[Met_help] [rt.rap.ucar.edu #73269] History for fail to compile MET5.0
John Halley Gotway via RT
met_help at ucar.edu
Fri Oct 2 10:30:22 MDT 2015
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Hi,
I've downloaded the MET 5 release but I'm having trouble compiling it. I
followed all of your instructions but fail to see where the error's origin
might be.
I attach the config and the make_install log file. I also checked all the
met_help archives in an attempt to seek any help but with no luck.
Thanks in advance
Susana
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: fail to compile MET5.0
From: Julie Prestopnik
Time: Wed Sep 02 10:12:50 2015
Hi Susana. I'm sorry that you're having trouble compiling MET. Thank
you
for attaching your config and make_install log files and for checking
the
met_help archives.
I see that you are using gsl-1.5. Unfortunately, that older version
of the
GSL software does not come with the wavelet code that MET needs.
Please
download a more recent version of GSL:
http://www.gnu.org/software/gsl/
and compile that using the instructions here:
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
Then, reconfigure and recompile MET. Please let us know if you
encounter
any other issues or if that works for you.
Thanks,
Julie
On Wed, Sep 2, 2015 at 3:25 AM, Susana Cardoso Pereira via RT <
met_help at ucar.edu> wrote:
>
> Wed Sep 02 03:25:39 2015: Request 73269 was acted upon.
> Transaction: Ticket created by susana.cardoso at ua.pt
> Queue: met_help
> Subject: fail to compile MET5.0
> Owner: Nobody
> Requestors: susana.cardoso at ua.pt
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
>
>
> Hi,
> I've downloaded the MET 5 release but I'm having trouble compiling
it. I
> followed all of your instructions but fail to see where the error's
origin
> might be.
> I attach the config and the make_install log file. I also checked
all the
> met_help archives in an attempt to seek any help but with no luck.
>
> Thanks in advance
>
> Susana
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
Subject: fail to compile MET5.0
From: Julie Prestopnik
Time: Tue Sep 08 11:05:09 2015
Hi Susana. I just wanted to follow up. Were you able to compile a
more
recent version of GSL and then successfully compile MET afterward?
Thanks,
Julie
On Wed, Sep 2, 2015 at 10:12 AM, Julie Prestopnik <jpresto at ucar.edu>
wrote:
> Hi Susana. I'm sorry that you're having trouble compiling MET.
Thank you
> for attaching your config and make_install log files and for
checking the
> met_help archives.
>
> I see that you are using gsl-1.5. Unfortunately, that older version
of
> the GSL software does not come with the wavelet code that MET needs.
> Please download a more recent version of GSL:
>
> http://www.gnu.org/software/gsl/
>
> and compile that using the instructions here:
>
>
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
>
> Then, reconfigure and recompile MET. Please let us know if you
encounter
> any other issues or if that works for you.
>
> Thanks,
> Julie
>
>
> On Wed, Sep 2, 2015 at 3:25 AM, Susana Cardoso Pereira via RT <
> met_help at ucar.edu> wrote:
>
>>
>> Wed Sep 02 03:25:39 2015: Request 73269 was acted upon.
>> Transaction: Ticket created by susana.cardoso at ua.pt
>> Queue: met_help
>> Subject: fail to compile MET5.0
>> Owner: Nobody
>> Requestors: susana.cardoso at ua.pt
>> Status: new
>> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
>>
>>
>> Hi,
>> I've downloaded the MET 5 release but I'm having trouble compiling
it. I
>> followed all of your instructions but fail to see where the error's
origin
>> might be.
>> I attach the config and the make_install log file. I also checked
all the
>> met_help archives in an attempt to seek any help but with no luck.
>>
>> Thanks in advance
>>
>> Susana
>>
>>
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
Subject: fail to compile MET5.0
From: Susana Cardoso Pereira
Time: Wed Sep 09 02:06:43 2015
Hi Julia,
Thanks for the support. It was great. I didn't say anything because
I'm
trying to compile the gsl but I'm finding some difficulties. I'm not
sure
if there is an error or only a bug in running the tests.
Thanks
Susana
On Tue, Sep 8, 2015 at 6:05 PM, Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:
> Hi Susana. I just wanted to follow up. Were you able to compile a
more
> recent version of GSL and then successfully compile MET afterward?
>
> Thanks,
> Julie
>
> On Wed, Sep 2, 2015 at 10:12 AM, Julie Prestopnik <jpresto at ucar.edu>
> wrote:
>
> > Hi Susana. I'm sorry that you're having trouble compiling MET.
Thank
> you
> > for attaching your config and make_install log files and for
checking the
> > met_help archives.
> >
> > I see that you are using gsl-1.5. Unfortunately, that older
version of
> > the GSL software does not come with the wavelet code that MET
needs.
> > Please download a more recent version of GSL:
> >
> > http://www.gnu.org/software/gsl/
> >
> > and compile that using the instructions here:
> >
> >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> >
> > Then, reconfigure and recompile MET. Please let us know if you
encounter
> > any other issues or if that works for you.
> >
> > Thanks,
> > Julie
> >
> >
> > On Wed, Sep 2, 2015 at 3:25 AM, Susana Cardoso Pereira via RT <
> > met_help at ucar.edu> wrote:
> >
> >>
> >> Wed Sep 02 03:25:39 2015: Request 73269 was acted upon.
> >> Transaction: Ticket created by susana.cardoso at ua.pt
> >> Queue: met_help
> >> Subject: fail to compile MET5.0
> >> Owner: Nobody
> >> Requestors: susana.cardoso at ua.pt
> >> Status: new
> >> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> >>
> >>
> >> Hi,
> >> I've downloaded the MET 5 release but I'm having trouble
compiling it. I
> >> followed all of your instructions but fail to see where the
error's
> origin
> >> might be.
> >> I attach the config and the make_install log file. I also checked
all
> the
> >> met_help archives in an attempt to seek any help but with no
luck.
> >>
> >> Thanks in advance
> >>
> >> Susana
> >>
> >>
> >
> >
> > --
> > Julie Prestopnik
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Phone: 303.497.8399
> > Email: jpresto at ucar.edu
> >
>
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
>
------------------------------------------------
Subject: fail to compile MET5.0
From: Julie Prestopnik
Time: Wed Sep 09 11:02:08 2015
Hi Susana. I'm sorry that you are encountering difficulties with
compiling
GSL. In the link I sent to you previously:
http://www.gnu.org/software/gsl/
I see there is an email address for help and a user's mailing list:
help-gsl at gnu.org
http://mail.gnu.org/mailman/listinfo/help-gsl
I don't know what newer version you got, but it looks like we are
using
gsl-1.13 here.
Please let us know if we can help.
Julie
On Wed, Sep 9, 2015 at 2:06 AM, Susana Cardoso Pereira via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
>
> Hi Julia,
>
> Thanks for the support. It was great. I didn't say anything because
I'm
> trying to compile the gsl but I'm finding some difficulties. I'm not
sure
> if there is an error or only a bug in running the tests.
>
>
> Thanks
> Susana
>
> On Tue, Sep 8, 2015 at 6:05 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> >
> wrote:
>
> > Hi Susana. I just wanted to follow up. Were you able to compile
a more
> > recent version of GSL and then successfully compile MET afterward?
> >
> > Thanks,
> > Julie
> >
> > On Wed, Sep 2, 2015 at 10:12 AM, Julie Prestopnik
<jpresto at ucar.edu>
> > wrote:
> >
> > > Hi Susana. I'm sorry that you're having trouble compiling MET.
Thank
> > you
> > > for attaching your config and make_install log files and for
checking
> the
> > > met_help archives.
> > >
> > > I see that you are using gsl-1.5. Unfortunately, that older
version of
> > > the GSL software does not come with the wavelet code that MET
needs.
> > > Please download a more recent version of GSL:
> > >
> > > http://www.gnu.org/software/gsl/
> > >
> > > and compile that using the instructions here:
> > >
> > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > >
> > > Then, reconfigure and recompile MET. Please let us know if you
> encounter
> > > any other issues or if that works for you.
> > >
> > > Thanks,
> > > Julie
> > >
> > >
> > > On Wed, Sep 2, 2015 at 3:25 AM, Susana Cardoso Pereira via RT <
> > > met_help at ucar.edu> wrote:
> > >
> > >>
> > >> Wed Sep 02 03:25:39 2015: Request 73269 was acted upon.
> > >> Transaction: Ticket created by susana.cardoso at ua.pt
> > >> Queue: met_help
> > >> Subject: fail to compile MET5.0
> > >> Owner: Nobody
> > >> Requestors: susana.cardoso at ua.pt
> > >> Status: new
> > >> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> >
> > >>
> > >>
> > >> Hi,
> > >> I've downloaded the MET 5 release but I'm having trouble
compiling
> it. I
> > >> followed all of your instructions but fail to see where the
error's
> > origin
> > >> might be.
> > >> I attach the config and the make_install log file. I also
checked all
> > the
> > >> met_help archives in an attempt to seek any help but with no
luck.
