, July 19, 2019 12:57 PM
> > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > METviewer can work with personal libraries. Let me know the path
> > > and I add it to build.
> > > Is it /home/jraby/R/R-3.6.1/library?
> > >
> > > Tatiana
> > >
> > > On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil wrote:
> > > > Tatiana -
> > > >
> > > > Thanks for the info and guidance.
> > > >
> > > > I tried loading the R packages with user permissions, but it
> > > > can't due to an apparent permissions issue. See the following
> > > > dialog:
> > > > > install.packages('boot')
> > > > Warning in install.packages("boot") :
> > > >     'lib = "/home/jraby/R/R-3.6.1/library"' is not writable
> > > > Would you like to use a personal library instead?
> > > > (yes/No/cancel)
> > > >
> > > > If I set up a "personal" library as they suggest, will
METViewer
> > > > have an issue?
> > > >
> > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > >
> > > > My system admin is working on getting answers to the remaining
> > > > questions.
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > > ________________________________________
> > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > Hi John,
> > > > Were you able to install the additional R packages?
> > > > I can build and provide you .war file as well as other
> > > > executables.
> > > > For that, I need some parameters  to build these files:
> > > >   - database host and port. By default it is localhost:3306.
> > > > Will this apply to your server?
> > > >   - database user name and password. This is for the user that
> > > > would insert and retrieve date to/from database
> > > >   - the path to Rscript executable. By default it is just
> > > > Rscript.Will this apply to your server?
> > > > - the path to Tomcat's webapp directory
> > > > - the path where the executables will be installed.
> > > >   - path to Java. By default it is java. Will this apply to
your
> > > > server?
> > > >
> > > > Tatiana
> > > >
> > > >
> > > > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > At this time, the system admin has the following installed
on
> > > > > my
> > > > > workstation:
> > > > > MariaDB, Java, Tomcat, and R
> > > > >
> > > > > He says that a .war file is needed and that it must be
placed
> > > > > in a specific directory under Tomcat to allow the METViewer
to
> > > > > deploy.
> > > > >
> > > > > Based on this, what is the next step?
> > > > >
> > > > > Thanks.
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > >
> > > > > -----Original Message-----
> > > > > From: Tatiana Burek via RT [Caution-
mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer
> > > > >
> > > > > - METviewer will work with any version of Tomcat starting
from
> > > > > Tomcat6
> > > > > and
> > > > > ending with  Tomcat8.
> > > > > - You can install packages after R is installed.
> > > > >   - METviewer supports MariaDB. We use this setup on one of
> > > > > our servers
> > > > >   - By  modules I mean the load/batch portion of METviewer (
> > > > > the command line interface ) and the web application.
> > > > >
> > > > > The batch/load module is basically a folder with scripts and
> > > > > executables. Web application comes as a .war file that can
be
> > > > > put under Tomcat.
> > > > > Ant build script requires some setting variables and builds
> > > > > both modules OR you would give me settings and I build
modules
> > > > > for you.
> > > > >
> > > > > Tatiana
> > > > >
> > > > >
> > > > > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > My system admin has started the provisioning of my
> > > > > > workstation.
> > > > > >
> > > > > > In answer to your question about Java the following shows
> > > > > > the
> > > > > > version:
> > > > > > java -version
> > > > > > java version "1.8.0_212"
> > > > > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
> > > > > > HotSpot(TM)
> > > > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > > > >
> > > > > > Regards my preference for the running mode, I would like
to
> > > > > > use the web UI. Is there a version requirement for Tomcat?
> > > > > >
> > > > > > He has installed MariaDB (myql for RHEL7) and is currently
> > > > > > in the process of installing R. I assume that once R is
> > > > > > installed that I can install the packages you mention
below,
> > > > > > correct?
> > > > > >
> > > > > > I'm not quite sure what METViewer modules are for
answering
> > > > > > your question about whether I want to build them or have
you
> > > > > > do it.
> > > > > > Could
> > > > > > you provide more explanation or point me to where I can
read
> > > > > > more?
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Tatiana Burek via RT
> > > > > > [Caution-mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > <john.w.raby2.civ at mail.mil>
> > > > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > All active links contained in this email were disabled.
> > > > > > Please verify the identity of the sender, and confirm the
> > > > > > authenticity of all links contained within the message
prior
> > > > > > to copying and pasting the address to a Web browser.
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > ----
> > > > > >
> > > > > > Hi John,
> > > > > >     Are you planning to run METviewer using the batch mode
> > > > > > only  (from the command  line with XML configuration) or
> > > > > > with the web user interface option?
> > > > > > If you
> > > > > >    need UI you need to install Tomcat. With Tomcat only,
you
> > > > > > can  access UI using  Caution-
> > > > > > Caution-http://localhost:8080/metviewer.
> > > > > >  For  more advanced settings you need to use Apache/Tomcat
> > > > > > configurations.
> > > > > > You also need to install R packages from R console:
> > > > > > install.packages('boot')
> > > > > > install.packages('plotrix')
> > > > > > install.packages('gsl')
> > > > > > install.packages('data.table')
> > > > > > install.packages('verification')
> > > > > >
> > > > > > I can build METviewer modules for you or you can do it by
> > > > > > yourself.
> > > > > > In
> > > > > > this case you need to install Ant. Let me know your
> > > > > > preference.
> > > > > > What is the version of Java you going to use?
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > I am starting the preps to have METViewer installed on
my
> > > > > > > local linux workstation. I already have Java and need to
> > > > > > > have R and MySQL installed. Anything else?
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > >
> > > > > >
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > > CLASSIFICATION: UNCLASSIFIED
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



CLASSIFICATION: UNCLASSIFIED

------------------------------------------------
Subject: RE:[rt.rap.ucar.edu #91137] Installing METviewer (UNCLASSIFIED)
From: Raby, John W USA CIV
Time: Wed Aug 07 07:28:44 2019

Tatiana -

This morning I tried a couple of tests to see if I could load the gsl
R package. First, I opened a terminal and just ran the install command
in R as before but selected a different CRAN site for downloading the
package. The result was the same as the error I reported in my email
below.

Then I opened a new terminal and set the env variables you described
in an earlier email for bash. I then attempted to install the gsl R
package, but this time the dialog was different. Apparently it got
past the issue which prevented execution before, and now it can't
compile the package. See the following dialog:

trying URL
'https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.1-6.tar.gz'
Content type 'application/octet-stream' length 189794 bytes (185 KB)
==================================================
downloaded 185 KB

* installing *source* package 'gsl' ...
** package 'gsl' successfully unpacked and MD5 sums checked
** using staged installation
checking for gsl-config... /usr/bin/gsl-config
checking if GSL version >= 2.1... checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
-I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c airy.c -o
airy.o
gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
-I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c bessel.c
-o bessel.o
gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
-I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c clausen.c
-o clausen.o
gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
-I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c coulomb.c
-o coulomb.o
gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
-I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c coupling.c
-o coupling.o
gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
-I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c dawson.c
-o dawson.o
gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
-I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c debye.c -o
debye.o
gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
-I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c dilog.c -o
dilog.o
gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
-I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c ellint.c
-o ellint.o
ellint.c: In function 'ellint_D_e':
ellint.c:82:5: warning: passing argument 4 of 'gsl_sf_ellint_D_e'
makes integer from pointer without a cast [enabled by default]
     status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
&result) ;
     ^
In file included from ellint.c:1:0:
/usr/include/gsl/gsl_sf_ellint.h:84:5: note: expected 'gsl_mode_t' but
argument is of type 'struct gsl_sf_result *'
 int gsl_sf_ellint_D_e(double phi, double k, double n, gsl_mode_t
mode, gsl_sf_result * result);
     ^
ellint.c:82:5: error: too few arguments to function
'gsl_sf_ellint_D_e'
     status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
&result) ;
     ^
In file included from ellint.c:1:0:
/usr/include/gsl/gsl_sf_ellint.h:84:5: note: declared here
 int gsl_sf_ellint_D_e(double phi, double k, double n, gsl_mode_t
mode, gsl_sf_result * result);
     ^
make: *** [ellint.o] Error 1
ERROR: compilation failed for package 'gsl'
* removing '/home/jraby/R/R-3.6.1/library/gsl'

The downloaded source packages are in
	'/home/jraby/tmp/RtmpO0i7Ze/downloaded_packages'
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages("gsl") :
  installation of package 'gsl' had non-zero exit status

R/
John


________________________________________
From: Raby, John W CIV USARMY CCDC ARL (USA)
Sent: Tuesday, August 06, 2019 4:39 PM
To: met_help at ucar.edu
Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer (UNCLASSIFIED)

CLASSIFICATION: UNCLASSIFIED

Tatiana -

My sysadm installed gsl-devel using the command you provided. I just
tried to load the R package, but it has the same error:

> install.packages('gsl')
--- Please select a CRAN mirror for use in this session ---
I selected 63 (USA MI)

trying URL
'https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.1-6.tar.gz'
Content type 'application/octet-stream' length 189794 bytes (185 KB)
==================================================
downloaded 185 KB

* installing *source* package 'gsl' ...
** package 'gsl' successfully unpacked and MD5 sums checked
** using staged installation
ERROR: 'configure' exists but is not executable -- see the 'R
Installation and Administration Manual'
* removing '/home/jraby/R/R-3.6.1/library/gsl'

The downloaded source packages are in
        '/tmp/RtmpFotJTN/downloaded_packages'
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages("gsl") :
  installation of package 'gsl' had non-zero exit status

R/
John



-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Tuesday, August 6, 2019 3:17 PM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

All active links contained in this email were disabled.  Please verify
the identity of the sender, and confirm the authenticity of all links
contained within the message prior to copying and pasting the address
to a Web browser.




----

I checked R gsl dependencies and it does require gsl-devel To install
gsl-devel you (or your sys admin)  need to run yum install gsl-devel

Tatiana

On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> So, gsl itself is not required in order to have a successful install
> of the R package gsl, correct?
>
> R/
> John
>
> -----Original Message-----
>  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> Sent: Tuesday, August 6, 2019 2:50 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> gsl and "R package gsl" are different libraries and are needed to be
> installed separately.
> I'm not sure that  there is a dependency between of them but if
there
> is than R gsl would depend on the standard gsl.
>
> Tatiana
>
> On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > Thanks for your guidance on resolving the issues. I will consult
> > with my sysadm and get back to you soon.
> >
> > Regards the gsl package, I read about the eclv plot and I don't
have
> > an interest at the present time. Was the loading of the gsl
package
> > supposed to do an install of the gsl? I have installed gsl as part
> > of the provisioning required prior to installing MET V5.2 on the
> > HPC. If I was able to do that on my workstation and was
successful,
> > would that alleviate the problem and allow the package to be
> > installed?
> >
> > R/
> > John
> >
> >
> >
> > -----Original Message-----
> >  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > Sent: Tuesday, August 6, 2019 2:13 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > John,
> >
> > By default, R uses the /tmp directory to install packages. The
/tmp
> > directory is often marked as “noexec”. This means that no file
under
> > /tmp can ever be executed.
> > To solve this problem you need  to set the TMPDIR environment
> > variable:
> > For csh shell:
> > mkdir ~/tmp
> > setenv TMPDIR ~/tmp
> >
> > for bash:
> > mkdir ~/tmp
> > export TMPDIR=~/tmp
> >
> > gsl package is only needed for Eclv plot. If you are not planning
to
> > create these plots you don't need to install this package.
> >
> > Tatiana
> >
> >
> >
> > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil wrote:
> > > Tatiana -
> > >
> > > Today I was able to resume the loading of the R packages you
> > > specified in an earlier email. There were issues encountered
when
> > > loading 'gsl"
> > > and 'verification'. I'm not sure where to start debugging the
> > > issues.
> > > I captured the screen dialog so you can see more specific info
> > > about them. See attached text file.
> > >
> > > The R packages which appear to have loaded successfully are:
> > > 'boot', 'plotrix', and 'data.table'
> > >
> > > What do you recommend for troubleshooting these issues?
> > >
> > > At this point, I believe that you have all the info you
requested
> > > which was provided in earlier emails.
> > >
> > > Let me know if you need additional info to proceed.
> > >
> > > Thanks.
> > >
> > > R/
> > >  John
> > >
> > >
> > >
> > >
> > > ________________________________________
> > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > To: met_help at ucar.edu
> > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > Installing METviewer (UNCLASSIFIED)
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > I'm sorry about the delay in getting back to you with an update.
> > >
> > > My workstation is fully operational now. I have not had a chance
> > > to load the remaining R packages.
> > >
> > > In answer to the questions you asked me:
> > >
> > > - database host and port. By default it is localhost:3306. Will
> > > this apply to your server?
> > >       YES
> > > - database user name and password. This is for the user that
would
> > > insert and retrieve date to/from database
> > >       ruser / whitesands
> > > - the path to Tomcat's webapp directory
> > >       /opt/tomcat7/webapp
> > > - the path where the R executables will be installed.
> > >       /home/jraby/R/R-3.6.1/bin/
> > > - path to Java. By default it is java. Will this apply to your
> > > server?
> > >       /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > - path where the METViewer
> > > executables should be located.
> > >       /home/jraby/METViewer
> > >
> > > Let me know if you need other details.
> > >
> > > R/
> > > John
> > >
> > >
> > > -----Original Message-----
> > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > Sent: Thursday, July 25, 2019 8:35 AM
> > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > Installing METviewer
> > > (UNCLASSIFIED)
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > FYI, the issue with my workstation has been resolved and I
should
> > > receive it back in my office today. I will load the remaining R
> > > packages which you listed in your earlier email. I'll have my
> > > system admin send you the info you requested last week soon.
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > Sent: Friday, July 19, 2019 3:23 PM
> > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > Installing METviewer
> > > (UNCLASSIFIED)
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > My system admin was able to change the permissions on the
library
> > > and all other directories in the install directory and I was
able
> > > to load the first R package successfully at:
> > > /home/jraby/R/R-3.6.1/library
> > >
> > > My system admin was working on obtaining the rest of the info
you
> > > requested.
> > > Unfortunately, the workstation would not complete a reboot and
> > > cannot be accessed now. He is looking into resolving that
problem
> > > now. Not sure whether the problem is connected with the
> > > installation of the new apps associated with getting the system
> > > provisioned for METViewer, but it is strangely coincident.
> > >
> > > I'll be back in touch on Monday to provide an update on the
status.
> > >
> > > Have a great weekend!
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > > From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > > Sent: Friday, July 19, 2019 12:57 PM
> > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > METviewer can work with personal libraries. Let me know the path
> > > and I add it to build.
> > > Is it /home/jraby/R/R-3.6.1/library?
> > >
> > > Tatiana
> > >
> > > On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil wrote:
> > > > Tatiana -
> > > >
> > > > Thanks for the info and guidance.
> > > >
> > > > I tried loading the R packages with user permissions, but it
> > > > can't due to an apparent permissions issue. See the following
> > > > dialog:
> > > > > install.packages('boot')
> > > > Warning in install.packages("boot") :
> > > >     'lib = "/home/jraby/R/R-3.6.1/library"' is not writable
> > > > Would you like to use a personal library instead?
> > > > (yes/No/cancel)
> > > >
> > > > If I set up a "personal" library as they suggest, will
METViewer
> > > > have an issue?
> > > >
> > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > >
> > > > My system admin is working on getting answers to the remaining
> > > > questions.
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > > ________________________________________
> > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > Hi John,
> > > > Were you able to install the additional R packages?
> > > > I can build and provide you .war file as well as other
> > > > executables.
> > > > For that, I need some parameters  to build these files:
> > > >   - database host and port. By default it is localhost:3306.
> > > > Will this apply to your server?
> > > >   - database user name and password. This is for the user that
> > > > would insert and retrieve date to/from database
> > > >   - the path to Rscript executable. By default it is just
> > > > Rscript.Will this apply to your server?
> > > > - the path to Tomcat's webapp directory
> > > > - the path where the executables will be installed.
> > > >   - path to Java. By default it is java. Will this apply to
your
> > > > server?
> > > >
> > > > Tatiana
> > > >
> > > >
> > > > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > At this time, the system admin has the following installed
on
> > > > > my
> > > > > workstation:
> > > > > MariaDB, Java, Tomcat, and R
> > > > >
> > > > > He says that a .war file is needed and that it must be
placed
> > > > > in a specific directory under Tomcat to allow the METViewer
to
> > > > > deploy.
> > > > >
> > > > > Based on this, what is the next step?
> > > > >
> > > > > Thanks.
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > >
> > > > > -----Original Message-----
> > > > > From: Tatiana Burek via RT [Caution-
mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer
> > > > >
> > > > > - METviewer will work with any version of Tomcat starting
from
> > > > > Tomcat6
> > > > > and
> > > > > ending with  Tomcat8.
> > > > > - You can install packages after R is installed.
> > > > >   - METviewer supports MariaDB. We use this setup on one of
> > > > > our servers
> > > > >   - By  modules I mean the load/batch portion of METviewer (
> > > > > the command line interface ) and the web application.
> > > > >
> > > > > The batch/load module is basically a folder with scripts and
> > > > > executables. Web application comes as a .war file that can
be
> > > > > put under Tomcat.
> > > > > Ant build script requires some setting variables and builds
> > > > > both modules OR you would give me settings and I build
modules
> > > > > for you.
> > > > >
> > > > > Tatiana
> > > > >
> > > > >
> > > > > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > My system admin has started the provisioning of my
> > > > > > workstation.
> > > > > >
> > > > > > In answer to your question about Java the following shows
> > > > > > the
> > > > > > version:
> > > > > > java -version
> > > > > > java version "1.8.0_212"
> > > > > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
> > > > > > HotSpot(TM)
> > > > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > > > >
> > > > > > Regards my preference for the running mode, I would like
to
> > > > > > use the web UI. Is there a version requirement for Tomcat?
> > > > > >
> > > > > > He has installed MariaDB (myql for RHEL7) and is currently
> > > > > > in the process of installing R. I assume that once R is
> > > > > > installed that I can install the packages you mention
below,
> > > > > > correct?
> > > > > >
> > > > > > I'm not quite sure what METViewer modules are for
answering
> > > > > > your question about whether I want to build them or have
you
> > > > > > do it.
> > > > > > Could
> > > > > > you provide more explanation or point me to where I can
read
> > > > > > more?
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Tatiana Burek via RT
> > > > > > [Caution-mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > <john.w.raby2.civ at mail.mil>
> > > > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > All active links contained in this email were disabled.
> > > > > > Please verify the identity of the sender, and confirm the
> > > > > > authenticity of all links contained within the message
prior
> > > > > > to copying and pasting the address to a Web browser.
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > ----
> > > > > >
> > > > > > Hi John,
> > > > > >     Are you planning to run METviewer using the batch mode
> > > > > > only  (from the command  line with XML configuration) or
> > > > > > with the web user interface option?
> > > > > > If you
> > > > > >    need UI you need to install Tomcat. With Tomcat only,
you
> > > > > > can  access UI using  Caution-
> > > > > > Caution-http://localhost:8080/metviewer.
> > > > > >  For  more advanced settings you need to use Apache/Tomcat
> > > > > > configurations.
> > > > > > You also need to install R packages from R console:
> > > > > > install.packages('boot')
> > > > > > install.packages('plotrix')
> > > > > > install.packages('gsl')
> > > > > > install.packages('data.table')
> > > > > > install.packages('verification')
> > > > > >
> > > > > > I can build METviewer modules for you or you can do it by
> > > > > > yourself.
> > > > > > In
> > > > > > this case you need to install Ant. Let me know your
> > > > > > preference.
> > > > > > What is the version of Java you going to use?
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > I am starting the preps to have METViewer installed on
my
> > > > > > > local linux workstation. I already have Java and need to
> > > > > > > have R and MySQL installed. Anything else?
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > >
> > > > > >
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > > CLASSIFICATION: UNCLASSIFIED
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



CLASSIFICATION: UNCLASSIFIED


------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #91137] Installing METviewer (UNCLASSIFIED)
From: Raby, John W USA CIV
Time: Wed Aug 07 07:38:27 2019

Tatiana -

Another update after conducting tests this morning which were
unsuccessful in loading the gsl R package.

In the same terminal session, which maintained the env variables
settings which I used for the above testing, I tried loading the
'verification' R package and this time I did not see an error in the
dialog. The last part of the dialog is provided below:

installing to /home/jraby/R/R-3.6.1/library/00LOCK-
fields/00new/fields/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary
installation path
* DONE (fields)
* installing *source* package 'verification' ...
** package 'verification' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary
installation path
* DONE (verification)

The downloaded source packages are in
	'/home/jraby/tmp/RtmpAhPza4/downloaded_packages'
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done

R/
John
____________________________

____________
From: Raby, John W CIV USARMY CCDC ARL (USA)
Sent: Tuesday, August 06, 2019 4:39 PM
To: met_help at ucar.edu
Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer (UNCLASSIFIED)

CLASSIFICATION: UNCLASSIFIED

Tatiana -

My sysadm installed gsl-devel using the command you provided. I just
tried to load the R package, but it has the same error:

> install.packages('gsl')
--- Please select a CRAN mirror for use in this session ---
I selected 63 (USA MI)

trying URL
'https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.1-6.tar.gz'
Content type 'application/octet-stream' length 189794 bytes (185 KB)
==================================================
downloaded 185 KB

* installing *source* package 'gsl' ...
** package 'gsl' successfully unpacked and MD5 sums checked
** using staged installation
ERROR: 'configure' exists but is not executable -- see the 'R
Installation and Administration Manual'
* removing '/home/jraby/R/R-3.6.1/library/gsl'

The downloaded source packages are in
        '/tmp/RtmpFotJTN/downloaded_packages'
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages("gsl") :
  installation of package 'gsl' had non-zero exit status

R/
John



-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Tuesday, August 6, 2019 3:17 PM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

All active links contained in this email were disabled.  Please verify
the identity of the sender, and confirm the authenticity of all links
contained within the message prior to copying and pasting the address
to a Web browser.




----

I checked R gsl dependencies and it does require gsl-devel To install
gsl-devel you (or your sys admin)  need to run yum install gsl-devel

Tatiana

On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> So, gsl itself is not required in order to have a successful install
> of the R package gsl, correct?
>
> R/
> John
>
> -----Original Message-----
>  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> Sent: Tuesday, August 6, 2019 2:50 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> gsl and "R package gsl" are different libraries and are needed to be
> installed separately.
> I'm not sure that  there is a dependency between of them but if
there
> is than R gsl would depend on the standard gsl.
>
> Tatiana
>
> On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > Thanks for your guidance on resolving the issues. I will consult
> > with my sysadm and get back to you soon.
> >
> > Regards the gsl package, I read about the eclv plot and I don't
have
> > an interest at the present time. Was the loading of the gsl
package
> > supposed to do an install of the gsl? I have installed gsl as part
> > of the provisioning required prior to installing MET V5.2 on the
> > HPC. If I was able to do that on my workstation and was
successful,
> > would that alleviate the problem and allow the package to be
> > installed?
> >
> > R/
> > John
> >
> >
> >
> > -----Original Message-----
> >  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > Sent: Tuesday, August 6, 2019 2:13 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > John,
> >
> > By default, R uses the /tmp directory to install packages. The
/tmp
> > directory is often marked as “noexec”. This means that no file
under
> > /tmp can ever be executed.
> > To solve this problem you need  to set the TMPDIR environment
> > variable:
> > For csh shell:
> > mkdir ~/tmp
> > setenv TMPDIR ~/tmp
> >
> > for bash:
> > mkdir ~/tmp
> > export TMPDIR=~/tmp
> >
> > gsl package is only needed for Eclv plot. If you are not planning
to
> > create these plots you don't need to install this package.
> >
> > Tatiana
> >
> >
> >
> > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil wrote:
> > > Tatiana -
> > >
> > > Today I was able to resume the loading of the R packages you
> > > specified in an earlier email. There were issues encountered
when
> > > loading 'gsl"
> > > and 'verification'. I'm not sure where to start debugging the
> > > issues.
> > > I captured the screen dialog so you can see more specific info
> > > about them. See attached text file.
> > >
> > > The R packages which appear to have loaded successfully are:
> > > 'boot', 'plotrix', and 'data.table'
> > >
> > > What do you recommend for troubleshooting these issues?
> > >
> > > At this point, I believe that you have all the info you
requested
> > > which was provided in earlier emails.
> > >
> > > Let me know if you need additional info to proceed.
> > >
> > > Thanks.
> > >
> > > R/
> > >  John
> > >
> > >
> > >
> > >
> > > ________________________________________
> > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > To: met_help at ucar.edu
> > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > Installing METviewer (UNCLASSIFIED)
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > I'm sorry about the delay in getting back to you with an update.
> > >
> > > My workstation is fully operational now. I have not had a chance
> > > to load the remaining R packages.
> > >
> > > In answer to the questions you asked me:
> > >
> > > - database host and port. By default it is localhost:3306. Will
> > > this apply to your server?
> > >       YES
> > > - database user name and password. This is for the user that
would
> > > insert and retrieve date to/from database
> > >       ruser / whitesands
> > > - the path to Tomcat's webapp directory
> > >       /opt/tomcat7/webapp
> > > - the path where the R executables will be installed.
> > >       /home/jraby/R/R-3.6.1/bin/
> > > - path to Java. By default it is java. Will this apply to your
> > > server?
> > >       /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > - path where the METViewer
> > > executables should be located.
> > >       /home/jraby/METViewer
> > >
> > > Let me know if you need other details.
> > >
> > > R/
> > > John
> > >
> > >
> > > -----Original Message-----
> > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > Sent: Thursday, July 25, 2019 8:35 AM
> > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > Installing METviewer
> > > (UNCLASSIFIED)
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > FYI, the issue with my workstation has been resolved and I
should
> > > receive it back in my office today. I will load the remaining R
> > > packages which you listed in your earlier email. I'll have my
> > > system admin send you the info you requested last week soon.
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > Sent: Friday, July 19, 2019 3:23 PM
> > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > Installing METviewer
> > > (UNCLASSIFIED)
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > My system admin was able to change the permissions on the
library
> > > and all other directories in the install directory and I was
able
> > > to load the first R package successfully at:
> > > /home/jraby/R/R-3.6.1/library
> > >
> > > My system admin was working on obtaining the rest of the info
you
> > > requested.
> > > Unfortunately, the workstation would not complete a reboot and
> > > cannot be accessed now. He is looking into resolving that
problem
> > > now. Not sure whether the problem is connected with the
> > > installation of the new apps associated with getting the system
> > > provisioned for METViewer, but it is strangely coincident.
> > >
> > > I'll be back in touch on Monday to provide an update on the
status.
> > >
> > > Have a great weekend!
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > > From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > > Sent: Friday, July 19, 2019 12:57 PM
> > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > METviewer can work with personal libraries. Let me know the path
> > > and I add it to build.
> > > Is it /home/jraby/R/R-3.6.1/library?
> > >
> > > Tatiana
> > >
> > > On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil wrote:
> > > > Tatiana -
> > > >
> > > > Thanks for the info and guidance.
> > > >
> > > > I tried loading the R packages with user permissions, but it
> > > > can't due to an apparent permissions issue. See the following
> > > > dialog:
> > > > > install.packages('boot')
> > > > Warning in install.packages("boot") :
> > > >     'lib = "/home/jraby/R/R-3.6.1/library"' is not writable
> > > > Would you like to use a personal library instead?
> > > > (yes/No/cancel)
> > > >
> > > > If I set up a "personal" library as they suggest, will
METViewer
> > > > have an issue?
> > > >
> > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > >
> > > > My system admin is working on getting answers to the remaining
> > > > questions.
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > > ________________________________________
> > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > Hi John,
> > > > Were you able to install the additional R packages?
> > > > I can build and provide you .war file as well as other
> > > > executables.
> > > > For that, I need some parameters  to build these files:
> > > >   - database host and port. By default it is localhost:3306.
> > > > Will this apply to your server?
> > > >   - database user name and password. This is for the user that
> > > > would insert and retrieve date to/from database
> > > >   - the path to Rscript executable. By default it is just
> > > > Rscript.Will this apply to your server?
> > > > - the path to Tomcat's webapp directory
> > > > - the path where the executables will be installed.
> > > >   - path to Java. By default it is java. Will this apply to
your
> > > > server?
> > > >
> > > > Tatiana
> > > >
> > > >
> > > > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > At this time, the system admin has the following installed
on
> > > > > my
> > > > > workstation:
> > > > > MariaDB, Java, Tomcat, and R
> > > > >
> > > > > He says that a .war file is needed and that it must be
placed
> > > > > in a specific directory under Tomcat to allow the METViewer
to
> > > > > deploy.
> > > > >
> > > > > Based on this, what is the next step?
> > > > >
> > > > > Thanks.
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > >
> > > > > -----Original Message-----
> > > > > From: Tatiana Burek via RT [Caution-
mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer
> > > > >
> > > > > - METviewer will work with any version of Tomcat starting
from
> > > > > Tomcat6
> > > > > and
> > > > > ending with  Tomcat8.
> > > > > - You can install packages after R is installed.
> > > > >   - METviewer supports MariaDB. We use this setup on one of
> > > > > our servers
> > > > >   - By  modules I mean the load/batch portion of METviewer (
> > > > > the command line interface ) and the web application.
> > > > >
> > > > > The batch/load module is basically a folder with scripts and
> > > > > executables. Web application comes as a .war file that can
be
> > > > > put under Tomcat.
> > > > > Ant build script requires some setting variables and builds
> > > > > both modules OR you would give me settings and I build
modules
> > > > > for you.
> > > > >
> > > > > Tatiana
> > > > >
> > > > >
> > > > > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > My system admin has started the provisioning of my
> > > > > > workstation.
> > > > > >
> > > > > > In answer to your question about Java the following shows
> > > > > > the
> > > > > > version:
> > > > > > java -version
> > > > > > java version "1.8.0_212"
> > > > > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10) Java
> > > > > > HotSpot(TM)
> > > > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > > > >
> > > > > > Regards my preference for the running mode, I would like
to
> > > > > > use the web UI. Is there a version requirement for Tomcat?
> > > > > >
> > > > > > He has installed MariaDB (myql for RHEL7) and is currently
> > > > > > in the process of installing R. I assume that once R is
> > > > > > installed that I can install the packages you mention
below,
> > > > > > correct?
> > > > > >
> > > > > > I'm not quite sure what METViewer modules are for
answering
> > > > > > your question about whether I want to build them or have
you
> > > > > > do it.
> > > > > > Could
> > > > > > you provide more explanation or point me to where I can
read
> > > > > > more?
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Tatiana Burek via RT
> > > > > > [Caution-mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > <john.w.raby2.civ at mail.mil>
> > > > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > All active links contained in this email were disabled.
> > > > > > Please verify the identity of the sender, and confirm the
> > > > > > authenticity of all links contained within the message
prior
> > > > > > to copying and pasting the address to a Web browser.
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > ----
> > > > > >
> > > > > > Hi John,
> > > > > >     Are you planning to run METviewer using the batch mode
> > > > > > only  (from the command  line with XML configuration) or
> > > > > > with the web user interface option?
> > > > > > If you
> > > > > >    need UI you need to install Tomcat. With Tomcat only,
you
> > > > > > can  access UI using  Caution-
> > > > > > Caution-http://localhost:8080/metviewer.
> > > > > >  For  more advanced settings you need to use Apache/Tomcat
> > > > > > configurations.
> > > > > > You also need to install R packages from R console:
> > > > > > install.packages('boot')
> > > > > > install.packages('plotrix')
> > > > > > install.packages('gsl')
> > > > > > install.packages('data.table')
> > > > > > install.packages('verification')
> > > > > >
> > > > > > I can build METviewer modules for you or you can do it by
> > > > > > yourself.
> > > > > > In
> > > > > > this case you need to install Ant. Let me know your
> > > > > > preference.
> > > > > > What is the version of Java you going to use?
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > I am starting the preps to have METViewer installed on
my
> > > > > > > local linux workstation. I already have Java and need to
> > > > > > > have R and MySQL installed. Anything else?
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > >
> > > > > >
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > > CLASSIFICATION: UNCLASSIFIED
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



CLASSIFICATION: UNCLASSIFIED


------------------------------------------------
Subject: Installing METviewer
From: Tatiana Burek
Time: Wed Aug 07 09:30:43 2019

John,

I am not an expert in gsl installs and I can't replicate this problem
on our servers.
Looks like some gsl users have similar errors:
https://github.com/RobinHankin/gsl/issues/4
According to this thread the problem can be in GSL version. Pleas take
a look at the comments by user 'RobinHankin' about the multiple or old
versons.

Tatiana

On Wed Aug 07 07:28:44 2019, john.w.raby2.civ at mail.mil wrote:
> Tatiana -
>
> This morning I tried a couple of tests to see if I could load the
gsl
> R package. First, I opened a terminal and just ran the install
command
> in R as before but selected a different CRAN site for downloading
the
> package. The result was the same as the error I reported in my email
> below.
>
> Then I opened a new terminal and set the env variables you described
> in an earlier email for bash. I then attempted to install the gsl R
> package, but this time the dialog was different. Apparently it got
> past the issue which prevented execution before, and now it can't
> compile the package. See the following dialog:
>
> trying URL
> 'https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.1-
6.tar.gz'
> Content type 'application/octet-stream' length 189794 bytes (185 KB)
> ==================================================
> downloaded 185 KB
>
> * installing *source* package 'gsl' ...
> ** package 'gsl' successfully unpacked and MD5 sums checked
> ** using staged installation
> checking for gsl-config... /usr/bin/gsl-config
> checking if GSL version >= 2.1... checking for gcc... gcc
> checking whether the C compiler works... yes
> checking for C compiler default output file name... a.out
>  checking for suffix of executables...
> checking whether we are cross compiling... no
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ISO C89... none needed
> yes
> configure: creating ./config.status
> config.status: creating src/Makevars
> ** libs
> gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c airy.c
-o
> airy.o
> gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c bessel.c
> -o bessel.o
> gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
clausen.c
> -o clausen.o
> gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
coulomb.c
> -o coulomb.o
> gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
coupling.c
> -o coupling.o
> gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c dawson.c
> -o dawson.o
> gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c debye.c
-o
> debye.o
> gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c dilog.c
-o
> dilog.o
> gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c ellint.c
> -o ellint.o
> ellint.c: In function 'ellint_D_e':
> ellint.c:82:5: warning: passing argument 4 of 'gsl_sf_ellint_D_e'
> makes integer from pointer without a cast [enabled by default]
>      status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
> &result) ;
>      ^
> In file included from ellint.c:1:0:
> /usr/include/gsl/gsl_sf_ellint.h:84:5: note: expected 'gsl_mode_t'
but
> argument is of type 'struct gsl_sf_result *'
>  int gsl_sf_ellint_D_e(double phi, double k, double n, gsl_mode_t
> mode, gsl_sf_result * result);
>      ^
> ellint.c:82:5: error: too few arguments to function
> 'gsl_sf_ellint_D_e'
>      status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
> &result) ;
>      ^
> In file included from ellint.c:1:0:
> /usr/include/gsl/gsl_sf_ellint.h:84:5: note: declared here
>  int gsl_sf_ellint_D_e(double phi, double k, double n, gsl_mode_t
> mode, gsl_sf_result * result);
>      ^
> make: *** [ellint.o] Error 1
> ERROR: compilation failed for package 'gsl'
> * removing '/home/jraby/R/R-3.6.1/library/gsl'
>
> The downloaded source packages are in
>         '/home/jraby/tmp/RtmpO0i7Ze/downloaded_packages'
> Updating HTML index of packages in '.Library'
> Making 'packages.html' ... done
> Warning message:
> In install.packages("gsl") :
>   installation of package 'gsl' had non-zero exit status
>
> R/
> John
>
>
> ________________________________________
> From: Raby, John W CIV USARMY CCDC ARL (USA)
> Sent: Tuesday, August 06, 2019 4:39 PM
> To: met_help at ucar.edu
> Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer (UNCLASSIFIED)
>
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> My sysadm installed gsl-devel using the command you provided. I just
> tried to load the R package, but it has the same error:
>
> > install.packages('gsl')
> --- Please select a CRAN mirror for use in this session ---
> I selected 63 (USA MI)
>
> trying URL
> 'https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.1-
6.tar.gz'
> Content type 'application/octet-stream' length 189794 bytes (185 KB)
> ==================================================
> downloaded 185 KB
>
> * installing *source* package 'gsl' ...
> ** package 'gsl' successfully unpacked and MD5 sums checked
> ** using staged installation
> ERROR: 'configure' exists but is not executable -- see the 'R
> Installation and Administration Manual'
> * removing '/home/jraby/R/R-3.6.1/library/gsl'
>
> The downloaded source packages are in
>         '/tmp/RtmpFotJTN/downloaded_packages'
> Updating HTML index of packages in '.Library'
> Making 'packages.html' ... done
> Warning message:
> In install.packages("gsl") :
>   installation of package 'gsl' had non-zero exit status
>
> R/
> John
>
>
>
> -----Original Message-----
> From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> Sent: Tuesday, August 6, 2019 3:17 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> All active links contained in this email were disabled.  Please
verify
> the identity of the sender, and confirm the authenticity of all
links
> contained within the message prior to copying and pasting the
address
> to a Web browser.
>
>
>
>
> ----
>
> I checked R gsl dependencies and it does require gsl-devel To
install
> gsl-devel you (or your sys admin)  need to run yum install gsl-devel
>
> Tatiana
>
> On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > So, gsl itself is not required in order to have a successful
install
> > of the R package gsl, correct?
> >
> > R/
> > John
> >
> > -----Original Message-----
> >  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > Sent: Tuesday, August 6, 2019 2:50 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > gsl and "R package gsl" are different libraries and are needed to
be
> > installed separately.
> > I'm not sure that  there is a dependency between of them but if
there
> > is than R gsl would depend on the standard gsl.
> >
> > Tatiana
> >
> > On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > Thanks for your guidance on resolving the issues. I will consult
> > > with my sysadm and get back to you soon.
> > >
> > > Regards the gsl package, I read about the eclv plot and I don't
> > > have
> > > an interest at the present time. Was the loading of the gsl
package
> > > supposed to do an install of the gsl? I have installed gsl as
part
> > > of the provisioning required prior to installing MET V5.2 on the
> > > HPC. If I was able to do that on my workstation and was
successful,
> > > would that alleviate the problem and allow the package to be
> > > installed?
> > >
> > > R/
> > > John
> > >
> > >
> > >
> > > -----Original Message-----
> > >  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > > Sent: Tuesday, August 6, 2019 2:13 PM
> > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > John,
> > >
> > > By default, R uses the /tmp directory to install packages. The
/tmp
> > > directory is often marked as “noexec”. This means that no file
> > > under
> > > /tmp can ever be executed.
> > > To solve this problem you need  to set the TMPDIR environment
> > > variable:
> > > For csh shell:
> > > mkdir ~/tmp
> > > setenv TMPDIR ~/tmp
> > >
> > > for bash:
> > > mkdir ~/tmp
> > > export TMPDIR=~/tmp
> > >
> > > gsl package is only needed for Eclv plot. If you are not
planning
> > > to
> > > create these plots you don't need to install this package.
> > >
> > > Tatiana
> > >
> > >
> > >
> > > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil wrote:
> > > > Tatiana -
> > > >
> > > > Today I was able to resume the loading of the R packages you
> > > > specified in an earlier email. There were issues encountered
when
> > > > loading 'gsl"
> > > > and 'verification'. I'm not sure where to start debugging the
> > > > issues.
> > > > I captured the screen dialog so you can see more specific info
> > > > about them. See attached text file.
> > > >
> > > > The R packages which appear to have loaded successfully are:
> > > > 'boot', 'plotrix', and 'data.table'
> > > >
> > > > What do you recommend for troubleshooting these issues?
> > > >
> > > > At this point, I believe that you have all the info you
requested
> > > > which was provided in earlier emails.
> > > >
> > > > Let me know if you need additional info to proceed.
> > > >
> > > > Thanks.
> > > >
> > > > R/
> > > >  John
> > > >
> > > >
> > > >
> > > >
> > > > ________________________________________
> > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > > To: met_help at ucar.edu
> > > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > Installing METviewer (UNCLASSIFIED)
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > I'm sorry about the delay in getting back to you with an
update.
> > > >
> > > > My workstation is fully operational now. I have not had a
chance
> > > > to load the remaining R packages.
> > > >
> > > > In answer to the questions you asked me:
> > > >
> > > > - database host and port. By default it is localhost:3306.
Will
> > > > this apply to your server?
> > > >       YES
> > > > - database user name and password. This is for the user that
> > > > would
> > > > insert and retrieve date to/from database
> > > >       ruser / whitesands
> > > > - the path to Tomcat's webapp directory
> > > >       /opt/tomcat7/webapp
> > > > - the path where the R executables will be installed.
> > > >       /home/jraby/R/R-3.6.1/bin/
> > > > - path to Java. By default it is java. Will this apply to your
> > > > server?
> > > >       /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > > - path where the METViewer
> > > > executables should be located.
> > > >       /home/jraby/METViewer
> > > >
> > > > Let me know if you need other details.
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > > -----Original Message-----
> > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > Sent: Thursday, July 25, 2019 8:35 AM
> > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > Installing METviewer
> > > > (UNCLASSIFIED)
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > FYI, the issue with my workstation has been resolved and I
should
> > > > receive it back in my office today. I will load the remaining
R
> > > > packages which you listed in your earlier email. I'll have my
> > > > system admin send you the info you requested last week soon.
> > > >
> > > > R/
> > > > John
> > > >
> > > > -----Original Message-----
> > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > Sent: Friday, July 19, 2019 3:23 PM
> > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > Installing METviewer
> > > > (UNCLASSIFIED)
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > My system admin was able to change the permissions on the
library
> > > > and all other directories in the install directory and I was
able
> > > > to load the first R package successfully at:
> > > > /home/jraby/R/R-3.6.1/library
> > > >
> > > > My system admin was working on obtaining the rest of the info
you
> > > > requested.
> > > > Unfortunately, the workstation would not complete a reboot and
> > > > cannot be accessed now. He is looking into resolving that
problem
> > > > now. Not sure whether the problem is connected with the
> > > > installation of the new apps associated with getting the
system
> > > > provisioned for METViewer, but it is strangely coincident.
> > > >
> > > > I'll be back in touch on Monday to provide an update on the
> > > > status.
> > > >
> > > > Have a great weekend!
> > > >
> > > > R/
> > > > John
> > > >
> > > > -----Original Message-----
> > > > From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > > > Sent: Friday, July 19, 2019 12:57 PM
> > > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > METviewer can work with personal libraries. Let me know the
path
> > > > and I add it to build.
> > > > Is it /home/jraby/R/R-3.6.1/library?
> > > >
> > > > Tatiana
> > > >
> > > > On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > Tatiana -
> > > > >
> > > > > Thanks for the info and guidance.
> > > > >
> > > > > I tried loading the R packages with user permissions, but it
> > > > > can't due to an apparent permissions issue. See the
following
> > > > > dialog:
> > > > > > install.packages('boot')
> > > > > Warning in install.packages("boot") :
> > > > >     'lib = "/home/jraby/R/R-3.6.1/library"' is not writable
> > > > > Would you like to use a personal library instead?
> > > > > (yes/No/cancel)
> > > > >
> > > > > If I set up a "personal" library as they suggest, will
> > > > > METViewer
> > > > > have an issue?
> > > > >
> > > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > > >
> > > > > My system admin is working on getting answers to the
remaining
> > > > > questions.
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > >
> > > > > ________________________________________
> > > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > > METviewer
> > > > >
> > > > > Hi John,
> > > > > Were you able to install the additional R packages?
> > > > > I can build and provide you .war file as well as other
> > > > > executables.
> > > > > For that, I need some parameters  to build these files:
> > > > >   - database host and port. By default it is localhost:3306.
> > > > > Will this apply to your server?
> > > > >   - database user name and password. This is for the user
that
> > > > > would insert and retrieve date to/from database
> > > > >   - the path to Rscript executable. By default it is just
> > > > > Rscript.Will this apply to your server?
> > > > > - the path to Tomcat's webapp directory
> > > > > - the path where the executables will be installed.
> > > > >   - path to Java. By default it is java. Will this apply to
> > > > > your
> > > > > server?
> > > > >
> > > > > Tatiana
> > > > >
> > > > >
> > > > > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > At this time, the system admin has the following installed
on
> > > > > > my
> > > > > > workstation:
> > > > > > MariaDB, Java, Tomcat, and R
> > > > > >
> > > > > > He says that a .war file is needed and that it must be
placed
> > > > > > in a specific directory under Tomcat to allow the
METViewer
> > > > > > to
> > > > > > deploy.
> > > > > >
> > > > > > Based on this, what is the next step?
> > > > > >
> > > > > > Thanks.
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Tatiana Burek via RT [Caution-
mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > <john.w.raby2.civ at mail.mil>
> > > > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > - METviewer will work with any version of Tomcat starting
> > > > > > from
> > > > > > Tomcat6
> > > > > > and
> > > > > > ending with  Tomcat8.
> > > > > > - You can install packages after R is installed.
> > > > > >   - METviewer supports MariaDB. We use this setup on one
of
> > > > > > our servers
> > > > > >   - By  modules I mean the load/batch portion of METviewer
(
> > > > > > the command line interface ) and the web application.
> > > > > >
> > > > > > The batch/load module is basically a folder with scripts
and
> > > > > > executables. Web application comes as a .war file that can
be
> > > > > > put under Tomcat.
> > > > > > Ant build script requires some setting variables and
builds
> > > > > > both modules OR you would give me settings and I build
> > > > > > modules
> > > > > > for you.
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > >
> > > > > > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > > Tatiana -
> > > > > > >
> > > > > > > My system admin has started the provisioning of my
> > > > > > > workstation.
> > > > > > >
> > > > > > > In answer to your question about Java the following
shows
> > > > > > > the
> > > > > > > version:
> > > > > > > java -version
> > > > > > > java version "1.8.0_212"
> > > > > > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10)
Java
> > > > > > > HotSpot(TM)
> > > > > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > > > > >
> > > > > > > Regards my preference for the running mode, I would like
to
> > > > > > > use the web UI. Is there a version requirement for
Tomcat?
> > > > > > >
> > > > > > > He has installed MariaDB (myql for RHEL7) and is
currently
> > > > > > > in the process of installing R. I assume that once R is
> > > > > > > installed that I can install the packages you mention
> > > > > > > below,
> > > > > > > correct?
> > > > > > >
> > > > > > > I'm not quite sure what METViewer modules are for
answering
> > > > > > > your question about whether I want to build them or have
> > > > > > > you
> > > > > > > do it.
> > > > > > > Could
> > > > > > > you provide more explanation or point me to where I can
> > > > > > > read
> > > > > > > more?
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Tatiana Burek via RT
> > > > > > > [Caution-mailto:met_help at ucar.edu]
> > > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > Installing METviewer
> > > > > > >
> > > > > > > All active links contained in this email were disabled.
> > > > > > > Please verify the identity of the sender, and confirm
the
> > > > > > > authenticity of all links contained within the message
> > > > > > > prior
> > > > > > > to copying and pasting the address to a Web browser.
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > ----
> > > > > > >
> > > > > > > Hi John,
> > > > > > >     Are you planning to run METviewer using the batch
mode
> > > > > > > only  (from the command  line with XML configuration) or
> > > > > > > with the web user interface option?
> > > > > > > If you
> > > > > > >    need UI you need to install Tomcat. With Tomcat only,
> > > > > > > you
> > > > > > > can  access UI using  Caution-
> > > > > > > Caution-http://localhost:8080/metviewer.
> > > > > > >  For  more advanced settings you need to use
Apache/Tomcat
> > > > > > > configurations.
> > > > > > > You also need to install R packages from R console:
> > > > > > > install.packages('boot')
> > > > > > > install.packages('plotrix')
> > > > > > > install.packages('gsl')
> > > > > > > install.packages('data.table')
> > > > > > > install.packages('verification')
> > > > > > >
> > > > > > > I can build METviewer modules for you or you can do it
by
> > > > > > > yourself.
> > > > > > > In
> > > > > > > this case you need to install Ant. Let me know your
> > > > > > > preference.
> > > > > > > What is the version of Java you going to use?
> > > > > > >
> > > > > > > Tatiana
> > > > > > >
> > > > > > > Tatiana
> > > > > > >
> > > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > > I am starting the preps to have METViewer installed on
my
> > > > > > > > local linux workstation. I already have Java and need
to
> > > > > > > > have R and MySQL installed. Anything else?
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > >
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > > > CLASSIFICATION: UNCLASSIFIED
> > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



------------------------------------------------
Subject: Installing METviewer
From: Raby, John W USA CIV
Time: Wed Aug 07 09:46:16 2019

CLASSIFICATION: UNCLASSIFIED

Tatiana -

Thanks for taking a look at the error anyway. Do you have a choice
which gsl version gets installed? The loading of the R package
apparently prescribes what version is installed. Is this your
understanding?

