[Met_help] [rt.rap.ucar.edu #73301] History for Necessary modules on yellowstone
John Halley Gotway via RT
met_help at ucar.edu
Thu Oct 1 15:34:01 MDT 2015
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Hi,
I am a scientist in MMM/CGD and would like to use met for verifying my
stochastic schemes in wrf ensembles as well as for some collaborative work
with Isidora Jankov and Jeff Beck at NOAA.
I compute on yellowstone. I copied the yellowstone built of met5.0
/glade/p/ral/jnt/MET/MET_releases/met-5.0/scripts/
to my home directory and am running "make test", which fails with
CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh
/glade/p/ral/jnt/MET/MET_releases/met-5.0/missing --run aclocal-1.11 -I m4
aclocal-1.11: couldn't open directory `m4': No such file or directory
make: *** [aclocal.m4] Error 1
I also tried to run test_all.sh, which fails as well.
I think I do not have all the necessary modules loaded.
Do you have a list of the necessary modules on yellowstone?
If easier, I'd be happy to come by on person :-)
This is definitely a 'new user doesn't have a clue' rather than a
sophisticated problem.
Thanks, Judith
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: Necessary modules on yellowstone
From: John Halley Gotway
Time: Fri Sep 04 10:20:43 2015
Hello Judith,
Is there a reason you want to copy the met-5.0 code to your home
directory? You're welcome to just run the build from
/glade/p/ral/jnt/MET/MET_releases/met-5.0.
Please try running one of the tools on the command line without any
arguments:
/glade/p/ral/jnt/MET/MET_releases/met-5.0/bin/point_stat
If it prints the usage statement, that's a good sign. If you get some
error about not being able to link to some library, that means we need
to
work on your environment. Please send me any errors you get.
If you decide that you'd like to actually build MET in your own area,
I'd
suggest recompiling rather than just copying. If you just copy it,
it'll
continue to read static data files (like default config files,
colortables,
and GRIB tables) from the original location. If you actually
recompile,
it'll read those from your new location... and that'll cause fewer
headaches and confusion in the long run.
Here are the steps you'd need to recompile:
cd "new location for met-5.0"
# Unpack met-5.0 source code
tar -xvzf /glade/p/ral/jnt/MET/MET_releases/met-5.0.20140905.tar.gz
cd met-5.0
# Get and apply patches
wget
http://www.dtcenter.org/met/users/support/known_issues/METv5.0/patches/met-
5.0_patches_20150205.tar.gz
tar -xvzf met-5.0.20140905.tar.gz
# Configure MET
setenv MET_NETCDF /glade/p/ral/jnt/tools/netcdf-3.6.3
setenv MET_BUFRLIB /glade/p/ral/jnt/tools/bufrlib-10.1.0
setenv MET_GSL /glade/p/ral/jnt/tools/gsl-1.15
setenv MET_GRIB2CINC /glade/p/ral/jnt/tools/g2clib-1.4.0
setenv MET_GRIB2CLIB /glade/p/ral/jnt/tools/g2clib-1.4.0
./configure --prefix=`pwd` --enable-grib2 --enable-tc_utils
# Compile MET
make install >& make_install.log &
tail -f make_install.log
# type CNTRL-C to exit tail
# Run test scripts
make test >& make_test.log&
tail -f make_test.log
# type CNTRL-C to exit tail
Please let me know if you run into more issues.
Thanks,
John Halley Gotway
met_help at ucar.edu
On Thu, Sep 3, 2015 at 3:17 PM, Judith Berner via RT
<met_help at ucar.edu>
wrote:
>
> Thu Sep 03 15:17:32 2015: Request 73301 was acted upon.
> Transaction: Ticket created by berner at ucar.edu
> Queue: met_help
> Subject: Necessary modules on yellowstone
> Owner: Nobody
> Requestors: berner at ucar.edu
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73301 >
>
>
> Hi,
>
> I am a scientist in MMM/CGD and would like to use met for verifying
my
> stochastic schemes in wrf ensembles as well as for some
collaborative work
> with Isidora Jankov and Jeff Beck at NOAA.
>
> I compute on yellowstone. I copied the yellowstone built of met5.0
>
> /glade/p/ral/jnt/MET/MET_releases/met-5.0/scripts/
>
> to my home directory and am running "make test", which fails with
>
> CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh
> /glade/p/ral/jnt/MET/MET_releases/met-5.0/missing --run aclocal-1.11
-I m4
> aclocal-1.11: couldn't open directory `m4': No such file or
directory
>
> make: *** [aclocal.m4] Error 1
>
> I also tried to run test_all.sh, which fails as well.
> I think I do not have all the necessary modules loaded.
>
> Do you have a list of the necessary modules on yellowstone?
> If easier, I'd be happy to come by on person :-)
>
> This is definitely a 'new user doesn't have a clue' rather than a
> sophisticated problem.
>
> Thanks, Judith
>
>
------------------------------------------------
Subject: Necessary modules on yellowstone
From: Judith Berner
Time: Fri Sep 04 11:55:25 2015
Dear John,
thank you for your quick reply.