> > >>
> > >> Thanks in advance
> > >>
> > >> Susana
> > >>
> > >>
> > >
> > >
> > > --
> > > Julie Prestopnik
> > > National Center for Atmospheric Research
> > > Research Applications Laboratory
> > > Phone: 303.497.8399
> > > Email: jpresto at ucar.edu
> > >
> >
> >
> >
> > --
> > Julie Prestopnik
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Phone: 303.497.8399
> > Email: jpresto at ucar.edu
> >
> >
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
Subject: fail to compile MET5.0
From: Susana Cardoso Pereira
Time: Mon Sep 14 04:07:45 2015
Hi Julie,
Sorry, for the late response but I've been out of the office. Thanks
for
support you've been giving me. I really appreciate it.
I've successfully installed the gsl-1.16 package but no luck with the
met-5. I still have the same error message during the make install
step.
Here's some notes on what I've done:
1 – gsl
I had some trouble running the tests but solved it changing the CFLAGS
(./configure CFLAGS="-O0" –prefix=`pwd`). I didn't get any error
message
but can you check if there are missing some files in the gsl lib/inc
directory? I attatch the list of files in those dirs.
2 – met-5
I fail to tell you that I've also download the met-5.0's patches.
I've got the same mistake, during the make install step, when trying
to
compile with the gsl_wavelet (see attach)
Can you help me?
Thanks in advance.
Susana
On Wed, Sep 9, 2015 at 6:02 PM, Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:
> Hi Susana. I'm sorry that you are encountering difficulties with
compiling
> GSL. In the link I sent to you previously:
>
> http://www.gnu.org/software/gsl/
>
> I see there is an email address for help and a user's mailing list:
>
> help-gsl at gnu.org
> http://mail.gnu.org/mailman/listinfo/help-gsl
>
> I don't know what newer version you got, but it looks like we are
using
> gsl-1.13 here.
>
> Please let us know if we can help.
>
> Julie
>
> On Wed, Sep 9, 2015 at 2:06 AM, Susana Cardoso Pereira via RT <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> >
> > Hi Julia,
> >
> > Thanks for the support. It was great. I didn't say anything
because I'm
> > trying to compile the gsl but I'm finding some difficulties. I'm
not sure
> > if there is an error or only a bug in running the tests.
> >
> >
> > Thanks
> > Susana
> >
> > On Tue, Sep 8, 2015 at 6:05 PM, Julie Prestopnik via RT <
> met_help at ucar.edu
> > >
> > wrote:
> >
> > > Hi Susana. I just wanted to follow up. Were you able to
compile a
> more
> > > recent version of GSL and then successfully compile MET
afterward?
> > >
> > > Thanks,
> > > Julie
> > >
> > > On Wed, Sep 2, 2015 at 10:12 AM, Julie Prestopnik
<jpresto at ucar.edu>
> > > wrote:
> > >
> > > > Hi Susana. I'm sorry that you're having trouble compiling
MET.
> Thank
> > > you
> > > > for attaching your config and make_install log files and for
checking
> > the
> > > > met_help archives.
> > > >
> > > > I see that you are using gsl-1.5. Unfortunately, that older
version
> of
> > > > the GSL software does not come with the wavelet code that MET
needs.
> > > > Please download a more recent version of GSL:
> > > >
> > > > http://www.gnu.org/software/gsl/
> > > >
> > > > and compile that using the instructions here:
> > > >
> > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > >
> > > > Then, reconfigure and recompile MET. Please let us know if
you
> > encounter
> > > > any other issues or if that works for you.
> > > >
> > > > Thanks,
> > > > Julie
> > > >
> > > >
> > > > On Wed, Sep 2, 2015 at 3:25 AM, Susana Cardoso Pereira via RT
<
> > > > met_help at ucar.edu> wrote:
> > > >
> > > >>
> > > >> Wed Sep 02 03:25:39 2015: Request 73269 was acted upon.
> > > >> Transaction: Ticket created by susana.cardoso at ua.pt
> > > >> Queue: met_help
> > > >> Subject: fail to compile MET5.0
> > > >> Owner: Nobody
> > > >> Requestors: susana.cardoso at ua.pt
> > > >> Status: new
> > > >> Ticket <URL:
> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > >
> > > >>
> > > >>
> > > >> Hi,
> > > >> I've downloaded the MET 5 release but I'm having trouble
compiling
> > it. I
> > > >> followed all of your instructions but fail to see where the
error's
> > > origin
> > > >> might be.
> > > >> I attach the config and the make_install log file. I also
checked
> all
> > > the
> > > >> met_help archives in an attempt to seek any help but with no
luck.
> > > >>
> > > >> Thanks in advance
> > > >>
> > > >> Susana
> > > >>
> > > >>
> > > >
> > > >
> > > > --
> > > > Julie Prestopnik
> > > > National Center for Atmospheric Research
> > > > Research Applications Laboratory
> > > > Phone: 303.497.8399
> > > > Email: jpresto at ucar.edu
> > > >
> > >
> > >
> > >
> > > --
> > > Julie Prestopnik
> > > National Center for Atmospheric Research
> > > Research Applications Laboratory
> > > Phone: 303.497.8399
> > > Email: jpresto at ucar.edu
> > >
> > >
> >
> >
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
>
------------------------------------------------
Subject: fail to compile MET5.0
From: Julie Prestopnik
Time: Tue Sep 15 10:39:46 2015
Hi Susana.
Thank you for sending all of the attachments! The library and include
files that you have for gsl look good. I don't think there are any
missing
files.
However, I see that you used "icc" to build GSL, but "icpc" to build
MET.
Please try using "icc" to build MET as well.
So please use:
setenv CXX /path/to/icc
or
export CXX=/path/to/icc
depending on which shell you're using, replacing "/path/to/icc" with
the
full path to your icc compiler.
Then run configure and make install again:
./configure --prefix=/home/susana/software/met-5.0
make install >& make_install.log &
Please let me know if that helps solve the problem.
Thanks,
Julie
On Mon, Sep 14, 2015 at 4:07 AM, Susana Cardoso Pereira via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
>
> Hi Julie,
>
> Sorry, for the late response but I've been out of the office. Thanks
for
> support you've been giving me. I really appreciate it.
> I've successfully installed the gsl-1.16 package but no luck with
the
> met-5. I still have the same error message during the make install
step.
> Here's some notes on what I've done:
>
> 1 – gsl
> I had some trouble running the tests but solved it changing the
CFLAGS
> (./configure CFLAGS="-O0" –prefix=`pwd`). I didn't get any error
message
> but can you check if there are missing some files in the gsl
lib/inc
> directory? I attatch the list of files in those dirs.
>
> 2 – met-5
> I fail to tell you that I've also download the met-5.0's patches.
> I've got the same mistake, during the make install step, when trying
to
> compile with the gsl_wavelet (see attach)
>
> Can you help me?
>
> Thanks in advance.
>
> Susana
>
>
> On Wed, Sep 9, 2015 at 6:02 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> >
> wrote:
>
> > Hi Susana. I'm sorry that you are encountering difficulties with
> compiling
> > GSL. In the link I sent to you previously:
> >
> > http://www.gnu.org/software/gsl/
> >
> > I see there is an email address for help and a user's mailing
list:
> >
> > help-gsl at gnu.org
> > http://mail.gnu.org/mailman/listinfo/help-gsl
> >
> > I don't know what newer version you got, but it looks like we are
using
> > gsl-1.13 here.
> >
> > Please let us know if we can help.
> >
> > Julie
> >
> > On Wed, Sep 9, 2015 at 2:06 AM, Susana Cardoso Pereira via RT <
> > met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> > >
> > > Hi Julia,
> > >
> > > Thanks for the support. It was great. I didn't say anything
because I'm
> > > trying to compile the gsl but I'm finding some difficulties. I'm
not
> sure
> > > if there is an error or only a bug in running the tests.
> > >
> > >
> > > Thanks
> > > Susana
> > >
> > > On Tue, Sep 8, 2015 at 6:05 PM, Julie Prestopnik via RT <
> > met_help at ucar.edu
> > > >
> > > wrote:
> > >
> > > > Hi Susana. I just wanted to follow up. Were you able to
compile a
> > more
> > > > recent version of GSL and then successfully compile MET
afterward?
> > > >
> > > > Thanks,
> > > > Julie
> > > >
> > > > On Wed, Sep 2, 2015 at 10:12 AM, Julie Prestopnik
<jpresto at ucar.edu>
> > > > wrote:
> > > >
> > > > > Hi Susana. I'm sorry that you're having trouble compiling
MET.
> > Thank
> > > > you
> > > > > for attaching your config and make_install log files and for
> checking
> > > the
> > > > > met_help archives.
> > > > >
> > > > > I see that you are using gsl-1.5. Unfortunately, that older
> version
> > of
> > > > > the GSL software does not come with the wavelet code that
MET
> needs.
> > > > > Please download a more recent version of GSL:
> > > > >
> > > > > http://www.gnu.org/software/gsl/
> > > > >
> > > > > and compile that using the instructions here:
> > > > >
> > > > >
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > >
> > > > > Then, reconfigure and recompile MET. Please let us know if
you
> > > encounter
> > > > > any other issues or if that works for you.