If I had the option of independently installing a different gsl
version myself and was lucky enough to get a version which
successfully compiles, would it be possible to have R use this version
for the loading of the gsl package?

Can  I proceed with installing METViewer  despite not having the gsl
package loaded?

R/
John

-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Wednesday, August 7, 2019 9:31 AM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

All active links contained in this email were disabled.  Please verify
the identity of the sender, and confirm the authenticity of all links
contained within the message prior to copying and pasting the address
to a Web browser.




----

John,

I am not an expert in gsl installs and I can't replicate this problem
on our servers.
Looks like some gsl users have similar errors:
Caution-https://github.com/RobinHankin/gsl/issues/4
According to this thread the problem can be in GSL version. Pleas take
a look at the comments by user 'RobinHankin' about the multiple or old
versons.

Tatiana

On Wed Aug 07 07:28:44 2019, john.w.raby2.civ at mail.mil wrote:
> Tatiana -
>
> This morning I tried a couple of tests to see if I could load the
gsl
> R package. First, I opened a terminal and just ran the install
command
> in R as before but selected a different CRAN site for downloading
the
> package. The result was the same as the error I reported in my email
> below.
>
> Then I opened a new terminal and set the env variables you described
> in an earlier email for bash. I then attempted to install the gsl R
> package, but this time the dialog was different. Apparently it got
> past the issue which prevented execution before, and now it can't
> compile the package. See the following dialog:
>
> trying URL
> 'Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.1-6.tar.gz'
> Content type 'application/octet-stream' length 189794 bytes (185 KB)
> ==================================================
> downloaded 185 KB
>
> * installing *source* package 'gsl' ...
> ** package 'gsl' successfully unpacked and MD5 sums checked
> ** using staged installation
> checking for gsl-config... /usr/bin/gsl-config checking if GSL
version
> >= 2.1... checking for gcc... gcc checking whether the C compiler
> works... yes checking for C compiler default output file name...
a.out
> checking for suffix of executables...
> checking whether we are cross compiling... no checking for suffix of
> object files... o checking whether we are using the GNU C
compiler...
> yes checking whether gcc accepts -g... yes checking for gcc option
to
> accept ISO C89... none needed yes
> configure: creating ./config.status
> config.status: creating src/Makevars
> ** libs
> gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c airy.c
-o
> airy.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c bessel.c
> -o bessel.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
-DNDEBUG
> -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
clausen.c
> -o clausen.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
-DNDEBUG
> -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
coulomb.c
> -o coulomb.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
-DNDEBUG
> -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
coupling.c
> -o coupling.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
> -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> dawson.c -o dawson.o gcc -std=gnu99 -I"/home/jraby/R/R-
3.6.1/include"
> -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> debye.c -o debye.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
> -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> dilog.c -o dilog.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
> -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> ellint.c -o ellint.o
> ellint.c: In function 'ellint_D_e':
> ellint.c:82:5: warning: passing argument 4 of 'gsl_sf_ellint_D_e'
> makes integer from pointer without a cast [enabled by default]
>      status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
> &result) ;
>      ^
> In file included from ellint.c:1:0:
> /usr/include/gsl/gsl_sf_ellint.h:84:5: note: expected 'gsl_mode_t'
but
> argument is of type 'struct gsl_sf_result *'
>  int gsl_sf_ellint_D_e(double phi, double k, double n, gsl_mode_t
> mode, gsl_sf_result * result);
>      ^
> ellint.c:82:5: error: too few arguments to function
> 'gsl_sf_ellint_D_e'
>      status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
> &result) ;
>      ^
> In file included from ellint.c:1:0:
> /usr/include/gsl/gsl_sf_ellint.h:84:5: note: declared here  int
> gsl_sf_ellint_D_e(double phi, double k, double n, gsl_mode_t mode,
> gsl_sf_result * result);
>      ^
> make: *** [ellint.o] Error 1
> ERROR: compilation failed for package 'gsl'
> * removing '/home/jraby/R/R-3.6.1/library/gsl'
>
> The downloaded source packages are in
>         '/home/jraby/tmp/RtmpO0i7Ze/downloaded_packages'
> Updating HTML index of packages in '.Library'
> Making 'packages.html' ... done
> Warning message:
> In install.packages("gsl") :
>   installation of package 'gsl' had non-zero exit status
>
> R/
> John
>
>
> ________________________________________
> From: Raby, John W CIV USARMY CCDC ARL (USA)
> Sent: Tuesday, August 06, 2019 4:39 PM
> To: met_help at ucar.edu
> Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer (UNCLASSIFIED)
>
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> My sysadm installed gsl-devel using the command you provided. I just
> tried to load the R package, but it has the same error:
>
> > install.packages('gsl')
> --- Please select a CRAN mirror for use in this session --- I
selected
> 63 (USA MI)
>
> trying URL
> 'Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.1-6.tar.gz'
> Content type 'application/octet-stream' length 189794 bytes (185 KB)
> ==================================================
> downloaded 185 KB
>
> * installing *source* package 'gsl' ...
> ** package 'gsl' successfully unpacked and MD5 sums checked
> ** using staged installation
> ERROR: 'configure' exists but is not executable -- see the 'R
> Installation and Administration Manual'
> * removing '/home/jraby/R/R-3.6.1/library/gsl'
>
> The downloaded source packages are in
>         '/tmp/RtmpFotJTN/downloaded_packages'
> Updating HTML index of packages in '.Library'
> Making 'packages.html' ... done
> Warning message:
> In install.packages("gsl") :
>   installation of package 'gsl' had non-zero exit status
>
> R/
> John
>
>
>
> -----Original Message-----
> From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> Sent: Tuesday, August 6, 2019 3:17 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> All active links contained in this email were disabled.  Please
verify
> the identity of the sender, and confirm the authenticity of all
links
> contained within the message prior to copying and pasting the
address
> to a Web browser.
>
>
>
>
> ----
>
> I checked R gsl dependencies and it does require gsl-devel To
install
> gsl-devel you (or your sys admin)  need to run yum install gsl-devel
>
> Tatiana
>
> On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > So, gsl itself is not required in order to have a successful
install
> > of the R package gsl, correct?
> >
> > R/
> > John
> >
> > -----Original Message-----
> >  From: Tatiana Burek via RT
> > [Caution-Caution-mailto:met_help at ucar.edu]
> > Sent: Tuesday, August 6, 2019 2:50 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> > Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > gsl and "R package gsl" are different libraries and are needed to
be
> > installed separately.
> > I'm not sure that  there is a dependency between of them but if
> > there is than R gsl would depend on the standard gsl.
> >
> > Tatiana
> >
> > On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > Thanks for your guidance on resolving the issues. I will consult
> > > with my sysadm and get back to you soon.
> > >
> > > Regards the gsl package, I read about the eclv plot and I don't
> > > have an interest at the present time. Was the loading of the gsl
> > > package supposed to do an install of the gsl? I have installed
gsl
> > > as part of the provisioning required prior to installing MET
V5.2
> > > on the HPC. If I was able to do that on my workstation and was
> > > successful, would that alleviate the problem and allow the
package
> > > to be installed?
> > >
> > > R/
> > > John
> > >
> > >
> > >
> > > -----Original Message-----
> > >  From: Tatiana Burek via RT
> > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > Sent: Tuesday, August 6, 2019 2:13 PM
> > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > John,
> > >
> > > By default, R uses the /tmp directory to install packages. The
> > > /tmp directory is often marked as “noexec”. This means that no
> > > file under /tmp can ever be executed.
> > > To solve this problem you need  to set the TMPDIR environment
> > > variable:
> > > For csh shell:
> > > mkdir ~/tmp
> > > setenv TMPDIR ~/tmp
> > >
> > > for bash:
> > > mkdir ~/tmp
> > > export TMPDIR=~/tmp
> > >
> > > gsl package is only needed for Eclv plot. If you are not
planning
> > > to create these plots you don't need to install this package.
> > >
> > > Tatiana
> > >
> > >
> > >
> > > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil wrote:
> > > > Tatiana -
> > > >
> > > > Today I was able to resume the loading of the R packages you
> > > > specified in an earlier email. There were issues encountered
> > > > when loading 'gsl"
> > > > and 'verification'. I'm not sure where to start debugging the
> > > > issues.
> > > > I captured the screen dialog so you can see more specific info
> > > > about them. See attached text file.
> > > >
> > > > The R packages which appear to have loaded successfully are:
> > > > 'boot', 'plotrix', and 'data.table'
> > > >
> > > > What do you recommend for troubleshooting these issues?
> > > >
> > > > At this point, I believe that you have all the info you
> > > > requested which was provided in earlier emails.
> > > >
> > > > Let me know if you need additional info to proceed.
> > > >
> > > > Thanks.
> > > >
> > > > R/
> > > >  John
> > > >
> > > >
> > > >
> > > >
> > > > ________________________________________
> > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > > To: met_help at ucar.edu
> > > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > Installing METviewer (UNCLASSIFIED)
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > I'm sorry about the delay in getting back to you with an
update.
> > > >
> > > > My workstation is fully operational now. I have not had a
chance
> > > > to load the remaining R packages.
> > > >
> > > > In answer to the questions you asked me:
> > > >
> > > > - database host and port. By default it is localhost:3306.
Will
> > > > this apply to your server?
> > > >       YES
> > > > - database user name and password. This is for the user that
> > > > would insert and retrieve date to/from database
> > > >       ruser / whitesands
> > > > - the path to Tomcat's webapp directory
> > > >       /opt/tomcat7/webapp
> > > > - the path where the R executables will be installed.
> > > >       /home/jraby/R/R-3.6.1/bin/
> > > > - path to Java. By default it is java. Will this apply to your
> > > > server?
> > > >       /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > > - path where the METViewer
> > > > executables should be located.
> > > >       /home/jraby/METViewer
> > > >
> > > > Let me know if you need other details.
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > > -----Original Message-----
> > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > Sent: Thursday, July 25, 2019 8:35 AM
> > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > Installing METviewer
> > > > (UNCLASSIFIED)
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > FYI, the issue with my workstation has been resolved and I
> > > > should receive it back in my office today. I will load the
> > > > remaining R packages which you listed in your earlier email.
> > > > I'll have my system admin send you the info you requested last
week soon.
> > > >
> > > > R/
> > > > John
> > > >
> > > > -----Original Message-----
> > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > Sent: Friday, July 19, 2019 3:23 PM
> > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > Installing METviewer
> > > > (UNCLASSIFIED)
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > My system admin was able to change the permissions on the
> > > > library and all other directories in the install directory and
I
> > > > was able to load the first R package successfully at:
> > > > /home/jraby/R/R-3.6.1/library
> > > >
> > > > My system admin was working on obtaining the rest of the info
> > > > you requested.
> > > > Unfortunately, the workstation would not complete a reboot and
> > > > cannot be accessed now. He is looking into resolving that
> > > > problem now. Not sure whether the problem is connected with
the
> > > > installation of the new apps associated with getting the
system
> > > > provisioned for METViewer, but it is strangely coincident.
> > > >
> > > > I'll be back in touch on Monday to provide an update on the
> > > > status.
> > > >
> > > > Have a great weekend!
> > > >
> > > > R/
> > > > John
> > > >
> > > > -----Original Message-----
> > > > From: Tatiana Burek via RT
> > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > Sent: Friday, July 19, 2019 12:57 PM
> > > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > METviewer can work with personal libraries. Let me know the
path
> > > > and I add it to build.
> > > > Is it /home/jraby/R/R-3.6.1/library?
> > > >
> > > > Tatiana
> > > >
> > > > On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > Tatiana -
> > > > >
> > > > > Thanks for the info and guidance.
> > > > >
> > > > > I tried loading the R packages with user permissions, but it
> > > > > can't due to an apparent permissions issue. See the
following
> > > > > dialog:
> > > > > > install.packages('boot')
> > > > > Warning in install.packages("boot") :
> > > > >     'lib = "/home/jraby/R/R-3.6.1/library"' is not writable
> > > > > Would you like to use a personal library instead?
> > > > > (yes/No/cancel)
> > > > >
> > > > > If I set up a "personal" library as they suggest, will
> > > > > METViewer have an issue?
> > > > >
> > > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > > >
> > > > > My system admin is working on getting answers to the
remaining
> > > > > questions.
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > >
> > > > > ________________________________________
> > > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer
> > > > >
> > > > > Hi John,
> > > > > Were you able to install the additional R packages?
> > > > > I can build and provide you .war file as well as other
> > > > > executables.
> > > > > For that, I need some parameters  to build these files:
> > > > >   - database host and port. By default it is localhost:3306.
> > > > > Will this apply to your server?
> > > > >   - database user name and password. This is for the user
that
> > > > > would insert and retrieve date to/from database
> > > > >   - the path to Rscript executable. By default it is just
> > > > > Rscript.Will this apply to your server?
> > > > > - the path to Tomcat's webapp directory
> > > > > - the path where the executables will be installed.
> > > > >   - path to Java. By default it is java. Will this apply to
> > > > > your server?
> > > > >
> > > > > Tatiana
> > > > >
> > > > >
> > > > > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > At this time, the system admin has the following installed
> > > > > > on my
> > > > > > workstation:
> > > > > > MariaDB, Java, Tomcat, and R
> > > > > >
> > > > > > He says that a .war file is needed and that it must be
> > > > > > placed in a specific directory under Tomcat to allow the
> > > > > > METViewer to deploy.
> > > > > >
> > > > > > Based on this, what is the next step?
> > > > > >
> > > > > > Thanks.
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Tatiana Burek via RT
> > > > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > <john.w.raby2.civ at mail.mil>
> > > > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > - METviewer will work with any version of Tomcat starting
> > > > > > from
> > > > > > Tomcat6
> > > > > > and
> > > > > > ending with  Tomcat8.
> > > > > > - You can install packages after R is installed.
> > > > > >   - METviewer supports MariaDB. We use this setup on one
of
> > > > > > our servers
> > > > > >   - By  modules I mean the load/batch portion of METviewer
(
> > > > > > the command line interface ) and the web application.
> > > > > >
> > > > > > The batch/load module is basically a folder with scripts
and
> > > > > > executables. Web application comes as a .war file that can
> > > > > > be put under Tomcat.
> > > > > > Ant build script requires some setting variables and
builds
> > > > > > both modules OR you would give me settings and I build
> > > > > > modules for you.
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > >
> > > > > > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > > Tatiana -
> > > > > > >
> > > > > > > My system admin has started the provisioning of my
> > > > > > > workstation.
> > > > > > >
> > > > > > > In answer to your question about Java the following
shows
> > > > > > > the
> > > > > > > version:
> > > > > > > java -version
> > > > > > > java version "1.8.0_212"
> > > > > > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10)
Java
> > > > > > > HotSpot(TM)
> > > > > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > > > > >
> > > > > > > Regards my preference for the running mode, I would like
> > > > > > > to use the web UI. Is there a version requirement for
Tomcat?
> > > > > > >
> > > > > > > He has installed MariaDB (myql for RHEL7) and is
currently
> > > > > > > in the process of installing R. I assume that once R is
> > > > > > > installed that I can install the packages you mention
> > > > > > > below, correct?
> > > > > > >
> > > > > > > I'm not quite sure what METViewer modules are for
> > > > > > > answering your question about whether I want to build
them
> > > > > > > or have you do it.
> > > > > > > Could
> > > > > > > you provide more explanation or point me to where I can
> > > > > > > read more?
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Tatiana Burek via RT
> > > > > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > Installing METviewer
> > > > > > >
> > > > > > > All active links contained in this email were disabled.
> > > > > > > Please verify the identity of the sender, and confirm
the
> > > > > > > authenticity of all links contained within the message
> > > > > > > prior to copying and pasting the address to a Web
browser.
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > ----
> > > > > > >
> > > > > > > Hi John,
> > > > > > >     Are you planning to run METviewer using the batch
mode
> > > > > > > only  (from the command  line with XML configuration) or
> > > > > > > with the web user interface option?
> > > > > > > If you
> > > > > > >    need UI you need to install Tomcat. With Tomcat only,
> > > > > > > you can  access UI using  Caution-
> > > > > > > Caution-Caution-http://localhost:8080/metviewer.
> > > > > > >  For  more advanced settings you need to use
Apache/Tomcat
> > > > > > > configurations.
> > > > > > > You also need to install R packages from R console:
> > > > > > > install.packages('boot')
> > > > > > > install.packages('plotrix')
> > > > > > > install.packages('gsl')
> > > > > > > install.packages('data.table')
> > > > > > > install.packages('verification')
> > > > > > >
> > > > > > > I can build METviewer modules for you or you can do it
by
> > > > > > > yourself.
> > > > > > > In
> > > > > > > this case you need to install Ant. Let me know your
> > > > > > > preference.
> > > > > > > What is the version of Java you going to use?
> > > > > > >
> > > > > > > Tatiana
> > > > > > >
> > > > > > > Tatiana
> > > > > > >
> > > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > > I am starting the preps to have METViewer installed on
> > > > > > > > my local linux workstation. I already have Java and
need
> > > > > > > > to have R and MySQL installed. Anything else?
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > >
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > > > CLASSIFICATION: UNCLASSIFIED
> > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



CLASSIFICATION: UNCLASSIFIED

------------------------------------------------
Subject: Installing METviewer
From: Tatiana Burek
Time: Wed Aug 07 11:19:58 2019

you can install METviewer without gsl package.


Tatiana
On Wed Aug 07 09:46:16 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> Thanks for taking a look at the error anyway. Do you have a choice
> which gsl version gets installed? The loading of the R package
> apparently prescribes what version is installed. Is this your
> understanding?
>
> If I had the option of independently installing a different gsl
> version myself and was lucky enough to get a version which
> successfully compiles, would it be possible to have R use this
version
> for the loading of the gsl package?
>
> Can  I proceed with installing METViewer  despite not having the gsl
> package loaded?
>
> R/
> John
>
> -----Original Message-----
>  From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> Sent: Wednesday, August 7, 2019 9:31 AM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> All active links contained in this email were disabled.  Please
verify
> the identity of the sender, and confirm the authenticity of all
links
> contained within the message prior to copying and pasting the
address
> to a Web browser.
>
>
>
>
> ----
>
> John,
>
> I am not an expert in gsl installs and I can't replicate this
problem
> on our servers.
> Looks like some gsl users have similar errors:
> Caution-https://github.com/RobinHankin/gsl/issues/4
> According to this thread the problem can be in GSL version. Pleas
take
> a look at the comments by user 'RobinHankin' about the multiple or
old
> versons.
>
> Tatiana
>
> On Wed Aug 07 07:28:44 2019, john.w.raby2.civ at mail.mil wrote:
> > Tatiana -
> >
> > This morning I tried a couple of tests to see if I could load the
gsl
> > R package. First, I opened a terminal and just ran the install
> > command
> > in R as before but selected a different CRAN site for downloading
the
> > package. The result was the same as the error I reported in my
email
> > below.
> >
> > Then I opened a new terminal and set the env variables you
described
> > in an earlier email for bash. I then attempted to install the gsl
R
> > package, but this time the dialog was different. Apparently it got
> > past the issue which prevented execution before, and now it can't
> > compile the package. See the following dialog:
> >
> > trying URL
> > 'Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.1-
> > 6.tar.gz'
> >  Content type 'application/octet-stream' length 189794 bytes (185
KB)
> > ==================================================
> > downloaded 185 KB
> >
> > * installing *source* package 'gsl' ...
> > ** package 'gsl' successfully unpacked and MD5 sums checked
> > ** using staged installation
> >  checking for gsl-config... /usr/bin/gsl-config checking if GSL
> > version
> > > = 2.1... checking for gcc... gcc checking whether the C compiler
> > works... yes checking for C compiler default output file name...
> > a.out
> > checking for suffix of executables...
> > checking whether we are cross compiling... no checking for suffix
of
> > object files... o checking whether we are using the GNU C
compiler...
> > yes checking whether gcc accepts -g... yes checking for gcc option
to
> > accept ISO C89... none needed yes
> > configure: creating ./config.status
> > config.status: creating src/Makevars
> > ** libs
> > gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> > -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c airy.c
-o
> > airy.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> > -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
bessel.c
> > -o bessel.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
-DNDEBUG
> > -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
clausen.c
> > -o clausen.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
> > -DNDEBUG
> > -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
coulomb.c
> > -o coulomb.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
> > -DNDEBUG
> > -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> > coupling.c
> > -o coupling.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
> > -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2
-c
> > dawson.c -o dawson.o gcc -std=gnu99 -I"/home/jraby/R/R-
3.6.1/include"
> > -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2
-c
> > debye.c -o debye.o gcc -std=gnu99 -I"/home/jraby/R/R-
3.6.1/include"
> > -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2
-c
> > dilog.c -o dilog.o gcc -std=gnu99 -I"/home/jraby/R/R-
3.6.1/include"
> > -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2
-c
> > ellint.c -o ellint.o
> > ellint.c: In function 'ellint_D_e':
> > ellint.c:82:5: warning: passing argument 4 of 'gsl_sf_ellint_D_e'
> > makes integer from pointer without a cast [enabled by default]
> >    status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
> > &result) ;
> >    ^
> > In file included from ellint.c:1:0:
> > /usr/include/gsl/gsl_sf_ellint.h:84:5: note: expected 'gsl_mode_t'
> > but
> > argument is of type 'struct gsl_sf_result *'
> > int gsl_sf_ellint_D_e(double phi, double k, double n, gsl_mode_t
> > mode, gsl_sf_result * result);
> >    ^
> > ellint.c:82:5: error: too few arguments to function
> > 'gsl_sf_ellint_D_e'
> >    status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
> > &result) ;
> >    ^
> > In file included from ellint.c:1:0:
> > /usr/include/gsl/gsl_sf_ellint.h:84:5: note: declared here  int
> > gsl_sf_ellint_D_e(double phi, double k, double n, gsl_mode_t mode,
> > gsl_sf_result * result);
> >    ^
> > make: *** [ellint.o] Error 1
> > ERROR: compilation failed for package 'gsl'
> > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> >
> > The downloaded source packages are in
> >         '/home/jraby/tmp/RtmpO0i7Ze/downloaded_packages'
> > Updating HTML index of packages in '.Library'
> > Making 'packages.html' ... done
> > Warning message:
> > In install.packages("gsl") :
> >   installation of package 'gsl' had non-zero exit status
> >
> > R/
> > John
> >
> >
> > ________________________________________
> > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > Sent: Tuesday, August 06, 2019 4:39 PM
> > To: met_help at ucar.edu
> >  Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer (UNCLASSIFIED)
> >
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > My sysadm installed gsl-devel using the command you provided. I
just
> > tried to load the R package, but it has the same error:
> >
> > > install.packages('gsl')
> > --- Please select a CRAN mirror for use in this session --- I
> > selected
> > 63 (USA MI)
> >
> > trying URL
> > 'Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.1-
> > 6.tar.gz'
> >  Content type 'application/octet-stream' length 189794 bytes (185
KB)
> > ==================================================
> > downloaded 185 KB
> >
> > * installing *source* package 'gsl' ...
> > ** package 'gsl' successfully unpacked and MD5 sums checked
> > ** using staged installation
> >  ERROR: 'configure' exists but is not executable -- see the 'R
> > Installation and Administration Manual'
> > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> >
> > The downloaded source packages are in
> >         '/tmp/RtmpFotJTN/downloaded_packages'
> > Updating HTML index of packages in '.Library'
> > Making 'packages.html' ... done
> > Warning message:
> > In install.packages("gsl") :
> >   installation of package 'gsl' had non-zero exit status
> >
> > R/
> > John
> >
> >
> >
> > -----Original Message-----
> > From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > Sent: Tuesday, August 6, 2019 3:17 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > All active links contained in this email were disabled.  Please
> > verify
> > the identity of the sender, and confirm the authenticity of all
links
> > contained within the message prior to copying and pasting the
address
> > to a Web browser.
> >
> >
> >
> >
> > ----
> >
> > I checked R gsl dependencies and it does require gsl-devel To
install
> > gsl-devel you (or your sys admin)  need to run yum install gsl-
devel
> >
> > Tatiana
> >
> > On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > So, gsl itself is not required in order to have a successful
> > > install
> > > of the R package gsl, correct?
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > >   From: Tatiana Burek via RT
> > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > Sent: Tuesday, August 6, 2019 2:50 PM
> > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > gsl and "R package gsl" are different libraries and are needed
to
> > > be
> > > installed separately.
> > > I'm not sure that  there is a dependency between of them but if
> > > there is than R gsl would depend on the standard gsl.
> > >
> > > Tatiana
> > >
> > > On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil wrote:
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > Thanks for your guidance on resolving the issues. I will
consult
> > > > with my sysadm and get back to you soon.
> > > >
> > > > Regards the gsl package, I read about the eclv plot and I
don't
> > > > have an interest at the present time. Was the loading of the
gsl
> > > > package supposed to do an install of the gsl? I have installed
> > > > gsl
> > > > as part of the provisioning required prior to installing MET
V5.2
> > > > on the HPC. If I was able to do that on my workstation and was
> > > > successful, would that alleviate the problem and allow the
> > > > package
> > > > to be installed?
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > >
> > > > -----Original Message-----
> > > >   From: Tatiana Burek via RT
> > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > Sent: Tuesday, August 6, 2019 2:13 PM
> > > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > John,
> > > >
> > > > By default, R uses the /tmp directory to install packages. The
> > > > /tmp directory is often marked as “noexec”. This means that no
> > > > file under /tmp can ever be executed.
> > > > To solve this problem you need  to set the TMPDIR environment
> > > > variable:
> > > > For csh shell:
> > > > mkdir ~/tmp
> > > > setenv TMPDIR ~/tmp
> > > >
> > > > for bash:
> > > > mkdir ~/tmp
> > > > export TMPDIR=~/tmp
> > > >
> > > > gsl package is only needed for Eclv plot. If you are not
planning
> > > > to create these plots you don't need to install this package.
> > > >
> > > > Tatiana
> > > >
> > > >
> > > >
> > > > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > Tatiana -
> > > > >
> > > > > Today I was able to resume the loading of the R packages you
> > > > > specified in an earlier email. There were issues encountered
> > > > > when loading 'gsl"
> > > > > and 'verification'. I'm not sure where to start debugging
the
> > > > > issues.
> > > > > I captured the screen dialog so you can see more specific
info
> > > > > about them. See attached text file.
> > > > >
> > > > > The R packages which appear to have loaded successfully are:
> > > > > 'boot', 'plotrix', and 'data.table'
> > > > >
> > > > > What do you recommend for troubleshooting these issues?
> > > > >
> > > > > At this point, I believe that you have all the info you
> > > > > requested which was provided in earlier emails.
> > > > >
> > > > > Let me know if you need additional info to proceed.
> > > > >
> > > > > Thanks.
> > > > >
> > > > > R/
> > > > >  John
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > ________________________________________
> > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > > > To: met_help at ucar.edu
> > > > >    Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer (UNCLASSIFIED)
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > I'm sorry about the delay in getting back to you with an
> > > > > update.
> > > > >
> > > > > My workstation is fully operational now. I have not had a
> > > > > chance
> > > > > to load the remaining R packages.
> > > > >
> > > > > In answer to the questions you asked me:
> > > > >
> > > > > - database host and port. By default it is localhost:3306.
Will
> > > > > this apply to your server?
> > > > >      YES
> > > > > - database user name and password. This is for the user that
> > > > > would insert and retrieve date to/from database
> > > > >      ruser / whitesands
> > > > > - the path to Tomcat's webapp directory
> > > > >      /opt/tomcat7/webapp
> > > > > - the path where the R executables will be installed.
> > > > >      /home/jraby/R/R-3.6.1/bin/
> > > > > - path to Java. By default it is java. Will this apply to
your
> > > > > server?
> > > > >      /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > > > - path where the METViewer
> > > > > executables should be located.
> > > > >      /home/jraby/METViewer
> > > > >
> > > > > Let me know if you need other details.
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > >
> > > > > -----Original Message-----
> > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > Sent: Thursday, July 25, 2019 8:35 AM
> > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > >    Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer
> > > > > (UNCLASSIFIED)
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > FYI, the issue with my workstation has been resolved and I
> > > > > should receive it back in my office today. I will load the
> > > > > remaining R packages which you listed in your earlier email.
> > > > > I'll have my system admin send you the info you requested
last
> > > > > week soon.
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > > -----Original Message-----
> > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > Sent: Friday, July 19, 2019 3:23 PM
> > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > >    Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer
> > > > > (UNCLASSIFIED)
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > My system admin was able to change the permissions on the
> > > > > library and all other directories in the install directory
and
> > > > > I
> > > > > was able to load the first R package successfully at:
> > > > > /home/jraby/R/R-3.6.1/library
> > > > >
> > > > > My system admin was working on obtaining the rest of the
info
> > > > > you requested.
> > > > > Unfortunately, the workstation would not complete a reboot
and
> > > > > cannot be accessed now. He is looking into resolving that
> > > > > problem now. Not sure whether the problem is connected with
the
> > > > > installation of the new apps associated with getting the
system
> > > > > provisioned for METViewer, but it is strangely coincident.
> > > > >
> > > > > I'll be back in touch on Monday to provide an update on the
> > > > > status.
> > > > >
> > > > > Have a great weekend!
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > > -----Original Message-----
> > > > >  From: Tatiana Burek via RT
> > > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > > Sent: Friday, July 19, 2019 12:57 PM
> > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing
> > > > > METviewer
> > > > >
> > > > > METviewer can work with personal libraries. Let me know the
> > > > > path
> > > > > and I add it to build.
> > > > > Is it /home/jraby/R/R-3.6.1/library?
> > > > >
> > > > > Tatiana
> > > > >
> > > > > On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > Tatiana -
> > > > > >
> > > > > > Thanks for the info and guidance.
> > > > > >
> > > > > > I tried loading the R packages with user permissions, but
it
> > > > > > can't due to an apparent permissions issue. See the
following
> > > > > > dialog:
> > > > > > > install.packages('boot')
> > > > > > Warning in install.packages("boot") :
> > > > > >      'lib = "/home/jraby/R/R-3.6.1/library"' is not
writable
> > > > > > Would you like to use a personal library instead?
> > > > > > (yes/No/cancel)
> > > > > >
> > > > > > If I set up a "personal" library as they suggest, will
> > > > > > METViewer have an issue?
> > > > > >
> > > > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > > > >
> > > > > > My system admin is working on getting answers to the
> > > > > > remaining
> > > > > > questions.
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > > ________________________________________
> > > > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > Hi John,
> > > > > > Were you able to install the additional R packages?
> > > > > >  I can build and provide you .war file as well as other
> > > > > > executables.
> > > > > > For that, I need some parameters  to build these files:
> > > > > >   - database host and port. By default it is
localhost:3306.
> > > > > > Will this apply to your server?
> > > > > >    - database user name and password. This is for the user
> > > > > > that
> > > > > > would insert and retrieve date to/from database
> > > > > >    - the path to Rscript executable. By default it is just
> > > > > > Rscript.Will this apply to your server?
> > > > > > - the path to Tomcat's webapp directory
> > > > > > - the path where the executables will be installed.
> > > > > >    - path to Java. By default it is java. Will this apply
to
> > > > > > your server?
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > >
> > > > > > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > > Tatiana -
> > > > > > >
> > > > > > > At this time, the system admin has the following
installed
> > > > > > > on my
> > > > > > > workstation:
> > > > > > > MariaDB, Java, Tomcat, and R
> > > > > > >
> > > > > > > He says that a .war file is needed and that it must be
> > > > > > > placed in a specific directory under Tomcat to allow the
> > > > > > > METViewer to deploy.
> > > > > > >
> > > > > > > Based on this, what is the next step?
> > > > > > >
> > > > > > > Thanks.
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > >  From: Tatiana Burek via RT
> > > > > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > > > >    To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > Installing METviewer
> > > > > > >
> > > > > > > - METviewer will work with any version of Tomcat
starting
> > > > > > > from
> > > > > > > Tomcat6
> > > > > > > and
> > > > > > > ending with  Tomcat8.
> > > > > > > - You can install packages after R is installed.
> > > > > > >   - METviewer supports MariaDB. We use this setup on one
of
> > > > > > > our servers
> > > > > > >   - By  modules I mean the load/batch portion of
METviewer
> > > > > > > (
> > > > > > > the command line interface ) and the web application.
> > > > > > >
> > > > > > > The batch/load module is basically a folder with scripts
> > > > > > > and
> > > > > > > executables. Web application comes as a .war file that
can
> > > > > > > be put under Tomcat.
> > > > > > > Ant build script requires some setting variables and
builds
> > > > > > > both modules OR you would give me settings and I build
> > > > > > > modules for you.
> > > > > > >
> > > > > > > Tatiana
> > > > > > >
> > > > > > >
> > > > > > > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil
> > > > > > > wrote:
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > My system admin has started the provisioning of my
> > > > > > > > workstation.
> > > > > > > >
> > > > > > > > In answer to your question about Java the following
shows
> > > > > > > > the
> > > > > > > > version:
> > > > > > > > java -version
> > > > > > > > java version "1.8.0_212"
> > > > > > > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10)
> > > > > > > > Java
> > > > > > > > HotSpot(TM)
> > > > > > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > > > > > >
> > > > > > > > Regards my preference for the running mode, I would
like
> > > > > > > > to use the web UI. Is there a version requirement for
> > > > > > > > Tomcat?
> > > > > > > >
> > > > > > > > He has installed MariaDB (myql for RHEL7) and is
> > > > > > > > currently
> > > > > > > > in the process of installing R. I assume that once R
is
> > > > > > > > installed that I can install the packages you mention
> > > > > > > > below, correct?
> > > > > > > >
> > > > > > > > I'm not quite sure what METViewer modules are for
> > > > > > > > answering your question about whether I want to build
> > > > > > > > them
> > > > > > > > or have you do it.
> > > > > > > > Could
> > > > > > > > you provide more explanation or point me to where I
can
> > > > > > > > read more?
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > >  From: Tatiana Burek via RT
> > > > > > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > > > >    To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > > Installing METviewer
> > > > > > > >
> > > > > > > > All active links contained in this email were
disabled.
> > > > > > > >  Please verify the identity of the sender, and confirm
> > > > > > > > the
> > > > > > > >  authenticity of all links contained within the
message
> > > > > > > > prior to copying and pasting the address to a Web
> > > > > > > > browser.
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > ----
> > > > > > > >
> > > > > > > > Hi John,
> > > > > > > >      Are you planning to run METviewer using the batch
> > > > > > > > mode
> > > > > > > >  only  (from the command  line with XML configuration)
or
> > > > > > > > with the web user interface option?
> > > > > > > > If you
> > > > > > > >     need UI you need to install Tomcat. With Tomcat
only,
> > > > > > > >  you can  access UI using  Caution-
> > > > > > > > Caution-Caution-http://localhost:8080/metviewer.
> > > > > > > >   For  more advanced settings you need to use
> > > > > > > > Apache/Tomcat
> > > > > > > > configurations.
> > > > > > > > You also need to install R packages from R console:
> > > > > > > > install.packages('boot')
> > > > > > > > install.packages('plotrix')
> > > > > > > > install.packages('gsl')
> > > > > > > > install.packages('data.table')
> > > > > > > > install.packages('verification')
> > > > > > > >
> > > > > > > > I can build METviewer modules for you or you can do it
by
> > > > > > > > yourself.
> > > > > > > > In
> > > > > > > > this case you need to install Ant. Let me know your
> > > > > > > > preference.
> > > > > > > > What is the version of Java you going to use?
> > > > > > > >
> > > > > > > > Tatiana
> > > > > > > >
> > > > > > > > Tatiana
> > > > > > > >
> > > > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > > > I am starting the preps to have METViewer installed
on
> > > > > > > > > my local linux workstation. I already have Java and
> > > > > > > > > need
> > > > > > > > > to have R and MySQL installed. Anything else?
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



------------------------------------------------
Subject: Installing METviewer
From: Raby, John W USA CIV
Time: Wed Aug 07 12:21:01 2019

CLASSIFICATION: UNCLASSIFIED

Tatiana -

I like your idea. What is the impact of not having gsl?

What is the next step to install METViewer?

R/
John

-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Wednesday, August 7, 2019 11:20 AM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

you can install METviewer without gsl package.