I am glad I gave you the 'absolute beginner' line.
I will use built of met instead of building mine (duh).
executing
/glade/p/ral/jnt/MET/MET_releases/met-5.0/bin/point_stat
gives me the prints usage statement (yay).
Next I copied the test_point_stat.sh script and adjusted it to use
the root path
/glade/p/ral/jnt/MET/MET_releases/met-5.0/
for the input files.
I was able to execute this script and get output.
Thanks very much - now I can actually play with met.
I have a feeling you will hear from me soon again!
Thanks, Judith
On Fri, Sep 4, 2015 at 10:20 AM, John Halley Gotway via RT <
met_help at ucar.edu> wrote:
> Hello Judith,
>
> Is there a reason you want to copy the met-5.0 code to your home
> directory? You're welcome to just run the build from
> /glade/p/ral/jnt/MET/MET_releases/met-5.0.
>
> Please try running one of the tools on the command line without any
> arguments:
> /glade/p/ral/jnt/MET/MET_releases/met-5.0/bin/point_stat
>
> If it prints the usage statement, that's a good sign. If you get
some
> error about not being able to link to some library, that means we
need to
> work on your environment. Please send me any errors you get.
>
> If you decide that you'd like to actually build MET in your own
area, I'd
> suggest recompiling rather than just copying. If you just copy it,
it'll
> continue to read static data files (like default config files,
colortables,
> and GRIB tables) from the original location. If you actually
recompile,
> it'll read those from your new location... and that'll cause fewer
> headaches and confusion in the long run.
>
> Here are the steps you'd need to recompile:
> cd "new location for met-5.0"
>
> # Unpack met-5.0 source code
> tar -xvzf /glade/p/ral/jnt/MET/MET_releases/met-
5.0.20140905.tar.gz
> cd met-5.0
>
> # Get and apply patches
> wget
>
>
http://www.dtcenter.org/met/users/support/known_issues/METv5.0/patches/met-
5.0_patches_20150205.tar.gz
> tar -xvzf met-5.0.20140905.tar.gz
>
> # Configure MET
> setenv MET_NETCDF /glade/p/ral/jnt/tools/netcdf-3.6.3
> setenv MET_BUFRLIB /glade/p/ral/jnt/tools/bufrlib-10.1.0
> setenv MET_GSL /glade/p/ral/jnt/tools/gsl-1.15
> setenv MET_GRIB2CINC /glade/p/ral/jnt/tools/g2clib-1.4.0
> setenv MET_GRIB2CLIB /glade/p/ral/jnt/tools/g2clib-1.4.0
> ./configure --prefix=`pwd` --enable-grib2 --enable-tc_utils
>
> # Compile MET
> make install >& make_install.log &
> tail -f make_install.log
> # type CNTRL-C to exit tail
>
> # Run test scripts
> make test >& make_test.log&
> tail -f make_test.log
> # type CNTRL-C to exit tail
>
> Please let me know if you run into more issues.
>
> Thanks,
> John Halley Gotway
> met_help at ucar.edu
>
>
>
>
>
>
>
> On Thu, Sep 3, 2015 at 3:17 PM, Judith Berner via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > Thu Sep 03 15:17:32 2015: Request 73301 was acted upon.
> > Transaction: Ticket created by berner at ucar.edu
> > Queue: met_help
> > Subject: Necessary modules on yellowstone
> > Owner: Nobody
> > Requestors: berner at ucar.edu
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73301 >
> >
> >
> > Hi,
> >
> > I am a scientist in MMM/CGD and would like to use met for
verifying my
> > stochastic schemes in wrf ensembles as well as for some
collaborative
> work
> > with Isidora Jankov and Jeff Beck at NOAA.
> >
> > I compute on yellowstone. I copied the yellowstone built of met5.0
> >
> > /glade/p/ral/jnt/MET/MET_releases/met-5.0/scripts/
> >
> > to my home directory and am running "make test", which fails with
> >
> > CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh
> > /glade/p/ral/jnt/MET/MET_releases/met-5.0/missing --run aclocal-
1.11 -I
> m4
> > aclocal-1.11: couldn't open directory `m4': No such file or
directory
> >
> > make: *** [aclocal.m4] Error 1
> >
> > I also tried to run test_all.sh, which fails as well.
> > I think I do not have all the necessary modules loaded.
> >
> > Do you have a list of the necessary modules on yellowstone?
> > If easier, I'd be happy to come by on person :-)
> >
> > This is definitely a 'new user doesn't have a clue' rather than a
> > sophisticated problem.
> >
> > Thanks, Judith
> >
> >
>
>
------------------------------------------------
Subject: Necessary modules on yellowstone
From: John Halley Gotway
Time: Fri Sep 04 12:13:52 2015
Judith,
Happy to help. I'll resolve this ticket now. If more questions or
issues
arise in your use of MET, please send a new email to met_help at ucar.edu
rather than replying to this one. That'll create a new support ticket
in
our system.
Thanks,
John
On Fri, Sep 4, 2015 at 11:55 AM, Judith Berner via RT
<met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73301 >
>
> Dear John,
>
> thank you for your quick reply.