> > > > >
> > > > > Thanks,
> > > > > Julie
> > > > >
> > > > >
> > > > > On Wed, Sep 2, 2015 at 3:25 AM, Susana Cardoso Pereira via
RT <
> > > > > met_help at ucar.edu> wrote:
> > > > >
> > > > >>
> > > > >> Wed Sep 02 03:25:39 2015: Request 73269 was acted upon.
> > > > >> Transaction: Ticket created by susana.cardoso at ua.pt
> > > > >> Queue: met_help
> > > > >> Subject: fail to compile MET5.0
> > > > >> Owner: Nobody
> > > > >> Requestors: susana.cardoso at ua.pt
> > > > >> Status: new
> > > > >> Ticket <URL:
> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > >
> > > > >>
> > > > >>
> > > > >> Hi,
> > > > >> I've downloaded the MET 5 release but I'm having trouble
compiling
> > > it. I
> > > > >> followed all of your instructions but fail to see where the
> error's
> > > > origin
> > > > >> might be.
> > > > >> I attach the config and the make_install log file. I also
checked
> > all
> > > > the
> > > > >> met_help archives in an attempt to seek any help but with
no luck.
> > > > >>
> > > > >> Thanks in advance
> > > > >>
> > > > >> Susana
> > > > >>
> > > > >>
> > > > >
> > > > >
> > > > > --
> > > > > Julie Prestopnik
> > > > > National Center for Atmospheric Research
> > > > > Research Applications Laboratory
> > > > > Phone: 303.497.8399
> > > > > Email: jpresto at ucar.edu
> > > > >
> > > >
> > > >
> > > >
> > > > --
> > > > Julie Prestopnik
> > > > National Center for Atmospheric Research
> > > > Research Applications Laboratory
> > > > Phone: 303.497.8399
> > > > Email: jpresto at ucar.edu
> > > >
> > > >
> > >
> > >
> >
> >
> > --
> > Julie Prestopnik
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Phone: 303.497.8399
> > Email: jpresto at ucar.edu
> >
> >
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
Subject: fail to compile MET5.0
From: Susana Cardoso Pereira
Time: Wed Sep 16 04:11:24 2015
Hi Julie,
I follow yours instructions: change de compiler from icpc to icc
(export
CXX= icc) with gsl1.13 (btw I was using gsl1.16) and I've still got
the
same error. Two notes: I could only compile the gsl lib with CFLAGS="-
O0"
so I tried to compile the met with the same flags. The result remained
a
flop.
So, it seems to me that the error might be, either in the MET code or
during the gsl's compile process with no optmization).
My programming skills are low so, at this point, I would be very
grateful
with your help before contacting the gsl's help services (you told me,
in
previous messages, that the gsl lib list of files seemed ok - no lib
missing).
Wainting for your instructions,
Susana
On Tue, Sep 15, 2015 at 5:39 PM, Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:
> Hi Susana.
>
> Thank you for sending all of the attachments! The library and
include
> files that you have for gsl look good. I don't think there are any
missing
> files.
>
> However, I see that you used "icc" to build GSL, but "icpc" to build
MET.
> Please try using "icc" to build MET as well.
>
> So please use:
>
> setenv CXX /path/to/icc
>
> or
>
> export CXX=/path/to/icc
>
> depending on which shell you're using, replacing "/path/to/icc" with
the
> full path to your icc compiler.
>
> Then run configure and make install again:
>
> ./configure --prefix=/home/susana/software/met-5.0
> make install >& make_install.log &
>
> Please let me know if that helps solve the problem.
>
> Thanks,
> Julie
>
> On Mon, Sep 14, 2015 at 4:07 AM, Susana Cardoso Pereira via RT <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> >
> > Hi Julie,
> >
> > Sorry, for the late response but I've been out of the office.
Thanks for
> > support you've been giving me. I really appreciate it.
> > I've successfully installed the gsl-1.16 package but no luck with
the
> > met-5. I still have the same error message during the make install
step.
> > Here's some notes on what I've done:
> >
> > 1 – gsl
> > I had some trouble running the tests but solved it changing the
CFLAGS
> > (./configure CFLAGS="-O0" –prefix=`pwd`). I didn't get any error
message
> > but can you check if there are missing some files in the gsl
lib/inc
> > directory? I attatch the list of files in those dirs.
> >
> > 2 – met-5
> > I fail to tell you that I've also download the met-5.0's patches.
> > I've got the same mistake, during the make install step, when
trying to
> > compile with the gsl_wavelet (see attach)
> >
> > Can you help me?
> >
> > Thanks in advance.
> >
> > Susana
> >
> >
> > On Wed, Sep 9, 2015 at 6:02 PM, Julie Prestopnik via RT <
> met_help at ucar.edu
> > >
> > wrote:
> >
> > > Hi Susana. I'm sorry that you are encountering difficulties
with
> > compiling
> > > GSL. In the link I sent to you previously:
> > >
> > > http://www.gnu.org/software/gsl/
> > >
> > > I see there is an email address for help and a user's mailing
list:
> > >
> > > help-gsl at gnu.org
> > > http://mail.gnu.org/mailman/listinfo/help-gsl
> > >
> > > I don't know what newer version you got, but it looks like we
are using
> > > gsl-1.13 here.
> > >
> > > Please let us know if we can help.
> > >
> > > Julie
> > >
> > > On Wed, Sep 9, 2015 at 2:06 AM, Susana Cardoso Pereira via RT <
> > > met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
>
> > > >
> > > > Hi Julia,
> > > >
> > > > Thanks for the support. It was great. I didn't say anything
because
> I'm
> > > > trying to compile the gsl but I'm finding some difficulties.
I'm not
> > sure
> > > > if there is an error or only a bug in running the tests.
> > > >
> > > >
> > > > Thanks
> > > > Susana
> > > >
> > > > On Tue, Sep 8, 2015 at 6:05 PM, Julie Prestopnik via RT <
> > > met_help at ucar.edu
> > > > >
> > > > wrote:
> > > >
> > > > > Hi Susana. I just wanted to follow up. Were you able to
compile a
> > > more
> > > > > recent version of GSL and then successfully compile MET
afterward?
> > > > >
> > > > > Thanks,
> > > > > Julie
> > > > >
> > > > > On Wed, Sep 2, 2015 at 10:12 AM, Julie Prestopnik <
> jpresto at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > > Hi Susana. I'm sorry that you're having trouble compiling
MET.
> > > Thank
> > > > > you
> > > > > > for attaching your config and make_install log files and
for
> > checking
> > > > the
> > > > > > met_help archives.
> > > > > >
> > > > > > I see that you are using gsl-1.5. Unfortunately, that
older
> > version
> > > of
> > > > > > the GSL software does not come with the wavelet code that
MET
> > needs.
> > > > > > Please download a more recent version of GSL:
> > > > > >
> > > > > > http://www.gnu.org/software/gsl/
> > > > > >
> > > > > > and compile that using the instructions here:
> > > > > >
> > > > > >
> > > > > >
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > > >
> > > > > > Then, reconfigure and recompile MET. Please let us know
if you
> > > > encounter
> > > > > > any other issues or if that works for you.
> > > > > >
> > > > > > Thanks,
> > > > > > Julie
> > > > > >
> > > > > >
> > > > > > On Wed, Sep 2, 2015 at 3:25 AM, Susana Cardoso Pereira via
RT <
> > > > > > met_help at ucar.edu> wrote:
> > > > > >
> > > > > >>
> > > > > >> Wed Sep 02 03:25:39 2015: Request 73269 was acted upon.
> > > > > >> Transaction: Ticket created by susana.cardoso at ua.pt
> > > > > >> Queue: met_help
> > > > > >> Subject: fail to compile MET5.0
> > > > > >> Owner: Nobody
> > > > > >> Requestors: susana.cardoso at ua.pt
> > > > > >> Status: new
> > > > > >> Ticket <URL:
> > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > > >
> > > > > >>
> > > > > >>
> > > > > >> Hi,
> > > > > >> I've downloaded the MET 5 release but I'm having trouble
> compiling
> > > > it. I
> > > > > >> followed all of your instructions but fail to see where
the
> > error's
> > > > > origin
> > > > > >> might be.
> > > > > >> I attach the config and the make_install log file. I also
> checked
> > > all
> > > > > the
> > > > > >> met_help archives in an attempt to seek any help but with
no
> luck.
> > > > > >>
> > > > > >> Thanks in advance
> > > > > >>
> > > > > >> Susana
> > > > > >>
> > > > > >>
> > > > > >
> > > > > >
> > > > > > --
> > > > > > Julie Prestopnik
> > > > > > National Center for Atmospheric Research
> > > > > > Research Applications Laboratory
> > > > > > Phone: 303.497.8399
> > > > > > Email: jpresto at ucar.edu
> > > > > >
> > > > >
> > > > >
> > > > >
> > > > > --
> > > > > Julie Prestopnik
> > > > > National Center for Atmospheric Research
> > > > > Research Applications Laboratory
> > > > > Phone: 303.497.8399
> > > > > Email: jpresto at ucar.edu
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> > > --
> > > Julie Prestopnik
> > > National Center for Atmospheric Research
> > > Research Applications Laboratory
> > > Phone: 303.497.8399
> > > Email: jpresto at ucar.edu
> > >
> > >
> >
> >
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
>
------------------------------------------------
Subject: fail to compile MET5.0
From: John Halley Gotway
Time: Wed Sep 16 09:45:08 2015
Hello Susana,
My name is John Halley Gotway and I work with Julie. Thought I'd jump
in
here with a suggestion. I think you should try recompiling MET with
icc
instead of icpc. So please execute the following commands...
cd /home/susana/software/met-5.0
make clean
export CC=`which icc`
export CXX=`which icc`
export F77=`which ifort`
./configure --prefix=/home/susana/software/met-5.0
make install >& make_install.log
Please let us know how it goes.