Tatiana
On Wed Aug 07 09:46:16 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> Thanks for taking a look at the error anyway. Do you have a choice
> which gsl version gets installed? The loading of the R package
> apparently prescribes what version is installed. Is this your
> understanding?
>
> If I had the option of independently installing a different gsl
> version myself and was lucky enough to get a version which
> successfully compiles, would it be possible to have R use this
version
> for the loading of the gsl package?
>
> Can  I proceed with installing METViewer  despite not having the gsl
> package loaded?
>
> R/
> John
>
> -----Original Message-----
>  From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> Sent: Wednesday, August 7, 2019 9:31 AM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> All active links contained in this email were disabled.  Please
verify
> the identity of the sender, and confirm the authenticity of all
links
> contained within the message prior to copying and pasting the
address
> to a Web browser.
>
>
>
>
> ----
>
> John,
>
> I am not an expert in gsl installs and I can't replicate this
problem
> on our servers.
> Looks like some gsl users have similar errors:
> Caution-https://github.com/RobinHankin/gsl/issues/4
> According to this thread the problem can be in GSL version. Pleas
take
> a look at the comments by user 'RobinHankin' about the multiple or
old
> versons.
>
> Tatiana
>
> On Wed Aug 07 07:28:44 2019, john.w.raby2.civ at mail.mil wrote:
> > Tatiana -
> >
> > This morning I tried a couple of tests to see if I could load the
> > gsl R package. First, I opened a terminal and just ran the install
> > command in R as before but selected a different CRAN site for
> > downloading the package. The result was the same as the error I
> > reported in my email below.
> >
> > Then I opened a new terminal and set the env variables you
described
> > in an earlier email for bash. I then attempted to install the gsl
R
> > package, but this time the dialog was different. Apparently it got
> > past the issue which prevented execution before, and now it can't
> > compile the package. See the following dialog:
> >
> > trying URL
> > 'Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.1
> > -
> > 6.tar.gz'
> >  Content type 'application/octet-stream' length 189794 bytes (185
> > KB) ==================================================
> > downloaded 185 KB
> >
> > * installing *source* package 'gsl' ...
> > ** package 'gsl' successfully unpacked and MD5 sums checked
> > ** using staged installation
> >  checking for gsl-config... /usr/bin/gsl-config checking if GSL
> > version
> > > = 2.1... checking for gcc... gcc checking whether the C compiler
> > works... yes checking for C compiler default output file name...
> > a.out
> > checking for suffix of executables...
> > checking whether we are cross compiling... no checking for suffix
of
> > object files... o checking whether we are using the GNU C
compiler...
> > yes checking whether gcc accepts -g... yes checking for gcc option
> > to accept ISO C89... none needed yes
> > configure: creating ./config.status
> > config.status: creating src/Makevars
> > ** libs
> > gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> > -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c airy.c
> > -o airy.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
-DNDEBUG
> > -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
bessel.c
> > -o bessel.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
> > -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2
-c
> > clausen.c -o clausen.o gcc -std=gnu99 -I"/home/jraby/R/R-
3.6.1/include"
> > -DNDEBUG
> > -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> > coulomb.c -o coulomb.o gcc -std=gnu99 -I"/home/jraby/R/R-
3.6.1/include"
> > -DNDEBUG
> > -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> > coupling.c -o coupling.o gcc -std=gnu99
> > -I"/home/jraby/R/R-3.6.1/include"
> > -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2
-c
> > dawson.c -o dawson.o gcc -std=gnu99 -I"/home/jraby/R/R-
3.6.1/include"
> > -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2
-c
> > debye.c -o debye.o gcc -std=gnu99 -I"/home/jraby/R/R-
3.6.1/include"
> > -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2
-c
> > dilog.c -o dilog.o gcc -std=gnu99 -I"/home/jraby/R/R-
3.6.1/include"
> > -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2
-c
> > ellint.c -o ellint.o
> > ellint.c: In function 'ellint_D_e':
> > ellint.c:82:5: warning: passing argument 4 of 'gsl_sf_ellint_D_e'
> > makes integer from pointer without a cast [enabled by default]
> >    status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
> > &result) ;
> >    ^
> > In file included from ellint.c:1:0:
> > /usr/include/gsl/gsl_sf_ellint.h:84:5: note: expected 'gsl_mode_t'
> > but
> > argument is of type 'struct gsl_sf_result *'
> > int gsl_sf_ellint_D_e(double phi, double k, double n, gsl_mode_t
> > mode, gsl_sf_result * result);
> >    ^
> > ellint.c:82:5: error: too few arguments to function
> > 'gsl_sf_ellint_D_e'
> >    status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
> > &result) ;
> >    ^
> > In file included from ellint.c:1:0:
> > /usr/include/gsl/gsl_sf_ellint.h:84:5: note: declared here  int
> > gsl_sf_ellint_D_e(double phi, double k, double n, gsl_mode_t mode,
> > gsl_sf_result * result);
> >    ^
> > make: *** [ellint.o] Error 1
> > ERROR: compilation failed for package 'gsl'
> > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> >
> > The downloaded source packages are in
> >         '/home/jraby/tmp/RtmpO0i7Ze/downloaded_packages'
> > Updating HTML index of packages in '.Library'
> > Making 'packages.html' ... done
> > Warning message:
> > In install.packages("gsl") :
> >   installation of package 'gsl' had non-zero exit status
> >
> > R/
> > John
> >
> >
> > ________________________________________
> > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > Sent: Tuesday, August 06, 2019 4:39 PM
> > To: met_help at ucar.edu
> >  Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer (UNCLASSIFIED)
> >
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > My sysadm installed gsl-devel using the command you provided. I
just
> > tried to load the R package, but it has the same error:
> >
> > > install.packages('gsl')
> > --- Please select a CRAN mirror for use in this session --- I
> > selected
> > 63 (USA MI)
> >
> > trying URL
> > 'Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.1
> > -
> > 6.tar.gz'
> >  Content type 'application/octet-stream' length 189794 bytes (185
> > KB) ==================================================
> > downloaded 185 KB
> >
> > * installing *source* package 'gsl' ...
> > ** package 'gsl' successfully unpacked and MD5 sums checked
> > ** using staged installation
> >  ERROR: 'configure' exists but is not executable -- see the 'R
> > Installation and Administration Manual'
> > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> >
> > The downloaded source packages are in
> >         '/tmp/RtmpFotJTN/downloaded_packages'
> > Updating HTML index of packages in '.Library'
> > Making 'packages.html' ... done
> > Warning message:
> > In install.packages("gsl") :
> >   installation of package 'gsl' had non-zero exit status
> >
> > R/
> > John
> >
> >
> >
> > -----Original Message-----
> > From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > Sent: Tuesday, August 6, 2019 3:17 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > All active links contained in this email were disabled.  Please
> > verify the identity of the sender, and confirm the authenticity of
> > all links contained within the message prior to copying and
pasting
> > the address to a Web browser.
> >
> >
> >
> >
> > ----
> >
> > I checked R gsl dependencies and it does require gsl-devel To
> > install gsl-devel you (or your sys admin)  need to run yum install
> > gsl-devel
> >
> > Tatiana
> >
> > On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > So, gsl itself is not required in order to have a successful
> > > install of the R package gsl, correct?
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > >   From: Tatiana Burek via RT
> > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > Sent: Tuesday, August 6, 2019 2:50 PM
> > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > gsl and "R package gsl" are different libraries and are needed
to
> > > be installed separately.
> > > I'm not sure that  there is a dependency between of them but if
> > > there is than R gsl would depend on the standard gsl.
> > >
> > > Tatiana
> > >
> > > On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil wrote:
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > Thanks for your guidance on resolving the issues. I will
consult
> > > > with my sysadm and get back to you soon.
> > > >
> > > > Regards the gsl package, I read about the eclv plot and I
don't
> > > > have an interest at the present time. Was the loading of the
gsl
> > > > package supposed to do an install of the gsl? I have installed
> > > > gsl as part of the provisioning required prior to installing
MET
> > > > V5.2 on the HPC. If I was able to do that on my workstation
and
> > > > was successful, would that alleviate the problem and allow the
> > > > package to be installed?
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > >
> > > > -----Original Message-----
> > > >   From: Tatiana Burek via RT
> > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > Sent: Tuesday, August 6, 2019 2:13 PM
> > > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > John,
> > > >
> > > > By default, R uses the /tmp directory to install packages. The
> > > > /tmp directory is often marked as “noexec”. This means that no
> > > > file under /tmp can ever be executed.
> > > > To solve this problem you need  to set the TMPDIR environment
> > > > variable:
> > > > For csh shell:
> > > > mkdir ~/tmp
> > > > setenv TMPDIR ~/tmp
> > > >
> > > > for bash:
> > > > mkdir ~/tmp
> > > > export TMPDIR=~/tmp
> > > >
> > > > gsl package is only needed for Eclv plot. If you are not
> > > > planning to create these plots you don't need to install this
package.
> > > >
> > > > Tatiana
> > > >
> > > >
> > > >
> > > > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > Tatiana -
> > > > >
> > > > > Today I was able to resume the loading of the R packages you
> > > > > specified in an earlier email. There were issues encountered
> > > > > when loading 'gsl"
> > > > > and 'verification'. I'm not sure where to start debugging
the
> > > > > issues.
> > > > > I captured the screen dialog so you can see more specific
info
> > > > > about them. See attached text file.
> > > > >
> > > > > The R packages which appear to have loaded successfully are:
> > > > > 'boot', 'plotrix', and 'data.table'
> > > > >
> > > > > What do you recommend for troubleshooting these issues?
> > > > >
> > > > > At this point, I believe that you have all the info you
> > > > > requested which was provided in earlier emails.
> > > > >
> > > > > Let me know if you need additional info to proceed.
> > > > >
> > > > > Thanks.
> > > > >
> > > > > R/
> > > > >  John
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > ________________________________________
> > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > > > To: met_help at ucar.edu
> > > > >    Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer (UNCLASSIFIED)
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > I'm sorry about the delay in getting back to you with an
> > > > > update.
> > > > >
> > > > > My workstation is fully operational now. I have not had a
> > > > > chance to load the remaining R packages.
> > > > >
> > > > > In answer to the questions you asked me:
> > > > >
> > > > > - database host and port. By default it is localhost:3306.
> > > > > Will this apply to your server?
> > > > >      YES
> > > > > - database user name and password. This is for the user that
> > > > > would insert and retrieve date to/from database
> > > > >      ruser / whitesands
> > > > > - the path to Tomcat's webapp directory
> > > > >      /opt/tomcat7/webapp
> > > > > - the path where the R executables will be installed.
> > > > >      /home/jraby/R/R-3.6.1/bin/
> > > > > - path to Java. By default it is java. Will this apply to
your
> > > > > server?
> > > > >      /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > > > - path where the METViewer
> > > > > executables should be located.
> > > > >      /home/jraby/METViewer
> > > > >
> > > > > Let me know if you need other details.
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > >
> > > > > -----Original Message-----
> > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > Sent: Thursday, July 25, 2019 8:35 AM
> > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > >    Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer
> > > > > (UNCLASSIFIED)
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > FYI, the issue with my workstation has been resolved and I
> > > > > should receive it back in my office today. I will load the
> > > > > remaining R packages which you listed in your earlier email.
> > > > > I'll have my system admin send you the info you requested
last
> > > > > week soon.
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > > -----Original Message-----
> > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > Sent: Friday, July 19, 2019 3:23 PM
> > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > >    Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer
> > > > > (UNCLASSIFIED)
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > My system admin was able to change the permissions on the
> > > > > library and all other directories in the install directory
and
> > > > > I was able to load the first R package successfully at:
> > > > > /home/jraby/R/R-3.6.1/library
> > > > >
> > > > > My system admin was working on obtaining the rest of the
info
> > > > > you requested.
> > > > > Unfortunately, the workstation would not complete a reboot
and
> > > > > cannot be accessed now. He is looking into resolving that
> > > > > problem now. Not sure whether the problem is connected with
> > > > > the installation of the new apps associated with getting the
> > > > > system provisioned for METViewer, but it is strangely
coincident.
> > > > >
> > > > > I'll be back in touch on Monday to provide an update on the
> > > > > status.
> > > > >
> > > > > Have a great weekend!
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > > -----Original Message-----
> > > > >  From: Tatiana Burek via RT
> > > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > > Sent: Friday, July 19, 2019 12:57 PM
> > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer
> > > > >
> > > > > METviewer can work with personal libraries. Let me know the
> > > > > path and I add it to build.
> > > > > Is it /home/jraby/R/R-3.6.1/library?
> > > > >
> > > > > Tatiana
> > > > >
> > > > > On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > Tatiana -
> > > > > >
> > > > > > Thanks for the info and guidance.
> > > > > >
> > > > > > I tried loading the R packages with user permissions, but
it
> > > > > > can't due to an apparent permissions issue. See the
> > > > > > following
> > > > > > dialog:
> > > > > > > install.packages('boot')
> > > > > > Warning in install.packages("boot") :
> > > > > >      'lib = "/home/jraby/R/R-3.6.1/library"' is not
writable
> > > > > > Would you like to use a personal library instead?
> > > > > > (yes/No/cancel)
> > > > > >
> > > > > > If I set up a "personal" library as they suggest, will
> > > > > > METViewer have an issue?
> > > > > >
> > > > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > > > >
> > > > > > My system admin is working on getting answers to the
> > > > > > remaining questions.
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > > ________________________________________
> > > > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > Hi John,
> > > > > > Were you able to install the additional R packages?
> > > > > >  I can build and provide you .war file as well as other
> > > > > > executables.
> > > > > > For that, I need some parameters  to build these files:
> > > > > >   - database host and port. By default it is
localhost:3306.
> > > > > > Will this apply to your server?
> > > > > >    - database user name and password. This is for the user
> > > > > > that would insert and retrieve date to/from database
> > > > > >    - the path to Rscript executable. By default it is just
> > > > > > Rscript.Will this apply to your server?
> > > > > > - the path to Tomcat's webapp directory
> > > > > > - the path where the executables will be installed.
> > > > > >    - path to Java. By default it is java. Will this apply
to
> > > > > > your server?
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > >
> > > > > > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > > Tatiana -
> > > > > > >
> > > > > > > At this time, the system admin has the following
installed
> > > > > > > on my
> > > > > > > workstation:
> > > > > > > MariaDB, Java, Tomcat, and R
> > > > > > >
> > > > > > > He says that a .war file is needed and that it must be
> > > > > > > placed in a specific directory under Tomcat to allow the
> > > > > > > METViewer to deploy.
> > > > > > >
> > > > > > > Based on this, what is the next step?
> > > > > > >
> > > > > > > Thanks.
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > >  From: Tatiana Burek via RT
> > > > > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > > > >    To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > Installing METviewer
> > > > > > >
> > > > > > > - METviewer will work with any version of Tomcat
starting
> > > > > > > from
> > > > > > > Tomcat6
> > > > > > > and
> > > > > > > ending with  Tomcat8.
> > > > > > > - You can install packages after R is installed.
> > > > > > >   - METviewer supports MariaDB. We use this setup on one
> > > > > > > of our servers
> > > > > > >   - By  modules I mean the load/batch portion of
METviewer
> > > > > > > ( the command line interface ) and the web application.
> > > > > > >
> > > > > > > The batch/load module is basically a folder with scripts
> > > > > > > and executables. Web application comes as a .war file
that
> > > > > > > can be put under Tomcat.
> > > > > > > Ant build script requires some setting variables and
> > > > > > > builds both modules OR you would give me settings and I
> > > > > > > build modules for you.
> > > > > > >
> > > > > > > Tatiana
> > > > > > >
> > > > > > >
> > > > > > > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil
> > > > > > > wrote:
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > My system admin has started the provisioning of my
> > > > > > > > workstation.
> > > > > > > >
> > > > > > > > In answer to your question about Java the following
> > > > > > > > shows the
> > > > > > > > version:
> > > > > > > > java -version
> > > > > > > > java version "1.8.0_212"
> > > > > > > > Java(TM) SE Runtime Environment (build 1.8.0_212-b10)
> > > > > > > > Java
> > > > > > > > HotSpot(TM)
> > > > > > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > > > > > >
> > > > > > > > Regards my preference for the running mode, I would
like
> > > > > > > > to use the web UI. Is there a version requirement for
> > > > > > > > Tomcat?
> > > > > > > >
> > > > > > > > He has installed MariaDB (myql for RHEL7) and is
> > > > > > > > currently in the process of installing R. I assume
that
> > > > > > > > once R is installed that I can install the packages
you
> > > > > > > > mention below, correct?
> > > > > > > >
> > > > > > > > I'm not quite sure what METViewer modules are for
> > > > > > > > answering your question about whether I want to build
> > > > > > > > them or have you do it.
> > > > > > > > Could
> > > > > > > > you provide more explanation or point me to where I
can
> > > > > > > > read more?
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > >  From: Tatiana Burek via RT
> > > > > > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > > > >    To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > > Installing METviewer
> > > > > > > >
> > > > > > > > All active links contained in this email were
disabled.
> > > > > > > >  Please verify the identity of the sender, and confirm
> > > > > > > > the  authenticity of all links contained within the
> > > > > > > > message prior to copying and pasting the address to a
> > > > > > > > Web browser.
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > ----
> > > > > > > >
> > > > > > > > Hi John,
> > > > > > > >      Are you planning to run METviewer using the batch
> > > > > > > > mode  only  (from the command  line with XML
> > > > > > > > configuration) or with the web user interface option?
> > > > > > > > If you
> > > > > > > >     need UI you need to install Tomcat. With Tomcat
> > > > > > > > only,  you can  access UI using  Caution-
> > > > > > > > Caution-Caution-http://localhost:8080/metviewer.
> > > > > > > >   For  more advanced settings you need to use
> > > > > > > > Apache/Tomcat configurations.
> > > > > > > > You also need to install R packages from R console:
> > > > > > > > install.packages('boot')
> > > > > > > > install.packages('plotrix')
> > > > > > > > install.packages('gsl')
> > > > > > > > install.packages('data.table')
> > > > > > > > install.packages('verification')
> > > > > > > >
> > > > > > > > I can build METviewer modules for you or you can do it
> > > > > > > > by yourself.
> > > > > > > > In
> > > > > > > > this case you need to install Ant. Let me know your
> > > > > > > > preference.
> > > > > > > > What is the version of Java you going to use?
> > > > > > > >
> > > > > > > > Tatiana
> > > > > > > >
> > > > > > > > Tatiana
> > > > > > > >
> > > > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > > > I am starting the preps to have METViewer installed
on
> > > > > > > > > my local linux workstation. I already have Java and
> > > > > > > > > need to have R and MySQL installed. Anything else?
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



CLASSIFICATION: UNCLASSIFIED

------------------------------------------------
Subject: Installing METviewer
From: Tatiana Burek
Time: Wed Aug 07 13:23:15 2019

John,
I sent you install files with the instructions on Aug.1. Have you
receive them?

Tatiana
On Wed Aug 07 12:21:01 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> I like your idea. What is the impact of not having gsl?
>
> What is the next step to install METViewer?
>
> R/
> John
>
> -----Original Message-----
>  From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> Sent: Wednesday, August 7, 2019 11:20 AM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> you can install METviewer without gsl package.
>
>
> Tatiana
> On Wed Aug 07 09:46:16 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > Thanks for taking a look at the error anyway. Do you have a choice
> > which gsl version gets installed? The loading of the R package
> > apparently prescribes what version is installed. Is this your
> > understanding?
> >
> > If I had the option of independently installing a different gsl
> > version myself and was lucky enough to get a version which
> > successfully compiles, would it be possible to have R use this
> > version
> > for the loading of the gsl package?
> >
> > Can  I proceed with installing METViewer  despite not having the
gsl
> > package loaded?
> >
> > R/
> > John
> >
> > -----Original Message-----
> >  From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> > Sent: Wednesday, August 7, 2019 9:31 AM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > All active links contained in this email were disabled.  Please
> > verify
> > the identity of the sender, and confirm the authenticity of all
links
> > contained within the message prior to copying and pasting the
address
> > to a Web browser.
> >
> >
> >
> >
> > ----
> >
> > John,
> >
> > I am not an expert in gsl installs and I can't replicate this
problem
> > on our servers.
> > Looks like some gsl users have similar errors:
> > Caution-https://github.com/RobinHankin/gsl/issues/4
> > According to this thread the problem can be in GSL version. Pleas
> > take
> > a look at the comments by user 'RobinHankin' about the multiple or
> > old
> > versons.
> >
> > Tatiana
> >
> > On Wed Aug 07 07:28:44 2019, john.w.raby2.civ at mail.mil wrote:
> > > Tatiana -
> > >
> > > This morning I tried a couple of tests to see if I could load
the
> > > gsl R package. First, I opened a terminal and just ran the
install
> > > command in R as before but selected a different CRAN site for
> > > downloading the package. The result was the same as the error I
> > > reported in my email below.
> > >
> > > Then I opened a new terminal and set the env variables you
> > > described
> > > in an earlier email for bash. I then attempted to install the
gsl R
> > > package, but this time the dialog was different. Apparently it
got
> > > past the issue which prevented execution before, and now it
can't
> > > compile the package. See the following dialog:
> > >
> > > trying URL
> > > 'Caution-
> > > https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.1
> > > -
> > > 6.tar.gz'
> > >   Content type 'application/octet-stream' length 189794 bytes
(185
> > > KB) ==================================================
> > > downloaded 185 KB
> > >
> > > * installing *source* package 'gsl' ...
> > > ** package 'gsl' successfully unpacked and MD5 sums checked
> > > ** using staged installation
> > >   checking for gsl-config... /usr/bin/gsl-config checking if GSL
> > > version
> > > > = 2.1... checking for gcc... gcc checking whether the C
compiler
> > > works... yes checking for C compiler default output file name...
> > > a.out
> > > checking for suffix of executables...
> > >  checking whether we are cross compiling... no checking for
suffix
> > > of
> > > object files... o checking whether we are using the GNU C
> > > compiler...
> > >  yes checking whether gcc accepts -g... yes checking for gcc
option
> > > to accept ISO C89... none needed yes
> > > configure: creating ./config.status
> > > config.status: creating src/Makevars
> > > ** libs
> > >  gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> > >  -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
airy.c
> > >  -o airy.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
> > > -DNDEBUG
> > >  -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> > > bessel.c
> > >  -o bessel.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
> > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > -c
> > > clausen.c -o clausen.o gcc -std=gnu99 -I"/home/jraby/R/R-
> > > 3.6.1/include"
> > > -DNDEBUG
> > >  -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> > > coulomb.c -o coulomb.o gcc -std=gnu99 -I"/home/jraby/R/R-
> > > 3.6.1/include"
> > > -DNDEBUG
> > >  -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> > >  coupling.c -o coupling.o gcc -std=gnu99
> > > -I"/home/jraby/R/R-3.6.1/include"
> > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > -c
> > > dawson.c -o dawson.o gcc -std=gnu99 -I"/home/jraby/R/R-
> > > 3.6.1/include"
> > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > -c
> > > debye.c -o debye.o gcc -std=gnu99 -I"/home/jraby/R/R-
3.6.1/include"
> > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > -c
> > > dilog.c -o dilog.o gcc -std=gnu99 -I"/home/jraby/R/R-
3.6.1/include"
> > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > -c
> > > ellint.c -o ellint.o
> > > ellint.c: In function 'ellint_D_e':
> > > ellint.c:82:5: warning: passing argument 4 of
'gsl_sf_ellint_D_e'
> > > makes integer from pointer without a cast [enabled by default]
> > >    status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
> > > &result) ;
> > >    ^
> > > In file included from ellint.c:1:0:
> > > /usr/include/gsl/gsl_sf_ellint.h:84:5: note: expected
'gsl_mode_t'
> > > but
> > > argument is of type 'struct gsl_sf_result *'
> > >  int gsl_sf_ellint_D_e(double phi, double k, double n,
gsl_mode_t
> > > mode, gsl_sf_result * result);
> > >    ^
> > >  ellint.c:82:5: error: too few arguments to function
> > > 'gsl_sf_ellint_D_e'
> > >    status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
> > > &result) ;
> > >    ^
> > > In file included from ellint.c:1:0:
> > >  /usr/include/gsl/gsl_sf_ellint.h:84:5: note: declared here  int
> > >  gsl_sf_ellint_D_e(double phi, double k, double n, gsl_mode_t
mode,
> > > gsl_sf_result * result);
> > >    ^
> > > make: *** [ellint.o] Error 1
> > > ERROR: compilation failed for package 'gsl'
> > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > >
> > > The downloaded source packages are in
> > >         '/home/jraby/tmp/RtmpO0i7Ze/downloaded_packages'
> > > Updating HTML index of packages in '.Library'
> > > Making 'packages.html' ... done
> > > Warning message:
> > > In install.packages("gsl") :
> > >   installation of package 'gsl' had non-zero exit status
> > >
> > > R/
> > > John
> > >
> > >
> > > ________________________________________
> > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > Sent: Tuesday, August 06, 2019 4:39 PM
> > > To: met_help at ucar.edu
> > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > METviewer (UNCLASSIFIED)
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > My sysadm installed gsl-devel using the command you provided. I
> > > just
> > > tried to load the R package, but it has the same error:
> > >
> > > > install.packages('gsl')
> > > --- Please select a CRAN mirror for use in this session --- I
> > > selected
> > > 63 (USA MI)
> > >
> > > trying URL
> > > 'Caution-
> > > https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.1
> > > -
> > > 6.tar.gz'
> > >   Content type 'application/octet-stream' length 189794 bytes
(185
> > > KB) ==================================================
> > > downloaded 185 KB
> > >
> > > * installing *source* package 'gsl' ...
> > > ** package 'gsl' successfully unpacked and MD5 sums checked
> > > ** using staged installation
> > >   ERROR: 'configure' exists but is not executable -- see the 'R
> > > Installation and Administration Manual'
> > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > >
> > > The downloaded source packages are in
> > >         '/tmp/RtmpFotJTN/downloaded_packages'
> > > Updating HTML index of packages in '.Library'
> > > Making 'packages.html' ... done
> > > Warning message:
> > > In install.packages("gsl") :
> > >   installation of package 'gsl' had non-zero exit status
> > >
> > > R/
> > > John
> > >
> > >
> > >
> > > -----Original Message-----
> > > From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > > Sent: Tuesday, August 6, 2019 3:17 PM
> > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > All active links contained in this email were disabled.  Please
> > > verify the identity of the sender, and confirm the authenticity
of
> > > all links contained within the message prior to copying and
pasting
> > > the address to a Web browser.
> > >
> > >
> > >
> > >
> > > ----
> > >
> > > I checked R gsl dependencies and it does require gsl-devel To
> > > install gsl-devel you (or your sys admin)  need to run yum
install
> > > gsl-devel
> > >
> > > Tatiana
> > >
> > > On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil wrote:
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > So, gsl itself is not required in order to have a successful
> > > > install of the R package gsl, correct?
> > > >
> > > > R/
> > > > John
> > > >
> > > > -----Original Message-----
> > > >   From: Tatiana Burek via RT
> > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > Sent: Tuesday, August 6, 2019 2:50 PM
> > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > gsl and "R package gsl" are different libraries and are needed
to
> > > > be installed separately.
> > > > I'm not sure that  there is a dependency between of them but
if
> > > > there is than R gsl would depend on the standard gsl.
> > > >
> > > > Tatiana
> > > >
> > > > On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > Thanks for your guidance on resolving the issues. I will
> > > > > consult
> > > > > with my sysadm and get back to you soon.
> > > > >
> > > > > Regards the gsl package, I read about the eclv plot and I
don't
> > > > > have an interest at the present time. Was the loading of the
> > > > > gsl
> > > > > package supposed to do an install of the gsl? I have
installed
> > > > > gsl as part of the provisioning required prior to installing
> > > > > MET
> > > > > V5.2 on the HPC. If I was able to do that on my workstation
and
> > > > > was successful, would that alleviate the problem and allow
the
> > > > > package to be installed?
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > >
> > > > >
> > > > > -----Original Message-----
> > > > >   From: Tatiana Burek via RT
> > > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > > Sent: Tuesday, August 6, 2019 2:13 PM
> > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing
> > > > > METviewer
> > > > >
> > > > > John,
> > > > >
> > > > > By default, R uses the /tmp directory to install packages.
The
> > > > > /tmp directory is often marked as “noexec”. This means that
no
> > > > > file under /tmp can ever be executed.
> > > > > To solve this problem you need  to set the TMPDIR
environment
> > > > > variable:
> > > > > For csh shell:
> > > > > mkdir ~/tmp
> > > > > setenv TMPDIR ~/tmp
> > > > >
> > > > > for bash:
> > > > > mkdir ~/tmp
> > > > > export TMPDIR=~/tmp
> > > > >
> > > > > gsl package is only needed for Eclv plot. If you are not
> > > > > planning to create these plots you don't need to install
this
> > > > > package.
> > > > >
> > > > > Tatiana
> > > > >
> > > > >
> > > > >
> > > > > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > Tatiana -
> > > > > >
> > > > > > Today I was able to resume the loading of the R packages
you
> > > > > > specified in an earlier email. There were issues
encountered
> > > > > > when loading 'gsl"
> > > > > > and 'verification'. I'm not sure where to start debugging
the
> > > > > > issues.
> > > > > > I captured the screen dialog so you can see more specific
> > > > > > info
> > > > > > about them. See attached text file.
> > > > > >
> > > > > > The R packages which appear to have loaded successfully
are:
> > > > > > 'boot', 'plotrix', and 'data.table'
> > > > > >
> > > > > > What do you recommend for troubleshooting these issues?
> > > > > >
> > > > > > At this point, I believe that you have all the info you
> > > > > > requested which was provided in earlier emails.
> > > > > >
> > > > > > Let me know if you need additional info to proceed.
> > > > > >
> > > > > > Thanks.
> > > > > >
> > > > > > R/
> > > > > >  John
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > ________________________________________
> > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > > > > To: met_help at ucar.edu
> > > > > >     Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer (UNCLASSIFIED)
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > I'm sorry about the delay in getting back to you with an
> > > > > > update.
> > > > > >
> > > > > > My workstation is fully operational now. I have not had a
> > > > > > chance to load the remaining R packages.
> > > > > >
> > > > > > In answer to the questions you asked me:
> > > > > >
> > > > > > - database host and port. By default it is localhost:3306.
> > > > > > Will this apply to your server?
> > > > > >     YES
> > > > > > - database user name and password. This is for the user
that
> > > > > > would insert and retrieve date to/from database
> > > > > >     ruser / whitesands
> > > > > > - the path to Tomcat's webapp directory
> > > > > >     /opt/tomcat7/webapp
> > > > > > - the path where the R executables will be installed.
> > > > > >     /home/jraby/R/R-3.6.1/bin/
> > > > > > - path to Java. By default it is java. Will this apply to
> > > > > > your
> > > > > > server?
> > > > > >     /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > > > > - path where the METViewer
> > > > > > executables should be located.
> > > > > >     /home/jraby/METViewer
> > > > > >
> > > > > > Let me know if you need other details.
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > Sent: Thursday, July 25, 2019 8:35 AM
> > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > >     Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > > (UNCLASSIFIED)
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > FYI, the issue with my workstation has been resolved and I
> > > > > > should receive it back in my office today. I will load the
> > > > > > remaining R packages which you listed in your earlier
email.
> > > > > > I'll have my system admin send you the info you requested
> > > > > > last
> > > > > > week soon.
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > Sent: Friday, July 19, 2019 3:23 PM
> > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > >     Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > > (UNCLASSIFIED)
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > My system admin was able to change the permissions on the
> > > > > > library and all other directories in the install directory
> > > > > > and
> > > > > > I was able to load the first R package successfully at:
> > > > > > /home/jraby/R/R-3.6.1/library
> > > > > >
> > > > > > My system admin was working on obtaining the rest of the
info
> > > > > > you requested.
> > > > > > Unfortunately, the workstation would not complete a reboot
> > > > > > and
> > > > > > cannot be accessed now. He is looking into resolving that
> > > > > > problem now. Not sure whether the problem is connected
with
> > > > > > the installation of the new apps associated with getting
the
> > > > > > system provisioned for METViewer, but it is strangely
> > > > > > coincident.
> > > > > >
> > > > > > I'll be back in touch on Monday to provide an update on
the
> > > > > > status.
> > > > > >
> > > > > > Have a great weekend!
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > > -----Original Message-----
> > > > > >  From: Tatiana Burek via RT
> > > > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > Sent: Friday, July 19, 2019 12:57 PM
> > > > > >    To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > <john.w.raby2.civ at mail.mil>
> > > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > METviewer can work with personal libraries. Let me know
the
> > > > > > path and I add it to build.
> > > > > > Is it /home/jraby/R/R-3.6.1/library?
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > > Tatiana -
> > > > > > >
> > > > > > > Thanks for the info and guidance.
> > > > > > >
> > > > > > > I tried loading the R packages with user permissions,
but
> > > > > > > it
> > > > > > > can't due to an apparent permissions issue. See the
> > > > > > > following
> > > > > > > dialog:
> > > > > > > > install.packages('boot')
> > > > > > > Warning in install.packages("boot") :
> > > > > > >       'lib = "/home/jraby/R/R-3.6.1/library"' is not
> > > > > > > writable
> > > > > > > Would you like to use a personal library instead?
> > > > > > > (yes/No/cancel)
> > > > > > >
> > > > > > > If I set up a "personal" library as they suggest, will
> > > > > > > METViewer have an issue?
> > > > > > >
> > > > > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > > > > >
> > > > > > > My system admin is working on getting answers to the
> > > > > > > remaining questions.
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > >
> > > > > > > ________________________________________
> > > > > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > Installing METviewer
> > > > > > >
> > > > > > > Hi John,
> > > > > > > Were you able to install the additional R packages?
> > > > > > >   I can build and provide you .war file as well as other
> > > > > > > executables.
> > > > > > > For that, I need some parameters  to build these files:
> > > > > > >   - database host and port. By default it is
> > > > > > > localhost:3306.
> > > > > > > Will this apply to your server?
> > > > > > >     - database user name and password. This is for the
user
> > > > > > > that would insert and retrieve date to/from database
> > > > > > >     - the path to Rscript executable. By default it is
just
> > > > > > > Rscript.Will this apply to your server?
> > > > > > > - the path to Tomcat's webapp directory
> > > > > > > - the path where the executables will be installed.
> > > > > > >     - path to Java. By default it is java. Will this
apply
> > > > > > > to
> > > > > > > your server?
> > > > > > >
> > > > > > > Tatiana
> > > > > > >
> > > > > > >
> > > > > > > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil
> > > > > > > wrote:
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > At this time, the system admin has the following
> > > > > > > > installed
> > > > > > > > on my
> > > > > > > > workstation:
> > > > > > > > MariaDB, Java, Tomcat, and R
> > > > > > > >
> > > > > > > > He says that a .war file is needed and that it must be
> > > > > > > > placed in a specific directory under Tomcat to allow
the
> > > > > > > > METViewer to deploy.
> > > > > > > >
> > > > > > > > Based on this, what is the next step?
> > > > > > > >
> > > > > > > > Thanks.
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > > >
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > >   From: Tatiana Burek via RT
> > > > > > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > > > > >     To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > > Installing METviewer
> > > > > > > >
> > > > > > > > - METviewer will work with any version of Tomcat
starting
> > > > > > > > from
> > > > > > > > Tomcat6
> > > > > > > > and
> > > > > > > > ending with  Tomcat8.
> > > > > > > > - You can install packages after R is installed.
> > > > > > > >   - METviewer supports MariaDB. We use this setup on
one
> > > > > > > > of our servers
> > > > > > > >   - By  modules I mean the load/batch portion of
> > > > > > > > METviewer
> > > > > > > > ( the command line interface ) and the web
application.
> > > > > > > >
> > > > > > > > The batch/load module is basically a folder with
scripts
> > > > > > > > and executables. Web application comes as a .war file
> > > > > > > > that
> > > > > > > > can be put under Tomcat.
> > > > > > > > Ant build script requires some setting variables and
> > > > > > > > builds both modules OR you would give me settings and
I
> > > > > > > > build modules for you.
> > > > > > > >
> > > > > > > > Tatiana
> > > > > > > >
> > > > > > > >
> > > > > > > > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil
> > > > > > > > wrote:
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > My system admin has started the provisioning of my
> > > > > > > > > workstation.
> > > > > > > > >
> > > > > > > > > In answer to your question about Java the following
> > > > > > > > > shows the
> > > > > > > > > version:
> > > > > > > > > java -version
> > > > > > > > > java version "1.8.0_212"
> > > > > > > > > Java(TM) SE Runtime Environment (build 1.8.0_212-
b10)
> > > > > > > > > Java
> > > > > > > > > HotSpot(TM)
> > > > > > > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > > > > > > >
> > > > > > > > > Regards my preference for the running mode, I would
> > > > > > > > > like
> > > > > > > > > to use the web UI. Is there a version requirement
for
> > > > > > > > > Tomcat?
> > > > > > > > >
> > > > > > > > > He has installed MariaDB (myql for RHEL7) and is
> > > > > > > > > currently in the process of installing R. I assume
that
> > > > > > > > > once R is installed that I can install the packages
you
> > > > > > > > > mention below, correct?
> > > > > > > > >
> > > > > > > > > I'm not quite sure what METViewer modules are for
> > > > > > > > > answering your question about whether I want to
build
> > > > > > > > > them or have you do it.
> > > > > > > > > Could
> > > > > > > > > you provide more explanation or point me to where I
can
> > > > > > > > > read more?
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > >   From: Tatiana Burek via RT
> > > > > > > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > > > > >     To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > > > > Installing METviewer
> > > > > > > > >
> > > > > > > > > All active links contained in this email were
disabled.
> > > > > > > > >   Please verify the identity of the sender, and
confirm
> > > > > > > > >  the  authenticity of all links contained within the
> > > > > > > > >  message prior to copying and pasting the address to
a
> > > > > > > > > Web browser.
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > ----
> > > > > > > > >
> > > > > > > > > Hi John,
> > > > > > > > >       Are you planning to run METviewer using the
batch
> > > > > > > > >  mode  only  (from the command  line with XML
> > > > > > > > > configuration) or with the web user interface
option?
> > > > > > > > > If you
> > > > > > > > >      need UI you need to install Tomcat. With Tomcat
> > > > > > > > >  only,  you can  access UI using  Caution-
> > > > > > > > > Caution-Caution-http://localhost:8080/metviewer.
> > > > > > > > >    For  more advanced settings you need to use
> > > > > > > > > Apache/Tomcat configurations.
> > > > > > > > > You also need to install R packages from R console:
> > > > > > > > > install.packages('boot')
> > > > > > > > > install.packages('plotrix')
> > > > > > > > > install.packages('gsl')
> > > > > > > > > install.packages('data.table')
> > > > > > > > > install.packages('verification')
> > > > > > > > >
> > > > > > > > > I can build METviewer modules for you or you can do
it
> > > > > > > > > by yourself.
> > > > > > > > > In
> > > > > > > > > this case you need to install Ant. Let me know your
> > > > > > > > > preference.
> > > > > > > > > What is the version of Java you going to use?
> > > > > > > > >
> > > > > > > > > Tatiana
> > > > > > > > >
> > > > > > > > > Tatiana
> > > > > > > > >
> > > > > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > > > > I am starting the preps to have METViewer
installed
> > > > > > > > > > on
> > > > > > > > > > my local linux workstation. I already have Java
and
> > > > > > > > > > need to have R and MySQL installed. Anything else?
> > > > > > > > > >
> > > > > > > > > > R/
> > > > > > > > > > John
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > >
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



------------------------------------------------
Subject: Installing METviewer
From: Raby, John W USA CIV
Time: Wed Aug 07 14:16:02 2019

CLASSIFICATION: UNCLASSIFIED

Tatiana -

I checked my email and I don't see an email from you on 01 AUG. Not
sure what happened. Could you resend it?

R/
John

-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Wednesday, August 7, 2019 1:23 PM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

All active links contained in this email were disabled.  Please verify
the identity of the sender, and confirm the authenticity of all links
contained within the message prior to copying and pasting the address
to a Web browser.




----

John,
I sent you install files with the instructions on Aug.1. Have you
receive them?

Tatiana
On Wed Aug 07 12:21:01 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> I like your idea. What is the impact of not having gsl?
>
> What is the next step to install METViewer?
>
> R/
> John
>
> -----Original Message-----
>  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> Sent: Wednesday, August 7, 2019 11:20 AM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> you can install METviewer without gsl package.
>
>
> Tatiana
> On Wed Aug 07 09:46:16 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > Thanks for taking a look at the error anyway. Do you have a choice
> > which gsl version gets installed? The loading of the R package
> > apparently prescribes what version is installed. Is this your
> > understanding?
> >
> > If I had the option of independently installing a different gsl
> > version myself and was lucky enough to get a version which
> > successfully compiles, would it be possible to have R use this
> > version for the loading of the gsl package?
> >
> > Can  I proceed with installing METViewer  despite not having the
gsl
> > package loaded?
> >
> > R/
> > John
> >
> > -----Original Message-----
> >  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > Sent: Wednesday, August 7, 2019 9:31 AM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > All active links contained in this email were disabled.  Please
> > verify the identity of the sender, and confirm the authenticity of
> > all links contained within the message prior to copying and
pasting
> > the address to a Web browser.
> >
> >
> >
> >
> > ----
> >
> > John,
> >
> > I am not an expert in gsl installs and I can't replicate this
> > problem on our servers.
> > Looks like some gsl users have similar errors:
> > Caution-Caution-https://github.com/RobinHankin/gsl/issues/4
> > According to this thread the problem can be in GSL version. Pleas
> > take a look at the comments by user 'RobinHankin' about the
multiple
> > or old versons.
> >
> > Tatiana
> >
> > On Wed Aug 07 07:28:44 2019, john.w.raby2.civ at mail.mil wrote:
> > > Tatiana -
> > >
> > > This morning I tried a couple of tests to see if I could load
the
> > > gsl R package. First, I opened a terminal and just ran the
install
> > > command in R as before but selected a different CRAN site for
> > > downloading the package. The result was the same as the error I
> > > reported in my email below.
> > >
> > > Then I opened a new terminal and set the env variables you
> > > described in an earlier email for bash. I then attempted to
> > > install the gsl R package, but this time the dialog was
different.
> > > Apparently it got past the issue which prevented execution
before,
> > > and now it can't compile the package. See the following dialog:
> > >
> > > trying URL
> > > 'Caution-
> > > Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > 1
> > > -
> > > 6.tar.gz'
> > >   Content type 'application/octet-stream' length 189794 bytes
(185
> > > KB) ==================================================
> > > downloaded 185 KB
> > >
> > > * installing *source* package 'gsl' ...
> > > ** package 'gsl' successfully unpacked and MD5 sums checked
> > > ** using staged installation
> > >   checking for gsl-config... /usr/bin/gsl-config checking if GSL
> > > version
> > > > = 2.1... checking for gcc... gcc checking whether the C
compiler
> > > works... yes checking for C compiler default output file name...
> > > a.out
> > > checking for suffix of executables...
> > >  checking whether we are cross compiling... no checking for
suffix
> > > of object files... o checking whether we are using the GNU C
> > > compiler...
> > >  yes checking whether gcc accepts -g... yes checking for gcc
> > > option to accept ISO C89... none needed yes
> > > configure: creating ./config.status
> > > config.status: creating src/Makevars
> > > ** libs
> > >  gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> > > -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
airy.c
> > > -o airy.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
> > > -DNDEBUG
> > >  -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> > > bessel.c  -o bessel.o gcc -std=gnu99
> > > -I"/home/jraby/R/R-3.6.1/include"
> > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > -c clausen.c -o clausen.o gcc -std=gnu99 -I"/home/jraby/R/R-
> > > 3.6.1/include"
> > > -DNDEBUG
> > >  -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> > > coulomb.c -o coulomb.o gcc -std=gnu99 -I"/home/jraby/R/R-
> > > 3.6.1/include"
> > > -DNDEBUG
> > >  -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> > > coupling.c -o coupling.o gcc -std=gnu99
> > > -I"/home/jraby/R/R-3.6.1/include"
> > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > -c dawson.c -o dawson.o gcc -std=gnu99 -I"/home/jraby/R/R-
> > > 3.6.1/include"
> > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > -c debye.c -o debye.o gcc -std=gnu99
> > > -I"/home/jraby/R/R-3.6.1/include"
> > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > -c dilog.c -o dilog.o gcc -std=gnu99
> > > -I"/home/jraby/R/R-3.6.1/include"
> > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > -c ellint.c -o ellint.o
> > > ellint.c: In function 'ellint_D_e':
> > > ellint.c:82:5: warning: passing argument 4 of
'gsl_sf_ellint_D_e'
> > > makes integer from pointer without a cast [enabled by default]
> > >    status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
> > > &result) ;
> > >    ^
> > > In file included from ellint.c:1:0:
> > > /usr/include/gsl/gsl_sf_ellint.h:84:5: note: expected
'gsl_mode_t'
> > > but
> > > argument is of type 'struct gsl_sf_result *'
> > >  int gsl_sf_ellint_D_e(double phi, double k, double n,
gsl_mode_t
> > > mode, gsl_sf_result * result);
> > >    ^
> > >  ellint.c:82:5: error: too few arguments to function
> > > 'gsl_sf_ellint_D_e'
> > >    status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
> > > &result) ;
> > >    ^
> > > In file included from ellint.c:1:0:
> > >  /usr/include/gsl/gsl_sf_ellint.h:84:5: note: declared here  int
> > > gsl_sf_ellint_D_e(double phi, double k, double n, gsl_mode_t
mode,
> > > gsl_sf_result * result);
> > >    ^
> > > make: *** [ellint.o] Error 1
> > > ERROR: compilation failed for package 'gsl'
> > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > >
> > > The downloaded source packages are in
> > >         '/home/jraby/tmp/RtmpO0i7Ze/downloaded_packages'
> > > Updating HTML index of packages in '.Library'
> > > Making 'packages.html' ... done
> > > Warning message:
> > > In install.packages("gsl") :
> > >   installation of package 'gsl' had non-zero exit status
> > >
> > > R/
> > > John
> > >
> > >
> > > ________________________________________
> > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > Sent: Tuesday, August 06, 2019 4:39 PM
> > > To: met_help at ucar.edu
> > >   Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > Installing METviewer (UNCLASSIFIED)
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > My sysadm installed gsl-devel using the command you provided. I
> > > just tried to load the R package, but it has the same error:
> > >
> > > > install.packages('gsl')
> > > --- Please select a CRAN mirror for use in this session --- I
> > > selected
> > > 63 (USA MI)
> > >
> > > trying URL
> > > 'Caution-
> > > Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > 1
> > > -
> > > 6.tar.gz'
> > >   Content type 'application/octet-stream' length 189794 bytes
(185
> > > KB) ==================================================
> > > downloaded 185 KB
> > >
> > > * installing *source* package 'gsl' ...
> > > ** package 'gsl' successfully unpacked and MD5 sums checked
> > > ** using staged installation
> > >   ERROR: 'configure' exists but is not executable -- see the 'R
> > > Installation and Administration Manual'
> > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > >
> > > The downloaded source packages are in
> > >         '/tmp/RtmpFotJTN/downloaded_packages'
> > > Updating HTML index of packages in '.Library'
> > > Making 'packages.html' ... done
> > > Warning message:
> > > In install.packages("gsl") :
> > >   installation of package 'gsl' had non-zero exit status
> > >
> > > R/
> > > John
> > >
> > >
> > >
> > > -----Original Message-----
> > > From: Tatiana Burek via RT
> > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > Sent: Tuesday, August 6, 2019 3:17 PM
> > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > All active links contained in this email were disabled.  Please
> > > verify the identity of the sender, and confirm the authenticity
of
> > > all links contained within the message prior to copying and
> > > pasting the address to a Web browser.
> > >
> > >
> > >
> > >
> > > ----
> > >
> > > I checked R gsl dependencies and it does require gsl-devel To
> > > install gsl-devel you (or your sys admin)  need to run yum
install
> > > gsl-devel
> > >
> > > Tatiana
> > >
> > > On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil wrote:
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > So, gsl itself is not required in order to have a successful
> > > > install of the R package gsl, correct?
> > > >
> > > > R/
> > > > John
> > > >
> > > > -----Original Message-----
> > > >   From: Tatiana Burek via RT
> > > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > Sent: Tuesday, August 6, 2019 2:50 PM
> > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > gsl and "R package gsl" are different libraries and are needed
> > > > to be installed separately.
> > > > I'm not sure that  there is a dependency between of them but
if
> > > > there is than R gsl would depend on the standard gsl.
> > > >
> > > > Tatiana
> > > >
> > > > On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > Thanks for your guidance on resolving the issues. I will
> > > > > consult with my sysadm and get back to you soon.
> > > > >
> > > > > Regards the gsl package, I read about the eclv plot and I
> > > > > don't have an interest at the present time. Was the loading
of
> > > > > the gsl package supposed to do an install of the gsl? I have
> > > > > installed gsl as part of the provisioning required prior to
> > > > > installing MET
> > > > > V5.2 on the HPC. If I was able to do that on my workstation
> > > > > and was successful, would that alleviate the problem and
allow
> > > > > the package to be installed?
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > >
> > > > >
> > > > > -----Original Message-----
> > > > >   From: Tatiana Burek via RT
> > > > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > Sent: Tuesday, August 6, 2019 2:13 PM
> > > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer
> > > > >
> > > > > John,
> > > > >
> > > > > By default, R uses the /tmp directory to install packages.
The
> > > > > /tmp directory is often marked as “noexec”. This means that
no
> > > > > file under /tmp can ever be executed.
> > > > > To solve this problem you need  to set the TMPDIR
environment
> > > > > variable:
> > > > > For csh shell:
> > > > > mkdir ~/tmp
> > > > > setenv TMPDIR ~/tmp
> > > > >
> > > > > for bash:
> > > > > mkdir ~/tmp
> > > > > export TMPDIR=~/tmp
> > > > >
> > > > > gsl package is only needed for Eclv plot. If you are not
> > > > > planning to create these plots you don't need to install
this
> > > > > package.
> > > > >
> > > > > Tatiana
> > > > >
> > > > >
> > > > >
> > > > > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > Tatiana -
> > > > > >
> > > > > > Today I was able to resume the loading of the R packages
you
> > > > > > specified in an earlier email. There were issues
encountered
> > > > > > when loading 'gsl"
> > > > > > and 'verification'. I'm not sure where to start debugging
> > > > > > the issues.
> > > > > > I captured the screen dialog so you can see more specific
> > > > > > info about them. See attached text file.
> > > > > >
> > > > > > The R packages which appear to have loaded successfully
are:
> > > > > > 'boot', 'plotrix', and 'data.table'
> > > > > >
> > > > > > What do you recommend for troubleshooting these issues?
> > > > > >
> > > > > > At this point, I believe that you have all the info you
> > > > > > requested which was provided in earlier emails.
> > > > > >
> > > > > > Let me know if you need additional info to proceed.
> > > > > >
> > > > > > Thanks.
> > > > > >
> > > > > > R/
> > > > > >  John
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > ________________________________________
> > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > > > > To: met_help at ucar.edu
> > > > > >     Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer (UNCLASSIFIED)
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > I'm sorry about the delay in getting back to you with an
> > > > > > update.
> > > > > >
> > > > > > My workstation is fully operational now. I have not had a
> > > > > > chance to load the remaining R packages.
> > > > > >
> > > > > > In answer to the questions you asked me:
> > > > > >
> > > > > > - database host and port. By default it is localhost:3306.
> > > > > > Will this apply to your server?
> > > > > >     YES
> > > > > > - database user name and password. This is for the user
that
> > > > > > would insert and retrieve date to/from database
> > > > > >     ruser / whitesands
> > > > > > - the path to Tomcat's webapp directory
> > > > > >     /opt/tomcat7/webapp
> > > > > > - the path where the R executables will be installed.
> > > > > >     /home/jraby/R/R-3.6.1/bin/
> > > > > > - path to Java. By default it is java. Will this apply to
> > > > > > your server?
> > > > > >     /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > > > > - path where the METViewer
> > > > > > executables should be located.
> > > > > >     /home/jraby/METViewer
> > > > > >
> > > > > > Let me know if you need other details.
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > Sent: Thursday, July 25, 2019 8:35 AM
> > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > >     Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > > (UNCLASSIFIED)
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > FYI, the issue with my workstation has been resolved and I
> > > > > > should receive it back in my office today. I will load the
> > > > > > remaining R packages which you listed in your earlier
email.
> > > > > > I'll have my system admin send you the info you requested
> > > > > > last week soon.
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > Sent: Friday, July 19, 2019 3:23 PM
> > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > >     Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > > (UNCLASSIFIED)
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > My system admin was able to change the permissions on the
> > > > > > library and all other directories in the install directory
> > > > > > and I was able to load the first R package successfully
at:
> > > > > > /home/jraby/R/R-3.6.1/library
> > > > > >
> > > > > > My system admin was working on obtaining the rest of the
> > > > > > info you requested.
> > > > > > Unfortunately, the workstation would not complete a reboot
> > > > > > and cannot be accessed now. He is looking into resolving
> > > > > > that problem now. Not sure whether the problem is
connected
> > > > > > with the installation of the new apps associated with
> > > > > > getting the system provisioned for METViewer, but it is
> > > > > > strangely coincident.
> > > > > >
> > > > > > I'll be back in touch on Monday to provide an update on
the
> > > > > > status.
> > > > > >
> > > > > > Have a great weekend!
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > > -----Original Message-----
> > > > > >  From: Tatiana Burek via RT
> > > > > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > Sent: Friday, July 19, 2019 12:57 PM
> > > > > >    To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > <john.w.raby2.civ at mail.mil>
> > > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > METviewer can work with personal libraries. Let me know
the
> > > > > > path and I add it to build.
> > > > > > Is it /home/jraby/R/R-3.6.1/library?
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > > Tatiana -
> > > > > > >
> > > > > > > Thanks for the info and guidance.
> > > > > > >
> > > > > > > I tried loading the R packages with user permissions,
but
> > > > > > > it can't due to an apparent permissions issue. See the
> > > > > > > following
> > > > > > > dialog:
> > > > > > > > install.packages('boot')
> > > > > > > Warning in install.packages("boot") :
> > > > > > >       'lib = "/home/jraby/R/R-3.6.1/library"' is not
> > > > > > > writable Would you like to use a personal library
instead?
> > > > > > > (yes/No/cancel)
> > > > > > >
> > > > > > > If I set up a "personal" library as they suggest, will
> > > > > > > METViewer have an issue?
> > > > > > >
> > > > > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > > > > >
> > > > > > > My system admin is working on getting answers to the
> > > > > > > remaining questions.
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > >
> > > > > > > ________________________________________
> > > > > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > Installing METviewer
> > > > > > >
> > > > > > > Hi John,
> > > > > > > Were you able to install the additional R packages?
> > > > > > >   I can build and provide you .war file as well as other
> > > > > > > executables.
> > > > > > > For that, I need some parameters  to build these files:
> > > > > > >   - database host and port. By default it is
> > > > > > > localhost:3306.
> > > > > > > Will this apply to your server?
> > > > > > >     - database user name and password. This is for the
> > > > > > > user that would insert and retrieve date to/from
database
> > > > > > >     - the path to Rscript executable. By default it is
> > > > > > > just Rscript.Will this apply to your server?
> > > > > > > - the path to Tomcat's webapp directory
> > > > > > > - the path where the executables will be installed.
> > > > > > >     - path to Java. By default it is java. Will this
apply
> > > > > > > to your server?
> > > > > > >
> > > > > > > Tatiana
> > > > > > >
> > > > > > >
> > > > > > > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil
> > > > > > > wrote:
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > At this time, the system admin has the following
> > > > > > > > installed on my
> > > > > > > > workstation:
> > > > > > > > MariaDB, Java, Tomcat, and R
> > > > > > > >
> > > > > > > > He says that a .war file is needed and that it must be
> > > > > > > > placed in a specific directory under Tomcat to allow
the
> > > > > > > > METViewer to deploy.
> > > > > > > >
> > > > > > > > Based on this, what is the next step?
> > > > > > > >
> > > > > > > > Thanks.
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > > >
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > >   From: Tatiana Burek via RT
> > > > > > > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > > > > >     To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > > Installing METviewer
> > > > > > > >
> > > > > > > > - METviewer will work with any version of Tomcat
> > > > > > > > starting from
> > > > > > > > Tomcat6
> > > > > > > > and
> > > > > > > > ending with  Tomcat8.
> > > > > > > > - You can install packages after R is installed.
> > > > > > > >   - METviewer supports MariaDB. We use this setup on
one
> > > > > > > > of our servers
> > > > > > > >   - By  modules I mean the load/batch portion of
> > > > > > > > METviewer ( the command line interface ) and the web
> > > > > > > > application.
> > > > > > > >
> > > > > > > > The batch/load module is basically a folder with
scripts
> > > > > > > > and executables. Web application comes as a .war file
> > > > > > > > that can be put under Tomcat.
> > > > > > > > Ant build script requires some setting variables and
> > > > > > > > builds both modules OR you would give me settings and
I
> > > > > > > > build modules for you.
> > > > > > > >
> > > > > > > > Tatiana
> > > > > > > >
> > > > > > > >
> > > > > > > > On Thu Jul 18 14:00:51 2019, john.w.raby2.civ at mail.mil
> > > > > > > > wrote:
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > My system admin has started the provisioning of my
> > > > > > > > > workstation.
> > > > > > > > >
> > > > > > > > > In answer to your question about Java the following
> > > > > > > > > shows the
> > > > > > > > > version:
> > > > > > > > > java -version
> > > > > > > > > java version "1.8.0_212"
> > > > > > > > > Java(TM) SE Runtime Environment (build 1.8.0_212-
b10)
> > > > > > > > > Java
> > > > > > > > > HotSpot(TM)
> > > > > > > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > > > > > > >
> > > > > > > > > Regards my preference for the running mode, I would
> > > > > > > > > like to use the web UI. Is there a version
requirement
> > > > > > > > > for Tomcat?
> > > > > > > > >
> > > > > > > > > He has installed MariaDB (myql for RHEL7) and is
> > > > > > > > > currently in the process of installing R. I assume
> > > > > > > > > that once R is installed that I can install the
> > > > > > > > > packages you mention below, correct?
> > > > > > > > >
> > > > > > > > > I'm not quite sure what METViewer modules are for
> > > > > > > > > answering your question about whether I want to
build
> > > > > > > > > them or have you do it.
> > > > > > > > > Could
> > > > > > > > > you provide more explanation or point me to where I
> > > > > > > > > can read more?
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > >   From: Tatiana Burek via RT
> > > > > > > > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > > > > >     To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > > > > Installing METviewer
> > > > > > > > >
> > > > > > > > > All active links contained in this email were
disabled.
> > > > > > > > >   Please verify the identity of the sender, and
> > > > > > > > > confirm  the  authenticity of all links contained
> > > > > > > > > within the  message prior to copying and pasting the
> > > > > > > > > address to a Web browser.
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > ----
> > > > > > > > >
> > > > > > > > > Hi John,
> > > > > > > > >       Are you planning to run METviewer using the
> > > > > > > > > batch  mode  only  (from the command  line with XML
> > > > > > > > > configuration) or with the web user interface
option?
> > > > > > > > > If you
> > > > > > > > >      need UI you need to install Tomcat. With Tomcat
> > > > > > > > > only,  you can  access UI using  Caution-
> > > > > > > > > Caution-Caution-Caution-
http://localhost:8080/metviewer.
> > > > > > > > >    For  more advanced settings you need to use
> > > > > > > > > Apache/Tomcat configurations.
> > > > > > > > > You also need to install R packages from R console:
> > > > > > > > > install.packages('boot')
> > > > > > > > > install.packages('plotrix')
> > > > > > > > > install.packages('gsl')
> > > > > > > > > install.packages('data.table')
> > > > > > > > > install.packages('verification')
> > > > > > > > >
> > > > > > > > > I can build METviewer modules for you or you can do
it
> > > > > > > > > by yourself.
> > > > > > > > > In
> > > > > > > > > this case you need to install Ant. Let me know your
> > > > > > > > > preference.
> > > > > > > > > What is the version of Java you going to use?
> > > > > > > > >
> > > > > > > > > Tatiana
> > > > > > > > >
> > > > > > > > > Tatiana
> > > > > > > > >
> > > > > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > > > > I am starting the preps to have METViewer
installed
> > > > > > > > > > on my local linux workstation. I already have Java
> > > > > > > > > > and need to have R and MySQL installed. Anything
> > > > > > > > > > else?
> > > > > > > > > >
> > > > > > > > > > R/
> > > > > > > > > > John
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > >
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



CLASSIFICATION: UNCLASSIFIED

------------------------------------------------
Subject: Installing METviewer
From: Tatiana Burek
Time: Wed Aug 07 14:35:19 2019

John,
I just sent you files.
I have a feeling that the HelpDeck system for some reason blocks
attachments.
Let me know if you reserve the files and if not I will send them to
you directly.