> I am glad I gave you the 'absolute beginner' line.
> I will use built of met instead of building mine (duh).
>
> executing
> /glade/p/ral/jnt/MET/MET_releases/met-5.0/bin/point_stat
> gives me the prints usage statement (yay).
>
> Next I copied the test_point_stat.sh script and adjusted it to use
> the root path
> /glade/p/ral/jnt/MET/MET_releases/met-5.0/
> for the input files.
>
> I was able to execute this script and get output.
>
> Thanks very much - now I can actually play with met.
> I have a feeling you will hear from me soon again!
>
> Thanks, Judith
>
> On Fri, Sep 4, 2015 at 10:20 AM, John Halley Gotway via RT <
> met_help at ucar.edu> wrote:
>
> > Hello Judith,
> >
> > Is there a reason you want to copy the met-5.0 code to your home
> > directory? You're welcome to just run the build from
> > /glade/p/ral/jnt/MET/MET_releases/met-5.0.
> >
> > Please try running one of the tools on the command line without
any
> > arguments:
> > /glade/p/ral/jnt/MET/MET_releases/met-5.0/bin/point_stat
> >
> > If it prints the usage statement, that's a good sign. If you get
some
> > error about not being able to link to some library, that means we
need to
> > work on your environment. Please send me any errors you get.
> >
> > If you decide that you'd like to actually build MET in your own
area, I'd
> > suggest recompiling rather than just copying. If you just copy
it, it'll
> > continue to read static data files (like default config files,
> colortables,
> > and GRIB tables) from the original location. If you actually
recompile,
> > it'll read those from your new location... and that'll cause fewer
> > headaches and confusion in the long run.
> >
> > Here are the steps you'd need to recompile:
> > cd "new location for met-5.0"
> >
> > # Unpack met-5.0 source code
> > tar -xvzf /glade/p/ral/jnt/MET/MET_releases/met-
5.0.20140905.tar.gz
> > cd met-5.0
> >
> > # Get and apply patches
> > wget
> >
> >
>
http://www.dtcenter.org/met/users/support/known_issues/METv5.0/patches/met-
5.0_patches_20150205.tar.gz
> > tar -xvzf met-5.0.20140905.tar.gz
> >
> > # Configure MET
> > setenv MET_NETCDF /glade/p/ral/jnt/tools/netcdf-3.6.3
> > setenv MET_BUFRLIB /glade/p/ral/jnt/tools/bufrlib-10.1.0
> > setenv MET_GSL /glade/p/ral/jnt/tools/gsl-1.15
> > setenv MET_GRIB2CINC /glade/p/ral/jnt/tools/g2clib-1.4.0
> > setenv MET_GRIB2CLIB /glade/p/ral/jnt/tools/g2clib-1.4.0
> > ./configure --prefix=`pwd` --enable-grib2 --enable-tc_utils
> >
> > # Compile MET
> > make install >& make_install.log &
> > tail -f make_install.log
> > # type CNTRL-C to exit tail
> >
> > # Run test scripts
> > make test >& make_test.log&
> > tail -f make_test.log
> > # type CNTRL-C to exit tail
> >
> > Please let me know if you run into more issues.
> >
> > Thanks,
> > John Halley Gotway
> > met_help at ucar.edu
> >
> >
> >
> >
> >
> >
> >
> > On Thu, Sep 3, 2015 at 3:17 PM, Judith Berner via RT
<met_help at ucar.edu>
> > wrote:
> >
> > >
> > > Thu Sep 03 15:17:32 2015: Request 73301 was acted upon.
> > > Transaction: Ticket created by berner at ucar.edu
> > > Queue: met_help
> > > Subject: Necessary modules on yellowstone
> > > Owner: Nobody
> > > Requestors: berner at ucar.edu
> > > Status: new
> > > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73301
> >
> > >
> > >
> > > Hi,
> > >
> > > I am a scientist in MMM/CGD and would like to use met for
verifying my
> > > stochastic schemes in wrf ensembles as well as for some
collaborative
> > work
> > > with Isidora Jankov and Jeff Beck at NOAA.
> > >
> > > I compute on yellowstone. I copied the yellowstone built of
met5.0
> > >
> > > /glade/p/ral/jnt/MET/MET_releases/met-5.0/scripts/
> > >
> > > to my home directory and am running "make test", which fails
with
> > >
> > > CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh
> > > /glade/p/ral/jnt/MET/MET_releases/met-5.0/missing --run aclocal-
1.11 -I
> > m4
> > > aclocal-1.11: couldn't open directory `m4': No such file or
directory
> > >
> > > make: *** [aclocal.m4] Error 1
> > >
> > > I also tried to run test_all.sh, which fails as well.
> > > I think I do not have all the necessary modules loaded.
> > >
> > > Do you have a list of the necessary modules on yellowstone?
> > > If easier, I'd be happy to come by on person :-)
> > >
> > > This is definitely a 'new user doesn't have a clue' rather than
a
> > > sophisticated problem.
> > >
> > > Thanks, Judith
> > >
> > >
> >
> >
>
>
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