Thanks,
John
On Wed, Sep 16, 2015 at 4:11 AM, Susana Cardoso Pereira via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
>
> Hi Julie,
>
> I follow yours instructions: change de compiler from icpc to icc
(export
> CXX= icc) with gsl1.13 (btw I was using gsl1.16) and I've still got
the
> same error. Two notes: I could only compile the gsl lib with
CFLAGS="-O0"
> so I tried to compile the met with the same flags. The result
remained a
> flop.
>
> So, it seems to me that the error might be, either in the MET code
or
> during the gsl's compile process with no optmization).
>
> My programming skills are low so, at this point, I would be very
grateful
> with your help before contacting the gsl's help services (you told
me, in
> previous messages, that the gsl lib list of files seemed ok - no lib
> missing).
>
> Wainting for your instructions,
>
> Susana
>
> On Tue, Sep 15, 2015 at 5:39 PM, Julie Prestopnik via RT <
> met_help at ucar.edu>
> wrote:
>
> > Hi Susana.
> >
> > Thank you for sending all of the attachments! The library and
include
> > files that you have for gsl look good. I don't think there are any
> missing
> > files.
> >
> > However, I see that you used "icc" to build GSL, but "icpc" to
build MET.
> > Please try using "icc" to build MET as well.
> >
> > So please use:
> >
> > setenv CXX /path/to/icc
> >
> > or
> >
> > export CXX=/path/to/icc
> >
> > depending on which shell you're using, replacing "/path/to/icc"
with the
> > full path to your icc compiler.
> >
> > Then run configure and make install again:
> >
> > ./configure --prefix=/home/susana/software/met-5.0
> > make install >& make_install.log &
> >
> > Please let me know if that helps solve the problem.
> >
> > Thanks,
> > Julie
> >
> > On Mon, Sep 14, 2015 at 4:07 AM, Susana Cardoso Pereira via RT <
> > met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> > >
> > > Hi Julie,
> > >
> > > Sorry, for the late response but I've been out of the office.
Thanks
> for
> > > support you've been giving me. I really appreciate it.
> > > I've successfully installed the gsl-1.16 package but no luck
with the
> > > met-5. I still have the same error message during the make
install
> step.
> > > Here's some notes on what I've done:
> > >
> > > 1 – gsl
> > > I had some trouble running the tests but solved it changing the
CFLAGS
> > > (./configure CFLAGS="-O0" –prefix=`pwd`). I didn't get any error
> message
> > > but can you check if there are missing some files in the gsl
lib/inc
> > > directory? I attatch the list of files in those dirs.
> > >
> > > 2 – met-5
> > > I fail to tell you that I've also download the met-5.0's
patches.
> > > I've got the same mistake, during the make install step, when
trying to
> > > compile with the gsl_wavelet (see attach)
> > >
> > > Can you help me?
> > >
> > > Thanks in advance.
> > >
> > > Susana
> > >
> > >
> > > On Wed, Sep 9, 2015 at 6:02 PM, Julie Prestopnik via RT <
> > met_help at ucar.edu
> > > >
> > > wrote:
> > >
> > > > Hi Susana. I'm sorry that you are encountering difficulties
with
> > > compiling
> > > > GSL. In the link I sent to you previously:
> > > >
> > > > http://www.gnu.org/software/gsl/
> > > >
> > > > I see there is an email address for help and a user's mailing
list:
> > > >
> > > > help-gsl at gnu.org
> > > > http://mail.gnu.org/mailman/listinfo/help-gsl
> > > >
> > > > I don't know what newer version you got, but it looks like we
are
> using
> > > > gsl-1.13 here.
> > > >
> > > > Please let us know if we can help.
> > > >
> > > > Julie
> > > >
> > > > On Wed, Sep 9, 2015 at 2:06 AM, Susana Cardoso Pereira via RT
<
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> > > > >
> > > > > Hi Julia,
> > > > >
> > > > > Thanks for the support. It was great. I didn't say anything
because
> > I'm
> > > > > trying to compile the gsl but I'm finding some difficulties.
I'm
> not
> > > sure
> > > > > if there is an error or only a bug in running the tests.
> > > > >
> > > > >
> > > > > Thanks
> > > > > Susana
> > > > >
> > > > > On Tue, Sep 8, 2015 at 6:05 PM, Julie Prestopnik via RT <
> > > > met_help at ucar.edu
> > > > > >
> > > > > wrote:
> > > > >
> > > > > > Hi Susana. I just wanted to follow up. Were you able to
> compile a
> > > > more
> > > > > > recent version of GSL and then successfully compile MET
> afterward?
> > > > > >
> > > > > > Thanks,
> > > > > > Julie
> > > > > >
> > > > > > On Wed, Sep 2, 2015 at 10:12 AM, Julie Prestopnik <
> > jpresto at ucar.edu>
> > > > > > wrote:
> > > > > >
> > > > > > > Hi Susana. I'm sorry that you're having trouble
compiling MET.
> > > > Thank
> > > > > > you
> > > > > > > for attaching your config and make_install log files and
for
> > > checking
> > > > > the
> > > > > > > met_help archives.
> > > > > > >
> > > > > > > I see that you are using gsl-1.5. Unfortunately, that
older
> > > version
> > > > of
> > > > > > > the GSL software does not come with the wavelet code
that MET
> > > needs.
> > > > > > > Please download a more recent version of GSL:
> > > > > > >
> > > > > > > http://www.gnu.org/software/gsl/
> > > > > > >
> > > > > > > and compile that using the instructions here:
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > > > >
> > > > > > > Then, reconfigure and recompile MET. Please let us know
if you
> > > > > encounter
> > > > > > > any other issues or if that works for you.
> > > > > > >
> > > > > > > Thanks,
> > > > > > > Julie
> > > > > > >
> > > > > > >
> > > > > > > On Wed, Sep 2, 2015 at 3:25 AM, Susana Cardoso Pereira
via RT <
> > > > > > > met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > >>
> > > > > > >> Wed Sep 02 03:25:39 2015: Request 73269 was acted upon.
> > > > > > >> Transaction: Ticket created by susana.cardoso at ua.pt
> > > > > > >> Queue: met_help
> > > > > > >> Subject: fail to compile MET5.0
> > > > > > >> Owner: Nobody
> > > > > > >> Requestors: susana.cardoso at ua.pt
> > > > > > >> Status: new
> > > > > > >> Ticket <URL:
> > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > > > >
> > > > > > >>
> > > > > > >>
> > > > > > >> Hi,
> > > > > > >> I've downloaded the MET 5 release but I'm having
trouble
> > compiling
> > > > > it. I
> > > > > > >> followed all of your instructions but fail to see where
the
> > > error's
> > > > > > origin
> > > > > > >> might be.
> > > > > > >> I attach the config and the make_install log file. I
also
> > checked
> > > > all
> > > > > > the
> > > > > > >> met_help archives in an attempt to seek any help but
with no
> > luck.
> > > > > > >>
> > > > > > >> Thanks in advance
> > > > > > >>
> > > > > > >> Susana
> > > > > > >>
> > > > > > >>
> > > > > > >
> > > > > > >
> > > > > > > --
> > > > > > > Julie Prestopnik
> > > > > > > National Center for Atmospheric Research
> > > > > > > Research Applications Laboratory
> > > > > > > Phone: 303.497.8399
> > > > > > > Email: jpresto at ucar.edu
> > > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > --
> > > > > > Julie Prestopnik
> > > > > > National Center for Atmospheric Research
> > > > > > Research Applications Laboratory
> > > > > > Phone: 303.497.8399
> > > > > > Email: jpresto at ucar.edu
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > > --
> > > > Julie Prestopnik
> > > > National Center for Atmospheric Research
> > > > Research Applications Laboratory
> > > > Phone: 303.497.8399
> > > > Email: jpresto at ucar.edu
> > > >
> > > >
> > >
> > >
> >
> >
> > --
> > Julie Prestopnik
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Phone: 303.497.8399
> > Email: jpresto at ucar.edu
> >
> >
>
>
------------------------------------------------
Subject: fail to compile MET5.0
From: Susana Cardoso Pereira
Time: Wed Sep 16 11:29:59 2015
Hi John,
Susana
Welcome abord. So, I've followed your instructions and I still have
issues with MET. I attach the config ant make install log files, just
in
case.
Thanks
PS: I'm using gsl-1.16
On Wed, Sep 16, 2015 at 4:45 PM, John Halley Gotway via RT <
met_help at ucar.edu> wrote:
> Hello Susana,
>
> My name is John Halley Gotway and I work with Julie. Thought I'd
jump in
> here with a suggestion. I think you should try recompiling MET with
icc
> instead of icpc. So please execute the following commands...