Tatiana

On Wed Aug 07 14:16:02 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> I checked my email and I don't see an email from you on 01 AUG. Not
> sure what happened. Could you resend it?
>
> R/
> John
>
> -----Original Message-----
>  From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> Sent: Wednesday, August 7, 2019 1:23 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> All active links contained in this email were disabled.  Please
verify
> the identity of the sender, and confirm the authenticity of all
links
> contained within the message prior to copying and pasting the
address
> to a Web browser.
>
>
>
>
> ----
>
> John,
> I sent you install files with the instructions on Aug.1. Have you
> receive them?
>
> Tatiana
> On Wed Aug 07 12:21:01 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > I like your idea. What is the impact of not having gsl?
> >
> > What is the next step to install METViewer?
> >
> > R/
> > John
> >
> > -----Original Message-----
> >  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > Sent: Wednesday, August 7, 2019 11:20 AM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > you can install METviewer without gsl package.
> >
> >
> > Tatiana
> > On Wed Aug 07 09:46:16 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > Thanks for taking a look at the error anyway. Do you have a
choice
> > > which gsl version gets installed? The loading of the R package
> > > apparently prescribes what version is installed. Is this your
> > > understanding?
> > >
> > > If I had the option of independently installing a different gsl
> > > version myself and was lucky enough to get a version which
> > > successfully compiles, would it be possible to have R use this
> > > version for the loading of the gsl package?
> > >
> > > Can  I proceed with installing METViewer  despite not having the
> > > gsl
> > > package loaded?
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > >  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > > Sent: Wednesday, August 7, 2019 9:31 AM
> > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > All active links contained in this email were disabled.  Please
> > > verify the identity of the sender, and confirm the authenticity
of
> > > all links contained within the message prior to copying and
pasting
> > > the address to a Web browser.
> > >
> > >
> > >
> > >
> > > ----
> > >
> > > John,
> > >
> > > I am not an expert in gsl installs and I can't replicate this
> > > problem on our servers.
> > > Looks like some gsl users have similar errors:
> > > Caution-Caution-https://github.com/RobinHankin/gsl/issues/4
> > > According to this thread the problem can be in GSL version.
Pleas
> > > take a look at the comments by user 'RobinHankin' about the
> > > multiple
> > > or old versons.
> > >
> > > Tatiana
> > >
> > > On Wed Aug 07 07:28:44 2019, john.w.raby2.civ at mail.mil wrote:
> > > > Tatiana -
> > > >
> > > > This morning I tried a couple of tests to see if I could load
the
> > > > gsl R package. First, I opened a terminal and just ran the
> > > > install
> > > > command in R as before but selected a different CRAN site for
> > > > downloading the package. The result was the same as the error
I
> > > > reported in my email below.
> > > >
> > > > Then I opened a new terminal and set the env variables you
> > > > described in an earlier email for bash. I then attempted to
> > > > install the gsl R package, but this time the dialog was
> > > > different.
> > > > Apparently it got past the issue which prevented execution
> > > > before,
> > > > and now it can't compile the package. See the following
dialog:
> > > >
> > > > trying URL
> > > > 'Caution-
> > > > Caution-
> > > > https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > > 1
> > > > -
> > > > 6.tar.gz'
> > > >   Content type 'application/octet-stream' length 189794 bytes
> > > > (185
> > > > KB) ==================================================
> > > > downloaded 185 KB
> > > >
> > > > * installing *source* package 'gsl' ...
> > > > ** package 'gsl' successfully unpacked and MD5 sums checked
> > > > ** using staged installation
> > > >    checking for gsl-config... /usr/bin/gsl-config checking if
GSL
> > > > version
> > > > > = 2.1... checking for gcc... gcc checking whether the C
> > > > > compiler
> > > > works... yes checking for C compiler default output file
name...
> > > > a.out
> > > > checking for suffix of executables...
> > > >   checking whether we are cross compiling... no checking for
> > > > suffix
> > > >  of object files... o checking whether we are using the GNU C
> > > > compiler...
> > > >   yes checking whether gcc accepts -g... yes checking for gcc
> > > > option to accept ISO C89... none needed yes
> > > > configure: creating ./config.status
> > > > config.status: creating src/Makevars
> > > > ** libs
> > > >    gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> > > >   -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> > > > airy.c
> > > > -o airy.o gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
> > > > -DNDEBUG
> > > >   -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> > > >  bessel.c  -o bessel.o gcc -std=gnu99
> > > > -I"/home/jraby/R/R-3.6.1/include"
> > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
> > > > -O2
> > > >  -c clausen.c -o clausen.o gcc -std=gnu99 -I"/home/jraby/R/R-
> > > > 3.6.1/include"
> > > > -DNDEBUG
> > > >   -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> > > >  coulomb.c -o coulomb.o gcc -std=gnu99 -I"/home/jraby/R/R-
> > > > 3.6.1/include"
> > > > -DNDEBUG
> > > >    -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> > > >  coupling.c -o coupling.o gcc -std=gnu99
> > > > -I"/home/jraby/R/R-3.6.1/include"
> > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
> > > > -O2
> > > >  -c dawson.c -o dawson.o gcc -std=gnu99 -I"/home/jraby/R/R-
> > > > 3.6.1/include"
> > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
> > > > -O2
> > > >  -c debye.c -o debye.o gcc -std=gnu99
> > > > -I"/home/jraby/R/R-3.6.1/include"
> > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
> > > > -O2
> > > >  -c dilog.c -o dilog.o gcc -std=gnu99
> > > > -I"/home/jraby/R/R-3.6.1/include"
> > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
> > > > -O2
> > > > -c ellint.c -o ellint.o
> > > > ellint.c: In function 'ellint_D_e':
> > > > ellint.c:82:5: warning: passing argument 4 of
'gsl_sf_ellint_D_e'
> > > > makes integer from pointer without a cast [enabled by default]
> > > >    status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
> > > > &result) ;
> > > >    ^
> > > > In file included from ellint.c:1:0:
> > > > /usr/include/gsl/gsl_sf_ellint.h:84:5: note: expected
> > > > 'gsl_mode_t'
> > > > but
> > > > argument is of type 'struct gsl_sf_result *'
> > > >   int gsl_sf_ellint_D_e(double phi, double k, double n,
> > > > gsl_mode_t
> > > > mode, gsl_sf_result * result);
> > > >    ^
> > > >   ellint.c:82:5: error: too few arguments to function
> > > > 'gsl_sf_ellint_D_e'
> > > >    status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
> > > > &result) ;
> > > >    ^
> > > > In file included from ellint.c:1:0:
> > > >    /usr/include/gsl/gsl_sf_ellint.h:84:5: note: declared here
> > > > int
> > > >  gsl_sf_ellint_D_e(double phi, double k, double n, gsl_mode_t
> > > > mode,
> > > > gsl_sf_result * result);
> > > >    ^
> > > > make: *** [ellint.o] Error 1
> > > > ERROR: compilation failed for package 'gsl'
> > > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > > >
> > > > The downloaded source packages are in
> > > >         '/home/jraby/tmp/RtmpO0i7Ze/downloaded_packages'
> > > > Updating HTML index of packages in '.Library'
> > > > Making 'packages.html' ... done
> > > > Warning message:
> > > > In install.packages("gsl") :
> > > >   installation of package 'gsl' had non-zero exit status
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > > ________________________________________
> > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > Sent: Tuesday, August 06, 2019 4:39 PM
> > > > To: met_help at ucar.edu
> > > >    Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > Installing METviewer (UNCLASSIFIED)
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > My sysadm installed gsl-devel using the command you provided.
I
> > > > just tried to load the R package, but it has the same error:
> > > >
> > > > > install.packages('gsl')
> > > > --- Please select a CRAN mirror for use in this session --- I
> > > > selected
> > > > 63 (USA MI)
> > > >
> > > > trying URL
> > > > 'Caution-
> > > > Caution-
> > > > https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > > 1
> > > > -
> > > > 6.tar.gz'
> > > >   Content type 'application/octet-stream' length 189794 bytes
> > > > (185
> > > > KB) ==================================================
> > > > downloaded 185 KB
> > > >
> > > > * installing *source* package 'gsl' ...
> > > > ** package 'gsl' successfully unpacked and MD5 sums checked
> > > > ** using staged installation
> > > >    ERROR: 'configure' exists but is not executable -- see the
'R
> > > > Installation and Administration Manual'
> > > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > > >
> > > > The downloaded source packages are in
> > > >         '/tmp/RtmpFotJTN/downloaded_packages'
> > > > Updating HTML index of packages in '.Library'
> > > > Making 'packages.html' ... done
> > > > Warning message:
> > > > In install.packages("gsl") :
> > > >   installation of package 'gsl' had non-zero exit status
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > >
> > > > -----Original Message-----
> > > >  From: Tatiana Burek via RT
> > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > Sent: Tuesday, August 6, 2019 3:17 PM
> > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > All active links contained in this email were disabled.
Please
> > > > verify the identity of the sender, and confirm the
authenticity
> > > > of
> > > > all links contained within the message prior to copying and
> > > > pasting the address to a Web browser.
> > > >
> > > >
> > > >
> > > >
> > > > ----
> > > >
> > > > I checked R gsl dependencies and it does require gsl-devel To
> > > > install gsl-devel you (or your sys admin)  need to run yum
> > > > install
> > > > gsl-devel
> > > >
> > > > Tatiana
> > > >
> > > > On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > So, gsl itself is not required in order to have a successful
> > > > > install of the R package gsl, correct?
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > > -----Original Message-----
> > > > >   From: Tatiana Burek via RT
> > > > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > Sent: Tuesday, August 6, 2019 2:50 PM
> > > > >    To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing
> > > > > METviewer
> > > > >
> > > > > gsl and "R package gsl" are different libraries and are
needed
> > > > > to be installed separately.
> > > > > I'm not sure that  there is a dependency between of them but
if
> > > > > there is than R gsl would depend on the standard gsl.
> > > > >
> > > > > Tatiana
> > > > >
> > > > > On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > Thanks for your guidance on resolving the issues. I will
> > > > > > consult with my sysadm and get back to you soon.
> > > > > >
> > > > > > Regards the gsl package, I read about the eclv plot and I
> > > > > > don't have an interest at the present time. Was the
loading
> > > > > > of
> > > > > > the gsl package supposed to do an install of the gsl? I
have
> > > > > > installed gsl as part of the provisioning required prior
to
> > > > > > installing MET
> > > > > > V5.2 on the HPC. If I was able to do that on my
workstation
> > > > > > and was successful, would that alleviate the problem and
> > > > > > allow
> > > > > > the package to be installed?
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > >
> > > > > > -----Original Message-----
> > > > > >   From: Tatiana Burek via RT
> > > > > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > Sent: Tuesday, August 6, 2019 2:13 PM
> > > > > >    To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > <john.w.raby2.civ at mail.mil>
> > > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > John,
> > > > > >
> > > > > > By default, R uses the /tmp directory to install packages.
> > > > > > The
> > > > > > /tmp directory is often marked as “noexec”. This means
that
> > > > > > no
> > > > > > file under /tmp can ever be executed.
> > > > > > To solve this problem you need  to set the TMPDIR
environment
> > > > > > variable:
> > > > > > For csh shell:
> > > > > > mkdir ~/tmp
> > > > > > setenv TMPDIR ~/tmp
> > > > > >
> > > > > > for bash:
> > > > > > mkdir ~/tmp
> > > > > > export TMPDIR=~/tmp
> > > > > >
> > > > > > gsl package is only needed for Eclv plot. If you are not
> > > > > > planning to create these plots you don't need to install
this
> > > > > > package.
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > >
> > > > > >
> > > > > > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > > Tatiana -
> > > > > > >
> > > > > > > Today I was able to resume the loading of the R packages
> > > > > > > you
> > > > > > > specified in an earlier email. There were issues
> > > > > > > encountered
> > > > > > > when loading 'gsl"
> > > > > > > and 'verification'. I'm not sure where to start
debugging
> > > > > > > the issues.
> > > > > > > I captured the screen dialog so you can see more
specific
> > > > > > > info about them. See attached text file.
> > > > > > >
> > > > > > > The R packages which appear to have loaded successfully
> > > > > > > are:
> > > > > > > 'boot', 'plotrix', and 'data.table'
> > > > > > >
> > > > > > > What do you recommend for troubleshooting these issues?
> > > > > > >
> > > > > > > At this point, I believe that you have all the info you
> > > > > > > requested which was provided in earlier emails.
> > > > > > >
> > > > > > > Let me know if you need additional info to proceed.
> > > > > > >
> > > > > > > Thanks.
> > > > > > >
> > > > > > > R/
> > > > > > >  John
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > ________________________________________
> > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > > > > > To: met_help at ucar.edu
> > > > > > >      Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > > Installing METviewer (UNCLASSIFIED)
> > > > > > >
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > > Tatiana -
> > > > > > >
> > > > > > > I'm sorry about the delay in getting back to you with an
> > > > > > > update.
> > > > > > >
> > > > > > > My workstation is fully operational now. I have not had
a
> > > > > > > chance to load the remaining R packages.
> > > > > > >
> > > > > > > In answer to the questions you asked me:
> > > > > > >
> > > > > > > - database host and port. By default it is
localhost:3306.
> > > > > > > Will this apply to your server?
> > > > > > >     YES
> > > > > > >  - database user name and password. This is for the user
> > > > > > > that
> > > > > > > would insert and retrieve date to/from database
> > > > > > >     ruser / whitesands
> > > > > > > - the path to Tomcat's webapp directory
> > > > > > >     /opt/tomcat7/webapp
> > > > > > > - the path where the R executables will be installed.
> > > > > > >     /home/jraby/R/R-3.6.1/bin/
> > > > > > >  - path to Java. By default it is java. Will this apply
to
> > > > > > > your server?
> > > > > > >     /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > > > > > - path where the METViewer
> > > > > > > executables should be located.
> > > > > > >     /home/jraby/METViewer
> > > > > > >
> > > > > > > Let me know if you need other details.
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > Sent: Thursday, July 25, 2019 8:35 AM
> > > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > > >      Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > > Installing METviewer
> > > > > > > (UNCLASSIFIED)
> > > > > > >
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > > Tatiana -
> > > > > > >
> > > > > > > FYI, the issue with my workstation has been resolved and
I
> > > > > > > should receive it back in my office today. I will load
the
> > > > > > > remaining R packages which you listed in your earlier
> > > > > > > email.
> > > > > > > I'll have my system admin send you the info you
requested
> > > > > > > last week soon.
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > Sent: Friday, July 19, 2019 3:23 PM
> > > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > > >      Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > > Installing METviewer
> > > > > > > (UNCLASSIFIED)
> > > > > > >
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > > Tatiana -
> > > > > > >
> > > > > > > My system admin was able to change the permissions on
the
> > > > > > > library and all other directories in the install
directory
> > > > > > > and I was able to load the first R package successfully
at:
> > > > > > > /home/jraby/R/R-3.6.1/library
> > > > > > >
> > > > > > > My system admin was working on obtaining the rest of the
> > > > > > > info you requested.
> > > > > > > Unfortunately, the workstation would not complete a
reboot
> > > > > > > and cannot be accessed now. He is looking into resolving
> > > > > > > that problem now. Not sure whether the problem is
connected
> > > > > > > with the installation of the new apps associated with
> > > > > > > getting the system provisioned for METViewer, but it is
> > > > > > > strangely coincident.
> > > > > > >
> > > > > > > I'll be back in touch on Monday to provide an update on
the
> > > > > > > status.
> > > > > > >
> > > > > > > Have a great weekend!
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > >  From: Tatiana Burek via RT
> > > > > > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > > Sent: Friday, July 19, 2019 12:57 PM
> > > > > > >     To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > Installing METviewer
> > > > > > >
> > > > > > > METviewer can work with personal libraries. Let me know
the
> > > > > > > path and I add it to build.
> > > > > > > Is it /home/jraby/R/R-3.6.1/library?
> > > > > > >
> > > > > > > Tatiana
> > > > > > >
> > > > > > > On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil
> > > > > > > wrote:
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > Thanks for the info and guidance.
> > > > > > > >
> > > > > > > > I tried loading the R packages with user permissions,
but
> > > > > > > > it can't due to an apparent permissions issue. See the
> > > > > > > > following
> > > > > > > > dialog:
> > > > > > > > > install.packages('boot')
> > > > > > > > Warning in install.packages("boot") :
> > > > > > > >        'lib = "/home/jraby/R/R-3.6.1/library"' is not
> > > > > > > > writable Would you like to use a personal library
> > > > > > > > instead?
> > > > > > > > (yes/No/cancel)
> > > > > > > >
> > > > > > > > If I set up a "personal" library as they suggest, will
> > > > > > > > METViewer have an issue?
> > > > > > > >
> > > > > > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > > > > > >
> > > > > > > > My system admin is working on getting answers to the
> > > > > > > > remaining questions.
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > > >
> > > > > > > >
> > > > > > > > ________________________________________
> > > > > > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > > > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > > > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > > > Installing METviewer
> > > > > > > >
> > > > > > > > Hi John,
> > > > > > > > Were you able to install the additional R packages?
> > > > > > > >    I can build and provide you .war file as well as
other
> > > > > > > > executables.
> > > > > > > > For that, I need some parameters  to build these
files:
> > > > > > > >    - database host and port. By default it is
> > > > > > > > localhost:3306.
> > > > > > > > Will this apply to your server?
> > > > > > > >      - database user name and password. This is for
the
> > > > > > > > user that would insert and retrieve date to/from
database
> > > > > > > >      - the path to Rscript executable. By default it
is
> > > > > > > > just Rscript.Will this apply to your server?
> > > > > > > > - the path to Tomcat's webapp directory
> > > > > > > > - the path where the executables will be installed.
> > > > > > > >      - path to Java. By default it is java. Will this
> > > > > > > > apply
> > > > > > > > to your server?
> > > > > > > >
> > > > > > > > Tatiana
> > > > > > > >
> > > > > > > >
> > > > > > > > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil
> > > > > > > > wrote:
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > At this time, the system admin has the following
> > > > > > > > > installed on my
> > > > > > > > > workstation:
> > > > > > > > > MariaDB, Java, Tomcat, and R
> > > > > > > > >
> > > > > > > > > He says that a .war file is needed and that it must
be
> > > > > > > > > placed in a specific directory under Tomcat to allow
> > > > > > > > > the
> > > > > > > > > METViewer to deploy.
> > > > > > > > >
> > > > > > > > > Based on this, what is the next step?
> > > > > > > > >
> > > > > > > > > Thanks.
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > >    From: Tatiana Burek via RT
> > > > > > > > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > > > > > >      To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > > > > Installing METviewer
> > > > > > > > >
> > > > > > > > > - METviewer will work with any version of Tomcat
> > > > > > > > > starting from
> > > > > > > > > Tomcat6
> > > > > > > > > and
> > > > > > > > > ending with  Tomcat8.
> > > > > > > > > - You can install packages after R is installed.
> > > > > > > > >   - METviewer supports MariaDB. We use this setup on
> > > > > > > > > one
> > > > > > > > > of our servers
> > > > > > > > >   - By  modules I mean the load/batch portion of
> > > > > > > > > METviewer ( the command line interface ) and the web
> > > > > > > > > application.
> > > > > > > > >
> > > > > > > > > The batch/load module is basically a folder with
> > > > > > > > > scripts
> > > > > > > > > and executables. Web application comes as a .war
file
> > > > > > > > > that can be put under Tomcat.
> > > > > > > > > Ant build script requires some setting variables and
> > > > > > > > > builds both modules OR you would give me settings
and I
> > > > > > > > > build modules for you.
> > > > > > > > >
> > > > > > > > > Tatiana
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > On Thu Jul 18 14:00:51 2019,
john.w.raby2.civ at mail.mil
> > > > > > > > > wrote:
> > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > >
> > > > > > > > > > Tatiana -
> > > > > > > > > >
> > > > > > > > > > My system admin has started the provisioning of my
> > > > > > > > > > workstation.
> > > > > > > > > >
> > > > > > > > > > In answer to your question about Java the
following
> > > > > > > > > > shows the
> > > > > > > > > > version:
> > > > > > > > > > java -version
> > > > > > > > > > java version "1.8.0_212"
> > > > > > > > > > Java(TM) SE Runtime Environment (build 1.8.0_212-
b10)
> > > > > > > > > > Java
> > > > > > > > > > HotSpot(TM)
> > > > > > > > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > > > > > > > >
> > > > > > > > > > Regards my preference for the running mode, I
would
> > > > > > > > > > like to use the web UI. Is there a version
> > > > > > > > > > requirement
> > > > > > > > > > for Tomcat?
> > > > > > > > > >
> > > > > > > > > > He has installed MariaDB (myql for RHEL7) and is
> > > > > > > > > > currently in the process of installing R. I assume
> > > > > > > > > > that once R is installed that I can install the
> > > > > > > > > > packages you mention below, correct?
> > > > > > > > > >
> > > > > > > > > > I'm not quite sure what METViewer modules are for
> > > > > > > > > > answering your question about whether I want to
build
> > > > > > > > > > them or have you do it.
> > > > > > > > > > Could
> > > > > > > > > > you provide more explanation or point me to where
I
> > > > > > > > > > can read more?
> > > > > > > > > >
> > > > > > > > > > R/
> > > > > > > > > > John
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > >    From: Tatiana Burek via RT
> > > > > > > > > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > > > > > >      To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > > > #91137]
> > > > > > > > > > Installing METviewer
> > > > > > > > > >
> > > > > > > > > > All active links contained in this email were
> > > > > > > > > > disabled.
> > > > > > > > > >    Please verify the identity of the sender, and
> > > > > > > > > >  confirm  the  authenticity of all links contained
> > > > > > > > > >  within the  message prior to copying and pasting
the
> > > > > > > > > > address to a Web browser.
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > ----
> > > > > > > > > >
> > > > > > > > > > Hi John,
> > > > > > > > > >        Are you planning to run METviewer using the
> > > > > > > > > > batch  mode  only  (from the command  line with
XML
> > > > > > > > > > configuration) or with the web user interface
option?
> > > > > > > > > > If you
> > > > > > > > > >        need UI you need to install Tomcat. With
> > > > > > > > > > Tomcat
> > > > > > > > > >  only,  you can  access UI using  Caution-
> > > > > > > > > > Caution-Caution-Caution-
> > > > > > > > > > http://localhost:8080/metviewer.
> > > > > > > > > >     For  more advanced settings you need to use
> > > > > > > > > > Apache/Tomcat configurations.
> > > > > > > > > > You also need to install R packages from R
console:
> > > > > > > > > > install.packages('boot')
> > > > > > > > > > install.packages('plotrix')
> > > > > > > > > > install.packages('gsl')
> > > > > > > > > > install.packages('data.table')
> > > > > > > > > > install.packages('verification')
> > > > > > > > > >
> > > > > > > > > > I can build METviewer modules for you or you can
do
> > > > > > > > > > it
> > > > > > > > > > by yourself.
> > > > > > > > > > In
> > > > > > > > > > this case you need to install Ant. Let me know
your
> > > > > > > > > > preference.
> > > > > > > > > > What is the version of Java you going to use?
> > > > > > > > > >
> > > > > > > > > > Tatiana
> > > > > > > > > >
> > > > > > > > > > Tatiana
> > > > > > > > > >
> > > > > > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > > > > > I am starting the preps to have METViewer
installed
> > > > > > > > > > > on my local linux workstation. I already have
Java
> > > > > > > > > > > and need to have R and MySQL installed. Anything
> > > > > > > > > > > else?
> > > > > > > > > > >
> > > > > > > > > > > R/
> > > > > > > > > > > John
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > >
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



------------------------------------------------
Subject: Installing METviewer
From: Raby, John W USA CIV
Time: Wed Aug 07 14:48:04 2019

CLASSIFICATION: UNCLASSIFIED

Tatiana -

The files are not attached to the email below.

R/
John

-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Wednesday, August 7, 2019 2:35 PM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

All active links contained in this email were disabled.  Please verify
the identity of the sender, and confirm the authenticity of all links
contained within the message prior to copying and pasting the address
to a Web browser.




----

John,
I just sent you files.
I have a feeling that the HelpDeck system for some reason blocks
attachments.
Let me know if you reserve the files and if not I will send them to
you directly.

Tatiana

On Wed Aug 07 14:16:02 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> I checked my email and I don't see an email from you on 01 AUG. Not
> sure what happened. Could you resend it?
>
> R/
> John
>
> -----Original Message-----
>  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> Sent: Wednesday, August 7, 2019 1:23 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> All active links contained in this email were disabled.  Please
verify
> the identity of the sender, and confirm the authenticity of all
links
> contained within the message prior to copying and pasting the
address
> to a Web browser.
>
>
>
>
> ----
>
> John,
> I sent you install files with the instructions on Aug.1. Have you
> receive them?
>
> Tatiana
> On Wed Aug 07 12:21:01 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > I like your idea. What is the impact of not having gsl?
> >
> > What is the next step to install METViewer?
> >
> > R/
> > John
> >
> > -----Original Message-----
> >  From: Tatiana Burek via RT
> > [Caution-Caution-mailto:met_help at ucar.edu]
> > Sent: Wednesday, August 7, 2019 11:20 AM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > you can install METviewer without gsl package.
> >
> >
> > Tatiana
> > On Wed Aug 07 09:46:16 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > Thanks for taking a look at the error anyway. Do you have a
choice
> > > which gsl version gets installed? The loading of the R package
> > > apparently prescribes what version is installed. Is this your
> > > understanding?
> > >
> > > If I had the option of independently installing a different gsl
> > > version myself and was lucky enough to get a version which
> > > successfully compiles, would it be possible to have R use this
> > > version for the loading of the gsl package?
> > >
> > > Can  I proceed with installing METViewer  despite not having the
> > > gsl package loaded?
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > >  From: Tatiana Burek via RT
> > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > Sent: Wednesday, August 7, 2019 9:31 AM
> > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > All active links contained in this email were disabled.  Please
> > > verify the identity of the sender, and confirm the authenticity
of
> > > all links contained within the message prior to copying and
> > > pasting the address to a Web browser.
> > >
> > >
> > >
> > >
> > > ----
> > >
> > > John,
> > >
> > > I am not an expert in gsl installs and I can't replicate this
> > > problem on our servers.
> > > Looks like some gsl users have similar errors:
> > > Caution-Caution-Caution-
https://github.com/RobinHankin/gsl/issues/
> > > 4 According to this thread the problem can be in GSL version.
> > > Pleas take a look at the comments by user 'RobinHankin' about
the
> > > multiple or old versons.
> > >
> > > Tatiana
> > >
> > > On Wed Aug 07 07:28:44 2019, john.w.raby2.civ at mail.mil wrote:
> > > > Tatiana -
> > > >
> > > > This morning I tried a couple of tests to see if I could load
> > > > the gsl R package. First, I opened a terminal and just ran the
> > > > install command in R as before but selected a different CRAN
> > > > site for downloading the package. The result was the same as
the
> > > > error I reported in my email below.
> > > >
> > > > Then I opened a new terminal and set the env variables you
> > > > described in an earlier email for bash. I then attempted to
> > > > install the gsl R package, but this time the dialog was
> > > > different.
> > > > Apparently it got past the issue which prevented execution
> > > > before, and now it can't compile the package. See the
following
> > > > dialog:
> > > >
> > > > trying URL
> > > > 'Caution-
> > > > Caution-
> > > > Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > > 1
> > > > -
> > > > 6.tar.gz'
> > > >   Content type 'application/octet-stream' length 189794 bytes
> > > > (185
> > > > KB) ==================================================
> > > > downloaded 185 KB
> > > >
> > > > * installing *source* package 'gsl' ...
> > > > ** package 'gsl' successfully unpacked and MD5 sums checked
> > > > ** using staged installation
> > > >    checking for gsl-config... /usr/bin/gsl-config checking if
> > > > GSL version
> > > > > = 2.1... checking for gcc... gcc checking whether the C
> > > > > compiler
> > > > works... yes checking for C compiler default output file
name...
> > > > a.out
> > > > checking for suffix of executables...
> > > >   checking whether we are cross compiling... no checking for
> > > > suffix  of object files... o checking whether we are using the
> > > > GNU C compiler...
> > > >   yes checking whether gcc accepts -g... yes checking for gcc
> > > > option to accept ISO C89... none needed yes
> > > > configure: creating ./config.status
> > > > config.status: creating src/Makevars
> > > > ** libs
> > > >    gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> > > >   -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> > > > airy.c -o airy.o gcc -std=gnu99
> > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > -DNDEBUG
> > > >   -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> > > > bessel.c  -o bessel.o gcc -std=gnu99
> > > > -I"/home/jraby/R/R-3.6.1/include"
> > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
> > > > -O2
> > > >  -c clausen.c -o clausen.o gcc -std=gnu99 -I"/home/jraby/R/R-
> > > > 3.6.1/include"
> > > > -DNDEBUG
> > > >   -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> > > > coulomb.c -o coulomb.o gcc -std=gnu99 -I"/home/jraby/R/R-
> > > > 3.6.1/include"
> > > > -DNDEBUG
> > > >    -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2  -c
> > > > coupling.c -o coupling.o gcc -std=gnu99
> > > > -I"/home/jraby/R/R-3.6.1/include"
> > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
> > > > -O2
> > > >  -c dawson.c -o dawson.o gcc -std=gnu99 -I"/home/jraby/R/R-
> > > > 3.6.1/include"
> > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
> > > > -O2
> > > >  -c debye.c -o debye.o gcc -std=gnu99
> > > > -I"/home/jraby/R/R-3.6.1/include"
> > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
> > > > -O2
> > > >  -c dilog.c -o dilog.o gcc -std=gnu99
> > > > -I"/home/jraby/R/R-3.6.1/include"
> > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic  -g
> > > > -O2
> > > > -c ellint.c -o ellint.o
> > > > ellint.c: In function 'ellint_D_e':
> > > > ellint.c:82:5: warning: passing argument 4 of
'gsl_sf_ellint_D_e'
> > > > makes integer from pointer without a cast [enabled by default]
> > > >    status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
> > > > &result) ;
> > > >    ^
> > > > In file included from ellint.c:1:0:
> > > > /usr/include/gsl/gsl_sf_ellint.h:84:5: note: expected
> > > > 'gsl_mode_t'
> > > > but
> > > > argument is of type 'struct gsl_sf_result *'
> > > >   int gsl_sf_ellint_D_e(double phi, double k, double n,
> > > > gsl_mode_t mode, gsl_sf_result * result);
> > > >    ^
> > > >   ellint.c:82:5: error: too few arguments to function
> > > > 'gsl_sf_ellint_D_e'
> > > >    status[i] = gsl_sf_ellint_D_e(phi[i], k[i], sf_mode[*mode],
> > > > &result) ;
> > > >    ^
> > > > In file included from ellint.c:1:0:
> > > >    /usr/include/gsl/gsl_sf_ellint.h:84:5: note: declared here
> > > > int  gsl_sf_ellint_D_e(double phi, double k, double n,
> > > > gsl_mode_t mode, gsl_sf_result * result);
> > > >    ^
> > > > make: *** [ellint.o] Error 1
> > > > ERROR: compilation failed for package 'gsl'
> > > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > > >
> > > > The downloaded source packages are in
> > > >         '/home/jraby/tmp/RtmpO0i7Ze/downloaded_packages'
> > > > Updating HTML index of packages in '.Library'
> > > > Making 'packages.html' ... done
> > > > Warning message:
> > > > In install.packages("gsl") :
> > > >   installation of package 'gsl' had non-zero exit status
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > > ________________________________________
> > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > Sent: Tuesday, August 06, 2019 4:39 PM
> > > > To: met_help at ucar.edu
> > > >    Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > Installing METviewer (UNCLASSIFIED)
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > My sysadm installed gsl-devel using the command you provided.
I
> > > > just tried to load the R package, but it has the same error:
> > > >
> > > > > install.packages('gsl')
> > > > --- Please select a CRAN mirror for use in this session --- I
> > > > selected
> > > > 63 (USA MI)
> > > >
> > > > trying URL
> > > > 'Caution-
> > > > Caution-
> > > > Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > > 1
> > > > -
> > > > 6.tar.gz'
> > > >   Content type 'application/octet-stream' length 189794 bytes
> > > > (185
> > > > KB) ==================================================
> > > > downloaded 185 KB
> > > >
> > > > * installing *source* package 'gsl' ...
> > > > ** package 'gsl' successfully unpacked and MD5 sums checked
> > > > ** using staged installation
> > > >    ERROR: 'configure' exists but is not executable -- see the
'R
> > > > Installation and Administration Manual'
> > > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > > >
> > > > The downloaded source packages are in
> > > >         '/tmp/RtmpFotJTN/downloaded_packages'
> > > > Updating HTML index of packages in '.Library'
> > > > Making 'packages.html' ... done
> > > > Warning message:
> > > > In install.packages("gsl") :
> > > >   installation of package 'gsl' had non-zero exit status
> > > >
> > > > R/
> > > > John
> > > >
> > > >
> > > >
> > > > -----Original Message-----
> > > >  From: Tatiana Burek via RT
> > > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > Sent: Tuesday, August 6, 2019 3:17 PM
> > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > All active links contained in this email were disabled.
Please
> > > > verify the identity of the sender, and confirm the
authenticity
> > > > of all links contained within the message prior to copying and
> > > > pasting the address to a Web browser.
> > > >
> > > >
> > > >
> > > >
> > > > ----
> > > >
> > > > I checked R gsl dependencies and it does require gsl-devel To
> > > > install gsl-devel you (or your sys admin)  need to run yum
> > > > install gsl-devel
> > > >
> > > > Tatiana
> > > >
> > > > On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > So, gsl itself is not required in order to have a successful
> > > > > install of the R package gsl, correct?
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > > -----Original Message-----
> > > > >   From: Tatiana Burek via RT
> > > > > [Caution-Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > Sent: Tuesday, August 6, 2019 2:50 PM
> > > > >    To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer
> > > > >
> > > > > gsl and "R package gsl" are different libraries and are
needed
> > > > > to be installed separately.
> > > > > I'm not sure that  there is a dependency between of them but
> > > > > if there is than R gsl would depend on the standard gsl.
> > > > >
> > > > > Tatiana
> > > > >
> > > > > On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > Thanks for your guidance on resolving the issues. I will
> > > > > > consult with my sysadm and get back to you soon.
> > > > > >
> > > > > > Regards the gsl package, I read about the eclv plot and I
> > > > > > don't have an interest at the present time. Was the
loading
> > > > > > of the gsl package supposed to do an install of the gsl? I
> > > > > > have installed gsl as part of the provisioning required
> > > > > > prior to installing MET
> > > > > > V5.2 on the HPC. If I was able to do that on my
workstation
> > > > > > and was successful, would that alleviate the problem and
> > > > > > allow the package to be installed?
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > >
> > > > > > -----Original Message-----
> > > > > >   From: Tatiana Burek via RT
> > > > > > [Caution-Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > Sent: Tuesday, August 6, 2019 2:13 PM
> > > > > >    To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > <john.w.raby2.civ at mail.mil>
> > > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > John,
> > > > > >
> > > > > > By default, R uses the /tmp directory to install packages.
> > > > > > The
> > > > > > /tmp directory is often marked as “noexec”. This means
that
> > > > > > no file under /tmp can ever be executed.
> > > > > > To solve this problem you need  to set the TMPDIR
> > > > > > environment
> > > > > > variable:
> > > > > > For csh shell:
> > > > > > mkdir ~/tmp
> > > > > > setenv TMPDIR ~/tmp
> > > > > >
> > > > > > for bash:
> > > > > > mkdir ~/tmp
> > > > > > export TMPDIR=~/tmp
> > > > > >
> > > > > > gsl package is only needed for Eclv plot. If you are not
> > > > > > planning to create these plots you don't need to install
> > > > > > this package.
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > >
> > > > > >
> > > > > > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > > Tatiana -
> > > > > > >
> > > > > > > Today I was able to resume the loading of the R packages
> > > > > > > you specified in an earlier email. There were issues
> > > > > > > encountered when loading 'gsl"
> > > > > > > and 'verification'. I'm not sure where to start
debugging
> > > > > > > the issues.
> > > > > > > I captured the screen dialog so you can see more
specific
> > > > > > > info about them. See attached text file.
> > > > > > >
> > > > > > > The R packages which appear to have loaded successfully
> > > > > > > are:
> > > > > > > 'boot', 'plotrix', and 'data.table'
> > > > > > >
> > > > > > > What do you recommend for troubleshooting these issues?
> > > > > > >
> > > > > > > At this point, I believe that you have all the info you
> > > > > > > requested which was provided in earlier emails.
> > > > > > >
> > > > > > > Let me know if you need additional info to proceed.
> > > > > > >
> > > > > > > Thanks.
> > > > > > >
> > > > > > > R/
> > > > > > >  John
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > ________________________________________
> > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > > > > > To: met_help at ucar.edu
> > > > > > >      Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > #91137] Installing METviewer (UNCLASSIFIED)
> > > > > > >
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > > Tatiana -
> > > > > > >
> > > > > > > I'm sorry about the delay in getting back to you with an
> > > > > > > update.
> > > > > > >
> > > > > > > My workstation is fully operational now. I have not had
a
> > > > > > > chance to load the remaining R packages.
> > > > > > >
> > > > > > > In answer to the questions you asked me:
> > > > > > >
> > > > > > > - database host and port. By default it is
localhost:3306.
> > > > > > > Will this apply to your server?
> > > > > > >     YES
> > > > > > >  - database user name and password. This is for the user
> > > > > > > that would insert and retrieve date to/from database
> > > > > > >     ruser / whitesands
> > > > > > > - the path to Tomcat's webapp directory
> > > > > > >     /opt/tomcat7/webapp
> > > > > > > - the path where the R executables will be installed.
> > > > > > >     /home/jraby/R/R-3.6.1/bin/
> > > > > > >  - path to Java. By default it is java. Will this apply
to
> > > > > > > your server?
> > > > > > >     /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > > > > > - path where the METViewer executables should be
located.
> > > > > > >     /home/jraby/METViewer
> > > > > > >
> > > > > > > Let me know if you need other details.
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > Sent: Thursday, July 25, 2019 8:35 AM
> > > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > > >      Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > #91137] Installing METviewer
> > > > > > > (UNCLASSIFIED)
> > > > > > >
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > > Tatiana -
> > > > > > >
> > > > > > > FYI, the issue with my workstation has been resolved and
I
> > > > > > > should receive it back in my office today. I will load
the
> > > > > > > remaining R packages which you listed in your earlier
> > > > > > > email.
> > > > > > > I'll have my system admin send you the info you
requested
> > > > > > > last week soon.
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > Sent: Friday, July 19, 2019 3:23 PM
> > > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > > >      Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > #91137] Installing METviewer
> > > > > > > (UNCLASSIFIED)
> > > > > > >
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > > Tatiana -
> > > > > > >
> > > > > > > My system admin was able to change the permissions on
the
> > > > > > > library and all other directories in the install
directory
> > > > > > > and I was able to load the first R package successfully
at:
> > > > > > > /home/jraby/R/R-3.6.1/library
> > > > > > >
> > > > > > > My system admin was working on obtaining the rest of the
> > > > > > > info you requested.
> > > > > > > Unfortunately, the workstation would not complete a
reboot
> > > > > > > and cannot be accessed now. He is looking into resolving
> > > > > > > that problem now. Not sure whether the problem is
> > > > > > > connected with the installation of the new apps
associated
> > > > > > > with getting the system provisioned for METViewer, but
it
> > > > > > > is strangely coincident.
> > > > > > >
> > > > > > > I'll be back in touch on Monday to provide an update on
> > > > > > > the status.
> > > > > > >
> > > > > > > Have a great weekend!
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > >  From: Tatiana Burek via RT
> > > > > > > [Caution-Caution-Caution-Caution-
mailto:met_help at ucar.edu]
> > > > > > > Sent: Friday, July 19, 2019 12:57 PM
> > > > > > >     To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > Installing METviewer
> > > > > > >
> > > > > > > METviewer can work with personal libraries. Let me know
> > > > > > > the path and I add it to build.
> > > > > > > Is it /home/jraby/R/R-3.6.1/library?
> > > > > > >
> > > > > > > Tatiana
> > > > > > >
> > > > > > > On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil
> > > > > > > wrote:
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > Thanks for the info and guidance.
> > > > > > > >
> > > > > > > > I tried loading the R packages with user permissions,
> > > > > > > > but it can't due to an apparent permissions issue. See
> > > > > > > > the following
> > > > > > > > dialog:
> > > > > > > > > install.packages('boot')
> > > > > > > > Warning in install.packages("boot") :
> > > > > > > >        'lib = "/home/jraby/R/R-3.6.1/library"' is not
> > > > > > > > writable Would you like to use a personal library
> > > > > > > > instead?
> > > > > > > > (yes/No/cancel)
> > > > > > > >
> > > > > > > > If I set up a "personal" library as they suggest, will
> > > > > > > > METViewer have an issue?
> > > > > > > >
> > > > > > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > > > > > >
> > > > > > > > My system admin is working on getting answers to the
> > > > > > > > remaining questions.
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > > >
> > > > > > > >
> > > > > > > > ________________________________________
> > > > > > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > > > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > > > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > > > Installing METviewer
> > > > > > > >
> > > > > > > > Hi John,
> > > > > > > > Were you able to install the additional R packages?
> > > > > > > >    I can build and provide you .war file as well as
> > > > > > > > other executables.
> > > > > > > > For that, I need some parameters  to build these
files:
> > > > > > > >    - database host and port. By default it is
> > > > > > > > localhost:3306.
> > > > > > > > Will this apply to your server?
> > > > > > > >      - database user name and password. This is for
the
> > > > > > > > user that would insert and retrieve date to/from
database
> > > > > > > >      - the path to Rscript executable. By default it
is
> > > > > > > > just Rscript.Will this apply to your server?
> > > > > > > > - the path to Tomcat's webapp directory
> > > > > > > > - the path where the executables will be installed.
> > > > > > > >      - path to Java. By default it is java. Will this
> > > > > > > > apply to your server?
> > > > > > > >
> > > > > > > > Tatiana
> > > > > > > >
> > > > > > > >
> > > > > > > > On Fri Jul 19 10:39:13 2019, john.w.raby2.civ at mail.mil
> > > > > > > > wrote:
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > At this time, the system admin has the following
> > > > > > > > > installed on my
> > > > > > > > > workstation:
> > > > > > > > > MariaDB, Java, Tomcat, and R
> > > > > > > > >
> > > > > > > > > He says that a .war file is needed and that it must
be
> > > > > > > > > placed in a specific directory under Tomcat to allow
> > > > > > > > > the METViewer to deploy.
> > > > > > > > >
> > > > > > > > > Based on this, what is the next step?
> > > > > > > > >
> > > > > > > > > Thanks.
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > >    From: Tatiana Burek via RT
> > > > > > > > > [Caution-Caution-Caution-Caution-
mailto:met_help at ucar.
> > > > > > > > > edu]
> > > > > > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > > > > > >      To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > > #91137] Installing METviewer
> > > > > > > > >
> > > > > > > > > - METviewer will work with any version of Tomcat
> > > > > > > > > starting from
> > > > > > > > > Tomcat6
> > > > > > > > > and
> > > > > > > > > ending with  Tomcat8.
> > > > > > > > > - You can install packages after R is installed.
> > > > > > > > >   - METviewer supports MariaDB. We use this setup on
> > > > > > > > > one of our servers
> > > > > > > > >   - By  modules I mean the load/batch portion of
> > > > > > > > > METviewer ( the command line interface ) and the web
> > > > > > > > > application.
> > > > > > > > >
> > > > > > > > > The batch/load module is basically a folder with
> > > > > > > > > scripts and executables. Web application comes as a
> > > > > > > > > .war file that can be put under Tomcat.
> > > > > > > > > Ant build script requires some setting variables and
> > > > > > > > > builds both modules OR you would give me settings
and
> > > > > > > > > I build modules for you.
> > > > > > > > >
> > > > > > > > > Tatiana
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > On Thu Jul 18 14:00:51 2019,
john.w.raby2.civ at mail.mil
> > > > > > > > > wrote:
> > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > >
> > > > > > > > > > Tatiana -
> > > > > > > > > >
> > > > > > > > > > My system admin has started the provisioning of my
> > > > > > > > > > workstation.
> > > > > > > > > >
> > > > > > > > > > In answer to your question about Java the
following
> > > > > > > > > > shows the
> > > > > > > > > > version:
> > > > > > > > > > java -version
> > > > > > > > > > java version "1.8.0_212"
> > > > > > > > > > Java(TM) SE Runtime Environment (build
> > > > > > > > > > 1.8.0_212-b10) Java
> > > > > > > > > > HotSpot(TM)
> > > > > > > > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > > > > > > > >
> > > > > > > > > > Regards my preference for the running mode, I
would
> > > > > > > > > > like to use the web UI. Is there a version
> > > > > > > > > > requirement for Tomcat?
> > > > > > > > > >
> > > > > > > > > > He has installed MariaDB (myql for RHEL7) and is
> > > > > > > > > > currently in the process of installing R. I assume
> > > > > > > > > > that once R is installed that I can install the
> > > > > > > > > > packages you mention below, correct?
> > > > > > > > > >
> > > > > > > > > > I'm not quite sure what METViewer modules are for
> > > > > > > > > > answering your question about whether I want to
> > > > > > > > > > build them or have you do it.
> > > > > > > > > > Could
> > > > > > > > > > you provide more explanation or point me to where
I
> > > > > > > > > > can read more?
> > > > > > > > > >
> > > > > > > > > > R/
> > > > > > > > > > John
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > >    From: Tatiana Burek via RT
> > > > > > > > > > [Caution-Caution-Caution-Caution-
mailto:met_help at uca
> > > > > > > > > > r.edu]
> > > > > > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > > > > > >      To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > > > #91137] Installing METviewer
> > > > > > > > > >
> > > > > > > > > > All active links contained in this email were
> > > > > > > > > > disabled.
> > > > > > > > > >    Please verify the identity of the sender, and
> > > > > > > > > > confirm  the  authenticity of all links contained
> > > > > > > > > > within the  message prior to copying and pasting
the
> > > > > > > > > > address to a Web browser.
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > ----
> > > > > > > > > >
> > > > > > > > > > Hi John,
> > > > > > > > > >        Are you planning to run METviewer using the
> > > > > > > > > > batch  mode  only  (from the command  line with
XML
> > > > > > > > > > configuration) or with the web user interface
option?
> > > > > > > > > > If you
> > > > > > > > > >        need UI you need to install Tomcat. With
> > > > > > > > > > Tomcat  only,  you can  access UI using  Caution-
> > > > > > > > > > Caution-Caution-Caution-
> > > > > > > > > > Caution-http://localhost:8080/metviewer.
> > > > > > > > > >     For  more advanced settings you need to use
> > > > > > > > > > Apache/Tomcat configurations.
> > > > > > > > > > You also need to install R packages from R
console:
> > > > > > > > > > install.packages('boot')
> > > > > > > > > > install.packages('plotrix')
> > > > > > > > > > install.packages('gsl')
> > > > > > > > > > install.packages('data.table')
> > > > > > > > > > install.packages('verification')
> > > > > > > > > >
> > > > > > > > > > I can build METviewer modules for you or you can
do
> > > > > > > > > > it by yourself.
> > > > > > > > > > In
> > > > > > > > > > this case you need to install Ant. Let me know
your
> > > > > > > > > > preference.
> > > > > > > > > > What is the version of Java you going to use?
> > > > > > > > > >
> > > > > > > > > > Tatiana
> > > > > > > > > >
> > > > > > > > > > Tatiana
> > > > > > > > > >
> > > > > > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > > > > > I am starting the preps to have METViewer
> > > > > > > > > > > installed on my local linux workstation. I
already
> > > > > > > > > > > have Java and need to have R and MySQL
installed.
> > > > > > > > > > > Anything else?
> > > > > > > > > > >
> > > > > > > > > > > R/
> > > > > > > > > > > John
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > >
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



CLASSIFICATION: UNCLASSIFIED

------------------------------------------------
Subject: Installing METviewer
From: Tatiana Burek
Time: Fri Aug 09 08:55:06 2019

John,
The host name of your server is http://carson2.arl.army.mil:8080 and I
built the web app with localhost:8080.
In orhter for the app to dispay plots you need to edit the file:
/opt/tomcat7/webapps/metviewer/WEB-INF/classes/mvservlet.properties.
Replace url.output value:
url.output=http://carson2.arl.army.mil:8080/metviewer_output/
and restart Tomcat.

You also need to modify the path to Java in other scripts:
mv_batch.sh
mv_prune.sh
mv_scorecard.sh

Tatiana


On Wed Aug 07 14:48:04 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> The files are not attached to the email below.
>
> R/
>  John
>
> -----Original Message-----
>  From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> Sent: Wednesday, August 7, 2019 2:35 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> All active links contained in this email were disabled.  Please
verify
> the identity of the sender, and confirm the authenticity of all
links
> contained within the message prior to copying and pasting the
address
> to a Web browser.
>
>
>
>
> ----
>
> John,
>  I just sent you files.
> I have a feeling that the HelpDeck system for some reason blocks
> attachments.
> Let me know if you reserve the files and if not I will send them to
> you directly.
>
> Tatiana
>
> On Wed Aug 07 14:16:02 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > I checked my email and I don't see an email from you on 01 AUG.
Not
> > sure what happened. Could you resend it?
> >
> > R/
> > John
> >
> > -----Original Message-----
> >  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > Sent: Wednesday, August 7, 2019 1:23 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > All active links contained in this email were disabled.  Please
> > verify
> > the identity of the sender, and confirm the authenticity of all
links
> > contained within the message prior to copying and pasting the
address
> > to a Web browser.
> >
> >
> >
> >
> > ----
> >
> > John,
> >  I sent you install files with the instructions on Aug.1. Have you
> > receive them?
> >
> > Tatiana
> > On Wed Aug 07 12:21:01 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > I like your idea. What is the impact of not having gsl?
> > >
> > > What is the next step to install METViewer?
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > >   From: Tatiana Burek via RT
> > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > Sent: Wednesday, August 7, 2019 11:20 AM
> > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > you can install METviewer without gsl package.
> > >
> > >
> > > Tatiana
> > > On Wed Aug 07 09:46:16 2019, john.w.raby2.civ at mail.mil wrote:
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > Thanks for taking a look at the error anyway. Do you have a
> > > > choice
> > > > which gsl version gets installed? The loading of the R package
> > > > apparently prescribes what version is installed. Is this your
> > > > understanding?
> > > >
> > > > If I had the option of independently installing a different
gsl
> > > > version myself and was lucky enough to get a version which
> > > > successfully compiles, would it be possible to have R use this
> > > > version for the loading of the gsl package?
> > > >
> > > > Can  I proceed with installing METViewer  despite not having
the
> > > > gsl package loaded?
> > > >
> > > > R/
> > > > John
> > > >
> > > > -----Original Message-----
> > > >   From: Tatiana Burek via RT
> > > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > > Sent: Wednesday, August 7, 2019 9:31 AM
> > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > All active links contained in this email were disabled.
Please
> > > > verify the identity of the sender, and confirm the
authenticity
> > > > of
> > > > all links contained within the message prior to copying and
> > > > pasting the address to a Web browser.
> > > >
> > > >
> > > >
> > > >
> > > > ----
> > > >
> > > > John,
> > > >
> > > > I am not an expert in gsl installs and I can't replicate this
> > > > problem on our servers.
> > > > Looks like some gsl users have similar errors:
> > > > Caution-Caution-Caution-
> > > > https://github.com/RobinHankin/gsl/issues/
> > > > 4 According to this thread the problem can be in GSL version.
> > > > Pleas take a look at the comments by user 'RobinHankin' about
the
> > > > multiple or old versons.
> > > >
> > > > Tatiana
> > > >
> > > > On Wed Aug 07 07:28:44 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > Tatiana -
> > > > >
> > > > > This morning I tried a couple of tests to see if I could
load
> > > > > the gsl R package. First, I opened a terminal and just ran
the
> > > > > install command in R as before but selected a different CRAN
> > > > > site for downloading the package. The result was the same as
> > > > > the
> > > > > error I reported in my email below.
> > > > >
> > > > > Then I opened a new terminal and set the env variables you
> > > > > described in an earlier email for bash. I then attempted to
> > > > > install the gsl R package, but this time the dialog was
> > > > > different.
> > > > > Apparently it got past the issue which prevented execution
> > > > > before, and now it can't compile the package. See the
following
> > > > > dialog:
> > > > >
> > > > > trying URL
> > > > > 'Caution-
> > > > > Caution-
> > > > > Caution-
> > > > > https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > > > 1
> > > > > -
> > > > > 6.tar.gz'
> > > > >   Content type 'application/octet-stream' length 189794
bytes
> > > > > (185
> > > > > KB) ==================================================
> > > > > downloaded 185 KB
> > > > >
> > > > > * installing *source* package 'gsl' ...
> > > > > ** package 'gsl' successfully unpacked and MD5 sums checked
> > > > > ** using staged installation
> > > > >     checking for gsl-config... /usr/bin/gsl-config checking
if
> > > > > GSL version
> > > > > > = 2.1... checking for gcc... gcc checking whether the C
> > > > > > compiler
> > > > > works... yes checking for C compiler default output file
> > > > > name...
> > > > > a.out
> > > > > checking for suffix of executables...
> > > > >    checking whether we are cross compiling... no checking
for
> > > > >  suffix  of object files... o checking whether we are using
the
> > > > > GNU C compiler...
> > > > >    yes checking whether gcc accepts -g... yes checking for
gcc
> > > > > option to accept ISO C89... none needed yes
> > > > > configure: creating ./config.status
> > > > > config.status: creating src/Makevars
> > > > > ** libs
> > > > >    gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> > > > >    -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2
-c
> > > > >  airy.c -o airy.o gcc -std=gnu99
> > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > -DNDEBUG
> > > > >     -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2
-c
> > > > >  bessel.c  -o bessel.o gcc -std=gnu99
> > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > -O2
> > > > >   -c clausen.c -o clausen.o gcc -std=gnu99
-I"/home/jraby/R/R-
> > > > > 3.6.1/include"
> > > > > -DNDEBUG
> > > > >     -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2
-c
> > > > >  coulomb.c -o coulomb.o gcc -std=gnu99 -I"/home/jraby/R/R-
> > > > > 3.6.1/include"
> > > > > -DNDEBUG
> > > > >      -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2
> > > > > -c
> > > > >  coupling.c -o coupling.o gcc -std=gnu99
> > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > -O2
> > > > >   -c dawson.c -o dawson.o gcc -std=gnu99 -I"/home/jraby/R/R-
> > > > > 3.6.1/include"
> > > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > -O2
> > > > >   -c debye.c -o debye.o gcc -std=gnu99
> > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > -O2
> > > > >   -c dilog.c -o dilog.o gcc -std=gnu99
> > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > -O2
> > > > > -c ellint.c -o ellint.o
> > > > > ellint.c: In function 'ellint_D_e':
> > > > > ellint.c:82:5: warning: passing argument 4 of
> > > > > 'gsl_sf_ellint_D_e'
> > > > > makes integer from pointer without a cast [enabled by
default]
> > > > >    status[i] = gsl_sf_ellint_D_e(phi[i], k[i],
sf_mode[*mode],
> > > > > &result) ;
> > > > >    ^
> > > > > In file included from ellint.c:1:0:
> > > > >  /usr/include/gsl/gsl_sf_ellint.h:84:5: note: expected
> > > > > 'gsl_mode_t'
> > > > > but
> > > > > argument is of type 'struct gsl_sf_result *'
> > > > >    int gsl_sf_ellint_D_e(double phi, double k, double n,
> > > > > gsl_mode_t mode, gsl_sf_result * result);
> > > > >    ^
> > > > >    ellint.c:82:5: error: too few arguments to function
> > > > > 'gsl_sf_ellint_D_e'
> > > > >    status[i] = gsl_sf_ellint_D_e(phi[i], k[i],
sf_mode[*mode],
> > > > > &result) ;
> > > > >    ^
> > > > > In file included from ellint.c:1:0:
> > > > >     /usr/include/gsl/gsl_sf_ellint.h:84:5: note: declared
here
> > > > >  int  gsl_sf_ellint_D_e(double phi, double k, double n,
> > > > > gsl_mode_t mode, gsl_sf_result * result);
> > > > >    ^
> > > > > make: *** [ellint.o] Error 1
> > > > > ERROR: compilation failed for package 'gsl'
> > > > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > > > >
> > > > > The downloaded source packages are in
> > > > >         '/home/jraby/tmp/RtmpO0i7Ze/downloaded_packages'
> > > > > Updating HTML index of packages in '.Library'
> > > > > Making 'packages.html' ... done
> > > > > Warning message:
> > > > > In install.packages("gsl") :
> > > > >   installation of package 'gsl' had non-zero exit status
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > >
> > > > > ________________________________________
> > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > Sent: Tuesday, August 06, 2019 4:39 PM
> > > > > To: met_help at ucar.edu
> > > > >     Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer (UNCLASSIFIED)
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > My sysadm installed gsl-devel using the command you
provided. I
> > > > > just tried to load the R package, but it has the same error:
> > > > >
> > > > > > install.packages('gsl')
> > > > > --- Please select a CRAN mirror for use in this session ---
I
> > > > > selected
> > > > > 63 (USA MI)
> > > > >
> > > > > trying URL
> > > > > 'Caution-
> > > > > Caution-
> > > > > Caution-
> > > > > https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > > > 1
> > > > > -
> > > > > 6.tar.gz'
> > > > >   Content type 'application/octet-stream' length 189794
bytes
> > > > > (185
> > > > > KB) ==================================================
> > > > > downloaded 185 KB
> > > > >
> > > > > * installing *source* package 'gsl' ...
> > > > > ** package 'gsl' successfully unpacked and MD5 sums checked
> > > > > ** using staged installation
> > > > >     ERROR: 'configure' exists but is not executable -- see
the
> > > > > 'R
> > > > > Installation and Administration Manual'
> > > > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > > > >
> > > > > The downloaded source packages are in
> > > > >         '/tmp/RtmpFotJTN/downloaded_packages'
> > > > > Updating HTML index of packages in '.Library'
> > > > > Making 'packages.html' ... done
> > > > > Warning message:
> > > > > In install.packages("gsl") :
> > > > >   installation of package 'gsl' had non-zero exit status
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > >
> > > > >
> > > > > -----Original Message-----
> > > > >  From: Tatiana Burek via RT
> > > > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > Sent: Tuesday, August 6, 2019 3:17 PM
> > > > >    To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing
> > > > > METviewer
> > > > >
> > > > > All active links contained in this email were disabled.
Please
> > > > > verify the identity of the sender, and confirm the
authenticity
> > > > > of all links contained within the message prior to copying
and
> > > > > pasting the address to a Web browser.
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > ----
> > > > >
> > > > > I checked R gsl dependencies and it does require gsl-devel
To
> > > > > install gsl-devel you (or your sys admin)  need to run yum
> > > > > install gsl-devel
> > > > >
> > > > > Tatiana
> > > > >
> > > > > On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > So, gsl itself is not required in order to have a
successful
> > > > > > install of the R package gsl, correct?
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > > -----Original Message-----
> > > > > >   From: Tatiana Burek via RT
> > > > > > [Caution-Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > Sent: Tuesday, August 6, 2019 2:50 PM
> > > > > >     To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > <john.w.raby2.civ at mail.mil>
> > > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > gsl and "R package gsl" are different libraries and are
> > > > > > needed
> > > > > > to be installed separately.
> > > > > > I'm not sure that  there is a dependency between of them
but
> > > > > > if there is than R gsl would depend on the standard gsl.
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > > Tatiana -
> > > > > > >
> > > > > > > Thanks for your guidance on resolving the issues. I will
> > > > > > > consult with my sysadm and get back to you soon.
> > > > > > >
> > > > > > > Regards the gsl package, I read about the eclv plot and
I
> > > > > > > don't have an interest at the present time. Was the
loading
> > > > > > > of the gsl package supposed to do an install of the gsl?
I
> > > > > > > have installed gsl as part of the provisioning required
> > > > > > > prior to installing MET
> > > > > > > V5.2 on the HPC. If I was able to do that on my
workstation
> > > > > > > and was successful, would that alleviate the problem and
> > > > > > > allow the package to be installed?
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > >    From: Tatiana Burek via RT
> > > > > > > [Caution-Caution-Caution-Caution-
mailto:met_help at ucar.edu]
> > > > > > > Sent: Tuesday, August 6, 2019 2:13 PM
> > > > > > >     To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > Installing METviewer
> > > > > > >
> > > > > > > John,
> > > > > > >
> > > > > > > By default, R uses the /tmp directory to install
packages.
> > > > > > > The
> > > > > > >  /tmp directory is often marked as “noexec”. This means
> > > > > > > that
> > > > > > > no file under /tmp can ever be executed.
> > > > > > >  To solve this problem you need  to set the TMPDIR
> > > > > > > environment
> > > > > > > variable:
> > > > > > > For csh shell:
> > > > > > > mkdir ~/tmp
> > > > > > > setenv TMPDIR ~/tmp
> > > > > > >
> > > > > > > for bash:
> > > > > > > mkdir ~/tmp
> > > > > > > export TMPDIR=~/tmp
> > > > > > >
> > > > > > > gsl package is only needed for Eclv plot. If you are not
> > > > > > > planning to create these plots you don't need to install
> > > > > > > this package.
> > > > > > >
> > > > > > > Tatiana
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil
> > > > > > > wrote:
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > Today I was able to resume the loading of the R
packages
> > > > > > > > you specified in an earlier email. There were issues
> > > > > > > > encountered when loading 'gsl"
> > > > > > > > and 'verification'. I'm not sure where to start
debugging
> > > > > > > > the issues.
> > > > > > > > I captured the screen dialog so you can see more
specific
> > > > > > > > info about them. See attached text file.
> > > > > > > >
> > > > > > > > The R packages which appear to have loaded
successfully
> > > > > > > > are:
> > > > > > > > 'boot', 'plotrix', and 'data.table'
> > > > > > > >
> > > > > > > > What do you recommend for troubleshooting these
issues?
> > > > > > > >
> > > > > > > > At this point, I believe that you have all the info
you
> > > > > > > > requested which was provided in earlier emails.
> > > > > > > >
> > > > > > > > Let me know if you need additional info to proceed.
> > > > > > > >
> > > > > > > > Thanks.
> > > > > > > >
> > > > > > > > R/
> > > > > > > >  John
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > ________________________________________
> > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > > > > > > To: met_help at ucar.edu
> > > > > > > >       Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > #91137] Installing METviewer (UNCLASSIFIED)
> > > > > > > >
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > I'm sorry about the delay in getting back to you with
an
> > > > > > > > update.
> > > > > > > >
> > > > > > > > My workstation is fully operational now. I have not
had a
> > > > > > > > chance to load the remaining R packages.
> > > > > > > >
> > > > > > > > In answer to the questions you asked me:
> > > > > > > >
> > > > > > > > - database host and port. By default it is
> > > > > > > > localhost:3306.
> > > > > > > > Will this apply to your server?
> > > > > > > >     YES
> > > > > > > >   - database user name and password. This is for the
user
> > > > > > > > that would insert and retrieve date to/from database
> > > > > > > >     ruser / whitesands
> > > > > > > > - the path to Tomcat's webapp directory
> > > > > > > >     /opt/tomcat7/webapp
> > > > > > > > - the path where the R executables will be installed.
> > > > > > > >     /home/jraby/R/R-3.6.1/bin/
> > > > > > > >   - path to Java. By default it is java. Will this
apply
> > > > > > > > to
> > > > > > > > your server?
> > > > > > > >     /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > > > > > > - path where the METViewer executables should be
located.
> > > > > > > >     /home/jraby/METViewer
> > > > > > > >
> > > > > > > > Let me know if you need other details.
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > > >
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > Sent: Thursday, July 25, 2019 8:35 AM
> > > > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > > > >       Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > #91137] Installing METviewer
> > > > > > > > (UNCLASSIFIED)
> > > > > > > >
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > FYI, the issue with my workstation has been resolved
and
> > > > > > > > I
> > > > > > > > should receive it back in my office today. I will load
> > > > > > > > the
> > > > > > > > remaining R packages which you listed in your earlier
> > > > > > > > email.
> > > > > > > > I'll have my system admin send you the info you
requested
> > > > > > > > last week soon.
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > Sent: Friday, July 19, 2019 3:23 PM
> > > > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > > > >       Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > #91137] Installing METviewer
> > > > > > > > (UNCLASSIFIED)
> > > > > > > >
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > My system admin was able to change the permissions on
the
> > > > > > > > library and all other directories in the install
> > > > > > > > directory
> > > > > > > > and I was able to load the first R package
successfully
> > > > > > > > at:
> > > > > > > > /home/jraby/R/R-3.6.1/library
> > > > > > > >
> > > > > > > > My system admin was working on obtaining the rest of
the
> > > > > > > > info you requested.
> > > > > > > > Unfortunately, the workstation would not complete a
> > > > > > > > reboot
> > > > > > > > and cannot be accessed now. He is looking into
resolving
> > > > > > > > that problem now. Not sure whether the problem is
> > > > > > > > connected with the installation of the new apps
> > > > > > > > associated
> > > > > > > > with getting the system provisioned for METViewer, but
it
> > > > > > > > is strangely coincident.
> > > > > > > >
> > > > > > > > I'll be back in touch on Monday to provide an update
on
> > > > > > > > the status.
> > > > > > > >
> > > > > > > > Have a great weekend!
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > >   From: Tatiana Burek via RT
> > > > > > > > [Caution-Caution-Caution-Caution-
> > > > > > > > mailto:met_help at ucar.edu]
> > > > > > > > Sent: Friday, July 19, 2019 12:57 PM
> > > > > > > >      To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > >       Subject: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > > > Installing METviewer
> > > > > > > >
> > > > > > > > METviewer can work with personal libraries. Let me
know
> > > > > > > > the path and I add it to build.
> > > > > > > > Is it /home/jraby/R/R-3.6.1/library?
> > > > > > > >
> > > > > > > > Tatiana
> > > > > > > >
> > > > > > > > On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil
> > > > > > > > wrote:
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > Thanks for the info and guidance.
> > > > > > > > >
> > > > > > > > > I tried loading the R packages with user
permissions,
> > > > > > > > > but it can't due to an apparent permissions issue.
See
> > > > > > > > > the following
> > > > > > > > > dialog:
> > > > > > > > > > install.packages('boot')
> > > > > > > > > Warning in install.packages("boot") :
> > > > > > > > >         'lib = "/home/jraby/R/R-3.6.1/library"' is
not
> > > > > > > > >  writable Would you like to use a personal library
> > > > > > > > > instead?
> > > > > > > > > (yes/No/cancel)
> > > > > > > > >
> > > > > > > > > If I set up a "personal" library as they suggest,
will
> > > > > > > > > METViewer have an issue?
> > > > > > > > >
> > > > > > > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > > > > > > >
> > > > > > > > > My system admin is working on getting answers to the
> > > > > > > > > remaining questions.
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > ________________________________________
> > > > > > > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > > > > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > > > > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > >       Subject: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > > #91137]
> > > > > > > > > Installing METviewer
> > > > > > > > >
> > > > > > > > > Hi John,
> > > > > > > > > Were you able to install the additional R packages?
> > > > > > > > >     I can build and provide you .war file as well as
> > > > > > > > > other executables.
> > > > > > > > > For that, I need some parameters  to build these
files:
> > > > > > > > >     - database host and port. By default it is
> > > > > > > > > localhost:3306.
> > > > > > > > > Will this apply to your server?
> > > > > > > > >       - database user name and password. This is for
> > > > > > > > > the
> > > > > > > > > user that would insert and retrieve date to/from
> > > > > > > > > database
> > > > > > > > >       - the path to Rscript executable. By default
it
> > > > > > > > > is
> > > > > > > > > just Rscript.Will this apply to your server?
> > > > > > > > > - the path to Tomcat's webapp directory
> > > > > > > > > - the path where the executables will be installed.
> > > > > > > > >       - path to Java. By default it is java. Will
this
> > > > > > > > > apply to your server?
> > > > > > > > >
> > > > > > > > > Tatiana
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > On Fri Jul 19 10:39:13 2019,
john.w.raby2.civ at mail.mil
> > > > > > > > > wrote:
> > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > >
> > > > > > > > > > Tatiana -
> > > > > > > > > >
> > > > > > > > > > At this time, the system admin has the following
> > > > > > > > > > installed on my
> > > > > > > > > > workstation:
> > > > > > > > > > MariaDB, Java, Tomcat, and R
> > > > > > > > > >
> > > > > > > > > > He says that a .war file is needed and that it
must
> > > > > > > > > > be
> > > > > > > > > > placed in a specific directory under Tomcat to
allow
> > > > > > > > > > the METViewer to deploy.
> > > > > > > > > >
> > > > > > > > > > Based on this, what is the next step?
> > > > > > > > > >
> > > > > > > > > > Thanks.
> > > > > > > > > >
> > > > > > > > > > R/
> > > > > > > > > > John
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > >     From: Tatiana Burek via RT
> > > > > > > > > > [Caution-Caution-Caution-Caution-
> > > > > > > > > > mailto:met_help at ucar.
> > > > > > > > > > edu]
> > > > > > > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > > > > > > >       To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > > >       Subject: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > > > #91137] Installing METviewer
> > > > > > > > > >
> > > > > > > > > > - METviewer will work with any version of Tomcat
> > > > > > > > > > starting from
> > > > > > > > > > Tomcat6
> > > > > > > > > > and
> > > > > > > > > > ending with  Tomcat8.
> > > > > > > > > > - You can install packages after R is installed.
> > > > > > > > > >   - METviewer supports MariaDB. We use this setup
on
> > > > > > > > > > one of our servers
> > > > > > > > > >   - By  modules I mean the load/batch portion of
> > > > > > > > > > METviewer ( the command line interface ) and the
web
> > > > > > > > > > application.
> > > > > > > > > >
> > > > > > > > > > The batch/load module is basically a folder with
> > > > > > > > > > scripts and executables. Web application comes as
a
> > > > > > > > > > .war file that can be put under Tomcat.
> > > > > > > > > > Ant build script requires some setting variables
and
> > > > > > > > > > builds both modules OR you would give me settings
and
> > > > > > > > > > I build modules for you.
> > > > > > > > > >
> > > > > > > > > > Tatiana
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > On Thu Jul 18 14:00:51 2019,
> > > > > > > > > > john.w.raby2.civ at mail.mil
> > > > > > > > > > wrote:
> > > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > > >
> > > > > > > > > > > Tatiana -
> > > > > > > > > > >
> > > > > > > > > > > My system admin has started the provisioning of
my
> > > > > > > > > > > workstation.
> > > > > > > > > > >
> > > > > > > > > > > In answer to your question about Java the
following
> > > > > > > > > > > shows the
> > > > > > > > > > > version:
> > > > > > > > > > > java -version
> > > > > > > > > > > java version "1.8.0_212"
> > > > > > > > > > > Java(TM) SE Runtime Environment (build
> > > > > > > > > > > 1.8.0_212-b10) Java
> > > > > > > > > > > HotSpot(TM)
> > > > > > > > > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > > > > > > > > >
> > > > > > > > > > > Regards my preference for the running mode, I
would
> > > > > > > > > > > like to use the web UI. Is there a version
> > > > > > > > > > > requirement for Tomcat?
> > > > > > > > > > >
> > > > > > > > > > > He has installed MariaDB (myql for RHEL7) and is
> > > > > > > > > > > currently in the process of installing R. I
assume
> > > > > > > > > > > that once R is installed that I can install the
> > > > > > > > > > > packages you mention below, correct?
> > > > > > > > > > >
> > > > > > > > > > > I'm not quite sure what METViewer modules are
for
> > > > > > > > > > > answering your question about whether I want to
> > > > > > > > > > > build them or have you do it.
> > > > > > > > > > > Could
> > > > > > > > > > > you provide more explanation or point me to
where I
> > > > > > > > > > > can read more?
> > > > > > > > > > >
> > > > > > > > > > > R/
> > > > > > > > > > > John
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > >     From: Tatiana Burek via RT
> > > > > > > > > > > [Caution-Caution-Caution-Caution-
> > > > > > > > > > > mailto:met_help at uca
> > > > > > > > > > > r.edu]
> > > > > > > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > > > > > > >       To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > > > >       Subject: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > > > > #91137] Installing METviewer
> > > > > > > > > > >
> > > > > > > > > > > All active links contained in this email were
> > > > > > > > > > > disabled.
> > > > > > > > > > >     Please verify the identity of the sender,
and
> > > > > > > > > > >  confirm  the  authenticity of all links
contained
> > > > > > > > > > > within the  message prior to copying and pasting
> > > > > > > > > > > the
> > > > > > > > > > > address to a Web browser.
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > ----
> > > > > > > > > > >
> > > > > > > > > > > Hi John,
> > > > > > > > > > >         Are you planning to run METviewer using
the
> > > > > > > > > > > batch  mode  only  (from the command  line with
XML
> > > > > > > > > > > configuration) or with the web user interface
> > > > > > > > > > > option?
> > > > > > > > > > > If you
> > > > > > > > > > >         need UI you need to install Tomcat. With
> > > > > > > > > > > Tomcat  only,  you can  access UI using
Caution-
> > > > > > > > > > >  Caution-Caution-Caution-
> > > > > > > > > > > Caution-http://localhost:8080/metviewer.
> > > > > > > > > > >      For  more advanced settings you need to use
> > > > > > > > > > > Apache/Tomcat configurations.
> > > > > > > > > > > You also need to install R packages from R
console:
> > > > > > > > > > > install.packages('boot')
> > > > > > > > > > > install.packages('plotrix')
> > > > > > > > > > > install.packages('gsl')
> > > > > > > > > > > install.packages('data.table')
> > > > > > > > > > > install.packages('verification')
> > > > > > > > > > >
> > > > > > > > > > > I can build METviewer modules for you or you can
do
> > > > > > > > > > > it by yourself.
> > > > > > > > > > > In
> > > > > > > > > > > this case you need to install Ant. Let me know
your
> > > > > > > > > > > preference.
> > > > > > > > > > > What is the version of Java you going to use?
> > > > > > > > > > >
> > > > > > > > > > > Tatiana
> > > > > > > > > > >
> > > > > > > > > > > Tatiana
> > > > > > > > > > >
> > > > > > > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > > > > > > I am starting the preps to have METViewer
> > > > > > > > > > > > installed on my local linux workstation. I
> > > > > > > > > > > > already
> > > > > > > > > > > > have Java and need to have R and MySQL
installed.
> > > > > > > > > > > > Anything else?
> > > > > > > > > > > >
> > > > > > > > > > > > R/
> > > > > > > > > > > > John
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > >
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



------------------------------------------------
Subject: Installing METviewer
From: Raby, John W USA CIV
Time: Fri Aug 09 11:18:27 2019

CLASSIFICATION: UNCLASSIFIED

Tatiana -

Thanks for your response to my question about the java path. Also
appreciate your suggestions for enabling the app to display plots.

Do you have an example of the XML file which is read into the database
which points METViewer to the .stat files you want it to work with?

I've been reading the documentation at
http://www.dtcenter.org/met/metviewer/doc/load.html

The XML file I believe is called the "load_spec_file" or "XML load
specification doc" correct? For the web UI, my understanding is that
you click on the button "Load XML" to go through the process of
loading the database.

R/
John



-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Friday, August 9, 2019 8:55 AM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

All active links contained in this email were disabled.  Please verify
the identity of the sender, and confirm the authenticity of all links
contained within the message prior to copying and pasting the address
to a Web browser.




----

John,
The host name of your server is Caution-
http://carson2.arl.army.mil:8080 and I built the web app with
localhost:8080.
In orhter for the app to dispay plots you need to edit the file:
/opt/tomcat7/webapps/metviewer/WEB-INF/classes/mvservlet.properties.
Replace url.output value:
url.output=Caution-http://carson2.arl.army.mil:8080/metviewer_output/
and restart Tomcat.

You also need to modify the path to Java in other scripts:
mv_batch.sh
mv_prune.sh
mv_scorecard.sh