>
> cd /home/susana/software/met-5.0
> make clean
> export CC=`which icc`
> export CXX=`which icc`
> export F77=`which ifort`
> ./configure --prefix=/home/susana/software/met-5.0
> make install >& make_install.log
>
> Please let us know how it goes.
>
> Thanks,
> John
>
> On Wed, Sep 16, 2015 at 4:11 AM, Susana Cardoso Pereira via RT <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> >
> > Hi Julie,
> >
> > I follow yours instructions: change de compiler from icpc to icc
(export
> > CXX= icc) with gsl1.13 (btw I was using gsl1.16) and I've still
got the
> > same error. Two notes: I could only compile the gsl lib with
CFLAGS="-O0"
> > so I tried to compile the met with the same flags. The result
remained a
> > flop.
> >
> > So, it seems to me that the error might be, either in the MET code
or
> > during the gsl's compile process with no optmization).
> >
> > My programming skills are low so, at this point, I would be very
grateful
> > with your help before contacting the gsl's help services (you told
me, in
> > previous messages, that the gsl lib list of files seemed ok - no
lib
> > missing).
> >
> > Wainting for your instructions,
> >
> > Susana
> >
> > On Tue, Sep 15, 2015 at 5:39 PM, Julie Prestopnik via RT <
> > met_help at ucar.edu>
> > wrote:
> >
> > > Hi Susana.
> > >
> > > Thank you for sending all of the attachments! The library and
include
> > > files that you have for gsl look good. I don't think there are
any
> > missing
> > > files.
> > >
> > > However, I see that you used "icc" to build GSL, but "icpc" to
build
> MET.
> > > Please try using "icc" to build MET as well.
> > >
> > > So please use:
> > >
> > > setenv CXX /path/to/icc
> > >
> > > or
> > >
> > > export CXX=/path/to/icc
> > >
> > > depending on which shell you're using, replacing "/path/to/icc"
with
> the
> > > full path to your icc compiler.
> > >
> > > Then run configure and make install again:
> > >
> > > ./configure --prefix=/home/susana/software/met-5.0
> > > make install >& make_install.log &
> > >
> > > Please let me know if that helps solve the problem.
> > >
> > > Thanks,
> > > Julie
> > >
> > > On Mon, Sep 14, 2015 at 4:07 AM, Susana Cardoso Pereira via RT <
> > > met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
>
> > > >
> > > > Hi Julie,
> > > >
> > > > Sorry, for the late response but I've been out of the office.
Thanks
> > for
> > > > support you've been giving me. I really appreciate it.
> > > > I've successfully installed the gsl-1.16 package but no luck
with the
> > > > met-5. I still have the same error message during the make
install
> > step.
> > > > Here's some notes on what I've done:
> > > >
> > > > 1 – gsl
> > > > I had some trouble running the tests but solved it changing
the
> CFLAGS
> > > > (./configure CFLAGS="-O0" –prefix=`pwd`). I didn't get any
error
> > message
> > > > but can you check if there are missing some files in the gsl
lib/inc
> > > > directory? I attatch the list of files in those dirs.
> > > >
> > > > 2 – met-5
> > > > I fail to tell you that I've also download the met-5.0's
patches.
> > > > I've got the same mistake, during the make install step, when
trying
> to
> > > > compile with the gsl_wavelet (see attach)
> > > >
> > > > Can you help me?
> > > >
> > > > Thanks in advance.
> > > >
> > > > Susana
> > > >
> > > >
> > > > On Wed, Sep 9, 2015 at 6:02 PM, Julie Prestopnik via RT <
> > > met_help at ucar.edu
> > > > >
> > > > wrote:
> > > >
> > > > > Hi Susana. I'm sorry that you are encountering difficulties
with
> > > > compiling
> > > > > GSL. In the link I sent to you previously:
> > > > >
> > > > > http://www.gnu.org/software/gsl/
> > > > >
> > > > > I see there is an email address for help and a user's
mailing list:
> > > > >
> > > > > help-gsl at gnu.org
> > > > > http://mail.gnu.org/mailman/listinfo/help-gsl
> > > > >
> > > > > I don't know what newer version you got, but it looks like
we are
> > using
> > > > > gsl-1.13 here.
> > > > >
> > > > > Please let us know if we can help.
> > > > >
> > > > > Julie
> > > > >
> > > > > On Wed, Sep 9, 2015 at 2:06 AM, Susana Cardoso Pereira via
RT <
> > > > > met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> > > > > >
> > > > > > Hi Julia,
> > > > > >
> > > > > > Thanks for the support. It was great. I didn't say
anything
> because
> > > I'm
> > > > > > trying to compile the gsl but I'm finding some
difficulties. I'm
> > not
> > > > sure
> > > > > > if there is an error or only a bug in running the tests.
> > > > > >
> > > > > >
> > > > > > Thanks
> > > > > > Susana
> > > > > >
> > > > > > On Tue, Sep 8, 2015 at 6:05 PM, Julie Prestopnik via RT <
> > > > > met_help at ucar.edu
> > > > > > >
> > > > > > wrote:
> > > > > >
> > > > > > > Hi Susana. I just wanted to follow up. Were you able
to
> > compile a
> > > > > more
> > > > > > > recent version of GSL and then successfully compile MET
> > afterward?
> > > > > > >
> > > > > > > Thanks,
> > > > > > > Julie
> > > > > > >
> > > > > > > On Wed, Sep 2, 2015 at 10:12 AM, Julie Prestopnik <
> > > jpresto at ucar.edu>
> > > > > > > wrote:
> > > > > > >
> > > > > > > > Hi Susana. I'm sorry that you're having trouble
compiling
> MET.
> > > > > Thank
> > > > > > > you
> > > > > > > > for attaching your config and make_install log files
and for
> > > > checking
> > > > > > the
> > > > > > > > met_help archives.
> > > > > > > >
> > > > > > > > I see that you are using gsl-1.5. Unfortunately, that
older
> > > > version
> > > > > of
> > > > > > > > the GSL software does not come with the wavelet code
that MET
> > > > needs.
> > > > > > > > Please download a more recent version of GSL:
> > > > > > > >
> > > > > > > > http://www.gnu.org/software/gsl/
> > > > > > > >
> > > > > > > > and compile that using the instructions here:
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > > > > >
> > > > > > > > Then, reconfigure and recompile MET. Please let us
know if
> you
> > > > > > encounter
> > > > > > > > any other issues or if that works for you.
> > > > > > > >
> > > > > > > > Thanks,
> > > > > > > > Julie
> > > > > > > >
> > > > > > > >
> > > > > > > > On Wed, Sep 2, 2015 at 3:25 AM, Susana Cardoso Pereira
via
> RT <
> > > > > > > > met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > >>
> > > > > > > >> Wed Sep 02 03:25:39 2015: Request 73269 was acted
upon.
> > > > > > > >> Transaction: Ticket created by susana.cardoso at ua.pt
> > > > > > > >> Queue: met_help
> > > > > > > >> Subject: fail to compile MET5.0
> > > > > > > >> Owner: Nobody
> > > > > > > >> Requestors: susana.cardoso at ua.pt
> > > > > > > >> Status: new
> > > > > > > >> Ticket <URL:
> > > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > > > > >
> > > > > > > >>
> > > > > > > >>
> > > > > > > >> Hi,
> > > > > > > >> I've downloaded the MET 5 release but I'm having
trouble
> > > compiling
> > > > > > it. I
> > > > > > > >> followed all of your instructions but fail to see
where the
> > > > error's
> > > > > > > origin
> > > > > > > >> might be.
> > > > > > > >> I attach the config and the make_install log file. I
also
> > > checked
> > > > > all
> > > > > > > the
> > > > > > > >> met_help archives in an attempt to seek any help but
with no
> > > luck.
> > > > > > > >>
> > > > > > > >> Thanks in advance
> > > > > > > >>
> > > > > > > >> Susana
> > > > > > > >>
> > > > > > > >>
> > > > > > > >
> > > > > > > >
> > > > > > > > --
> > > > > > > > Julie Prestopnik
> > > > > > > > National Center for Atmospheric Research
> > > > > > > > Research Applications Laboratory
> > > > > > > > Phone: 303.497.8399
> > > > > > > > Email: jpresto at ucar.edu
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > --
> > > > > > > Julie Prestopnik
> > > > > > > National Center for Atmospheric Research
> > > > > > > Research Applications Laboratory
> > > > > > > Phone: 303.497.8399
> > > > > > > Email: jpresto at ucar.edu
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > > --
> > > > > Julie Prestopnik
> > > > > National Center for Atmospheric Research
> > > > > Research Applications Laboratory
> > > > > Phone: 303.497.8399
> > > > > Email: jpresto at ucar.edu
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> > > --
> > > Julie Prestopnik
> > > National Center for Atmospheric Research
> > > Research Applications Laboratory
> > > Phone: 303.497.8399
> > > Email: jpresto at ucar.edu
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: fail to compile MET5.0
From: John Halley Gotway
Time: Wed Sep 16 11:49:00 2015
Susana,
I just successfully recompiled MET using GSL-1.16, so we should be
able to
make it work.
Let's try recompiling GSL first...
cd /home/susana/software/gsl-1.16
make clean
setenv CC `which icc`
./configure --prefix=home/susana/software/gsl-1.16
make
make install
And then recompile MET:
cd /home/susana/software/met-5.0
make clean
make install >& make_install.log
Please let me know how that goes.
Thanks,
John
On Wed, Sep 16, 2015 at 11:29 AM, Susana Cardoso Pereira via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
>
> Hi John,
>
> Susana
> Welcome abord. So, I've followed your instructions and I still
have
> issues with MET. I attach the config ant make install log files,
just in
> case.
>
> Thanks
>
> PS: I'm using gsl-1.16
>
> On Wed, Sep 16, 2015 at 4:45 PM, John Halley Gotway via RT <
> met_help at ucar.edu> wrote:
>
> > Hello Susana,
> >
> > My name is John Halley Gotway and I work with Julie. Thought I'd
jump in
> > here with a suggestion. I think you should try recompiling MET
with icc
> > instead of icpc. So please execute the following commands...
> >
> > cd /home/susana/software/met-5.0
> > make clean
> > export CC=`which icc`
> > export CXX=`which icc`
> > export F77=`which ifort`
> > ./configure --prefix=/home/susana/software/met-5.0
> > make install >& make_install.log
> >
> > Please let us know how it goes.
> >
> > Thanks,
> > John
> >
> > On Wed, Sep 16, 2015 at 4:11 AM, Susana Cardoso Pereira via RT <
> > met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> > >
> > > Hi Julie,
> > >
> > > I follow yours instructions: change de compiler from icpc to icc
> (export
> > > CXX= icc) with gsl1.13 (btw I was using gsl1.16) and I've still
got the
> > > same error. Two notes: I could only compile the gsl lib with
> CFLAGS="-O0"
> > > so I tried to compile the met with the same flags. The result
remained
> a
> > > flop.
> > >
> > > So, it seems to me that the error might be, either in the MET
code or
> > > during the gsl's compile process with no optmization).
> > >
> > > My programming skills are low so, at this point, I would be very
> grateful
> > > with your help before contacting the gsl's help services (you
told me,
> in
> > > previous messages, that the gsl lib list of files seemed ok - no
lib
> > > missing).
> > >
> > > Wainting for your instructions,
> > >
> > > Susana
> > >
> > > On Tue, Sep 15, 2015 at 5:39 PM, Julie Prestopnik via RT <
> > > met_help at ucar.edu>
> > > wrote:
> > >
> > > > Hi Susana.
> > > >
> > > > Thank you for sending all of the attachments! The library and
> include
> > > > files that you have for gsl look good. I don't think there are
any
> > > missing
> > > > files.
> > > >
> > > > However, I see that you used "icc" to build GSL, but "icpc" to
build
> > MET.
> > > > Please try using "icc" to build MET as well.
> > > >
> > > > So please use:
> > > >
> > > > setenv CXX /path/to/icc
> > > >
> > > > or
> > > >
> > > > export CXX=/path/to/icc
> > > >
> > > > depending on which shell you're using, replacing
"/path/to/icc" with
> > the
> > > > full path to your icc compiler.
> > > >
> > > > Then run configure and make install again:
> > > >
> > > > ./configure --prefix=/home/susana/software/met-5.0
> > > > make install >& make_install.log &
> > > >
> > > > Please let me know if that helps solve the problem.
> > > >
> > > > Thanks,
> > > > Julie
> > > >
> > > > On Mon, Sep 14, 2015 at 4:07 AM, Susana Cardoso Pereira via RT
<
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> > > > >
> > > > > Hi Julie,
> > > > >
> > > > > Sorry, for the late response but I've been out of the
office.
> Thanks
> > > for
> > > > > support you've been giving me. I really appreciate it.
> > > > > I've successfully installed the gsl-1.16 package but no luck
with
> the
> > > > > met-5. I still have the same error message during the make
install
> > > step.
> > > > > Here's some notes on what I've done:
> > > > >
> > > > > 1 – gsl
> > > > > I had some trouble running the tests but solved it changing
the
> > CFLAGS
> > > > > (./configure CFLAGS="-O0" –prefix=`pwd`). I didn't get any
error
> > > message
> > > > > but can you check if there are missing some files in the
gsl
> lib/inc
> > > > > directory? I attatch the list of files in those dirs.
> > > > >
> > > > > 2 – met-5
> > > > > I fail to tell you that I've also download the met-5.0's
patches.
> > > > > I've got the same mistake, during the make install step,
when
> trying
> > to
> > > > > compile with the gsl_wavelet (see attach)
> > > > >
> > > > > Can you help me?
> > > > >
> > > > > Thanks in advance.
> > > > >
> > > > > Susana
> > > > >
> > > > >
> > > > > On Wed, Sep 9, 2015 at 6:02 PM, Julie Prestopnik via RT <
> > > > met_help at ucar.edu
> > > > > >
> > > > > wrote:
> > > > >
> > > > > > Hi Susana. I'm sorry that you are encountering
difficulties with
> > > > > compiling
> > > > > > GSL. In the link I sent to you previously:
> > > > > >
> > > > > > http://www.gnu.org/software/gsl/
> > > > > >
> > > > > > I see there is an email address for help and a user's
mailing
> list:
> > > > > >
> > > > > > help-gsl at gnu.org
> > > > > > http://mail.gnu.org/mailman/listinfo/help-gsl
> > > > > >
> > > > > > I don't know what newer version you got, but it looks like
we are
> > > using
> > > > > > gsl-1.13 here.
> > > > > >
> > > > > > Please let us know if we can help.
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > > On Wed, Sep 9, 2015 at 2:06 AM, Susana Cardoso Pereira via
RT <
> > > > > > met_help at ucar.edu> wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> >
> > > > > > >
> > > > > > > Hi Julia,
> > > > > > >
> > > > > > > Thanks for the support. It was great. I didn't say
anything
> > because
> > > > I'm
> > > > > > > trying to compile the gsl but I'm finding some
difficulties.
> I'm
> > > not
> > > > > sure
> > > > > > > if there is an error or only a bug in running the tests.
> > > > > > >
> > > > > > >
> > > > > > > Thanks
> > > > > > > Susana
> > > > > > >
> > > > > > > On Tue, Sep 8, 2015 at 6:05 PM, Julie Prestopnik via RT
<
> > > > > > met_help at ucar.edu
> > > > > > > >
> > > > > > > wrote:
> > > > > > >
> > > > > > > > Hi Susana. I just wanted to follow up. Were you able
to
> > > compile a
> > > > > > more
> > > > > > > > recent version of GSL and then successfully compile
MET
> > > afterward?
> > > > > > > >
> > > > > > > > Thanks,
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Wed, Sep 2, 2015 at 10:12 AM, Julie Prestopnik <
> > > > jpresto at ucar.edu>
> > > > > > > > wrote:
> > > > > > > >
> > > > > > > > > Hi Susana. I'm sorry that you're having trouble
compiling
> > MET.
> > > > > > Thank
> > > > > > > > you
> > > > > > > > > for attaching your config and make_install log files
and
> for
> > > > > checking
> > > > > > > the
> > > > > > > > > met_help archives.
> > > > > > > > >
> > > > > > > > > I see that you are using gsl-1.5. Unfortunately,
that
> older
> > > > > version
> > > > > > of
> > > > > > > > > the GSL software does not come with the wavelet code
that
> MET
> > > > > needs.
> > > > > > > > > Please download a more recent version of GSL:
> > > > > > > > >
> > > > > > > > > http://www.gnu.org/software/gsl/
> > > > > > > > >
> > > > > > > > > and compile that using the instructions here:
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > > > > > >
> > > > > > > > > Then, reconfigure and recompile MET. Please let us
know if
> > you
> > > > > > > encounter
> > > > > > > > > any other issues or if that works for you.
> > > > > > > > >
> > > > > > > > > Thanks,
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > On Wed, Sep 2, 2015 at 3:25 AM, Susana Cardoso
Pereira via
> > RT <
> > > > > > > > > met_help at ucar.edu> wrote:
> > > > > > > > >
> > > > > > > > >>
> > > > > > > > >> Wed Sep 02 03:25:39 2015: Request 73269 was acted
upon.
> > > > > > > > >> Transaction: Ticket created by susana.cardoso at ua.pt
> > > > > > > > >> Queue: met_help
> > > > > > > > >> Subject: fail to compile MET5.0
> > > > > > > > >> Owner: Nobody
> > > > > > > > >> Requestors: susana.cardoso at ua.pt
> > > > > > > > >> Status: new
> > > > > > > > >> Ticket <URL:
> > > > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > > > > > >
> > > > > > > > >>
> > > > > > > > >>
> > > > > > > > >> Hi,
> > > > > > > > >> I've downloaded the MET 5 release but I'm having
trouble
> > > > compiling
> > > > > > > it. I
> > > > > > > > >> followed all of your instructions but fail to see
where
> the
> > > > > error's
> > > > > > > > origin
> > > > > > > > >> might be.
> > > > > > > > >> I attach the config and the make_install log file.
I also
> > > > checked
> > > > > > all
> > > > > > > > the
> > > > > > > > >> met_help archives in an attempt to seek any help
but with
> no
> > > > luck.