Tatiana


On Wed Aug 07 14:48:04 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> The files are not attached to the email below.
>
> R/
>  John
>
> -----Original Message-----
>  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> Sent: Wednesday, August 7, 2019 2:35 PM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> All active links contained in this email were disabled.  Please
verify
> the identity of the sender, and confirm the authenticity of all
links
> contained within the message prior to copying and pasting the
address
> to a Web browser.
>
>
>
>
> ----
>
> John,
>  I just sent you files.
> I have a feeling that the HelpDeck system for some reason blocks
> attachments.
> Let me know if you reserve the files and if not I will send them to
> you directly.
>
> Tatiana
>
> On Wed Aug 07 14:16:02 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > I checked my email and I don't see an email from you on 01 AUG.
Not
> > sure what happened. Could you resend it?
> >
> > R/
> > John
> >
> > -----Original Message-----
> >  From: Tatiana Burek via RT
> > [Caution-Caution-mailto:met_help at ucar.edu]
> > Sent: Wednesday, August 7, 2019 1:23 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > All active links contained in this email were disabled.  Please
> > verify the identity of the sender, and confirm the authenticity of
> > all links contained within the message prior to copying and
pasting
> > the address to a Web browser.
> >
> >
> >
> >
> > ----
> >
> > John,
> >  I sent you install files with the instructions on Aug.1. Have you
> > receive them?
> >
> > Tatiana
> > On Wed Aug 07 12:21:01 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > I like your idea. What is the impact of not having gsl?
> > >
> > > What is the next step to install METViewer?
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > >   From: Tatiana Burek via RT
> > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > Sent: Wednesday, August 7, 2019 11:20 AM
> > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > you can install METviewer without gsl package.
> > >
> > >
> > > Tatiana
> > > On Wed Aug 07 09:46:16 2019, john.w.raby2.civ at mail.mil wrote:
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > Thanks for taking a look at the error anyway. Do you have a
> > > > choice which gsl version gets installed? The loading of the R
> > > > package apparently prescribes what version is installed. Is
this
> > > > your understanding?
> > > >
> > > > If I had the option of independently installing a different
gsl
> > > > version myself and was lucky enough to get a version which
> > > > successfully compiles, would it be possible to have R use this
> > > > version for the loading of the gsl package?
> > > >
> > > > Can  I proceed with installing METViewer  despite not having
the
> > > > gsl package loaded?
> > > >
> > > > R/
> > > > John
> > > >
> > > > -----Original Message-----
> > > >   From: Tatiana Burek via RT
> > > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > Sent: Wednesday, August 7, 2019 9:31 AM
> > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > All active links contained in this email were disabled.
Please
> > > > verify the identity of the sender, and confirm the
authenticity
> > > > of all links contained within the message prior to copying and
> > > > pasting the address to a Web browser.
> > > >
> > > >
> > > >
> > > >
> > > > ----
> > > >
> > > > John,
> > > >
> > > > I am not an expert in gsl installs and I can't replicate this
> > > > problem on our servers.
> > > > Looks like some gsl users have similar errors:
> > > > Caution-Caution-Caution-
> > > > Caution-https://github.com/RobinHankin/gsl/issues/
> > > > 4 According to this thread the problem can be in GSL version.
> > > > Pleas take a look at the comments by user 'RobinHankin' about
> > > > the multiple or old versons.
> > > >
> > > > Tatiana
> > > >
> > > > On Wed Aug 07 07:28:44 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > Tatiana -
> > > > >
> > > > > This morning I tried a couple of tests to see if I could
load
> > > > > the gsl R package. First, I opened a terminal and just ran
the
> > > > > install command in R as before but selected a different CRAN
> > > > > site for downloading the package. The result was the same as
> > > > > the error I reported in my email below.
> > > > >
> > > > > Then I opened a new terminal and set the env variables you
> > > > > described in an earlier email for bash. I then attempted to
> > > > > install the gsl R package, but this time the dialog was
> > > > > different.
> > > > > Apparently it got past the issue which prevented execution
> > > > > before, and now it can't compile the package. See the
> > > > > following
> > > > > dialog:
> > > > >
> > > > > trying URL
> > > > > 'Caution-
> > > > > Caution-
> > > > > Caution-
> > > > > Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > > > 1
> > > > > -
> > > > > 6.tar.gz'
> > > > >   Content type 'application/octet-stream' length 189794
bytes
> > > > > (185
> > > > > KB) ==================================================
> > > > > downloaded 185 KB
> > > > >
> > > > > * installing *source* package 'gsl' ...
> > > > > ** package 'gsl' successfully unpacked and MD5 sums checked
> > > > > ** using staged installation
> > > > >     checking for gsl-config... /usr/bin/gsl-config checking
if
> > > > > GSL version
> > > > > > = 2.1... checking for gcc... gcc checking whether the C
> > > > > > compiler
> > > > > works... yes checking for C compiler default output file
> > > > > name...
> > > > > a.out
> > > > > checking for suffix of executables...
> > > > >    checking whether we are cross compiling... no checking
for
> > > > > suffix  of object files... o checking whether we are using
the
> > > > > GNU C compiler...
> > > > >    yes checking whether gcc accepts -g... yes checking for
gcc
> > > > > option to accept ISO C89... none needed yes
> > > > > configure: creating ./config.status
> > > > > config.status: creating src/Makevars
> > > > > ** libs
> > > > >    gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include" -DNDEBUG
> > > > >    -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2
-c
> > > > > airy.c -o airy.o gcc -std=gnu99
> > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > -DNDEBUG
> > > > >     -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2
> > > > > -c  bessel.c  -o bessel.o gcc -std=gnu99
> > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > -O2
> > > > >   -c clausen.c -o clausen.o gcc -std=gnu99
-I"/home/jraby/R/R-
> > > > > 3.6.1/include"
> > > > > -DNDEBUG
> > > > >     -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2
> > > > > -c  coulomb.c -o coulomb.o gcc -std=gnu99
-I"/home/jraby/R/R-
> > > > > 3.6.1/include"
> > > > > -DNDEBUG
> > > > >      -I/usr/include -I.  -I/usr/local/include  -fpic  -g -O2
> > > > > -c  coupling.c -o coupling.o gcc -std=gnu99
> > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > -O2
> > > > >   -c dawson.c -o dawson.o gcc -std=gnu99 -I"/home/jraby/R/R-
> > > > > 3.6.1/include"
> > > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > -O2
> > > > >   -c debye.c -o debye.o gcc -std=gnu99
> > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > -O2
> > > > >   -c dilog.c -o dilog.o gcc -std=gnu99
> > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > >   -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > -O2
> > > > > -c ellint.c -o ellint.o
> > > > > ellint.c: In function 'ellint_D_e':
> > > > > ellint.c:82:5: warning: passing argument 4 of
> > > > > 'gsl_sf_ellint_D_e'
> > > > > makes integer from pointer without a cast [enabled by
default]
> > > > >    status[i] = gsl_sf_ellint_D_e(phi[i], k[i],
sf_mode[*mode],
> > > > > &result) ;
> > > > >    ^
> > > > > In file included from ellint.c:1:0:
> > > > >  /usr/include/gsl/gsl_sf_ellint.h:84:5: note: expected
> > > > > 'gsl_mode_t'
> > > > > but
> > > > > argument is of type 'struct gsl_sf_result *'
> > > > >    int gsl_sf_ellint_D_e(double phi, double k, double n,
> > > > > gsl_mode_t mode, gsl_sf_result * result);
> > > > >    ^
> > > > >    ellint.c:82:5: error: too few arguments to function
> > > > > 'gsl_sf_ellint_D_e'
> > > > >    status[i] = gsl_sf_ellint_D_e(phi[i], k[i],
sf_mode[*mode],
> > > > > &result) ;
> > > > >    ^
> > > > > In file included from ellint.c:1:0:
> > > > >     /usr/include/gsl/gsl_sf_ellint.h:84:5: note: declared
here
> > > > > int  gsl_sf_ellint_D_e(double phi, double k, double n,
> > > > > gsl_mode_t mode, gsl_sf_result * result);
> > > > >    ^
> > > > > make: *** [ellint.o] Error 1
> > > > > ERROR: compilation failed for package 'gsl'
> > > > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > > > >
> > > > > The downloaded source packages are in
> > > > >         '/home/jraby/tmp/RtmpO0i7Ze/downloaded_packages'
> > > > > Updating HTML index of packages in '.Library'
> > > > > Making 'packages.html' ... done Warning message:
> > > > > In install.packages("gsl") :
> > > > >   installation of package 'gsl' had non-zero exit status
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > >
> > > > > ________________________________________
> > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > Sent: Tuesday, August 06, 2019 4:39 PM
> > > > > To: met_help at ucar.edu
> > > > >     Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer (UNCLASSIFIED)
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > My sysadm installed gsl-devel using the command you
provided.
> > > > > I just tried to load the R package, but it has the same
error:
> > > > >
> > > > > > install.packages('gsl')
> > > > > --- Please select a CRAN mirror for use in this session ---
I
> > > > > selected
> > > > > 63 (USA MI)
> > > > >
> > > > > trying URL
> > > > > 'Caution-
> > > > > Caution-
> > > > > Caution-
> > > > > Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > > > 1
> > > > > -
> > > > > 6.tar.gz'
> > > > >   Content type 'application/octet-stream' length 189794
bytes
> > > > > (185
> > > > > KB) ==================================================
> > > > > downloaded 185 KB
> > > > >
> > > > > * installing *source* package 'gsl' ...
> > > > > ** package 'gsl' successfully unpacked and MD5 sums checked
> > > > > ** using staged installation
> > > > >     ERROR: 'configure' exists but is not executable -- see
the
> > > > > 'R Installation and Administration Manual'
> > > > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > > > >
> > > > > The downloaded source packages are in
> > > > >         '/tmp/RtmpFotJTN/downloaded_packages'
> > > > > Updating HTML index of packages in '.Library'
> > > > > Making 'packages.html' ... done Warning message:
> > > > > In install.packages("gsl") :
> > > > >   installation of package 'gsl' had non-zero exit status
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > >
> > > > >
> > > > > -----Original Message-----
> > > > >  From: Tatiana Burek via RT
> > > > > [Caution-Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > Sent: Tuesday, August 6, 2019 3:17 PM
> > > > >    To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer
> > > > >
> > > > > All active links contained in this email were disabled.
> > > > > Please verify the identity of the sender, and confirm the
> > > > > authenticity of all links contained within the message prior
> > > > > to copying and pasting the address to a Web browser.
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > ----
> > > > >
> > > > > I checked R gsl dependencies and it does require gsl-devel
To
> > > > > install gsl-devel you (or your sys admin)  need to run yum
> > > > > install gsl-devel
> > > > >
> > > > > Tatiana
> > > > >
> > > > > On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > So, gsl itself is not required in order to have a
successful
> > > > > > install of the R package gsl, correct?
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > > -----Original Message-----
> > > > > >   From: Tatiana Burek via RT
> > > > > > [Caution-Caution-Caution-Caution-Caution-
mailto:met_help at uca
> > > > > > r.edu]
> > > > > > Sent: Tuesday, August 6, 2019 2:50 PM
> > > > > >     To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > <john.w.raby2.civ at mail.mil>
> > > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > gsl and "R package gsl" are different libraries and are
> > > > > > needed to be installed separately.
> > > > > > I'm not sure that  there is a dependency between of them
but
> > > > > > if there is than R gsl would depend on the standard gsl.
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > > Tatiana -
> > > > > > >
> > > > > > > Thanks for your guidance on resolving the issues. I will
> > > > > > > consult with my sysadm and get back to you soon.
> > > > > > >
> > > > > > > Regards the gsl package, I read about the eclv plot and
I
> > > > > > > don't have an interest at the present time. Was the
> > > > > > > loading of the gsl package supposed to do an install of
> > > > > > > the gsl? I have installed gsl as part of the
provisioning
> > > > > > > required prior to installing MET
> > > > > > > V5.2 on the HPC. If I was able to do that on my
> > > > > > > workstation and was successful, would that alleviate the
> > > > > > > problem and allow the package to be installed?
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > >    From: Tatiana Burek via RT
> > > > > > > [Caution-Caution-Caution-Caution-Caution-
mailto:met_help at u
> > > > > > > car.edu]
> > > > > > > Sent: Tuesday, August 6, 2019 2:13 PM
> > > > > > >     To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > Installing METviewer
> > > > > > >
> > > > > > > John,
> > > > > > >
> > > > > > > By default, R uses the /tmp directory to install
packages.
> > > > > > > The
> > > > > > >  /tmp directory is often marked as “noexec”. This means
> > > > > > > that no file under /tmp can ever be executed.
> > > > > > >  To solve this problem you need  to set the TMPDIR
> > > > > > > environment
> > > > > > > variable:
> > > > > > > For csh shell:
> > > > > > > mkdir ~/tmp
> > > > > > > setenv TMPDIR ~/tmp
> > > > > > >
> > > > > > > for bash:
> > > > > > > mkdir ~/tmp
> > > > > > > export TMPDIR=~/tmp
> > > > > > >
> > > > > > > gsl package is only needed for Eclv plot. If you are not
> > > > > > > planning to create these plots you don't need to install
> > > > > > > this package.
> > > > > > >
> > > > > > > Tatiana
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil
> > > > > > > wrote:
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > Today I was able to resume the loading of the R
packages
> > > > > > > > you specified in an earlier email. There were issues
> > > > > > > > encountered when loading 'gsl"
> > > > > > > > and 'verification'. I'm not sure where to start
> > > > > > > > debugging the issues.
> > > > > > > > I captured the screen dialog so you can see more
> > > > > > > > specific info about them. See attached text file.
> > > > > > > >
> > > > > > > > The R packages which appear to have loaded
successfully
> > > > > > > > are:
> > > > > > > > 'boot', 'plotrix', and 'data.table'
> > > > > > > >
> > > > > > > > What do you recommend for troubleshooting these
issues?
> > > > > > > >
> > > > > > > > At this point, I believe that you have all the info
you
> > > > > > > > requested which was provided in earlier emails.
> > > > > > > >
> > > > > > > > Let me know if you need additional info to proceed.
> > > > > > > >
> > > > > > > > Thanks.
> > > > > > > >
> > > > > > > > R/
> > > > > > > >  John
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > ________________________________________
> > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > > > > > > To: met_help at ucar.edu
> > > > > > > >       Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > #91137] Installing METviewer (UNCLASSIFIED)
> > > > > > > >
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > I'm sorry about the delay in getting back to you with
an
> > > > > > > > update.
> > > > > > > >
> > > > > > > > My workstation is fully operational now. I have not
had
> > > > > > > > a chance to load the remaining R packages.
> > > > > > > >
> > > > > > > > In answer to the questions you asked me:
> > > > > > > >
> > > > > > > > - database host and port. By default it is
> > > > > > > > localhost:3306.
> > > > > > > > Will this apply to your server?
> > > > > > > >     YES
> > > > > > > >   - database user name and password. This is for the
> > > > > > > > user that would insert and retrieve date to/from
database
> > > > > > > >     ruser / whitesands
> > > > > > > > - the path to Tomcat's webapp directory
> > > > > > > >     /opt/tomcat7/webapp
> > > > > > > > - the path where the R executables will be installed.
> > > > > > > >     /home/jraby/R/R-3.6.1/bin/
> > > > > > > >   - path to Java. By default it is java. Will this
apply
> > > > > > > > to your server?
> > > > > > > >     /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > > > > > > - path where the METViewer executables should be
located.
> > > > > > > >     /home/jraby/METViewer
> > > > > > > >
> > > > > > > > Let me know if you need other details.
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > > >
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > Sent: Thursday, July 25, 2019 8:35 AM
> > > > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > > > >       Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > #91137] Installing METviewer
> > > > > > > > (UNCLASSIFIED)
> > > > > > > >
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > FYI, the issue with my workstation has been resolved
and
> > > > > > > > I should receive it back in my office today. I will
load
> > > > > > > > the remaining R packages which you listed in your
> > > > > > > > earlier email.
> > > > > > > > I'll have my system admin send you the info you
> > > > > > > > requested last week soon.
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > Sent: Friday, July 19, 2019 3:23 PM
> > > > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > > > >       Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > #91137] Installing METviewer
> > > > > > > > (UNCLASSIFIED)
> > > > > > > >
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > My system admin was able to change the permissions on
> > > > > > > > the library and all other directories in the install
> > > > > > > > directory and I was able to load the first R package
> > > > > > > > successfully
> > > > > > > > at:
> > > > > > > > /home/jraby/R/R-3.6.1/library
> > > > > > > >
> > > > > > > > My system admin was working on obtaining the rest of
the
> > > > > > > > info you requested.
> > > > > > > > Unfortunately, the workstation would not complete a
> > > > > > > > reboot and cannot be accessed now. He is looking into
> > > > > > > > resolving that problem now. Not sure whether the
problem
> > > > > > > > is connected with the installation of the new apps
> > > > > > > > associated with getting the system provisioned for
> > > > > > > > METViewer, but it is strangely coincident.
> > > > > > > >
> > > > > > > > I'll be back in touch on Monday to provide an update
on
> > > > > > > > the status.
> > > > > > > >
> > > > > > > > Have a great weekend!
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > >   From: Tatiana Burek via RT
> > > > > > > > [Caution-Caution-Caution-Caution-
> > > > > > > > Caution-mailto:met_help at ucar.edu]
> > > > > > > > Sent: Friday, July 19, 2019 12:57 PM
> > > > > > > >      To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > >       Subject: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > > > Installing METviewer
> > > > > > > >
> > > > > > > > METviewer can work with personal libraries. Let me
know
> > > > > > > > the path and I add it to build.
> > > > > > > > Is it /home/jraby/R/R-3.6.1/library?
> > > > > > > >
> > > > > > > > Tatiana
> > > > > > > >
> > > > > > > > On Fri Jul 19 12:39:28 2019, john.w.raby2.civ at mail.mil
> > > > > > > > wrote:
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > Thanks for the info and guidance.
> > > > > > > > >
> > > > > > > > > I tried loading the R packages with user
permissions,
> > > > > > > > > but it can't due to an apparent permissions issue.
See
> > > > > > > > > the following
> > > > > > > > > dialog:
> > > > > > > > > > install.packages('boot')
> > > > > > > > > Warning in install.packages("boot") :
> > > > > > > > >         'lib = "/home/jraby/R/R-3.6.1/library"' is
not
> > > > > > > > > writable Would you like to use a personal library
> > > > > > > > > instead?
> > > > > > > > > (yes/No/cancel)
> > > > > > > > >
> > > > > > > > > If I set up a "personal" library as they suggest,
will
> > > > > > > > > METViewer have an issue?
> > > > > > > > >
> > > > > > > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > > > > > > >
> > > > > > > > > My system admin is working on getting answers to the
> > > > > > > > > remaining questions.
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > ________________________________________
> > > > > > > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > > > > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > > > > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > >       Subject: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > > #91137] Installing METviewer
> > > > > > > > >
> > > > > > > > > Hi John,
> > > > > > > > > Were you able to install the additional R packages?
> > > > > > > > >     I can build and provide you .war file as well as
> > > > > > > > > other executables.
> > > > > > > > > For that, I need some parameters  to build these
files:
> > > > > > > > >     - database host and port. By default it is
> > > > > > > > > localhost:3306.
> > > > > > > > > Will this apply to your server?
> > > > > > > > >       - database user name and password. This is for
> > > > > > > > > the user that would insert and retrieve date to/from
> > > > > > > > > database
> > > > > > > > >       - the path to Rscript executable. By default
it
> > > > > > > > > is just Rscript.Will this apply to your server?
> > > > > > > > > - the path to Tomcat's webapp directory
> > > > > > > > > - the path where the executables will be installed.
> > > > > > > > >       - path to Java. By default it is java. Will
this
> > > > > > > > > apply to your server?
> > > > > > > > >
> > > > > > > > > Tatiana
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > On Fri Jul 19 10:39:13 2019,
john.w.raby2.civ at mail.mil
> > > > > > > > > wrote:
> > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > >
> > > > > > > > > > Tatiana -
> > > > > > > > > >
> > > > > > > > > > At this time, the system admin has the following
> > > > > > > > > > installed on my
> > > > > > > > > > workstation:
> > > > > > > > > > MariaDB, Java, Tomcat, and R
> > > > > > > > > >
> > > > > > > > > > He says that a .war file is needed and that it
must
> > > > > > > > > > be placed in a specific directory under Tomcat to
> > > > > > > > > > allow the METViewer to deploy.
> > > > > > > > > >
> > > > > > > > > > Based on this, what is the next step?
> > > > > > > > > >
> > > > > > > > > > Thanks.
> > > > > > > > > >
> > > > > > > > > > R/
> > > > > > > > > > John
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > >     From: Tatiana Burek via RT
> > > > > > > > > > [Caution-Caution-Caution-Caution-
> > > > > > > > > > Caution-mailto:met_help at ucar.
> > > > > > > > > > edu]
> > > > > > > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > > > > > > >       To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > > >       Subject: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > > > #91137] Installing METviewer
> > > > > > > > > >
> > > > > > > > > > - METviewer will work with any version of Tomcat
> > > > > > > > > > starting from
> > > > > > > > > > Tomcat6
> > > > > > > > > > and
> > > > > > > > > > ending with  Tomcat8.
> > > > > > > > > > - You can install packages after R is installed.
> > > > > > > > > >   - METviewer supports MariaDB. We use this setup
on
> > > > > > > > > > one of our servers
> > > > > > > > > >   - By  modules I mean the load/batch portion of
> > > > > > > > > > METviewer ( the command line interface ) and the
web
> > > > > > > > > > application.
> > > > > > > > > >
> > > > > > > > > > The batch/load module is basically a folder with
> > > > > > > > > > scripts and executables. Web application comes as
a
> > > > > > > > > > .war file that can be put under Tomcat.
> > > > > > > > > > Ant build script requires some setting variables
and
> > > > > > > > > > builds both modules OR you would give me settings
> > > > > > > > > > and I build modules for you.
> > > > > > > > > >
> > > > > > > > > > Tatiana
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > On Thu Jul 18 14:00:51 2019,
> > > > > > > > > > john.w.raby2.civ at mail.mil
> > > > > > > > > > wrote:
> > > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > > >
> > > > > > > > > > > Tatiana -
> > > > > > > > > > >
> > > > > > > > > > > My system admin has started the provisioning of
my
> > > > > > > > > > > workstation.
> > > > > > > > > > >
> > > > > > > > > > > In answer to your question about Java the
> > > > > > > > > > > following shows the
> > > > > > > > > > > version:
> > > > > > > > > > > java -version
> > > > > > > > > > > java version "1.8.0_212"
> > > > > > > > > > > Java(TM) SE Runtime Environment (build
> > > > > > > > > > > 1.8.0_212-b10) Java
> > > > > > > > > > > HotSpot(TM)
> > > > > > > > > > > 64-Bit Server VM (build 25.212-b10, mixed mode)
> > > > > > > > > > >
> > > > > > > > > > > Regards my preference for the running mode, I
> > > > > > > > > > > would like to use the web UI. Is there a version
> > > > > > > > > > > requirement for Tomcat?
> > > > > > > > > > >
> > > > > > > > > > > He has installed MariaDB (myql for RHEL7) and is
> > > > > > > > > > > currently in the process of installing R. I
assume
> > > > > > > > > > > that once R is installed that I can install the
> > > > > > > > > > > packages you mention below, correct?
> > > > > > > > > > >
> > > > > > > > > > > I'm not quite sure what METViewer modules are
for
> > > > > > > > > > > answering your question about whether I want to
> > > > > > > > > > > build them or have you do it.
> > > > > > > > > > > Could
> > > > > > > > > > > you provide more explanation or point me to
where
> > > > > > > > > > > I can read more?
> > > > > > > > > > >
> > > > > > > > > > > R/
> > > > > > > > > > > John
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > >     From: Tatiana Burek via RT
> > > > > > > > > > > [Caution-Caution-Caution-Caution-
> > > > > > > > > > > Caution-mailto:met_help at uca r.edu]
> > > > > > > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > > > > > > >       To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > > > >       Subject: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > > > > #91137] Installing METviewer
> > > > > > > > > > >
> > > > > > > > > > > All active links contained in this email were
> > > > > > > > > > > disabled.
> > > > > > > > > > >     Please verify the identity of the sender,
and
> > > > > > > > > > > confirm  the  authenticity of all links
contained
> > > > > > > > > > > within the  message prior to copying and pasting
> > > > > > > > > > > the address to a Web browser.
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > ----
> > > > > > > > > > >
> > > > > > > > > > > Hi John,
> > > > > > > > > > >         Are you planning to run METviewer using
> > > > > > > > > > > the batch  mode  only  (from the command  line
> > > > > > > > > > > with XML
> > > > > > > > > > > configuration) or with the web user interface
> > > > > > > > > > > option?
> > > > > > > > > > > If you
> > > > > > > > > > >         need UI you need to install Tomcat. With
> > > > > > > > > > > Tomcat  only,  you can  access UI using
Caution-
> > > > > > > > > > >  Caution-Caution-Caution-
> > > > > > > > > > > Caution-Caution-http://localhost:8080/metviewer.
> > > > > > > > > > >      For  more advanced settings you need to use
> > > > > > > > > > > Apache/Tomcat configurations.
> > > > > > > > > > > You also need to install R packages from R
console:
> > > > > > > > > > > install.packages('boot')
> > > > > > > > > > > install.packages('plotrix')
> > > > > > > > > > > install.packages('gsl')
> > > > > > > > > > > install.packages('data.table')
> > > > > > > > > > > install.packages('verification')
> > > > > > > > > > >
> > > > > > > > > > > I can build METviewer modules for you or you can
> > > > > > > > > > > do it by yourself.
> > > > > > > > > > > In
> > > > > > > > > > > this case you need to install Ant. Let me know
> > > > > > > > > > > your preference.
> > > > > > > > > > > What is the version of Java you going to use?
> > > > > > > > > > >
> > > > > > > > > > > Tatiana
> > > > > > > > > > >
> > > > > > > > > > > Tatiana
> > > > > > > > > > >
> > > > > > > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > > > > > > I am starting the preps to have METViewer
> > > > > > > > > > > > installed on my local linux workstation. I
> > > > > > > > > > > > already have Java and need to have R and MySQL
> > > > > > > > > > > > installed.
> > > > > > > > > > > > Anything else?
> > > > > > > > > > > >
> > > > > > > > > > > > R/
> > > > > > > > > > > > John
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > >
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



CLASSIFICATION: UNCLASSIFIED

------------------------------------------------
Subject: Installing METviewer
From: Tatiana Burek
Time: Tue Aug 13 10:35:29 2019

John,
METviewer web UI doesn't load date. It uses XML files that describe
configurations for plotting.

To load data, first you need to create a database an add schema to it.
The database name has to start with 'mv_'. For example, mv_test. The
schema is in /home/jraby/METViewer/sql/mv_mysql.sql:
 - mysql -u<your_user_name> -p<your_pwd> -e 'create database mv_test'
 - mysql -u<your_user_name> -p<your_pwd> mv_test <
/home/jraby/METViewer/sql/mv_mysql.sql

Now you need to create a XML file based on the example from load.html
page that points to your data and run loading script
/home/jraby/METViewer/bin/mv_load.sh with XML file as a parameter:
/home/jraby/METViewer/bin/mv_load.sh mv_spec.xml

Tatiana

On Fri Aug 09 11:18:27 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> Thanks for your response to my question about the java path. Also
> appreciate your suggestions for enabling the app to display plots.
>
> Do you have an example of the XML file which is read into the
database
> which points METViewer to the .stat files you want it to work with?
>
> I've been reading the documentation at
> http://www.dtcenter.org/met/metviewer/doc/load.html
>
> The XML file I believe is called the "load_spec_file" or "XML load
> specification doc" correct? For the web UI, my understanding is that
> you click on the button "Load XML" to go through the process of
> loading the database.
>
> R/
> John
>
>
>
> -----Original Message-----
>  From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
> Sent: Friday, August 9, 2019 8:55 AM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> All active links contained in this email were disabled.  Please
verify
> the identity of the sender, and confirm the authenticity of all
links
> contained within the message prior to copying and pasting the
address
> to a Web browser.
>
>
>
>
> ----
>
> John,
> The host name of your server is Caution-
> http://carson2.arl.army.mil:8080 and I built the web app with
> localhost:8080.
> In orhter for the app to dispay plots you need to edit the file:
>  /opt/tomcat7/webapps/metviewer/WEB-
INF/classes/mvservlet.properties.
> Replace url.output value:
> url.output=Caution-
http://carson2.arl.army.mil:8080/metviewer_output/
> and restart Tomcat.
>
> You also need to modify the path to Java in other scripts:
> mv_batch.sh
> mv_prune.sh
> mv_scorecard.sh
>
> Tatiana
>
>
> On Wed Aug 07 14:48:04 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > The files are not attached to the email below.
> >
> > R/
> >  John
> >
> > -----Original Message-----
> >  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> > Sent: Wednesday, August 7, 2019 2:35 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > All active links contained in this email were disabled.  Please
> > verify
> > the identity of the sender, and confirm the authenticity of all
links
> > contained within the message prior to copying and pasting the
address
> > to a Web browser.
> >
> >
> >
> >
> > ----
> >
> > John,
> >  I just sent you files.
> >  I have a feeling that the HelpDeck system for some reason blocks
> > attachments.
> >  Let me know if you reserve the files and if not I will send them
to
> > you directly.
> >
> > Tatiana
> >
> > On Wed Aug 07 14:16:02 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > I checked my email and I don't see an email from you on 01 AUG.
Not
> > > sure what happened. Could you resend it?
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > >   From: Tatiana Burek via RT
> > > [Caution-Caution-mailto:met_help at ucar.edu]
> > > Sent: Wednesday, August 7, 2019 1:23 PM
> > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > All active links contained in this email were disabled.  Please
> > > verify the identity of the sender, and confirm the authenticity
of
> > > all links contained within the message prior to copying and
pasting
> > > the address to a Web browser.
> > >
> > >
> > >
> > >
> > > ----
> > >
> > > John,
> > >   I sent you install files with the instructions on Aug.1. Have
you
> > > receive them?
> > >
> > > Tatiana
> > > On Wed Aug 07 12:21:01 2019, john.w.raby2.civ at mail.mil wrote:
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > I like your idea. What is the impact of not having gsl?
> > > >
> > > > What is the next step to install METViewer?
> > > >
> > > > R/
> > > > John
> > > >
> > > > -----Original Message-----
> > > >   From: Tatiana Burek via RT
> > > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > Sent: Wednesday, August 7, 2019 11:20 AM
> > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > you can install METviewer without gsl package.
> > > >
> > > >
> > > > Tatiana
> > > > On Wed Aug 07 09:46:16 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > Thanks for taking a look at the error anyway. Do you have a
> > > > > choice which gsl version gets installed? The loading of the
R
> > > > > package apparently prescribes what version is installed. Is
> > > > > this
> > > > > your understanding?
> > > > >
> > > > > If I had the option of independently installing a different
gsl
> > > > > version myself and was lucky enough to get a version which
> > > > > successfully compiles, would it be possible to have R use
this
> > > > > version for the loading of the gsl package?
> > > > >
> > > > > Can  I proceed with installing METViewer  despite not having
> > > > > the
> > > > > gsl package loaded?
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > > -----Original Message-----
> > > > >   From: Tatiana Burek via RT
> > > > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > Sent: Wednesday, August 7, 2019 9:31 AM
> > > > >    To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing
> > > > > METviewer
> > > > >
> > > > > All active links contained in this email were disabled.
Please
> > > > > verify the identity of the sender, and confirm the
authenticity
> > > > > of all links contained within the message prior to copying
and
> > > > > pasting the address to a Web browser.
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > ----
> > > > >
> > > > > John,
> > > > >
> > > > > I am not an expert in gsl installs and I can't replicate
this
> > > > > problem on our servers.
> > > > > Looks like some gsl users have similar errors:
> > > > > Caution-Caution-Caution-
> > > > > Caution-https://github.com/RobinHankin/gsl/issues/
> > > > > 4 According to this thread the problem can be in GSL
version.
> > > > > Pleas take a look at the comments by user 'RobinHankin'
about
> > > > > the multiple or old versons.
> > > > >
> > > > > Tatiana
> > > > >
> > > > > On Wed Aug 07 07:28:44 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > Tatiana -
> > > > > >
> > > > > > This morning I tried a couple of tests to see if I could
load
> > > > > > the gsl R package. First, I opened a terminal and just ran
> > > > > > the
> > > > > > install command in R as before but selected a different
CRAN
> > > > > > site for downloading the package. The result was the same
as
> > > > > > the error I reported in my email below.
> > > > > >
> > > > > > Then I opened a new terminal and set the env variables you
> > > > > > described in an earlier email for bash. I then attempted
to
> > > > > > install the gsl R package, but this time the dialog was
> > > > > > different.
> > > > > > Apparently it got past the issue which prevented execution
> > > > > > before, and now it can't compile the package. See the
> > > > > > following
> > > > > > dialog:
> > > > > >
> > > > > > trying URL
> > > > > > 'Caution-
> > > > > > Caution-
> > > > > > Caution-
> > > > > > Caution-
> > > > > > https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > > > > 1
> > > > > > -
> > > > > > 6.tar.gz'
> > > > > >   Content type 'application/octet-stream' length 189794
bytes
> > > > > > (185
> > > > > > KB) ==================================================
> > > > > > downloaded 185 KB
> > > > > >
> > > > > > * installing *source* package 'gsl' ...
> > > > > > ** package 'gsl' successfully unpacked and MD5 sums
checked
> > > > > > ** using staged installation
> > > > > >      checking for gsl-config... /usr/bin/gsl-config
checking
> > > > > > if
> > > > > > GSL version
> > > > > > > = 2.1... checking for gcc... gcc checking whether the C
> > > > > > > compiler
> > > > > > works... yes checking for C compiler default output file
> > > > > > name...
> > > > > > a.out
> > > > > > checking for suffix of executables...
> > > > > >     checking whether we are cross compiling... no checking
> > > > > > for
> > > > > > suffix  of object files... o checking whether we are using
> > > > > > the
> > > > > > GNU C compiler...
> > > > > >    yes checking whether gcc accepts -g... yes checking for
> > > > > > gcc
> > > > > > option to accept ISO C89... none needed yes
> > > > > > configure: creating ./config.status
> > > > > > config.status: creating src/Makevars
> > > > > > ** libs
> > > > > >   gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
-DNDEBUG
> > > > > >     -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > > > > -c
> > > > > > airy.c -o airy.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > > -DNDEBUG
> > > > > >      -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > > > > -c  bessel.c  -o bessel.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > > -O2
> > > > > >   -c clausen.c -o clausen.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-
> > > > > > 3.6.1/include"
> > > > > > -DNDEBUG
> > > > > >      -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > > > > -c  coulomb.c -o coulomb.o gcc -std=gnu99
-I"/home/jraby/R/R-
> > > > > > 3.6.1/include"
> > > > > > -DNDEBUG
> > > > > >      -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > > > > -c  coupling.c -o coupling.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > > -O2
> > > > > >   -c dawson.c -o dawson.o gcc -std=gnu99
-I"/home/jraby/R/R-
> > > > > > 3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > > -O2
> > > > > >   -c debye.c -o debye.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > > -O2
> > > > > >   -c dilog.c -o dilog.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > > -O2
> > > > > > -c ellint.c -o ellint.o
> > > > > > ellint.c: In function 'ellint_D_e':
> > > > > > ellint.c:82:5: warning: passing argument 4 of
> > > > > > 'gsl_sf_ellint_D_e'
> > > > > > makes integer from pointer without a cast [enabled by
> > > > > > default]
> > > > > >   status[i] = gsl_sf_ellint_D_e(phi[i], k[i],
sf_mode[*mode],
> > > > > > &result) ;
> > > > > >   ^
> > > > > > In file included from ellint.c:1:0:
> > > > > >  /usr/include/gsl/gsl_sf_ellint.h:84:5: note: expected
> > > > > > 'gsl_mode_t'
> > > > > > but
> > > > > > argument is of type 'struct gsl_sf_result *'
> > > > > >    int gsl_sf_ellint_D_e(double phi, double k, double n,
> > > > > > gsl_mode_t mode, gsl_sf_result * result);
> > > > > >   ^
> > > > > >    ellint.c:82:5: error: too few arguments to function
> > > > > > 'gsl_sf_ellint_D_e'
> > > > > >   status[i] = gsl_sf_ellint_D_e(phi[i], k[i],
sf_mode[*mode],
> > > > > > &result) ;
> > > > > >   ^
> > > > > > In file included from ellint.c:1:0:
> > > > > >      /usr/include/gsl/gsl_sf_ellint.h:84:5: note: declared
> > > > > > here
> > > > > > int  gsl_sf_ellint_D_e(double phi, double k, double n,
> > > > > > gsl_mode_t mode, gsl_sf_result * result);
> > > > > >   ^
> > > > > > make: *** [ellint.o] Error 1
> > > > > > ERROR: compilation failed for package 'gsl'
> > > > > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > > > > >
> > > > > > The downloaded source packages are in
> > > > > >         '/home/jraby/tmp/RtmpO0i7Ze/downloaded_packages'
> > > > > > Updating HTML index of packages in '.Library'
> > > > > > Making 'packages.html' ... done Warning message:
> > > > > > In install.packages("gsl") :
> > > > > >   installation of package 'gsl' had non-zero exit status
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > > ________________________________________
> > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > Sent: Tuesday, August 06, 2019 4:39 PM
> > > > > > To: met_help at ucar.edu
> > > > > >      Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > Installing METviewer (UNCLASSIFIED)
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > My sysadm installed gsl-devel using the command you
provided.
> > > > > > I just tried to load the R package, but it has the same
> > > > > > error:
> > > > > >
> > > > > > > install.packages('gsl')
> > > > > > --- Please select a CRAN mirror for use in this session
--- I
> > > > > > selected
> > > > > > 63 (USA MI)
> > > > > >
> > > > > > trying URL
> > > > > > 'Caution-
> > > > > > Caution-
> > > > > > Caution-
> > > > > > Caution-
> > > > > > https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > > > > 1
> > > > > > -
> > > > > > 6.tar.gz'
> > > > > >   Content type 'application/octet-stream' length 189794
bytes
> > > > > > (185
> > > > > > KB) ==================================================
> > > > > > downloaded 185 KB
> > > > > >
> > > > > > * installing *source* package 'gsl' ...
> > > > > > ** package 'gsl' successfully unpacked and MD5 sums
checked
> > > > > > ** using staged installation
> > > > > >      ERROR: 'configure' exists but is not executable --
see
> > > > > > the
> > > > > > 'R Installation and Administration Manual'
> > > > > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > > > > >
> > > > > > The downloaded source packages are in
> > > > > >         '/tmp/RtmpFotJTN/downloaded_packages'
> > > > > > Updating HTML index of packages in '.Library'
> > > > > > Making 'packages.html' ... done Warning message:
> > > > > > In install.packages("gsl") :
> > > > > >   installation of package 'gsl' had non-zero exit status
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > >
> > > > > > -----Original Message-----
> > > > > >  From: Tatiana Burek via RT
> > > > > > [Caution-Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > Sent: Tuesday, August 6, 2019 3:17 PM
> > > > > >     To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > <john.w.raby2.civ at mail.mil>
> > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > All active links contained in this email were disabled.
> > > > > > Please verify the identity of the sender, and confirm the
> > > > > > authenticity of all links contained within the message
prior
> > > > > > to copying and pasting the address to a Web browser.
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > ----
> > > > > >
> > > > > > I checked R gsl dependencies and it does require gsl-devel
To
> > > > > > install gsl-devel you (or your sys admin)  need to run yum
> > > > > > install gsl-devel
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > > So, gsl itself is not required in order to have a
> > > > > > > successful
> > > > > > > install of the R package gsl, correct?
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > >    From: Tatiana Burek via RT
> > > > > > > [Caution-Caution-Caution-Caution-Caution-
> > > > > > > mailto:met_help at uca
> > > > > > > r.edu]
> > > > > > > Sent: Tuesday, August 6, 2019 2:50 PM
> > > > > > >      To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > Installing METviewer
> > > > > > >
> > > > > > > gsl and "R package gsl" are different libraries and are
> > > > > > > needed to be installed separately.
> > > > > > > I'm not sure that  there is a dependency between of them
> > > > > > > but
> > > > > > > if there is than R gsl would depend on the standard gsl.
> > > > > > >
> > > > > > > Tatiana
> > > > > > >
> > > > > > > On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil
> > > > > > > wrote:
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > Thanks for your guidance on resolving the issues. I
will
> > > > > > > > consult with my sysadm and get back to you soon.
> > > > > > > >
> > > > > > > > Regards the gsl package, I read about the eclv plot
and I
> > > > > > > > don't have an interest at the present time. Was the
> > > > > > > > loading of the gsl package supposed to do an install
of
> > > > > > > > the gsl? I have installed gsl as part of the
provisioning
> > > > > > > > required prior to installing MET
> > > > > > > > V5.2 on the HPC. If I was able to do that on my
> > > > > > > > workstation and was successful, would that alleviate
the
> > > > > > > > problem and allow the package to be installed?
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > >     From: Tatiana Burek via RT
> > > > > > > > [Caution-Caution-Caution-Caution-Caution-
> > > > > > > > mailto:met_help at u
> > > > > > > > car.edu]
> > > > > > > > Sent: Tuesday, August 6, 2019 2:13 PM
> > > > > > > >      To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > >       Subject: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > > > Installing METviewer
> > > > > > > >
> > > > > > > > John,
> > > > > > > >
> > > > > > > > By default, R uses the /tmp directory to install
> > > > > > > > packages.
> > > > > > > > The
> > > > > > > >   /tmp directory is often marked as “noexec”. This
means
> > > > > > > > that no file under /tmp can ever be executed.
> > > > > > > >   To solve this problem you need  to set the TMPDIR
> > > > > > > > environment
> > > > > > > > variable:
> > > > > > > > For csh shell:
> > > > > > > > mkdir ~/tmp
> > > > > > > > setenv TMPDIR ~/tmp
> > > > > > > >
> > > > > > > > for bash:
> > > > > > > > mkdir ~/tmp
> > > > > > > > export TMPDIR=~/tmp
> > > > > > > >
> > > > > > > > gsl package is only needed for Eclv plot. If you are
not
> > > > > > > > planning to create these plots you don't need to
install
> > > > > > > > this package.
> > > > > > > >
> > > > > > > > Tatiana
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil
> > > > > > > > wrote:
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > Today I was able to resume the loading of the R
> > > > > > > > > packages
> > > > > > > > > you specified in an earlier email. There were issues
> > > > > > > > > encountered when loading 'gsl"
> > > > > > > > > and 'verification'. I'm not sure where to start
> > > > > > > > > debugging the issues.
> > > > > > > > > I captured the screen dialog so you can see more
> > > > > > > > > specific info about them. See attached text file.
> > > > > > > > >
> > > > > > > > > The R packages which appear to have loaded
successfully
> > > > > > > > > are:
> > > > > > > > > 'boot', 'plotrix', and 'data.table'
> > > > > > > > >
> > > > > > > > > What do you recommend for troubleshooting these
issues?
> > > > > > > > >
> > > > > > > > > At this point, I believe that you have all the info
you
> > > > > > > > > requested which was provided in earlier emails.
> > > > > > > > >
> > > > > > > > > Let me know if you need additional info to proceed.
> > > > > > > > >
> > > > > > > > > Thanks.
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > >  John
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > ________________________________________
> > > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > > > > > > > To: met_help at ucar.edu
> > > > > > > > >        Subject: RE: [Non-DoD Source]
[rt.rap.ucar.edu
> > > > > > > > > #91137] Installing METviewer (UNCLASSIFIED)
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > I'm sorry about the delay in getting back to you
with
> > > > > > > > > an
> > > > > > > > > update.
> > > > > > > > >
> > > > > > > > > My workstation is fully operational now. I have not
had
> > > > > > > > > a chance to load the remaining R packages.
> > > > > > > > >
> > > > > > > > > In answer to the questions you asked me:
> > > > > > > > >
> > > > > > > > > - database host and port. By default it is
> > > > > > > > > localhost:3306.
> > > > > > > > > Will this apply to your server?
> > > > > > > > >    YES
> > > > > > > > >   - database user name and password. This is for the
> > > > > > > > > user that would insert and retrieve date to/from
> > > > > > > > > database
> > > > > > > > >    ruser / whitesands
> > > > > > > > > - the path to Tomcat's webapp directory
> > > > > > > > >    /opt/tomcat7/webapp
> > > > > > > > > - the path where the R executables will be
installed.
> > > > > > > > >    /home/jraby/R/R-3.6.1/bin/
> > > > > > > > >   - path to Java. By default it is java. Will this
> > > > > > > > > apply
> > > > > > > > > to your server?
> > > > > > > > >    /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > > > > > > > - path where the METViewer executables should be
> > > > > > > > > located.
> > > > > > > > >    /home/jraby/METViewer
> > > > > > > > >
> > > > > > > > > Let me know if you need other details.
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > Sent: Thursday, July 25, 2019 8:35 AM
> > > > > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > > > > >        Subject: RE: [Non-DoD Source]
[rt.rap.ucar.edu
> > > > > > > > > #91137] Installing METviewer
> > > > > > > > > (UNCLASSIFIED)
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > FYI, the issue with my workstation has been resolved
> > > > > > > > > and
> > > > > > > > > I should receive it back in my office today. I will
> > > > > > > > > load
> > > > > > > > > the remaining R packages which you listed in your
> > > > > > > > > earlier email.
> > > > > > > > > I'll have my system admin send you the info you
> > > > > > > > > requested last week soon.
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > Sent: Friday, July 19, 2019 3:23 PM
> > > > > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > > > > >        Subject: RE: [Non-DoD Source]
[rt.rap.ucar.edu
> > > > > > > > > #91137] Installing METviewer
> > > > > > > > > (UNCLASSIFIED)
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > My system admin was able to change the permissions
on
> > > > > > > > > the library and all other directories in the install
> > > > > > > > > directory and I was able to load the first R package
> > > > > > > > > successfully
> > > > > > > > > at:
> > > > > > > > > /home/jraby/R/R-3.6.1/library
> > > > > > > > >
> > > > > > > > > My system admin was working on obtaining the rest of
> > > > > > > > > the
> > > > > > > > > info you requested.
> > > > > > > > > Unfortunately, the workstation would not complete a
> > > > > > > > > reboot and cannot be accessed now. He is looking
into
> > > > > > > > > resolving that problem now. Not sure whether the
> > > > > > > > > problem
> > > > > > > > > is connected with the installation of the new apps
> > > > > > > > > associated with getting the system provisioned for
> > > > > > > > > METViewer, but it is strangely coincident.
> > > > > > > > >
> > > > > > > > > I'll be back in touch on Monday to provide an update
on
> > > > > > > > > the status.
> > > > > > > > >
> > > > > > > > > Have a great weekend!
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > >   From: Tatiana Burek via RT
> > > > > > > > >  [Caution-Caution-Caution-Caution-
> > > > > > > > > Caution-mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Friday, July 19, 2019 12:57 PM
> > > > > > > > >       To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > >        Subject: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > > #91137]
> > > > > > > > > Installing METviewer
> > > > > > > > >
> > > > > > > > > METviewer can work with personal libraries. Let me
know
> > > > > > > > > the path and I add it to build.
> > > > > > > > > Is it /home/jraby/R/R-3.6.1/library?
> > > > > > > > >
> > > > > > > > > Tatiana
> > > > > > > > >
> > > > > > > > > On Fri Jul 19 12:39:28 2019,
john.w.raby2.civ at mail.mil
> > > > > > > > > wrote:
> > > > > > > > > > Tatiana -
> > > > > > > > > >
> > > > > > > > > > Thanks for the info and guidance.
> > > > > > > > > >
> > > > > > > > > > I tried loading the R packages with user
permissions,
> > > > > > > > > > but it can't due to an apparent permissions issue.
> > > > > > > > > > See
> > > > > > > > > > the following
> > > > > > > > > > dialog:
> > > > > > > > > > > install.packages('boot')
> > > > > > > > > > Warning in install.packages("boot") :
> > > > > > > > > >           'lib = "/home/jraby/R/R-3.6.1/library"'
is
> > > > > > > > > > not
> > > > > > > > > >  writable Would you like to use a personal library
> > > > > > > > > > instead?
> > > > > > > > > > (yes/No/cancel)
> > > > > > > > > >
> > > > > > > > > > If I set up a "personal" library as they suggest,
> > > > > > > > > > will
> > > > > > > > > > METViewer have an issue?
> > > > > > > > > >
> > > > > > > > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > > > > > > > >
> > > > > > > > > > My system admin is working on getting answers to
the
> > > > > > > > > > remaining questions.
> > > > > > > > > >
> > > > > > > > > > R/
> > > > > > > > > > John
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > ________________________________________
> > > > > > > > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > > > > > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > > > > > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > >        Subject: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > > > #91137] Installing METviewer
> > > > > > > > > >
> > > > > > > > > > Hi John,
> > > > > > > > > > Were you able to install the additional R
packages?
> > > > > > > > > >      I can build and provide you .war file as well
as
> > > > > > > > > > other executables.
> > > > > > > > > > For that, I need some parameters  to build these
> > > > > > > > > > files:
> > > > > > > > > >      - database host and port. By default it is
> > > > > > > > > > localhost:3306.
> > > > > > > > > > Will this apply to your server?
> > > > > > > > > >        - database user name and password. This is
for
> > > > > > > > > >  the user that would insert and retrieve date
to/from
> > > > > > > > > > database
> > > > > > > > > >        - the path to Rscript executable. By
default
> > > > > > > > > > it
> > > > > > > > > > is just Rscript.Will this apply to your server?
> > > > > > > > > > - the path to Tomcat's webapp directory
> > > > > > > > > > - the path where the executables will be
installed.
> > > > > > > > > >        - path to Java. By default it is java. Will
> > > > > > > > > > this
> > > > > > > > > > apply to your server?
> > > > > > > > > >
> > > > > > > > > > Tatiana
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > On Fri Jul 19 10:39:13 2019,
> > > > > > > > > > john.w.raby2.civ at mail.mil
> > > > > > > > > > wrote:
> > > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > > >
> > > > > > > > > > > Tatiana -
> > > > > > > > > > >
> > > > > > > > > > > At this time, the system admin has the following
> > > > > > > > > > > installed on my
> > > > > > > > > > > workstation:
> > > > > > > > > > > MariaDB, Java, Tomcat, and R
> > > > > > > > > > >
> > > > > > > > > > > He says that a .war file is needed and that it
must
> > > > > > > > > > > be placed in a specific directory under Tomcat
to
> > > > > > > > > > > allow the METViewer to deploy.
> > > > > > > > > > >
> > > > > > > > > > > Based on this, what is the next step?
> > > > > > > > > > >
> > > > > > > > > > > Thanks.
> > > > > > > > > > >
> > > > > > > > > > > R/
> > > > > > > > > > > John
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > >     From: Tatiana Burek via RT
> > > > > > > > > > >  [Caution-Caution-Caution-Caution-
> > > > > > > > > > > Caution-mailto:met_help at ucar.
> > > > > > > > > > > edu]
> > > > > > > > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > > > > > > > >        To: Raby, John W CIV USARMY CCDC ARL
(USA)
> > > > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > > > >        Subject: [Non-DoD Source]
[rt.rap.ucar.edu
> > > > > > > > > > > #91137] Installing METviewer
> > > > > > > > > > >
> > > > > > > > > > > - METviewer will work with any version of Tomcat
> > > > > > > > > > > starting from
> > > > > > > > > > > Tomcat6
> > > > > > > > > > > and
> > > > > > > > > > > ending with  Tomcat8.
> > > > > > > > > > > - You can install packages after R is installed.
> > > > > > > > > > >   - METviewer supports MariaDB. We use this
setup
> > > > > > > > > > > on
> > > > > > > > > > > one of our servers
> > > > > > > > > > >   - By  modules I mean the load/batch portion of
> > > > > > > > > > > METviewer ( the command line interface ) and the
> > > > > > > > > > > web
> > > > > > > > > > > application.
> > > > > > > > > > >
> > > > > > > > > > > The batch/load module is basically a folder with
> > > > > > > > > > > scripts and executables. Web application comes
as a
> > > > > > > > > > > .war file that can be put under Tomcat.
> > > > > > > > > > > Ant build script requires some setting variables
> > > > > > > > > > > and
> > > > > > > > > > > builds both modules OR you would give me
settings
> > > > > > > > > > > and I build modules for you.
> > > > > > > > > > >
> > > > > > > > > > > Tatiana
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > On Thu Jul 18 14:00:51 2019,
> > > > > > > > > > > john.w.raby2.civ at mail.mil
> > > > > > > > > > > wrote:
> > > > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > > > >
> > > > > > > > > > > > Tatiana -
> > > > > > > > > > > >
> > > > > > > > > > > > My system admin has started the provisioning
of
> > > > > > > > > > > > my
> > > > > > > > > > > > workstation.
> > > > > > > > > > > >
> > > > > > > > > > > > In answer to your question about Java the
> > > > > > > > > > > > following shows the
> > > > > > > > > > > > version:
> > > > > > > > > > > > java -version
> > > > > > > > > > > > java version "1.8.0_212"
> > > > > > > > > > > > Java(TM) SE Runtime Environment (build
> > > > > > > > > > > > 1.8.0_212-b10) Java
> > > > > > > > > > > > HotSpot(TM)
> > > > > > > > > > > > 64-Bit Server VM (build 25.212-b10, mixed
mode)
> > > > > > > > > > > >
> > > > > > > > > > > > Regards my preference for the running mode, I
> > > > > > > > > > > > would like to use the web UI. Is there a
version
> > > > > > > > > > > > requirement for Tomcat?
> > > > > > > > > > > >
> > > > > > > > > > > > He has installed MariaDB (myql for RHEL7) and
is
> > > > > > > > > > > > currently in the process of installing R. I
> > > > > > > > > > > > assume
> > > > > > > > > > > > that once R is installed that I can install
the
> > > > > > > > > > > > packages you mention below, correct?
> > > > > > > > > > > >
> > > > > > > > > > > > I'm not quite sure what METViewer modules are
for
> > > > > > > > > > > > answering your question about whether I want
to
> > > > > > > > > > > > build them or have you do it.
> > > > > > > > > > > > Could
> > > > > > > > > > > > you provide more explanation or point me to
where
> > > > > > > > > > > > I can read more?
> > > > > > > > > > > >
> > > > > > > > > > > > R/
> > > > > > > > > > > > John
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > >     From: Tatiana Burek via RT
> > > > > > > > > > > >  [Caution-Caution-Caution-Caution-
> > > > > > > > > > > > Caution-mailto:met_help at uca r.edu]
> > > > > > > > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > > > > > > > >        To: Raby, John W CIV USARMY CCDC ARL
(USA)
> > > > > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > > > > >        Subject: [Non-DoD Source]
[rt.rap.ucar.edu
> > > > > > > > > > > > #91137] Installing METviewer
> > > > > > > > > > > >
> > > > > > > > > > > > All active links contained in this email were
> > > > > > > > > > > > disabled.
> > > > > > > > > > > >      Please verify the identity of the sender,
> > > > > > > > > > > > and
> > > > > > > > > > > > confirm  the  authenticity of all links
contained
> > > > > > > > > > > > within the  message prior to copying and
pasting
> > > > > > > > > > > > the address to a Web browser.
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > ----
> > > > > > > > > > > >
> > > > > > > > > > > > Hi John,
> > > > > > > > > > > >          Are you planning to run METviewer
using
> > > > > > > > > > > >  the batch  mode  only  (from the command
line
> > > > > > > > > > > > with XML
> > > > > > > > > > > >  configuration) or with the web user interface
> > > > > > > > > > > > option?
> > > > > > > > > > > > If you
> > > > > > > > > > > >          need UI you need to install Tomcat.
With
> > > > > > > > > > > > Tomcat  only,  you can  access UI using
Caution-
> > > > > > > > > > > >   Caution-Caution-Caution-
> > > > > > > > > > > > Caution-Caution-
http://localhost:8080/metviewer.
> > > > > > > > > > > >       For  more advanced settings you need to
use
> > > > > > > > > > > > Apache/Tomcat configurations.
> > > > > > > > > > > > You also need to install R packages from R
> > > > > > > > > > > > console:
> > > > > > > > > > > > install.packages('boot')
> > > > > > > > > > > > install.packages('plotrix')
> > > > > > > > > > > > install.packages('gsl')
> > > > > > > > > > > > install.packages('data.table')
> > > > > > > > > > > > install.packages('verification')
> > > > > > > > > > > >
> > > > > > > > > > > > I can build METviewer modules for you or you
can
> > > > > > > > > > > > do it by yourself.
> > > > > > > > > > > > In
> > > > > > > > > > > > this case you need to install Ant. Let me know
> > > > > > > > > > > > your preference.
> > > > > > > > > > > > What is the version of Java you going to use?
> > > > > > > > > > > >
> > > > > > > > > > > > Tatiana
> > > > > > > > > > > >
> > > > > > > > > > > > Tatiana
> > > > > > > > > > > >
> > > > > > > > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > > > > > > > I am starting the preps to have METViewer
> > > > > > > > > > > > > installed on my local linux workstation. I
> > > > > > > > > > > > > already have Java and need to have R and
MySQL
> > > > > > > > > > > > > installed.
> > > > > > > > > > > > > Anything else?
> > > > > > > > > > > > >
> > > > > > > > > > > > > R/
> > > > > > > > > > > > > John
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > >
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



------------------------------------------------
Subject: Installing METviewer
From: Raby, John W USA CIV
Time: Tue Aug 13 10:57:48 2019

CLASSIFICATION: UNCLASSIFIED

Tatiana -

Thanks for your explanation of the next steps regarding the database
creation and the adding of the schema followed by the loading of my
data. I will proceed using your guidance and report back on the
results.

R/
John

-----Original Message-----
From: Tatiana Burek via RT [mailto:met_help at ucar.edu]
Sent: Tuesday, August 13, 2019 10:35 AM
To: Raby, John W CIV USARMY CCDC ARL (USA) <john.w.raby2.civ at mail.mil>
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

All active links contained in this email were disabled.  Please verify
the identity of the sender, and confirm the authenticity of all links
contained within the message prior to copying and pasting the address
to a Web browser.




----

John,
METviewer web UI doesn't load date. It uses XML files that describe
configurations for plotting.

To load data, first you need to create a database an add schema to it.
The database name has to start with 'mv_'. For example, mv_test. The
schema is in /home/jraby/METViewer/sql/mv_mysql.sql:
 - mysql -u<your_user_name> -p<your_pwd> -e 'create database mv_test'
 - mysql -u<your_user_name> -p<your_pwd> mv_test <
/home/jraby/METViewer/sql/mv_mysql.sql

Now you need to create a XML file based on the example from load.html
page that points to your data and run loading script
/home/jraby/METViewer/bin/mv_load.sh with XML file as a parameter:
/home/jraby/METViewer/bin/mv_load.sh mv_spec.xml

Tatiana

On Fri Aug 09 11:18:27 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> Thanks for your response to my question about the java path. Also
> appreciate your suggestions for enabling the app to display plots.
>
> Do you have an example of the XML file which is read into the
database
> which points METViewer to the .stat files you want it to work with?
>
> I've been reading the documentation at
> Caution-http://www.dtcenter.org/met/metviewer/doc/load.html
>
> The XML file I believe is called the "load_spec_file" or "XML load
> specification doc" correct? For the web UI, my understanding is that
> you click on the button "Load XML" to go through the process of
> loading the database.
>
> R/
> John
>
>
>
> -----Original Message-----
>  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> Sent: Friday, August 9, 2019 8:55 AM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> All active links contained in this email were disabled.  Please
verify
> the identity of the sender, and confirm the authenticity of all
links
> contained within the message prior to copying and pasting the
address
> to a Web browser.
>
>
>
>
> ----
>
> John,
> The host name of your server is Caution-
> Caution-http://carson2.arl.army.mil:8080 and I built the web app
with
> localhost:8080.
> In orhter for the app to dispay plots you need to edit the file:
>  /opt/tomcat7/webapps/metviewer/WEB-
INF/classes/mvservlet.properties.
> Replace url.output value:
> url.output=Caution-Caution-
http://carson2.arl.army.mil:8080/metviewer_
> output/
> and restart Tomcat.
>
> You also need to modify the path to Java in other scripts:
> mv_batch.sh
> mv_prune.sh
> mv_scorecard.sh
>
> Tatiana
>
>
> On Wed Aug 07 14:48:04 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > The files are not attached to the email below.
> >
> > R/
> >  John
> >
> > -----Original Message-----
> >  From: Tatiana Burek via RT
> > [Caution-Caution-mailto:met_help at ucar.edu]
> > Sent: Wednesday, August 7, 2019 2:35 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > All active links contained in this email were disabled.  Please
> > verify the identity of the sender, and confirm the authenticity of
> > all links contained within the message prior to copying and
pasting
> > the address to a Web browser.
> >
> >
> >
> >
> > ----
> >
> > John,
> >  I just sent you files.
> >  I have a feeling that the HelpDeck system for some reason blocks
> > attachments.
> >  Let me know if you reserve the files and if not I will send them
to
> > you directly.
> >
> > Tatiana
> >
> > On Wed Aug 07 14:16:02 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > I checked my email and I don't see an email from you on 01 AUG.
> > > Not sure what happened. Could you resend it?
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > >   From: Tatiana Burek via RT
> > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > Sent: Wednesday, August 7, 2019 1:23 PM
> > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > All active links contained in this email were disabled.  Please
> > > verify the identity of the sender, and confirm the authenticity
of
> > > all links contained within the message prior to copying and
> > > pasting the address to a Web browser.
> > >
> > >
> > >
> > >
> > > ----
> > >
> > > John,
> > >   I sent you install files with the instructions on Aug.1. Have
> > > you receive them?
> > >
> > > Tatiana
> > > On Wed Aug 07 12:21:01 2019, john.w.raby2.civ at mail.mil wrote:
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > I like your idea. What is the impact of not having gsl?
> > > >
> > > > What is the next step to install METViewer?
> > > >
> > > > R/
> > > > John
> > > >
> > > > -----Original Message-----
> > > >   From: Tatiana Burek via RT
> > > > [Caution-Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > Sent: Wednesday, August 7, 2019 11:20 AM
> > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > you can install METviewer without gsl package.
> > > >
> > > >
> > > > Tatiana
> > > > On Wed Aug 07 09:46:16 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > Thanks for taking a look at the error anyway. Do you have a
> > > > > choice which gsl version gets installed? The loading of the
R
> > > > > package apparently prescribes what version is installed. Is
> > > > > this your understanding?
> > > > >
> > > > > If I had the option of independently installing a different
> > > > > gsl version myself and was lucky enough to get a version
which
> > > > > successfully compiles, would it be possible to have R use
this
> > > > > version for the loading of the gsl package?
> > > > >
> > > > > Can  I proceed with installing METViewer  despite not having
> > > > > the gsl package loaded?
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > > -----Original Message-----
> > > > >   From: Tatiana Burek via RT
> > > > > [Caution-Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > Sent: Wednesday, August 7, 2019 9:31 AM
> > > > >    To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing METviewer
> > > > >
> > > > > All active links contained in this email were disabled.
> > > > > Please verify the identity of the sender, and confirm the
> > > > > authenticity of all links contained within the message prior
> > > > > to copying and pasting the address to a Web browser.
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > ----
> > > > >
> > > > > John,
> > > > >
> > > > > I am not an expert in gsl installs and I can't replicate
this
> > > > > problem on our servers.
> > > > > Looks like some gsl users have similar errors:
> > > > > Caution-Caution-Caution-
> > > > > Caution-Caution-https://github.com/RobinHankin/gsl/issues/
> > > > > 4 According to this thread the problem can be in GSL
version.
> > > > > Pleas take a look at the comments by user 'RobinHankin'
about
> > > > > the multiple or old versons.
> > > > >
> > > > > Tatiana
> > > > >
> > > > > On Wed Aug 07 07:28:44 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > Tatiana -
> > > > > >
> > > > > > This morning I tried a couple of tests to see if I could
> > > > > > load the gsl R package. First, I opened a terminal and
just
> > > > > > ran the install command in R as before but selected a
> > > > > > different CRAN site for downloading the package. The
result
> > > > > > was the same as the error I reported in my email below.
> > > > > >
> > > > > > Then I opened a new terminal and set the env variables you
> > > > > > described in an earlier email for bash. I then attempted
to
> > > > > > install the gsl R package, but this time the dialog was
> > > > > > different.
> > > > > > Apparently it got past the issue which prevented execution
> > > > > > before, and now it can't compile the package. See the
> > > > > > following
> > > > > > dialog:
> > > > > >
> > > > > > trying URL
> > > > > > 'Caution-
> > > > > > Caution-
> > > > > > Caution-
> > > > > > Caution-
> > > > > > Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > > > > 1
> > > > > > -
> > > > > > 6.tar.gz'
> > > > > >   Content type 'application/octet-stream' length 189794
> > > > > > bytes
> > > > > > (185
> > > > > > KB) ==================================================
> > > > > > downloaded 185 KB
> > > > > >
> > > > > > * installing *source* package 'gsl' ...
> > > > > > ** package 'gsl' successfully unpacked and MD5 sums
checked
> > > > > > ** using staged installation
> > > > > >      checking for gsl-config... /usr/bin/gsl-config
checking
> > > > > > if GSL version
> > > > > > > = 2.1... checking for gcc... gcc checking whether the C
> > > > > > > compiler
> > > > > > works... yes checking for C compiler default output file
> > > > > > name...
> > > > > > a.out
> > > > > > checking for suffix of executables...
> > > > > >     checking whether we are cross compiling... no checking
> > > > > > for suffix  of object files... o checking whether we are
> > > > > > using the GNU C compiler...
> > > > > >    yes checking whether gcc accepts -g... yes checking for
> > > > > > gcc option to accept ISO C89... none needed yes
> > > > > > configure: creating ./config.status
> > > > > > config.status: creating src/Makevars
> > > > > > ** libs
> > > > > >   gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
-DNDEBUG
> > > > > >     -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > > > > -c airy.c -o airy.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > > -DNDEBUG
> > > > > >      -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > > > > -c  bessel.c  -o bessel.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
> > > > > > -g
> > > > > > -O2
> > > > > >   -c clausen.c -o clausen.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-
> > > > > > 3.6.1/include"
> > > > > > -DNDEBUG
> > > > > >      -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > > > > -c  coulomb.c -o coulomb.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R- 3.6.1/include"
> > > > > > -DNDEBUG
> > > > > >      -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > > > > -c  coupling.c -o coupling.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
> > > > > > -g
> > > > > > -O2
> > > > > >   -c dawson.c -o dawson.o gcc -std=gnu99
-I"/home/jraby/R/R-
> > > > > > 3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
> > > > > > -g
> > > > > > -O2
> > > > > >   -c debye.c -o debye.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
> > > > > > -g
> > > > > > -O2
> > > > > >   -c dilog.c -o dilog.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
> > > > > > -g
> > > > > > -O2
> > > > > > -c ellint.c -o ellint.o
> > > > > > ellint.c: In function 'ellint_D_e':
> > > > > > ellint.c:82:5: warning: passing argument 4 of
> > > > > > 'gsl_sf_ellint_D_e'
> > > > > > makes integer from pointer without a cast [enabled by
> > > > > > default]
> > > > > >   status[i] = gsl_sf_ellint_D_e(phi[i], k[i],
> > > > > > sf_mode[*mode],
> > > > > > &result) ;
> > > > > >   ^
> > > > > > In file included from ellint.c:1:0:
> > > > > >  /usr/include/gsl/gsl_sf_ellint.h:84:5: note: expected
> > > > > > 'gsl_mode_t'
> > > > > > but
> > > > > > argument is of type 'struct gsl_sf_result *'
> > > > > >    int gsl_sf_ellint_D_e(double phi, double k, double n,
> > > > > > gsl_mode_t mode, gsl_sf_result * result);
> > > > > >   ^
> > > > > >    ellint.c:82:5: error: too few arguments to function
> > > > > > 'gsl_sf_ellint_D_e'
> > > > > >   status[i] = gsl_sf_ellint_D_e(phi[i], k[i],
> > > > > > sf_mode[*mode],
> > > > > > &result) ;
> > > > > >   ^
> > > > > > In file included from ellint.c:1:0:
> > > > > >      /usr/include/gsl/gsl_sf_ellint.h:84:5: note: declared
> > > > > > here int  gsl_sf_ellint_D_e(double phi, double k, double
n,
> > > > > > gsl_mode_t mode, gsl_sf_result * result);
> > > > > >   ^
> > > > > > make: *** [ellint.o] Error 1
> > > > > > ERROR: compilation failed for package 'gsl'
> > > > > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > > > > >
> > > > > > The downloaded source packages are in
> > > > > >         '/home/jraby/tmp/RtmpO0i7Ze/downloaded_packages'
> > > > > > Updating HTML index of packages in '.Library'
> > > > > > Making 'packages.html' ... done Warning message:
> > > > > > In install.packages("gsl") :
> > > > > >   installation of package 'gsl' had non-zero exit status
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > > ________________________________________
> > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > Sent: Tuesday, August 06, 2019 4:39 PM
> > > > > > To: met_help at ucar.edu
> > > > > >      Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > Installing METviewer (UNCLASSIFIED)
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > My sysadm installed gsl-devel using the command you
provided.
> > > > > > I just tried to load the R package, but it has the same
> > > > > > error:
> > > > > >
> > > > > > > install.packages('gsl')
> > > > > > --- Please select a CRAN mirror for use in this session
---
> > > > > > I selected
> > > > > > 63 (USA MI)
> > > > > >
> > > > > > trying URL
> > > > > > 'Caution-
> > > > > > Caution-
> > > > > > Caution-
> > > > > > Caution-
> > > > > > Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > > > > 1
> > > > > > -
> > > > > > 6.tar.gz'
> > > > > >   Content type 'application/octet-stream' length 189794
> > > > > > bytes
> > > > > > (185
> > > > > > KB) ==================================================
> > > > > > downloaded 185 KB
> > > > > >
> > > > > > * installing *source* package 'gsl' ...
> > > > > > ** package 'gsl' successfully unpacked and MD5 sums
checked
> > > > > > ** using staged installation
> > > > > >      ERROR: 'configure' exists but is not executable --
see
> > > > > > the 'R Installation and Administration Manual'
> > > > > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > > > > >
> > > > > > The downloaded source packages are in
> > > > > >         '/tmp/RtmpFotJTN/downloaded_packages'
> > > > > > Updating HTML index of packages in '.Library'
> > > > > > Making 'packages.html' ... done Warning message:
> > > > > > In install.packages("gsl") :
> > > > > >   installation of package 'gsl' had non-zero exit status
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > >
> > > > > > -----Original Message-----
> > > > > >  From: Tatiana Burek via RT
> > > > > > [Caution-Caution-Caution-Caution-Caution-
mailto:met_help at uca
> > > > > > r.edu]
> > > > > > Sent: Tuesday, August 6, 2019 3:17 PM
> > > > > >     To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > <john.w.raby2.civ at mail.mil>
> > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > All active links contained in this email were disabled.
> > > > > > Please verify the identity of the sender, and confirm the
> > > > > > authenticity of all links contained within the message
prior
> > > > > > to copying and pasting the address to a Web browser.
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > ----
> > > > > >
> > > > > > I checked R gsl dependencies and it does require gsl-devel
> > > > > > To install gsl-devel you (or your sys admin)  need to run
> > > > > > yum install gsl-devel
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > > So, gsl itself is not required in order to have a
> > > > > > > successful install of the R package gsl, correct?
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > >    From: Tatiana Burek via RT
> > > > > > > [Caution-Caution-Caution-Caution-Caution-
> > > > > > > Caution-mailto:met_help at uca r.edu]
> > > > > > > Sent: Tuesday, August 6, 2019 2:50 PM
> > > > > > >      To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > Installing METviewer
> > > > > > >
> > > > > > > gsl and "R package gsl" are different libraries and are
> > > > > > > needed to be installed separately.
> > > > > > > I'm not sure that  there is a dependency between of them
> > > > > > > but if there is than R gsl would depend on the standard
> > > > > > > gsl.
> > > > > > >
> > > > > > > Tatiana
> > > > > > >
> > > > > > > On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil
> > > > > > > wrote:
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > Thanks for your guidance on resolving the issues. I
will
> > > > > > > > consult with my sysadm and get back to you soon.
> > > > > > > >
> > > > > > > > Regards the gsl package, I read about the eclv plot
and
> > > > > > > > I don't have an interest at the present time. Was the
> > > > > > > > loading of the gsl package supposed to do an install
of
> > > > > > > > the gsl? I have installed gsl as part of the
> > > > > > > > provisioning required prior to installing MET
> > > > > > > > V5.2 on the HPC. If I was able to do that on my
> > > > > > > > workstation and was successful, would that alleviate
the
> > > > > > > > problem and allow the package to be installed?
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > >     From: Tatiana Burek via RT
> > > > > > > > [Caution-Caution-Caution-Caution-Caution-
> > > > > > > > Caution-mailto:met_help at u car.edu]
> > > > > > > > Sent: Tuesday, August 6, 2019 2:13 PM
> > > > > > > >      To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > >       Subject: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > > > Installing METviewer
> > > > > > > >
> > > > > > > > John,
> > > > > > > >
> > > > > > > > By default, R uses the /tmp directory to install
> > > > > > > > packages.
> > > > > > > > The
> > > > > > > >   /tmp directory is often marked as “noexec”. This
means
> > > > > > > > that no file under /tmp can ever be executed.
> > > > > > > >   To solve this problem you need  to set the TMPDIR
> > > > > > > > environment
> > > > > > > > variable:
> > > > > > > > For csh shell:
> > > > > > > > mkdir ~/tmp
> > > > > > > > setenv TMPDIR ~/tmp
> > > > > > > >
> > > > > > > > for bash:
> > > > > > > > mkdir ~/tmp
> > > > > > > > export TMPDIR=~/tmp
> > > > > > > >
> > > > > > > > gsl package is only needed for Eclv plot. If you are
not
> > > > > > > > planning to create these plots you don't need to
install
> > > > > > > > this package.
> > > > > > > >
> > > > > > > > Tatiana
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil
> > > > > > > > wrote:
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > Today I was able to resume the loading of the R
> > > > > > > > > packages you specified in an earlier email. There
were
> > > > > > > > > issues encountered when loading 'gsl"
> > > > > > > > > and 'verification'. I'm not sure where to start
> > > > > > > > > debugging the issues.
> > > > > > > > > I captured the screen dialog so you can see more
> > > > > > > > > specific info about them. See attached text file.
> > > > > > > > >
> > > > > > > > > The R packages which appear to have loaded
> > > > > > > > > successfully
> > > > > > > > > are:
> > > > > > > > > 'boot', 'plotrix', and 'data.table'
> > > > > > > > >
> > > > > > > > > What do you recommend for troubleshooting these
issues?
> > > > > > > > >
> > > > > > > > > At this point, I believe that you have all the info
> > > > > > > > > you requested which was provided in earlier emails.
> > > > > > > > >
> > > > > > > > > Let me know if you need additional info to proceed.
> > > > > > > > >
> > > > > > > > > Thanks.
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > >  John
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > ________________________________________
> > > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > > > > > > > To: met_help at ucar.edu
> > > > > > > > >        Subject: RE: [Non-DoD Source]
[rt.rap.ucar.edu
> > > > > > > > > #91137] Installing METviewer (UNCLASSIFIED)
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > I'm sorry about the delay in getting back to you
with
> > > > > > > > > an update.
> > > > > > > > >
> > > > > > > > > My workstation is fully operational now. I have not
> > > > > > > > > had a chance to load the remaining R packages.
> > > > > > > > >
> > > > > > > > > In answer to the questions you asked me:
> > > > > > > > >
> > > > > > > > > - database host and port. By default it is
> > > > > > > > > localhost:3306.
> > > > > > > > > Will this apply to your server?
> > > > > > > > >    YES
> > > > > > > > >   - database user name and password. This is for the
> > > > > > > > > user that would insert and retrieve date to/from
> > > > > > > > > database
> > > > > > > > >    ruser / whitesands
> > > > > > > > > - the path to Tomcat's webapp directory
> > > > > > > > >    /opt/tomcat7/webapp
> > > > > > > > > - the path where the R executables will be
installed.
> > > > > > > > >    /home/jraby/R/R-3.6.1/bin/
> > > > > > > > >   - path to Java. By default it is java. Will this
> > > > > > > > > apply to your server?
> > > > > > > > >    /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > > > > > > > - path where the METViewer executables should be
> > > > > > > > > located.
> > > > > > > > >    /home/jraby/METViewer
> > > > > > > > >
> > > > > > > > > Let me know if you need other details.
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > Sent: Thursday, July 25, 2019 8:35 AM
> > > > > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > > > > >        Subject: RE: [Non-DoD Source]
[rt.rap.ucar.edu
> > > > > > > > > #91137] Installing METviewer
> > > > > > > > > (UNCLASSIFIED)
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > FYI, the issue with my workstation has been resolved
> > > > > > > > > and I should receive it back in my office today. I
> > > > > > > > > will load the remaining R packages which you listed
in
> > > > > > > > > your earlier email.
> > > > > > > > > I'll have my system admin send you the info you
> > > > > > > > > requested last week soon.
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > Sent: Friday, July 19, 2019 3:23 PM
> > > > > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > > > > >        Subject: RE: [Non-DoD Source]
[rt.rap.ucar.edu
> > > > > > > > > #91137] Installing METviewer
> > > > > > > > > (UNCLASSIFIED)
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > My system admin was able to change the permissions
on
> > > > > > > > > the library and all other directories in the install
> > > > > > > > > directory and I was able to load the first R package
> > > > > > > > > successfully
> > > > > > > > > at:
> > > > > > > > > /home/jraby/R/R-3.6.1/library
> > > > > > > > >
> > > > > > > > > My system admin was working on obtaining the rest of
> > > > > > > > > the info you requested.
> > > > > > > > > Unfortunately, the workstation would not complete a
> > > > > > > > > reboot and cannot be accessed now. He is looking
into
> > > > > > > > > resolving that problem now. Not sure whether the
> > > > > > > > > problem is connected with the installation of the
new
> > > > > > > > > apps associated with getting the system provisioned
> > > > > > > > > for METViewer, but it is strangely coincident.
> > > > > > > > >
> > > > > > > > > I'll be back in touch on Monday to provide an update
> > > > > > > > > on the status.
> > > > > > > > >
> > > > > > > > > Have a great weekend!
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > >   From: Tatiana Burek via RT
> > > > > > > > >  [Caution-Caution-Caution-Caution-
> > > > > > > > > Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Friday, July 19, 2019 12:57 PM
> > > > > > > > >       To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > >        Subject: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > > #91137] Installing METviewer
> > > > > > > > >
> > > > > > > > > METviewer can work with personal libraries. Let me
> > > > > > > > > know the path and I add it to build.
> > > > > > > > > Is it /home/jraby/R/R-3.6.1/library?
> > > > > > > > >
> > > > > > > > > Tatiana
> > > > > > > > >
> > > > > > > > > On Fri Jul 19 12:39:28 2019,
john.w.raby2.civ at mail.mil
> > > > > > > > > wrote:
> > > > > > > > > > Tatiana -
> > > > > > > > > >
> > > > > > > > > > Thanks for the info and guidance.
> > > > > > > > > >
> > > > > > > > > > I tried loading the R packages with user
> > > > > > > > > > permissions, but it can't due to an apparent
permissions issue.
> > > > > > > > > > See
> > > > > > > > > > the following
> > > > > > > > > > dialog:
> > > > > > > > > > > install.packages('boot')
> > > > > > > > > > Warning in install.packages("boot") :
> > > > > > > > > >           'lib = "/home/jraby/R/R-3.6.1/library"'
is
> > > > > > > > > > not  writable Would you like to use a personal
> > > > > > > > > > library instead?
> > > > > > > > > > (yes/No/cancel)
> > > > > > > > > >
> > > > > > > > > > If I set up a "personal" library as they suggest,
> > > > > > > > > > will METViewer have an issue?
> > > > > > > > > >
> > > > > > > > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > > > > > > > >
> > > > > > > > > > My system admin is working on getting answers to
the
> > > > > > > > > > remaining questions.
> > > > > > > > > >
> > > > > > > > > > R/
> > > > > > > > > > John
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > ________________________________________
> > > > > > > > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > > > > > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > > > > > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > >        Subject: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > > > #91137] Installing METviewer
> > > > > > > > > >
> > > > > > > > > > Hi John,
> > > > > > > > > > Were you able to install the additional R
packages?
> > > > > > > > > >      I can build and provide you .war file as well
> > > > > > > > > > as other executables.
> > > > > > > > > > For that, I need some parameters  to build these
> > > > > > > > > > files:
> > > > > > > > > >      - database host and port. By default it is
> > > > > > > > > > localhost:3306.
> > > > > > > > > > Will this apply to your server?
> > > > > > > > > >        - database user name and password. This is
> > > > > > > > > > for  the user that would insert and retrieve date
> > > > > > > > > > to/from database
> > > > > > > > > >        - the path to Rscript executable. By
default
> > > > > > > > > > it is just Rscript.Will this apply to your server?
> > > > > > > > > > - the path to Tomcat's webapp directory
> > > > > > > > > > - the path where the executables will be
installed.
> > > > > > > > > >        - path to Java. By default it is java. Will
> > > > > > > > > > this apply to your server?
> > > > > > > > > >
> > > > > > > > > > Tatiana
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > On Fri Jul 19 10:39:13 2019,
> > > > > > > > > > john.w.raby2.civ at mail.mil
> > > > > > > > > > wrote:
> > > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > > >
> > > > > > > > > > > Tatiana -
> > > > > > > > > > >
> > > > > > > > > > > At this time, the system admin has the following
> > > > > > > > > > > installed on my
> > > > > > > > > > > workstation:
> > > > > > > > > > > MariaDB, Java, Tomcat, and R
> > > > > > > > > > >
> > > > > > > > > > > He says that a .war file is needed and that it
> > > > > > > > > > > must be placed in a specific directory under
> > > > > > > > > > > Tomcat to allow the METViewer to deploy.
> > > > > > > > > > >
> > > > > > > > > > > Based on this, what is the next step?
> > > > > > > > > > >
> > > > > > > > > > > Thanks.
> > > > > > > > > > >
> > > > > > > > > > > R/
> > > > > > > > > > > John
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > >     From: Tatiana Burek via RT
> > > > > > > > > > >  [Caution-Caution-Caution-Caution-
> > > > > > > > > > > Caution-Caution-mailto:met_help at ucar.
> > > > > > > > > > > edu]
> > > > > > > > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > > > > > > > >        To: Raby, John W CIV USARMY CCDC ARL
(USA)
> > > > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > > > >        Subject: [Non-DoD Source]
[rt.rap.ucar.edu
> > > > > > > > > > > #91137] Installing METviewer
> > > > > > > > > > >
> > > > > > > > > > > - METviewer will work with any version of Tomcat
> > > > > > > > > > > starting from
> > > > > > > > > > > Tomcat6
> > > > > > > > > > > and
> > > > > > > > > > > ending with  Tomcat8.
> > > > > > > > > > > - You can install packages after R is installed.
> > > > > > > > > > >   - METviewer supports MariaDB. We use this
setup
> > > > > > > > > > > on one of our servers
> > > > > > > > > > >   - By  modules I mean the load/batch portion of
> > > > > > > > > > > METviewer ( the command line interface ) and the
> > > > > > > > > > > web application.
> > > > > > > > > > >
> > > > > > > > > > > The batch/load module is basically a folder with
> > > > > > > > > > > scripts and executables. Web application comes
as
> > > > > > > > > > > a .war file that can be put under Tomcat.
> > > > > > > > > > > Ant build script requires some setting variables
> > > > > > > > > > > and builds both modules OR you would give me
> > > > > > > > > > > settings and I build modules for you.
> > > > > > > > > > >
> > > > > > > > > > > Tatiana
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > On Thu Jul 18 14:00:51 2019,
> > > > > > > > > > > john.w.raby2.civ at mail.mil
> > > > > > > > > > > wrote:
> > > > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > > > >
> > > > > > > > > > > > Tatiana -
> > > > > > > > > > > >
> > > > > > > > > > > > My system admin has started the provisioning
of
> > > > > > > > > > > > my workstation.
> > > > > > > > > > > >
> > > > > > > > > > > > In answer to your question about Java the
> > > > > > > > > > > > following shows the
> > > > > > > > > > > > version:
> > > > > > > > > > > > java -version
> > > > > > > > > > > > java version "1.8.0_212"
> > > > > > > > > > > > Java(TM) SE Runtime Environment (build
> > > > > > > > > > > > 1.8.0_212-b10) Java
> > > > > > > > > > > > HotSpot(TM)
> > > > > > > > > > > > 64-Bit Server VM (build 25.212-b10, mixed
mode)
> > > > > > > > > > > >
> > > > > > > > > > > > Regards my preference for the running mode, I
> > > > > > > > > > > > would like to use the web UI. Is there a
version
> > > > > > > > > > > > requirement for Tomcat?
> > > > > > > > > > > >
> > > > > > > > > > > > He has installed MariaDB (myql for RHEL7) and
is
> > > > > > > > > > > > currently in the process of installing R. I
> > > > > > > > > > > > assume that once R is installed that I can
> > > > > > > > > > > > install the packages you mention below,
correct?
> > > > > > > > > > > >
> > > > > > > > > > > > I'm not quite sure what METViewer modules are
> > > > > > > > > > > > for answering your question about whether I
want
> > > > > > > > > > > > to build them or have you do it.
> > > > > > > > > > > > Could
> > > > > > > > > > > > you provide more explanation or point me to
> > > > > > > > > > > > where I can read more?
> > > > > > > > > > > >
> > > > > > > > > > > > R/
> > > > > > > > > > > > John
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > >     From: Tatiana Burek via RT
> > > > > > > > > > > >  [Caution-Caution-Caution-Caution-
> > > > > > > > > > > > Caution-Caution-mailto:met_help at uca r.edu]
> > > > > > > > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > > > > > > > >        To: Raby, John W CIV USARMY CCDC ARL
> > > > > > > > > > > > (USA) <john.w.raby2.civ at mail.mil>
> > > > > > > > > > > >        Subject: [Non-DoD Source]
> > > > > > > > > > > > [rt.rap.ucar.edu #91137] Installing METviewer
> > > > > > > > > > > >
> > > > > > > > > > > > All active links contained in this email were
> > > > > > > > > > > > disabled.
> > > > > > > > > > > >      Please verify the identity of the sender,
> > > > > > > > > > > > and confirm  the  authenticity of all links
> > > > > > > > > > > > contained within the  message prior to copying
> > > > > > > > > > > > and pasting the address to a Web browser.
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > ----
> > > > > > > > > > > >
> > > > > > > > > > > > Hi John,
> > > > > > > > > > > >          Are you planning to run METviewer
using
> > > > > > > > > > > > the batch  mode  only  (from the command  line
> > > > > > > > > > > > with XML
> > > > > > > > > > > >  configuration) or with the web user interface
> > > > > > > > > > > > option?
> > > > > > > > > > > > If you
> > > > > > > > > > > >          need UI you need to install Tomcat.
> > > > > > > > > > > > With Tomcat  only,  you can  access UI using
Caution-
> > > > > > > > > > > >   Caution-Caution-Caution-
> > > > > > > > > > > > Caution-Caution-Caution-
http://localhost:8080/metviewer.
> > > > > > > > > > > >       For  more advanced settings you need to
> > > > > > > > > > > > use Apache/Tomcat configurations.
> > > > > > > > > > > > You also need to install R packages from R
> > > > > > > > > > > > console:
> > > > > > > > > > > > install.packages('boot')
> > > > > > > > > > > > install.packages('plotrix')
> > > > > > > > > > > > install.packages('gsl')
> > > > > > > > > > > > install.packages('data.table')
> > > > > > > > > > > > install.packages('verification')
> > > > > > > > > > > >
> > > > > > > > > > > > I can build METviewer modules for you or you
can
> > > > > > > > > > > > do it by yourself.
> > > > > > > > > > > > In
> > > > > > > > > > > > this case you need to install Ant. Let me know
> > > > > > > > > > > > your preference.
> > > > > > > > > > > > What is the version of Java you going to use?
> > > > > > > > > > > >
> > > > > > > > > > > > Tatiana
> > > > > > > > > > > >
> > > > > > > > > > > > Tatiana
> > > > > > > > > > > >
> > > > > > > > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > > > > > > > I am starting the preps to have METViewer
> > > > > > > > > > > > > installed on my local linux workstation. I
> > > > > > > > > > > > > already have Java and need to have R and
MySQL
> > > > > > > > > > > > > installed.
> > > > > > > > > > > > > Anything else?
> > > > > > > > > > > > >
> > > > > > > > > > > > > R/
> > > > > > > > > > > > > John
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > >
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED



CLASSIFICATION: UNCLASSIFIED

------------------------------------------------
Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing METviewer
From: Raby, John W USA CIV
Time: Wed Aug 14 15:24:36 2019

Tatiana -

After using the commands you provided below, my sysadm and I think
that the database has been created and populated with the schemas.
After logging into MariaDB, "show databases" command shows a list as
follows:
+--------------------+
| Database           |
+--------------------+
| information_schema |
| mv_met_data        |
| mv_test            |
| mysql              |
| performance_schema |
| test

Using "show tables" it shows a list of several tables with names which
look like MET line types.

I created the XML file (load_spec_file) which I have attached to this
email and tried to run mv_load.sh, but I'm getting an error which is
hard to understand. See the following dialog:

[jraby at carson2 bin]$ ./mv_load.sh
/home/jraby/Documents/metviewer_data.xml
----  MVLoad  ----

Begin time: 2019-08-14 15:04:37
Parsing: /home/jraby/Documents/metviewer_data.xml

2019-08-14 edu.ucar.metviewer.MVLoad.main(Unknown Source) -1 main -
**  ERROR: Caught class java.lang.NullPointerException: null
java.lang.NullPointerException
----  MVLoad Done  ----
[jraby at carson2 bin]$

Could you troubleshoot this error for us? If you need me to provide
additional information, please let me know.

Thanks.

R/
John

________________________________________
From: Tatiana Burek via RT [met_help at ucar.edu]
Sent: Tuesday, August 13, 2019 10:35 AM
To: Raby, John W CIV USARMY CCDC ARL (USA)
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

All active links contained in this email were disabled.  Please verify
the identity of the sender, and confirm the authenticity of all links
contained within the message prior to copying and pasting the address
to a Web browser.




----

John,
METviewer web UI doesn't load date. It uses XML files that describe
configurations for plotting.

To load data, first you need to create a database an add schema to it.
The database name has to start with 'mv_'. For example, mv_test. The
schema is in /home/jraby/METViewer/sql/mv_mysql.sql:
 - mysql -u<your_user_name> -p<your_pwd> -e 'create database mv_test'
 - mysql -u<your_user_name> -p<your_pwd> mv_test <
/home/jraby/METViewer/sql/mv_mysql.sql

Now you need to create a XML file based on the example from load.html
page that points to your data and run loading script
/home/jraby/METViewer/bin/mv_load.sh with XML file as a parameter:
/home/jraby/METViewer/bin/mv_load.sh mv_spec.xml