> > > > > > > > >>
> > > > > > > > >> Thanks in advance
> > > > > > > > >>
> > > > > > > > >> Susana
> > > > > > > > >>
> > > > > > > > >>
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > --
> > > > > > > > > Julie Prestopnik
> > > > > > > > > National Center for Atmospheric Research
> > > > > > > > > Research Applications Laboratory
> > > > > > > > > Phone: 303.497.8399
> > > > > > > > > Email: jpresto at ucar.edu
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > --
> > > > > > > > Julie Prestopnik
> > > > > > > > National Center for Atmospheric Research
> > > > > > > > Research Applications Laboratory
> > > > > > > > Phone: 303.497.8399
> > > > > > > > Email: jpresto at ucar.edu
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > > > --
> > > > > > Julie Prestopnik
> > > > > > National Center for Atmospheric Research
> > > > > > Research Applications Laboratory
> > > > > > Phone: 303.497.8399
> > > > > > Email: jpresto at ucar.edu
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > > --
> > > > Julie Prestopnik
> > > > National Center for Atmospheric Research
> > > > Research Applications Laboratory
> > > > Phone: 303.497.8399
> > > > Email: jpresto at ucar.edu
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: fail to compile MET5.0
From: Susana Cardoso Pereira
Time: Wed Sep 16 12:05:13 2015
Hello John
Ok. That solution I've already tested. The only difference is that I
can
only compile gsl with no optimization flags.
These are the cmds that I used with gsl:
make clean
export CC=`which icc`
export CXX=`which icc`
export F77=`which ifort`
./configure CFLAGS="-O0" --prefix=/home/susana/software/gsl-1.16
make
make check > log 2>&1
make install
Susana
On Wed, Sep 16, 2015 at 6:49 PM, John Halley Gotway via RT <
met_help at ucar.edu> wrote:
> Susana,
>
> I just successfully recompiled MET using GSL-1.16, so we should be
able to
> make it work.
>
> Let's try recompiling GSL first...
>
> cd /home/susana/software/gsl-1.16
> make clean
> setenv CC `which icc`
> ./configure --prefix=home/susana/software/gsl-1.16
> make
> make install
>
> And then recompile MET:
>
> cd /home/susana/software/met-5.0
> make clean
> make install >& make_install.log
>
> Please let me know how that goes.
>
> Thanks,
> John
>
>
>
> On Wed, Sep 16, 2015 at 11:29 AM, Susana Cardoso Pereira via RT <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> >
> > Hi John,
> >
> > Susana
> > Welcome abord. So, I've followed your instructions and I still
have
> > issues with MET. I attach the config ant make install log files,
just in
> > case.
> >
> > Thanks
> >
> > PS: I'm using gsl-1.16
> >
> > On Wed, Sep 16, 2015 at 4:45 PM, John Halley Gotway via RT <
> > met_help at ucar.edu> wrote:
> >
> > > Hello Susana,
> > >
> > > My name is John Halley Gotway and I work with Julie. Thought
I'd jump
> in
> > > here with a suggestion. I think you should try recompiling MET
with
> icc
> > > instead of icpc. So please execute the following commands...
> > >
> > > cd /home/susana/software/met-5.0
> > > make clean
> > > export CC=`which icc`
> > > export CXX=`which icc`
> > > export F77=`which ifort`
> > > ./configure --prefix=/home/susana/software/met-5.0
> > > make install >& make_install.log
> > >
> > > Please let us know how it goes.
> > >
> > > Thanks,
> > > John
> > >
> > > On Wed, Sep 16, 2015 at 4:11 AM, Susana Cardoso Pereira via RT <
> > > met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
>
> > > >
> > > > Hi Julie,
> > > >
> > > > I follow yours instructions: change de compiler from icpc to
icc
> > (export
> > > > CXX= icc) with gsl1.13 (btw I was using gsl1.16) and I've
still got
> the
> > > > same error. Two notes: I could only compile the gsl lib with
> > CFLAGS="-O0"
> > > > so I tried to compile the met with the same flags. The result
> remained
> > a
> > > > flop.
> > > >
> > > > So, it seems to me that the error might be, either in the MET
code or
> > > > during the gsl's compile process with no optmization).
> > > >
> > > > My programming skills are low so, at this point, I would be
very
> > grateful
> > > > with your help before contacting the gsl's help services (you
told
> me,
> > in
> > > > previous messages, that the gsl lib list of files seemed ok -
no lib
> > > > missing).
> > > >
> > > > Wainting for your instructions,
> > > >
> > > > Susana
> > > >
> > > > On Tue, Sep 15, 2015 at 5:39 PM, Julie Prestopnik via RT <
> > > > met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > > Hi Susana.
> > > > >
> > > > > Thank you for sending all of the attachments! The library
and
> > include
> > > > > files that you have for gsl look good. I don't think there
are any
> > > > missing
> > > > > files.
> > > > >
> > > > > However, I see that you used "icc" to build GSL, but "icpc"
to
> build
> > > MET.
> > > > > Please try using "icc" to build MET as well.
> > > > >
> > > > > So please use:
> > > > >
> > > > > setenv CXX /path/to/icc
> > > > >
> > > > > or
> > > > >
> > > > > export CXX=/path/to/icc
> > > > >
> > > > > depending on which shell you're using, replacing
"/path/to/icc"
> with
> > > the
> > > > > full path to your icc compiler.
> > > > >
> > > > > Then run configure and make install again:
> > > > >
> > > > > ./configure --prefix=/home/susana/software/met-5.0
> > > > > make install >& make_install.log &
> > > > >
> > > > > Please let me know if that helps solve the problem.
> > > > >
> > > > > Thanks,
> > > > > Julie
> > > > >
> > > > > On Mon, Sep 14, 2015 at 4:07 AM, Susana Cardoso Pereira via
RT <
> > > > > met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> > > > > >
> > > > > > Hi Julie,
> > > > > >
> > > > > > Sorry, for the late response but I've been out of the
office.
> > Thanks
> > > > for
> > > > > > support you've been giving me. I really appreciate it.
> > > > > > I've successfully installed the gsl-1.16 package but no
luck with
> > the
> > > > > > met-5. I still have the same error message during the make
> install
> > > > step.
> > > > > > Here's some notes on what I've done:
> > > > > >
> > > > > > 1 – gsl
> > > > > > I had some trouble running the tests but solved it
changing the
> > > CFLAGS
> > > > > > (./configure CFLAGS="-O0" –prefix=`pwd`). I didn't get any
error
> > > > message
> > > > > > but can you check if there are missing some files in the
gsl
> > lib/inc
> > > > > > directory? I attatch the list of files in those dirs.
> > > > > >
> > > > > > 2 – met-5
> > > > > > I fail to tell you that I've also download the met-5.0's
patches.
> > > > > > I've got the same mistake, during the make install step,
when
> > trying
> > > to
> > > > > > compile with the gsl_wavelet (see attach)
> > > > > >
> > > > > > Can you help me?
> > > > > >
> > > > > > Thanks in advance.
> > > > > >
> > > > > > Susana
> > > > > >
> > > > > >
> > > > > > On Wed, Sep 9, 2015 at 6:02 PM, Julie Prestopnik via RT <
> > > > > met_help at ucar.edu
> > > > > > >
> > > > > > wrote:
> > > > > >
> > > > > > > Hi Susana. I'm sorry that you are encountering
difficulties
> with
> > > > > > compiling
> > > > > > > GSL. In the link I sent to you previously:
> > > > > > >
> > > > > > > http://www.gnu.org/software/gsl/
> > > > > > >
> > > > > > > I see there is an email address for help and a user's
mailing
> > list:
> > > > > > >
> > > > > > > help-gsl at gnu.org
> > > > > > > http://mail.gnu.org/mailman/listinfo/help-gsl
> > > > > > >
> > > > > > > I don't know what newer version you got, but it looks
like we
> are
> > > > using
> > > > > > > gsl-1.13 here.
> > > > > > >
> > > > > > > Please let us know if we can help.
> > > > > > >
> > > > > > > Julie
> > > > > > >
> > > > > > > On Wed, Sep 9, 2015 at 2:06 AM, Susana Cardoso Pereira
via RT <
> > > > > > > met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > <URL:
> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > >
> > > > > > > >
> > > > > > > > Hi Julia,
> > > > > > > >
> > > > > > > > Thanks for the support. It was great. I didn't say
anything
> > > because
> > > > > I'm
> > > > > > > > trying to compile the gsl but I'm finding some
difficulties.
> > I'm
> > > > not
> > > > > > sure
> > > > > > > > if there is an error or only a bug in running the
tests.
> > > > > > > >
> > > > > > > >
> > > > > > > > Thanks
> > > > > > > > Susana
> > > > > > > >
> > > > > > > > On Tue, Sep 8, 2015 at 6:05 PM, Julie Prestopnik via
RT <
> > > > > > > met_help at ucar.edu
> > > > > > > > >
> > > > > > > > wrote:
> > > > > > > >
> > > > > > > > > Hi Susana. I just wanted to follow up. Were you
able to
> > > > compile a
> > > > > > > more
> > > > > > > > > recent version of GSL and then successfully compile
MET
> > > > afterward?