Tatiana

On Fri Aug 09 11:18:27 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> Thanks for your response to my question about the java path. Also
> appreciate your suggestions for enabling the app to display plots.
>
> Do you have an example of the XML file which is read into the
database
> which points METViewer to the .stat files you want it to work with?
>
> I've been reading the documentation at
> Caution-http://www.dtcenter.org/met/metviewer/doc/load.html
>
> The XML file I believe is called the "load_spec_file" or "XML load
> specification doc" correct? For the web UI, my understanding is that
> you click on the button "Load XML" to go through the process of
> loading the database.
>
> R/
> John
>
>
>
> -----Original Message-----
>  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> Sent: Friday, August 9, 2019 8:55 AM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> All active links contained in this email were disabled.  Please
verify
> the identity of the sender, and confirm the authenticity of all
links
> contained within the message prior to copying and pasting the
address
> to a Web browser.
>
>
>
>
> ----
>
> John,
> The host name of your server is Caution-
> Caution-http://carson2.arl.army.mil:8080 and I built the web app
with
> localhost:8080.
> In orhter for the app to dispay plots you need to edit the file:
>  /opt/tomcat7/webapps/metviewer/WEB-
INF/classes/mvservlet.properties.
> Replace url.output value:
> url.output=Caution-Caution-
http://carson2.arl.army.mil:8080/metviewer_output/
> and restart Tomcat.
>
> You also need to modify the path to Java in other scripts:
> mv_batch.sh
> mv_prune.sh
> mv_scorecard.sh
>
> Tatiana
>
>
> On Wed Aug 07 14:48:04 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > The files are not attached to the email below.
> >
> > R/
> >  John
> >
> > -----Original Message-----
> >  From: Tatiana Burek via RT [Caution-Caution-
mailto:met_help at ucar.edu]
> > Sent: Wednesday, August 7, 2019 2:35 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > All active links contained in this email were disabled.  Please
> > verify
> > the identity of the sender, and confirm the authenticity of all
links
> > contained within the message prior to copying and pasting the
address
> > to a Web browser.
> >
> >
> >
> >
> > ----
> >
> > John,
> >  I just sent you files.
> >  I have a feeling that the HelpDeck system for some reason blocks
> > attachments.
> >  Let me know if you reserve the files and if not I will send them
to
> > you directly.
> >
> > Tatiana
> >
> > On Wed Aug 07 14:16:02 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > I checked my email and I don't see an email from you on 01 AUG.
Not
> > > sure what happened. Could you resend it?
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > >   From: Tatiana Burek via RT
> > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > Sent: Wednesday, August 7, 2019 1:23 PM
> > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > All active links contained in this email were disabled.  Please
> > > verify the identity of the sender, and confirm the authenticity
of
> > > all links contained within the message prior to copying and
pasting
> > > the address to a Web browser.
> > >
> > >
> > >
> > >
> > > ----
> > >
> > > John,
> > >   I sent you install files with the instructions on Aug.1. Have
you
> > > receive them?
> > >
> > > Tatiana
> > > On Wed Aug 07 12:21:01 2019, john.w.raby2.civ at mail.mil wrote:
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > I like your idea. What is the impact of not having gsl?
> > > >
> > > > What is the next step to install METViewer?
> > > >
> > > > R/
> > > > John
> > > >
> > > > -----Original Message-----
> > > >   From: Tatiana Burek via RT
> > > > [Caution-Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > Sent: Wednesday, August 7, 2019 11:20 AM
> > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > you can install METviewer without gsl package.
> > > >
> > > >
> > > > Tatiana
> > > > On Wed Aug 07 09:46:16 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > Thanks for taking a look at the error anyway. Do you have a
> > > > > choice which gsl version gets installed? The loading of the
R
> > > > > package apparently prescribes what version is installed. Is
> > > > > this
> > > > > your understanding?
> > > > >
> > > > > If I had the option of independently installing a different
gsl
> > > > > version myself and was lucky enough to get a version which
> > > > > successfully compiles, would it be possible to have R use
this
> > > > > version for the loading of the gsl package?
> > > > >
> > > > > Can  I proceed with installing METViewer  despite not having
> > > > > the
> > > > > gsl package loaded?
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > > -----Original Message-----
> > > > >   From: Tatiana Burek via RT
> > > > > [Caution-Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > Sent: Wednesday, August 7, 2019 9:31 AM
> > > > >    To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing
> > > > > METviewer
> > > > >
> > > > > All active links contained in this email were disabled.
Please
> > > > > verify the identity of the sender, and confirm the
authenticity
> > > > > of all links contained within the message prior to copying
and
> > > > > pasting the address to a Web browser.
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > ----
> > > > >
> > > > > John,
> > > > >
> > > > > I am not an expert in gsl installs and I can't replicate
this
> > > > > problem on our servers.
> > > > > Looks like some gsl users have similar errors:
> > > > > Caution-Caution-Caution-
> > > > > Caution-Caution-https://github.com/RobinHankin/gsl/issues/
> > > > > 4 According to this thread the problem can be in GSL
version.
> > > > > Pleas take a look at the comments by user 'RobinHankin'
about
> > > > > the multiple or old versons.
> > > > >
> > > > > Tatiana
> > > > >
> > > > > On Wed Aug 07 07:28:44 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > Tatiana -
> > > > > >
> > > > > > This morning I tried a couple of tests to see if I could
load
> > > > > > the gsl R package. First, I opened a terminal and just ran
> > > > > > the
> > > > > > install command in R as before but selected a different
CRAN
> > > > > > site for downloading the package. The result was the same
as
> > > > > > the error I reported in my email below.
> > > > > >
> > > > > > Then I opened a new terminal and set the env variables you
> > > > > > described in an earlier email for bash. I then attempted
to
> > > > > > install the gsl R package, but this time the dialog was
> > > > > > different.
> > > > > > Apparently it got past the issue which prevented execution
> > > > > > before, and now it can't compile the package. See the
> > > > > > following
> > > > > > dialog:
> > > > > >
> > > > > > trying URL
> > > > > > 'Caution-
> > > > > > Caution-
> > > > > > Caution-
> > > > > > Caution-
> > > > > > Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > > > > 1
> > > > > > -
> > > > > > 6.tar.gz'
> > > > > >   Content type 'application/octet-stream' length 189794
bytes
> > > > > > (185
> > > > > > KB) ==================================================
> > > > > > downloaded 185 KB
> > > > > >
> > > > > > * installing *source* package 'gsl' ...
> > > > > > ** package 'gsl' successfully unpacked and MD5 sums
checked
> > > > > > ** using staged installation
> > > > > >      checking for gsl-config... /usr/bin/gsl-config
checking
> > > > > > if
> > > > > > GSL version
> > > > > > > = 2.1... checking for gcc... gcc checking whether the C
> > > > > > > compiler
> > > > > > works... yes checking for C compiler default output file
> > > > > > name...
> > > > > > a.out
> > > > > > checking for suffix of executables...
> > > > > >     checking whether we are cross compiling... no checking
> > > > > > for
> > > > > > suffix  of object files... o checking whether we are using
> > > > > > the
> > > > > > GNU C compiler...
> > > > > >    yes checking whether gcc accepts -g... yes checking for
> > > > > > gcc
> > > > > > option to accept ISO C89... none needed yes
> > > > > > configure: creating ./config.status
> > > > > > config.status: creating src/Makevars
> > > > > > ** libs
> > > > > >   gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
-DNDEBUG
> > > > > >     -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > > > > -c
> > > > > > airy.c -o airy.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > > -DNDEBUG
> > > > > >      -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > > > > -c  bessel.c  -o bessel.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > > -O2
> > > > > >   -c clausen.c -o clausen.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-
> > > > > > 3.6.1/include"
> > > > > > -DNDEBUG
> > > > > >      -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > > > > -c  coulomb.c -o coulomb.o gcc -std=gnu99
-I"/home/jraby/R/R-
> > > > > > 3.6.1/include"
> > > > > > -DNDEBUG
> > > > > >      -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > > > > -c  coupling.c -o coupling.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > > -O2
> > > > > >   -c dawson.c -o dawson.o gcc -std=gnu99
-I"/home/jraby/R/R-
> > > > > > 3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > > -O2
> > > > > >   -c debye.c -o debye.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > > -O2
> > > > > >   -c dilog.c -o dilog.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > > -O2
> > > > > > -c ellint.c -o ellint.o
> > > > > > ellint.c: In function 'ellint_D_e':
> > > > > > ellint.c:82:5: warning: passing argument 4 of
> > > > > > 'gsl_sf_ellint_D_e'
> > > > > > makes integer from pointer without a cast [enabled by
> > > > > > default]
> > > > > >   status[i] = gsl_sf_ellint_D_e(phi[i], k[i],
sf_mode[*mode],
> > > > > > &result) ;
> > > > > >   ^
> > > > > > In file included from ellint.c:1:0:
> > > > > >  /usr/include/gsl/gsl_sf_ellint.h:84:5: note: expected
> > > > > > 'gsl_mode_t'
> > > > > > but
> > > > > > argument is of type 'struct gsl_sf_result *'
> > > > > >    int gsl_sf_ellint_D_e(double phi, double k, double n,
> > > > > > gsl_mode_t mode, gsl_sf_result * result);
> > > > > >   ^
> > > > > >    ellint.c:82:5: error: too few arguments to function
> > > > > > 'gsl_sf_ellint_D_e'
> > > > > >   status[i] = gsl_sf_ellint_D_e(phi[i], k[i],
sf_mode[*mode],
> > > > > > &result) ;
> > > > > >   ^
> > > > > > In file included from ellint.c:1:0:
> > > > > >      /usr/include/gsl/gsl_sf_ellint.h:84:5: note: declared
> > > > > > here
> > > > > > int  gsl_sf_ellint_D_e(double phi, double k, double n,
> > > > > > gsl_mode_t mode, gsl_sf_result * result);
> > > > > >   ^
> > > > > > make: *** [ellint.o] Error 1
> > > > > > ERROR: compilation failed for package 'gsl'
> > > > > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > > > > >
> > > > > > The downloaded source packages are in
> > > > > >         '/home/jraby/tmp/RtmpO0i7Ze/downloaded_packages'
> > > > > > Updating HTML index of packages in '.Library'
> > > > > > Making 'packages.html' ... done Warning message:
> > > > > > In install.packages("gsl") :
> > > > > >   installation of package 'gsl' had non-zero exit status
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > > ________________________________________
> > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > Sent: Tuesday, August 06, 2019 4:39 PM
> > > > > > To: met_help at ucar.edu
> > > > > >      Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > Installing METviewer (UNCLASSIFIED)
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > My sysadm installed gsl-devel using the command you
provided.
> > > > > > I just tried to load the R package, but it has the same
> > > > > > error:
> > > > > >
> > > > > > > install.packages('gsl')
> > > > > > --- Please select a CRAN mirror for use in this session
--- I
> > > > > > selected
> > > > > > 63 (USA MI)
> > > > > >
> > > > > > trying URL
> > > > > > 'Caution-
> > > > > > Caution-
> > > > > > Caution-
> > > > > > Caution-
> > > > > > Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > > > > 1
> > > > > > -
> > > > > > 6.tar.gz'
> > > > > >   Content type 'application/octet-stream' length 189794
bytes
> > > > > > (185
> > > > > > KB) ==================================================
> > > > > > downloaded 185 KB
> > > > > >
> > > > > > * installing *source* package 'gsl' ...
> > > > > > ** package 'gsl' successfully unpacked and MD5 sums
checked
> > > > > > ** using staged installation
> > > > > >      ERROR: 'configure' exists but is not executable --
see
> > > > > > the
> > > > > > 'R Installation and Administration Manual'
> > > > > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > > > > >
> > > > > > The downloaded source packages are in
> > > > > >         '/tmp/RtmpFotJTN/downloaded_packages'
> > > > > > Updating HTML index of packages in '.Library'
> > > > > > Making 'packages.html' ... done Warning message:
> > > > > > In install.packages("gsl") :
> > > > > >   installation of package 'gsl' had non-zero exit status
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > >
> > > > > > -----Original Message-----
> > > > > >  From: Tatiana Burek via RT
> > > > > > [Caution-Caution-Caution-Caution-Caution-
mailto:met_help at ucar.edu]
> > > > > > Sent: Tuesday, August 6, 2019 3:17 PM
> > > > > >     To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > <john.w.raby2.civ at mail.mil>
> > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > All active links contained in this email were disabled.
> > > > > > Please verify the identity of the sender, and confirm the
> > > > > > authenticity of all links contained within the message
prior
> > > > > > to copying and pasting the address to a Web browser.
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > ----
> > > > > >
> > > > > > I checked R gsl dependencies and it does require gsl-devel
To
> > > > > > install gsl-devel you (or your sys admin)  need to run yum
> > > > > > install gsl-devel
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > > So, gsl itself is not required in order to have a
> > > > > > > successful
> > > > > > > install of the R package gsl, correct?
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > >    From: Tatiana Burek via RT
> > > > > > > [Caution-Caution-Caution-Caution-Caution-
> > > > > > > Caution-mailto:met_help at uca
> > > > > > > r.edu]
> > > > > > > Sent: Tuesday, August 6, 2019 2:50 PM
> > > > > > >      To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > Installing METviewer
> > > > > > >
> > > > > > > gsl and "R package gsl" are different libraries and are
> > > > > > > needed to be installed separately.
> > > > > > > I'm not sure that  there is a dependency between of them
> > > > > > > but
> > > > > > > if there is than R gsl would depend on the standard gsl.
> > > > > > >
> > > > > > > Tatiana
> > > > > > >
> > > > > > > On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil
> > > > > > > wrote:
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > Thanks for your guidance on resolving the issues. I
will
> > > > > > > > consult with my sysadm and get back to you soon.
> > > > > > > >
> > > > > > > > Regards the gsl package, I read about the eclv plot
and I
> > > > > > > > don't have an interest at the present time. Was the
> > > > > > > > loading of the gsl package supposed to do an install
of
> > > > > > > > the gsl? I have installed gsl as part of the
provisioning
> > > > > > > > required prior to installing MET
> > > > > > > > V5.2 on the HPC. If I was able to do that on my
> > > > > > > > workstation and was successful, would that alleviate
the
> > > > > > > > problem and allow the package to be installed?
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > >     From: Tatiana Burek via RT
> > > > > > > > [Caution-Caution-Caution-Caution-Caution-
> > > > > > > > Caution-mailto:met_help at u
> > > > > > > > car.edu]
> > > > > > > > Sent: Tuesday, August 6, 2019 2:13 PM
> > > > > > > >      To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > >       Subject: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > > > Installing METviewer
> > > > > > > >
> > > > > > > > John,
> > > > > > > >
> > > > > > > > By default, R uses the /tmp directory to install
> > > > > > > > packages.
> > > > > > > > The
> > > > > > > >   /tmp directory is often marked as "noexec". This
means
> > > > > > > > that no file under /tmp can ever be executed.
> > > > > > > >   To solve this problem you need  to set the TMPDIR
> > > > > > > > environment
> > > > > > > > variable:
> > > > > > > > For csh shell:
> > > > > > > > mkdir ~/tmp
> > > > > > > > setenv TMPDIR ~/tmp
> > > > > > > >
> > > > > > > > for bash:
> > > > > > > > mkdir ~/tmp
> > > > > > > > export TMPDIR=~/tmp
> > > > > > > >
> > > > > > > > gsl package is only needed for Eclv plot. If you are
not
> > > > > > > > planning to create these plots you don't need to
install
> > > > > > > > this package.
> > > > > > > >
> > > > > > > > Tatiana
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil
> > > > > > > > wrote:
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > Today I was able to resume the loading of the R
> > > > > > > > > packages
> > > > > > > > > you specified in an earlier email. There were issues
> > > > > > > > > encountered when loading 'gsl"
> > > > > > > > > and 'verification'. I'm not sure where to start
> > > > > > > > > debugging the issues.
> > > > > > > > > I captured the screen dialog so you can see more
> > > > > > > > > specific info about them. See attached text file.
> > > > > > > > >
> > > > > > > > > The R packages which appear to have loaded
successfully
> > > > > > > > > are:
> > > > > > > > > 'boot', 'plotrix', and 'data.table'
> > > > > > > > >
> > > > > > > > > What do you recommend for troubleshooting these
issues?
> > > > > > > > >
> > > > > > > > > At this point, I believe that you have all the info
you
> > > > > > > > > requested which was provided in earlier emails.
> > > > > > > > >
> > > > > > > > > Let me know if you need additional info to proceed.
> > > > > > > > >
> > > > > > > > > Thanks.
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > >  John
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > ________________________________________
> > > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > > > > > > > To: met_help at ucar.edu
> > > > > > > > >        Subject: RE: [Non-DoD Source]
[rt.rap.ucar.edu
> > > > > > > > > #91137] Installing METviewer (UNCLASSIFIED)
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > I'm sorry about the delay in getting back to you
with
> > > > > > > > > an
> > > > > > > > > update.
> > > > > > > > >
> > > > > > > > > My workstation is fully operational now. I have not
had
> > > > > > > > > a chance to load the remaining R packages.
> > > > > > > > >
> > > > > > > > > In answer to the questions you asked me:
> > > > > > > > >
> > > > > > > > > - database host and port. By default it is
> > > > > > > > > localhost:3306.
> > > > > > > > > Will this apply to your server?
> > > > > > > > >    YES
> > > > > > > > >   - database user name and password. This is for the
> > > > > > > > > user that would insert and retrieve date to/from
> > > > > > > > > database
> > > > > > > > >    ruser / whitesands
> > > > > > > > > - the path to Tomcat's webapp directory
> > > > > > > > >    /opt/tomcat7/webapp
> > > > > > > > > - the path where the R executables will be
installed.
> > > > > > > > >    /home/jraby/R/R-3.6.1/bin/
> > > > > > > > >   - path to Java. By default it is java. Will this
> > > > > > > > > apply
> > > > > > > > > to your server?
> > > > > > > > >    /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > > > > > > > - path where the METViewer executables should be
> > > > > > > > > located.
> > > > > > > > >    /home/jraby/METViewer
> > > > > > > > >
> > > > > > > > > Let me know if you need other details.
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > Sent: Thursday, July 25, 2019 8:35 AM
> > > > > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > > > > >        Subject: RE: [Non-DoD Source]
[rt.rap.ucar.edu
> > > > > > > > > #91137] Installing METviewer
> > > > > > > > > (UNCLASSIFIED)
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > FYI, the issue with my workstation has been resolved
> > > > > > > > > and
> > > > > > > > > I should receive it back in my office today. I will
> > > > > > > > > load
> > > > > > > > > the remaining R packages which you listed in your
> > > > > > > > > earlier email.
> > > > > > > > > I'll have my system admin send you the info you
> > > > > > > > > requested last week soon.
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > Sent: Friday, July 19, 2019 3:23 PM
> > > > > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > > > > >        Subject: RE: [Non-DoD Source]
[rt.rap.ucar.edu
> > > > > > > > > #91137] Installing METviewer
> > > > > > > > > (UNCLASSIFIED)
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > My system admin was able to change the permissions
on
> > > > > > > > > the library and all other directories in the install
> > > > > > > > > directory and I was able to load the first R package
> > > > > > > > > successfully
> > > > > > > > > at:
> > > > > > > > > /home/jraby/R/R-3.6.1/library
> > > > > > > > >
> > > > > > > > > My system admin was working on obtaining the rest of
> > > > > > > > > the
> > > > > > > > > info you requested.
> > > > > > > > > Unfortunately, the workstation would not complete a
> > > > > > > > > reboot and cannot be accessed now. He is looking
into
> > > > > > > > > resolving that problem now. Not sure whether the
> > > > > > > > > problem
> > > > > > > > > is connected with the installation of the new apps
> > > > > > > > > associated with getting the system provisioned for
> > > > > > > > > METViewer, but it is strangely coincident.
> > > > > > > > >
> > > > > > > > > I'll be back in touch on Monday to provide an update
on
> > > > > > > > > the status.
> > > > > > > > >
> > > > > > > > > Have a great weekend!
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > >   From: Tatiana Burek via RT
> > > > > > > > >  [Caution-Caution-Caution-Caution-
> > > > > > > > > Caution-Caution-mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Friday, July 19, 2019 12:57 PM
> > > > > > > > >       To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > >        Subject: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > > #91137]
> > > > > > > > > Installing METviewer
> > > > > > > > >
> > > > > > > > > METviewer can work with personal libraries. Let me
know
> > > > > > > > > the path and I add it to build.
> > > > > > > > > Is it /home/jraby/R/R-3.6.1/library?
> > > > > > > > >
> > > > > > > > > Tatiana
> > > > > > > > >
> > > > > > > > > On Fri Jul 19 12:39:28 2019,
john.w.raby2.civ at mail.mil
> > > > > > > > > wrote:
> > > > > > > > > > Tatiana -
> > > > > > > > > >
> > > > > > > > > > Thanks for the info and guidance.
> > > > > > > > > >
> > > > > > > > > > I tried loading the R packages with user
permissions,
> > > > > > > > > > but it can't due to an apparent permissions issue.
> > > > > > > > > > See
> > > > > > > > > > the following
> > > > > > > > > > dialog:
> > > > > > > > > > > install.packages('boot')
> > > > > > > > > > Warning in install.packages("boot") :
> > > > > > > > > >           'lib = "/home/jraby/R/R-3.6.1/library"'
is
> > > > > > > > > > not
> > > > > > > > > >  writable Would you like to use a personal library
> > > > > > > > > > instead?
> > > > > > > > > > (yes/No/cancel)
> > > > > > > > > >
> > > > > > > > > > If I set up a "personal" library as they suggest,
> > > > > > > > > > will
> > > > > > > > > > METViewer have an issue?
> > > > > > > > > >
> > > > > > > > > > The path to Rscript is /home/jraby/R/R-3.6.1/bin
> > > > > > > > > >
> > > > > > > > > > My system admin is working on getting answers to
the
> > > > > > > > > > remaining questions.
> > > > > > > > > >
> > > > > > > > > > R/
> > > > > > > > > > John
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > ________________________________________
> > > > > > > > > > From: Tatiana Burek via RT [met_help at ucar.edu]
> > > > > > > > > > Sent: Friday, July 19, 2019 12:05 PM
> > > > > > > > > > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > >        Subject: [Non-DoD Source] [rt.rap.ucar.edu
> > > > > > > > > > #91137] Installing METviewer
> > > > > > > > > >
> > > > > > > > > > Hi John,
> > > > > > > > > > Were you able to install the additional R
packages?
> > > > > > > > > >      I can build and provide you .war file as well
as
> > > > > > > > > > other executables.
> > > > > > > > > > For that, I need some parameters  to build these
> > > > > > > > > > files:
> > > > > > > > > >      - database host and port. By default it is
> > > > > > > > > > localhost:3306.
> > > > > > > > > > Will this apply to your server?
> > > > > > > > > >        - database user name and password. This is
for
> > > > > > > > > >  the user that would insert and retrieve date
to/from
> > > > > > > > > > database
> > > > > > > > > >        - the path to Rscript executable. By
default
> > > > > > > > > > it
> > > > > > > > > > is just Rscript.Will this apply to your server?
> > > > > > > > > > - the path to Tomcat's webapp directory
> > > > > > > > > > - the path where the executables will be
installed.
> > > > > > > > > >        - path to Java. By default it is java. Will
> > > > > > > > > > this
> > > > > > > > > > apply to your server?
> > > > > > > > > >
> > > > > > > > > > Tatiana
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > On Fri Jul 19 10:39:13 2019,
> > > > > > > > > > john.w.raby2.civ at mail.mil
> > > > > > > > > > wrote:
> > > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > > >
> > > > > > > > > > > Tatiana -
> > > > > > > > > > >
> > > > > > > > > > > At this time, the system admin has the following
> > > > > > > > > > > installed on my
> > > > > > > > > > > workstation:
> > > > > > > > > > > MariaDB, Java, Tomcat, and R
> > > > > > > > > > >
> > > > > > > > > > > He says that a .war file is needed and that it
must
> > > > > > > > > > > be placed in a specific directory under Tomcat
to
> > > > > > > > > > > allow the METViewer to deploy.
> > > > > > > > > > >
> > > > > > > > > > > Based on this, what is the next step?
> > > > > > > > > > >
> > > > > > > > > > > Thanks.
> > > > > > > > > > >
> > > > > > > > > > > R/
> > > > > > > > > > > John
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > >     From: Tatiana Burek via RT
> > > > > > > > > > >  [Caution-Caution-Caution-Caution-
> > > > > > > > > > > Caution-Caution-mailto:met_help at ucar.
> > > > > > > > > > > edu]
> > > > > > > > > > > Sent: Thursday, July 18, 2019 2:24 PM
> > > > > > > > > > >        To: Raby, John W CIV USARMY CCDC ARL
(USA)
> > > > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > > > >        Subject: [Non-DoD Source]
[rt.rap.ucar.edu
> > > > > > > > > > > #91137] Installing METviewer
> > > > > > > > > > >
> > > > > > > > > > > - METviewer will work with any version of Tomcat
> > > > > > > > > > > starting from
> > > > > > > > > > > Tomcat6
> > > > > > > > > > > and
> > > > > > > > > > > ending with  Tomcat8.
> > > > > > > > > > > - You can install packages after R is installed.
> > > > > > > > > > >   - METviewer supports MariaDB. We use this
setup
> > > > > > > > > > > on
> > > > > > > > > > > one of our servers
> > > > > > > > > > >   - By  modules I mean the load/batch portion of
> > > > > > > > > > > METviewer ( the command line interface ) and the
> > > > > > > > > > > web
> > > > > > > > > > > application.
> > > > > > > > > > >
> > > > > > > > > > > The batch/load module is basically a folder with
> > > > > > > > > > > scripts and executables. Web application comes
as a
> > > > > > > > > > > .war file that can be put under Tomcat.
> > > > > > > > > > > Ant build script requires some setting variables
> > > > > > > > > > > and
> > > > > > > > > > > builds both modules OR you would give me
settings
> > > > > > > > > > > and I build modules for you.
> > > > > > > > > > >
> > > > > > > > > > > Tatiana
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > On Thu Jul 18 14:00:51 2019,
> > > > > > > > > > > john.w.raby2.civ at mail.mil
> > > > > > > > > > > wrote:
> > > > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > > > >
> > > > > > > > > > > > Tatiana -
> > > > > > > > > > > >
> > > > > > > > > > > > My system admin has started the provisioning
of
> > > > > > > > > > > > my
> > > > > > > > > > > > workstation.
> > > > > > > > > > > >
> > > > > > > > > > > > In answer to your question about Java the
> > > > > > > > > > > > following shows the
> > > > > > > > > > > > version:
> > > > > > > > > > > > java -version
> > > > > > > > > > > > java version "1.8.0_212"
> > > > > > > > > > > > Java(TM) SE Runtime Environment (build
> > > > > > > > > > > > 1.8.0_212-b10) Java
> > > > > > > > > > > > HotSpot(TM)
> > > > > > > > > > > > 64-Bit Server VM (build 25.212-b10, mixed
mode)
> > > > > > > > > > > >
> > > > > > > > > > > > Regards my preference for the running mode, I
> > > > > > > > > > > > would like to use the web UI. Is there a
version
> > > > > > > > > > > > requirement for Tomcat?
> > > > > > > > > > > >
> > > > > > > > > > > > He has installed MariaDB (myql for RHEL7) and
is
> > > > > > > > > > > > currently in the process of installing R. I
> > > > > > > > > > > > assume
> > > > > > > > > > > > that once R is installed that I can install
the
> > > > > > > > > > > > packages you mention below, correct?
> > > > > > > > > > > >
> > > > > > > > > > > > I'm not quite sure what METViewer modules are
for
> > > > > > > > > > > > answering your question about whether I want
to
> > > > > > > > > > > > build them or have you do it.
> > > > > > > > > > > > Could
> > > > > > > > > > > > you provide more explanation or point me to
where
> > > > > > > > > > > > I can read more?
> > > > > > > > > > > >
> > > > > > > > > > > > R/
> > > > > > > > > > > > John
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > >     From: Tatiana Burek via RT
> > > > > > > > > > > >  [Caution-Caution-Caution-Caution-
> > > > > > > > > > > > Caution-Caution-mailto:met_help at uca r.edu]
> > > > > > > > > > > > Sent: Thursday, July 18, 2019 11:02 AM
> > > > > > > > > > > >        To: Raby, John W CIV USARMY CCDC ARL
(USA)
> > > > > > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > > > > > >        Subject: [Non-DoD Source]
[rt.rap.ucar.edu
> > > > > > > > > > > > #91137] Installing METviewer
> > > > > > > > > > > >
> > > > > > > > > > > > All active links contained in this email were
> > > > > > > > > > > > disabled.
> > > > > > > > > > > >      Please verify the identity of the sender,
> > > > > > > > > > > > and
> > > > > > > > > > > > confirm  the  authenticity of all links
contained
> > > > > > > > > > > > within the  message prior to copying and
pasting
> > > > > > > > > > > > the address to a Web browser.
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > ----
> > > > > > > > > > > >
> > > > > > > > > > > > Hi John,
> > > > > > > > > > > >          Are you planning to run METviewer
using
> > > > > > > > > > > >  the batch  mode  only  (from the command
line
> > > > > > > > > > > > with XML
> > > > > > > > > > > >  configuration) or with the web user interface
> > > > > > > > > > > > option?
> > > > > > > > > > > > If you
> > > > > > > > > > > >          need UI you need to install Tomcat.
With
> > > > > > > > > > > > Tomcat  only,  you can  access UI using
Caution-
> > > > > > > > > > > >   Caution-Caution-Caution-
> > > > > > > > > > > > Caution-Caution-Caution-
http://localhost:8080/metviewer.
> > > > > > > > > > > >       For  more advanced settings you need to
use
> > > > > > > > > > > > Apache/Tomcat configurations.
> > > > > > > > > > > > You also need to install R packages from R
> > > > > > > > > > > > console:
> > > > > > > > > > > > install.packages('boot')
> > > > > > > > > > > > install.packages('plotrix')
> > > > > > > > > > > > install.packages('gsl')
> > > > > > > > > > > > install.packages('data.table')
> > > > > > > > > > > > install.packages('verification')
> > > > > > > > > > > >
> > > > > > > > > > > > I can build METviewer modules for you or you
can
> > > > > > > > > > > > do it by yourself.
> > > > > > > > > > > > In
> > > > > > > > > > > > this case you need to install Ant. Let me know
> > > > > > > > > > > > your preference.
> > > > > > > > > > > > What is the version of Java you going to use?
> > > > > > > > > > > >
> > > > > > > > > > > > Tatiana
> > > > > > > > > > > >
> > > > > > > > > > > > Tatiana
> > > > > > > > > > > >
> > > > > > > > > > > > On Thu Jul 18 09:36:43 2019, johnhg wrote:
> > > > > > > > > > > > > I am starting the preps to have METViewer
> > > > > > > > > > > > > installed on my local linux workstation. I
> > > > > > > > > > > > > already have Java and need to have R and
MySQL
> > > > > > > > > > > > > installed.
> > > > > > > > > > > > > Anything else?
> > > > > > > > > > > > >
> > > > > > > > > > > > > R/
> > > > > > > > > > > > > John
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > >
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > >
> > > > >
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > >
> > > >
> > > > CLASSIFICATION: UNCLASSIFIED
> > >
> > >
> > >
> > > CLASSIFICATION: UNCLASSIFIED
> >
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
>
> CLASSIFICATION: UNCLASSIFIED





------------------------------------------------
Subject: Installing METviewer
From: Raby, John W USA CIV
Time: Wed Aug 14 15:36:24 2019

Tatiana -

When I sent the email below, I forgot to attach the XML file. I
attached it to this email. Sorry for the confusion.
R/
John
________________________________________
From: Raby, John W CIV USARMY CCDC ARL (USA)
Sent: Wednesday, August 14, 2019 3:22 PM
To: met_help at ucar.edu
Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

Tatiana -

After using the commands you provided below, my sysadm and I think
that the database has been created and populated with the schemas.
After logging into MariaDB, "show databases" command shows a list as
follows:
+--------------------+
| Database           |
+--------------------+
| information_schema |
| mv_met_data        |
| mv_test            |
| mysql              |
| performance_schema |
| test

Using "show tables" it shows a list of several tables with names which
look like MET line types.

I created the XML file (load_spec_file) which I have attached to this
email and tried to run mv_load.sh, but I'm getting an error which is
hard to understand. See the following dialog:

[jraby at carson2 bin]$ ./mv_load.sh
/home/jraby/Documents/metviewer_data.xml
----  MVLoad  ----

Begin time: 2019-08-14 15:04:37
Parsing: /home/jraby/Documents/metviewer_data.xml

2019-08-14 edu.ucar.metviewer.MVLoad.main(Unknown Source) -1 main -
**  ERROR: Caught class java.lang.NullPointerException: null
java.lang.NullPointerException
----  MVLoad Done  ----
[jraby at carson2 bin]$

Could you troubleshoot this error for us? If you need me to provide
additional information, please let me know.

Thanks.

R/
John

________________________________________
From: Tatiana Burek via RT [met_help at ucar.edu]
Sent: Tuesday, August 13, 2019 10:35 AM
To: Raby, John W CIV USARMY CCDC ARL (USA)
Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
METviewer

All active links contained in this email were disabled.  Please verify
the identity of the sender, and confirm the authenticity of all links
contained within the message prior to copying and pasting the address
to a Web browser.




----

John,
METviewer web UI doesn't load date. It uses XML files that describe
configurations for plotting.

To load data, first you need to create a database an add schema to it.
The database name has to start with 'mv_'. For example, mv_test. The
schema is in /home/jraby/METViewer/sql/mv_mysql.sql:
 - mysql -u<your_user_name> -p<your_pwd> -e 'create database mv_test'
 - mysql -u<your_user_name> -p<your_pwd> mv_test <
/home/jraby/METViewer/sql/mv_mysql.sql

Now you need to create a XML file based on the example from load.html
page that points to your data and run loading script
/home/jraby/METViewer/bin/mv_load.sh with XML file as a parameter:
/home/jraby/METViewer/bin/mv_load.sh mv_spec.xml

Tatiana

On Fri Aug 09 11:18:27 2019, john.w.raby2.civ at mail.mil wrote:
> CLASSIFICATION: UNCLASSIFIED
>
> Tatiana -
>
> Thanks for your response to my question about the java path. Also
> appreciate your suggestions for enabling the app to display plots.
>
> Do you have an example of the XML file which is read into the
database
> which points METViewer to the .stat files you want it to work with?
>
> I've been reading the documentation at
> Caution-http://www.dtcenter.org/met/metviewer/doc/load.html
>
> The XML file I believe is called the "load_spec_file" or "XML load
> specification doc" correct? For the web UI, my understanding is that
> you click on the button "Load XML" to go through the process of
> loading the database.
>
> R/
> John
>
>
>
> -----Original Message-----
>  From: Tatiana Burek via RT [Caution-mailto:met_help at ucar.edu]
> Sent: Friday, August 9, 2019 8:55 AM
> To: Raby, John W CIV USARMY CCDC ARL (USA)
<john.w.raby2.civ at mail.mil>
> Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> METviewer
>
> All active links contained in this email were disabled.  Please
verify
> the identity of the sender, and confirm the authenticity of all
links
> contained within the message prior to copying and pasting the
address
> to a Web browser.
>
>
>
>
> ----
>
> John,
> The host name of your server is Caution-
> Caution-http://carson2.arl.army.mil:8080 and I built the web app
with
> localhost:8080.
> In orhter for the app to dispay plots you need to edit the file:
>  /opt/tomcat7/webapps/metviewer/WEB-
INF/classes/mvservlet.properties.
> Replace url.output value:
> url.output=Caution-Caution-
http://carson2.arl.army.mil:8080/metviewer_output/
> and restart Tomcat.
>
> You also need to modify the path to Java in other scripts:
> mv_batch.sh
> mv_prune.sh
> mv_scorecard.sh
>
> Tatiana
>
>
> On Wed Aug 07 14:48:04 2019, john.w.raby2.civ at mail.mil wrote:
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Tatiana -
> >
> > The files are not attached to the email below.
> >
> > R/
> >  John
> >
> > -----Original Message-----
> >  From: Tatiana Burek via RT [Caution-Caution-
mailto:met_help at ucar.edu]
> > Sent: Wednesday, August 7, 2019 2:35 PM
> > To: Raby, John W CIV USARMY CCDC ARL (USA)
> > <john.w.raby2.civ at mail.mil>
> >  Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > METviewer
> >
> > All active links contained in this email were disabled.  Please
> > verify
> > the identity of the sender, and confirm the authenticity of all
links
> > contained within the message prior to copying and pasting the
address
> > to a Web browser.
> >
> >
> >
> >
> > ----
> >
> > John,
> >  I just sent you files.
> >  I have a feeling that the HelpDeck system for some reason blocks
> > attachments.
> >  Let me know if you reserve the files and if not I will send them
to
> > you directly.
> >
> > Tatiana
> >
> > On Wed Aug 07 14:16:02 2019, john.w.raby2.civ at mail.mil wrote:
> > > CLASSIFICATION: UNCLASSIFIED
> > >
> > > Tatiana -
> > >
> > > I checked my email and I don't see an email from you on 01 AUG.
Not
> > > sure what happened. Could you resend it?
> > >
> > > R/
> > > John
> > >
> > > -----Original Message-----
> > >   From: Tatiana Burek via RT
> > > [Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > Sent: Wednesday, August 7, 2019 1:23 PM
> > >  To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > <john.w.raby2.civ at mail.mil>
> > >   Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137] Installing
> > > METviewer
> > >
> > > All active links contained in this email were disabled.  Please
> > > verify the identity of the sender, and confirm the authenticity
of
> > > all links contained within the message prior to copying and
pasting
> > > the address to a Web browser.
> > >
> > >
> > >
> > >
> > > ----
> > >
> > > John,
> > >   I sent you install files with the instructions on Aug.1. Have
you
> > > receive them?
> > >
> > > Tatiana
> > > On Wed Aug 07 12:21:01 2019, john.w.raby2.civ at mail.mil wrote:
> > > > CLASSIFICATION: UNCLASSIFIED
> > > >
> > > > Tatiana -
> > > >
> > > > I like your idea. What is the impact of not having gsl?
> > > >
> > > > What is the next step to install METViewer?
> > > >
> > > > R/
> > > > John
> > > >
> > > > -----Original Message-----
> > > >   From: Tatiana Burek via RT
> > > > [Caution-Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > Sent: Wednesday, August 7, 2019 11:20 AM
> > > >   To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > <john.w.raby2.civ at mail.mil>
> > > >    Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
Installing
> > > > METviewer
> > > >
> > > > you can install METviewer without gsl package.
> > > >
> > > >
> > > > Tatiana
> > > > On Wed Aug 07 09:46:16 2019, john.w.raby2.civ at mail.mil wrote:
> > > > > CLASSIFICATION: UNCLASSIFIED
> > > > >
> > > > > Tatiana -
> > > > >
> > > > > Thanks for taking a look at the error anyway. Do you have a
> > > > > choice which gsl version gets installed? The loading of the
R
> > > > > package apparently prescribes what version is installed. Is
> > > > > this
> > > > > your understanding?
> > > > >
> > > > > If I had the option of independently installing a different
gsl
> > > > > version myself and was lucky enough to get a version which
> > > > > successfully compiles, would it be possible to have R use
this
> > > > > version for the loading of the gsl package?
> > > > >
> > > > > Can  I proceed with installing METViewer  despite not having
> > > > > the
> > > > > gsl package loaded?
> > > > >
> > > > > R/
> > > > > John
> > > > >
> > > > > -----Original Message-----
> > > > >   From: Tatiana Burek via RT
> > > > > [Caution-Caution-Caution-Caution-mailto:met_help at ucar.edu]
> > > > > Sent: Wednesday, August 7, 2019 9:31 AM
> > > > >    To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > <john.w.raby2.civ at mail.mil>
> > > > >     Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > Installing
> > > > > METviewer
> > > > >
> > > > > All active links contained in this email were disabled.
Please
> > > > > verify the identity of the sender, and confirm the
authenticity
> > > > > of all links contained within the message prior to copying
and
> > > > > pasting the address to a Web browser.
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > ----
> > > > >
> > > > > John,
> > > > >
> > > > > I am not an expert in gsl installs and I can't replicate
this
> > > > > problem on our servers.
> > > > > Looks like some gsl users have similar errors:
> > > > > Caution-Caution-Caution-
> > > > > Caution-Caution-https://github.com/RobinHankin/gsl/issues/
> > > > > 4 According to this thread the problem can be in GSL
version.
> > > > > Pleas take a look at the comments by user 'RobinHankin'
about
> > > > > the multiple or old versons.
> > > > >
> > > > > Tatiana
> > > > >
> > > > > On Wed Aug 07 07:28:44 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > Tatiana -
> > > > > >
> > > > > > This morning I tried a couple of tests to see if I could
load
> > > > > > the gsl R package. First, I opened a terminal and just ran
> > > > > > the
> > > > > > install command in R as before but selected a different
CRAN
> > > > > > site for downloading the package. The result was the same
as
> > > > > > the error I reported in my email below.
> > > > > >
> > > > > > Then I opened a new terminal and set the env variables you
> > > > > > described in an earlier email for bash. I then attempted
to
> > > > > > install the gsl R package, but this time the dialog was
> > > > > > different.
> > > > > > Apparently it got past the issue which prevented execution
> > > > > > before, and now it can't compile the package. See the
> > > > > > following
> > > > > > dialog:
> > > > > >
> > > > > > trying URL
> > > > > > 'Caution-
> > > > > > Caution-
> > > > > > Caution-
> > > > > > Caution-
> > > > > > Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > > > > 1
> > > > > > -
> > > > > > 6.tar.gz'
> > > > > >   Content type 'application/octet-stream' length 189794
bytes
> > > > > > (185
> > > > > > KB) ==================================================
> > > > > > downloaded 185 KB
> > > > > >
> > > > > > * installing *source* package 'gsl' ...
> > > > > > ** package 'gsl' successfully unpacked and MD5 sums
checked
> > > > > > ** using staged installation
> > > > > >      checking for gsl-config... /usr/bin/gsl-config
checking
> > > > > > if
> > > > > > GSL version
> > > > > > > = 2.1... checking for gcc... gcc checking whether the C
> > > > > > > compiler
> > > > > > works... yes checking for C compiler default output file
> > > > > > name...
> > > > > > a.out
> > > > > > checking for suffix of executables...
> > > > > >     checking whether we are cross compiling... no checking
> > > > > > for
> > > > > > suffix  of object files... o checking whether we are using
> > > > > > the
> > > > > > GNU C compiler...
> > > > > >    yes checking whether gcc accepts -g... yes checking for
> > > > > > gcc
> > > > > > option to accept ISO C89... none needed yes
> > > > > > configure: creating ./config.status
> > > > > > config.status: creating src/Makevars
> > > > > > ** libs
> > > > > >   gcc -std=gnu99 -I"/home/jraby/R/R-3.6.1/include"
-DNDEBUG
> > > > > >     -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > > > > -c
> > > > > > airy.c -o airy.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > > -DNDEBUG
> > > > > >      -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > > > > -c  bessel.c  -o bessel.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > > -O2
> > > > > >   -c clausen.c -o clausen.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-
> > > > > > 3.6.1/include"
> > > > > > -DNDEBUG
> > > > > >      -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > > > > -c  coulomb.c -o coulomb.o gcc -std=gnu99
-I"/home/jraby/R/R-
> > > > > > 3.6.1/include"
> > > > > > -DNDEBUG
> > > > > >      -I/usr/include -I.  -I/usr/local/include  -fpic  -g
-O2
> > > > > > -c  coupling.c -o coupling.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > > -O2
> > > > > >   -c dawson.c -o dawson.o gcc -std=gnu99
-I"/home/jraby/R/R-
> > > > > > 3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > > -O2
> > > > > >   -c debye.c -o debye.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > > -O2
> > > > > >   -c dilog.c -o dilog.o gcc -std=gnu99
> > > > > > -I"/home/jraby/R/R-3.6.1/include"
> > > > > >  -DNDEBUG -I/usr/include -I.  -I/usr/local/include  -fpic
-g
> > > > > > -O2
> > > > > > -c ellint.c -o ellint.o
> > > > > > ellint.c: In function 'ellint_D_e':
> > > > > > ellint.c:82:5: warning: passing argument 4 of
> > > > > > 'gsl_sf_ellint_D_e'
> > > > > > makes integer from pointer without a cast [enabled by
> > > > > > default]
> > > > > >   status[i] = gsl_sf_ellint_D_e(phi[i], k[i],
sf_mode[*mode],
> > > > > > &result) ;
> > > > > >   ^
> > > > > > In file included from ellint.c:1:0:
> > > > > >  /usr/include/gsl/gsl_sf_ellint.h:84:5: note: expected
> > > > > > 'gsl_mode_t'
> > > > > > but
> > > > > > argument is of type 'struct gsl_sf_result *'
> > > > > >    int gsl_sf_ellint_D_e(double phi, double k, double n,
> > > > > > gsl_mode_t mode, gsl_sf_result * result);
> > > > > >   ^
> > > > > >    ellint.c:82:5: error: too few arguments to function
> > > > > > 'gsl_sf_ellint_D_e'
> > > > > >   status[i] = gsl_sf_ellint_D_e(phi[i], k[i],
sf_mode[*mode],
> > > > > > &result) ;
> > > > > >   ^
> > > > > > In file included from ellint.c:1:0:
> > > > > >      /usr/include/gsl/gsl_sf_ellint.h:84:5: note: declared
> > > > > > here
> > > > > > int  gsl_sf_ellint_D_e(double phi, double k, double n,
> > > > > > gsl_mode_t mode, gsl_sf_result * result);
> > > > > >   ^
> > > > > > make: *** [ellint.o] Error 1
> > > > > > ERROR: compilation failed for package 'gsl'
> > > > > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > > > > >
> > > > > > The downloaded source packages are in
> > > > > >         '/home/jraby/tmp/RtmpO0i7Ze/downloaded_packages'
> > > > > > Updating HTML index of packages in '.Library'
> > > > > > Making 'packages.html' ... done Warning message:
> > > > > > In install.packages("gsl") :
> > > > > >   installation of package 'gsl' had non-zero exit status
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > > ________________________________________
> > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > Sent: Tuesday, August 06, 2019 4:39 PM
> > > > > > To: met_help at ucar.edu
> > > > > >      Subject: RE: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > Installing METviewer (UNCLASSIFIED)
> > > > > >
> > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > >
> > > > > > Tatiana -
> > > > > >
> > > > > > My sysadm installed gsl-devel using the command you
provided.
> > > > > > I just tried to load the R package, but it has the same
> > > > > > error:
> > > > > >
> > > > > > > install.packages('gsl')
> > > > > > --- Please select a CRAN mirror for use in this session
--- I
> > > > > > selected
> > > > > > 63 (USA MI)
> > > > > >
> > > > > > trying URL
> > > > > > 'Caution-
> > > > > > Caution-
> > > > > > Caution-
> > > > > > Caution-
> > > > > > Caution-
https://repo.miserver.it.umich.edu/cran/src/contrib/gsl_2.
> > > > > > 1
> > > > > > -
> > > > > > 6.tar.gz'
> > > > > >   Content type 'application/octet-stream' length 189794
bytes
> > > > > > (185
> > > > > > KB) ==================================================
> > > > > > downloaded 185 KB
> > > > > >
> > > > > > * installing *source* package 'gsl' ...
> > > > > > ** package 'gsl' successfully unpacked and MD5 sums
checked
> > > > > > ** using staged installation
> > > > > >      ERROR: 'configure' exists but is not executable --
see
> > > > > > the
> > > > > > 'R Installation and Administration Manual'
> > > > > > * removing '/home/jraby/R/R-3.6.1/library/gsl'
> > > > > >
> > > > > > The downloaded source packages are in
> > > > > >         '/tmp/RtmpFotJTN/downloaded_packages'
> > > > > > Updating HTML index of packages in '.Library'
> > > > > > Making 'packages.html' ... done Warning message:
> > > > > > In install.packages("gsl") :
> > > > > >   installation of package 'gsl' had non-zero exit status
> > > > > >
> > > > > > R/
> > > > > > John
> > > > > >
> > > > > >
> > > > > >
> > > > > > -----Original Message-----
> > > > > >  From: Tatiana Burek via RT
> > > > > > [Caution-Caution-Caution-Caution-Caution-
mailto:met_help at ucar.edu]
> > > > > > Sent: Tuesday, August 6, 2019 3:17 PM
> > > > > >     To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > <john.w.raby2.civ at mail.mil>
> > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > Installing METviewer
> > > > > >
> > > > > > All active links contained in this email were disabled.
> > > > > > Please verify the identity of the sender, and confirm the
> > > > > > authenticity of all links contained within the message
prior
> > > > > > to copying and pasting the address to a Web browser.
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > ----
> > > > > >
> > > > > > I checked R gsl dependencies and it does require gsl-devel
To
> > > > > > install gsl-devel you (or your sys admin)  need to run yum
> > > > > > install gsl-devel
> > > > > >
> > > > > > Tatiana
> > > > > >
> > > > > > On Tue Aug 06 15:00:25 2019, john.w.raby2.civ at mail.mil
wrote:
> > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > >
> > > > > > > So, gsl itself is not required in order to have a
> > > > > > > successful
> > > > > > > install of the R package gsl, correct?
> > > > > > >
> > > > > > > R/
> > > > > > > John
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > >    From: Tatiana Burek via RT
> > > > > > > [Caution-Caution-Caution-Caution-Caution-
> > > > > > > Caution-mailto:met_help at uca
> > > > > > > r.edu]
> > > > > > > Sent: Tuesday, August 6, 2019 2:50 PM
> > > > > > >      To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > >      Subject: [Non-DoD Source] [rt.rap.ucar.edu #91137]
> > > > > > > Installing METviewer
> > > > > > >
> > > > > > > gsl and "R package gsl" are different libraries and are
> > > > > > > needed to be installed separately.
> > > > > > > I'm not sure that  there is a dependency between of them
> > > > > > > but
> > > > > > > if there is than R gsl would depend on the standard gsl.
> > > > > > >
> > > > > > > Tatiana
> > > > > > >
> > > > > > > On Tue Aug 06 14:42:39 2019, john.w.raby2.civ at mail.mil
> > > > > > > wrote:
> > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > >
> > > > > > > > Tatiana -
> > > > > > > >
> > > > > > > > Thanks for your guidance on resolving the issues. I
will
> > > > > > > > consult with my sysadm and get back to you soon.
> > > > > > > >
> > > > > > > > Regards the gsl package, I read about the eclv plot
and I
> > > > > > > > don't have an interest at the present time. Was the
> > > > > > > > loading of the gsl package supposed to do an install
of
> > > > > > > > the gsl? I have installed gsl as part of the
provisioning
> > > > > > > > required prior to installing MET
> > > > > > > > V5.2 on the HPC. If I was able to do that on my
> > > > > > > > workstation and was successful, would that alleviate
the
> > > > > > > > problem and allow the package to be installed?
> > > > > > > >
> > > > > > > > R/
> > > > > > > > John
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > >     From: Tatiana Burek via RT
> > > > > > > > [Caution-Caution-Caution-Caution-Caution-
> > > > > > > > Caution-mailto:met_help at u
> > > > > > > > car.edu]
> > > > > > > > Sent: Tuesday, August 6, 2019 2:13 PM
> > > > > > > >      To: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > <john.w.raby2.civ at mail.mil>
> > > > > > > >       Subject: [Non-DoD Source] [rt.rap.ucar.edu
#91137]
> > > > > > > > Installing METviewer
> > > > > > > >
> > > > > > > > John,
> > > > > > > >
> > > > > > > > By default, R uses the /tmp directory to install
> > > > > > > > packages.
> > > > > > > > The
> > > > > > > >   /tmp directory is often marked as "noexec". This
means
> > > > > > > > that no file under /tmp can ever be executed.
> > > > > > > >   To solve this problem you need  to set the TMPDIR
> > > > > > > > environment
> > > > > > > > variable:
> > > > > > > > For csh shell:
> > > > > > > > mkdir ~/tmp
> > > > > > > > setenv TMPDIR ~/tmp
> > > > > > > >
> > > > > > > > for bash:
> > > > > > > > mkdir ~/tmp
> > > > > > > > export TMPDIR=~/tmp
> > > > > > > >
> > > > > > > > gsl package is only needed for Eclv plot. If you are
not
> > > > > > > > planning to create these plots you don't need to
install
> > > > > > > > this package.
> > > > > > > >
> > > > > > > > Tatiana
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > On Mon Aug 05 15:21:17 2019, john.w.raby2.civ at mail.mil
> > > > > > > > wrote:
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > Today I was able to resume the loading of the R
> > > > > > > > > packages
> > > > > > > > > you specified in an earlier email. There were issues
> > > > > > > > > encountered when loading 'gsl"
> > > > > > > > > and 'verification'. I'm not sure where to start
> > > > > > > > > debugging the issues.
> > > > > > > > > I captured the screen dialog so you can see more
> > > > > > > > > specific info about them. See attached text file.
> > > > > > > > >
> > > > > > > > > The R packages which appear to have loaded
successfully
> > > > > > > > > are:
> > > > > > > > > 'boot', 'plotrix', and 'data.table'
> > > > > > > > >
> > > > > > > > > What do you recommend for troubleshooting these
issues?
> > > > > > > > >
> > > > > > > > > At this point, I believe that you have all the info
you
> > > > > > > > > requested which was provided in earlier emails.
> > > > > > > > >
> > > > > > > > > Let me know if you need additional info to proceed.
> > > > > > > > >
> > > > > > > > > Thanks.
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > >  John
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > ________________________________________
> > > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > Sent: Wednesday, July 31, 2019 11:45 AM
> > > > > > > > > To: met_help at ucar.edu
> > > > > > > > >        Subject: RE: [Non-DoD Source]
[rt.rap.ucar.edu
> > > > > > > > > #91137] Installing METviewer (UNCLASSIFIED)
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > I'm sorry about the delay in getting back to you
with
> > > > > > > > > an
> > > > > > > > > update.
> > > > > > > > >
> > > > > > > > > My workstation is fully operational now. I have not
had
> > > > > > > > > a chance to load the remaining R packages.
> > > > > > > > >
> > > > > > > > > In answer to the questions you asked me:
> > > > > > > > >
> > > > > > > > > - database host and port. By default it is
> > > > > > > > > localhost:3306.
> > > > > > > > > Will this apply to your server?
> > > > > > > > >    YES
> > > > > > > > >   - database user name and password. This is for the
> > > > > > > > > user that would insert and retrieve date to/from
> > > > > > > > > database
> > > > > > > > >    ruser / whitesands
> > > > > > > > > - the path to Tomcat's webapp directory
> > > > > > > > >    /opt/tomcat7/webapp
> > > > > > > > > - the path where the R executables will be
installed.
> > > > > > > > >    /home/jraby/R/R-3.6.1/bin/
> > > > > > > > >   - path to Java. By default it is java. Will this
> > > > > > > > > apply
> > > > > > > > > to your server?
> > > > > > > > >    /usr/java/jdk1.8.0_212-amd64/jre/bin/java
> > > > > > > > > - path where the METViewer executables should be
> > > > > > > > > located.
> > > > > > > > >    /home/jraby/METViewer
> > > > > > > > >
> > > > > > > > > Let me know if you need other details.
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > Sent: Thursday, July 25, 2019 8:35 AM
> > > > > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > > > > >        Subject: RE: [Non-DoD Source]
[rt.rap.ucar.edu
> > > > > > > > > #91137] Installing METviewer
> > > > > > > > > (UNCLASSIFIED)
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > FYI, the issue with my workstation has been resolved
> > > > > > > > > and
> > > > > > > > > I should receive it back in my office today. I will
> > > > > > > > > load
> > > > > > > > > the remaining R packages which you listed in your
> > > > > > > > > earlier email.
> > > > > > > > > I'll have my system admin send you the info you
> > > > > > > > > requested last week soon.
> > > > > > > > >
> > > > > > > > > R/
> > > > > > > > > John
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Raby, John W CIV USARMY CCDC ARL (USA)
> > > > > > > > > Sent: Friday, July 19, 2019 3:23 PM
> > > > > > > > > To: 'met_help at ucar.edu' <met_help at ucar.edu>
> > > > > > > > >        Subject: RE: [Non-DoD Source]
[rt.rap.ucar.edu
> > > > > > > > > #91137] Installing METviewer
> > > > > > > > > (UNCLASSIFIED)
> > > > > > > > >
> > > > > > > > > CLASSIFICATION: UNCLASSIFIED
> > > > > > > > >
> > > > > > > > > Tatiana -
> > > > > > > > >
> > > > > > > > > My system admin was able to change the permissions
on
> > > > > > > > > the library and all other directories in the install
> > > > > > > > > directory and I was able to load the first R package
> > > > > > > > > successfully
> > > > > > > > > at:
> > > > > > > > > /home/jraby/R/R-3.6.1/library
> > > > > > > > >
> > > > > > > > > My system admin was working on obtaining the rest of
> > > > > > > > > the
> > > > > > > > > info you requested.
> > > > > > > > > Unfortunately, the workstation would not complete a
> > > > > > > > > reboot and cannot be accessed now. He is looking
into
> > > > > > > > > resolving that problem now. Not sure whether the
> > > > > > > > > problem
> > > > > > > > > is connected with the installation of the new apps
> > > > > > > > > associated with getting the system provisioned for
> > > > > > > > > METViewer, but it is s