> > > > > > > > >
> > > > > > > > > Thanks,
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Wed, Sep 2, 2015 at 10:12 AM, Julie Prestopnik <
> > > > > jpresto at ucar.edu>
> > > > > > > > > wrote:
> > > > > > > > >
> > > > > > > > > > Hi Susana. I'm sorry that you're having trouble
> compiling
> > > MET.
> > > > > > > Thank
> > > > > > > > > you
> > > > > > > > > > for attaching your config and make_install log
files and
> > for
> > > > > > checking
> > > > > > > > the
> > > > > > > > > > met_help archives.
> > > > > > > > > >
> > > > > > > > > > I see that you are using gsl-1.5. Unfortunately,
that
> > older
> > > > > > version
> > > > > > > of
> > > > > > > > > > the GSL software does not come with the wavelet
code that
> > MET
> > > > > > needs.
> > > > > > > > > > Please download a more recent version of GSL:
> > > > > > > > > >
> > > > > > > > > > http://www.gnu.org/software/gsl/
> > > > > > > > > >
> > > > > > > > > > and compile that using the instructions here:
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > > > > > > >
> > > > > > > > > > Then, reconfigure and recompile MET. Please let
us know
> if
> > > you
> > > > > > > > encounter
> > > > > > > > > > any other issues or if that works for you.
> > > > > > > > > >
> > > > > > > > > > Thanks,
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > On Wed, Sep 2, 2015 at 3:25 AM, Susana Cardoso
Pereira
> via
> > > RT <
> > > > > > > > > > met_help at ucar.edu> wrote:
> > > > > > > > > >
> > > > > > > > > >>
> > > > > > > > > >> Wed Sep 02 03:25:39 2015: Request 73269 was acted
upon.
> > > > > > > > > >> Transaction: Ticket created by
susana.cardoso at ua.pt
> > > > > > > > > >> Queue: met_help
> > > > > > > > > >> Subject: fail to compile MET5.0
> > > > > > > > > >> Owner: Nobody
> > > > > > > > > >> Requestors: susana.cardoso at ua.pt
> > > > > > > > > >> Status: new
> > > > > > > > > >> Ticket <URL:
> > > > > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > > > > > > >
> > > > > > > > > >>
> > > > > > > > > >>
> > > > > > > > > >> Hi,
> > > > > > > > > >> I've downloaded the MET 5 release but I'm having
trouble
> > > > > compiling
> > > > > > > > it. I
> > > > > > > > > >> followed all of your instructions but fail to see
where
> > the
> > > > > > error's
> > > > > > > > > origin
> > > > > > > > > >> might be.
> > > > > > > > > >> I attach the config and the make_install log
file. I
> also
> > > > > checked
> > > > > > > all
> > > > > > > > > the
> > > > > > > > > >> met_help archives in an attempt to seek any help
but
> with
> > no
> > > > > luck.
> > > > > > > > > >>
> > > > > > > > > >> Thanks in advance
> > > > > > > > > >>
> > > > > > > > > >> Susana
> > > > > > > > > >>
> > > > > > > > > >>
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > --
> > > > > > > > > > Julie Prestopnik
> > > > > > > > > > National Center for Atmospheric Research
> > > > > > > > > > Research Applications Laboratory
> > > > > > > > > > Phone: 303.497.8399
> > > > > > > > > > Email: jpresto at ucar.edu
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > --
> > > > > > > > > Julie Prestopnik
> > > > > > > > > National Center for Atmospheric Research
> > > > > > > > > Research Applications Laboratory
> > > > > > > > > Phone: 303.497.8399
> > > > > > > > > Email: jpresto at ucar.edu
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > --
> > > > > > > Julie Prestopnik
> > > > > > > National Center for Atmospheric Research
> > > > > > > Research Applications Laboratory
> > > > > > > Phone: 303.497.8399
> > > > > > > Email: jpresto at ucar.edu
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > > --
> > > > > Julie Prestopnik
> > > > > National Center for Atmospheric Research
> > > > > Research Applications Laboratory
> > > > > Phone: 303.497.8399
> > > > > Email: jpresto at ucar.edu
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: fail to compile MET5.0
From: John Halley Gotway
Time: Wed Sep 16 13:22:39 2015
Susana,
I recompiled GSL-1.16 using the -O0 option just as you did, and then
recompiled MET. It all worked fine, but I am using the GNU compilers
rather than the Intel ones.
It looks like all your paths are correct, but I'm guessing the linker
is
skipping the GSL-1.16 library you're using for some reason. One way
to
check this theory is to print out the linker map. Try this...
cd /home/susana/software/met-5.0
make clean
export CC=`which icc`
export CXX=`which icc`
export F77=`which ifort`
export LDFLAGS='-Xlinker -M'
./configure --prefix=/home/susana/software/met-5.0
make install >& make_install.log
Running configure with that LDFLAGS setting tells the linker to print
it's
map. The output from make should increase from about 1500 lines to
over
300,000 lines.
Please send me the resulting make_install.log file.
Thanks,
John
On Wed, Sep 16, 2015 at 12:05 PM, Susana Cardoso Pereira via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
>
> Hello John
>
> Ok. That solution I've already tested. The only difference is that I
can
> only compile gsl with no optimization flags.
>
> These are the cmds that I used with gsl:
>
> make clean
> export CC=`which icc`
> export CXX=`which icc`
> export F77=`which ifort`
> ./configure CFLAGS="-O0" --prefix=/home/susana/software/gsl-1.16
> make
> make check > log 2>&1
> make install
>
>
> Susana
>
> On Wed, Sep 16, 2015 at 6:49 PM, John Halley Gotway via RT <
> met_help at ucar.edu> wrote:
>
> > Susana,
> >
> > I just successfully recompiled MET using GSL-1.16, so we should be
able
> to
> > make it work.
> >
> > Let's try recompiling GSL first...
> >
> > cd /home/susana/software/gsl-1.16
> > make clean
> > setenv CC `which icc`
> > ./configure --prefix=home/susana/software/gsl-1.16
> > make
> > make install
> >
> > And then recompile MET:
> >
> > cd /home/susana/software/met-5.0
> > make clean
> > make install >& make_install.log
> >
> > Please let me know how that goes.
> >
> > Thanks,
> > John
> >
> >
> >
> > On Wed, Sep 16, 2015 at 11:29 AM, Susana Cardoso Pereira via RT <
> > met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> > >
> > > Hi John,
> > >
> > > Susana
> > > Welcome abord. So, I've followed your instructions and I still
have
> > > issues with MET. I attach the config ant make install log files,
just
> in
> > > case.
> > >
> > > Thanks
> > >
> > > PS: I'm using gsl-1.16
> > >
> > > On Wed, Sep 16, 2015 at 4:45 PM, John Halley Gotway via RT <
> > > met_help at ucar.edu> wrote:
> > >
> > > > Hello Susana,
> > > >
> > > > My name is John Halley Gotway and I work with Julie. Thought
I'd
> jump
> > in
> > > > here with a suggestion. I think you should try recompiling
MET with
> > icc
> > > > instead of icpc. So please execute the following commands...
> > > >
> > > > cd /home/susana/software/met-5.0
> > > > make clean
> > > > export CC=`which icc`
> > > > export CXX=`which icc`
> > > > export F77=`which ifort`
> > > > ./configure --prefix=/home/susana/software/met-5.0
> > > > make install >& make_install.log
> > > >
> > > > Please let us know how it goes.
> > > >
> > > > Thanks,
> > > > John
> > > >
> > > > On Wed, Sep 16, 2015 at 4:11 AM, Susana Cardoso Pereira via RT
<
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> > > > >
> > > > > Hi Julie,
> > > > >
> > > > > I follow yours instructions: change de compiler from icpc to
icc
> > > (export
> > > > > CXX= icc) with gsl1.13 (btw I was using gsl1.16) and I've
still got
> > the
> > > > > same error. Two notes: I could only compile the gsl lib with
> > > CFLAGS="-O0"
> > > > > so I tried to compile the met with the same flags. The
result
> > remained
> > > a
> > > > > flop.
> > > > >
> > > > > So, it seems to me that the error might be, either in the
MET code
> or
> > > > > during the gsl's compile process with no optmization).
> > > > >
> > > > > My programming skills are low so, at this point, I would be
very
> > > grateful
> > > > > with your help before contacting the gsl's help services
(you told
> > me,
> > > in
> > > > > previous messages, that the gsl lib list of files seemed ok
- no
> lib
> > > > > missing).
> > > > >
> > > > > Wainting for your instructions,
> > > > >
> > > > > Susana
> > > > >
> > > > > On Tue, Sep 15, 2015 at 5:39 PM, Julie Prestopnik via RT <
> > > > > met_help at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > > Hi Susana.
> > > > > >
> > > > > > Thank you for sending all of the attachments! The library
and
> > > include
> > > > > > files that you have for gsl look good. I don't think there
are
> any
> > > > > missing
> > > > > > files.
> > > > > >
> > > > > > However, I see that you used "icc" to build GSL, but
"icpc" to
> > build
> > > > MET.
> > > > > > Please try using "icc" to build MET as well.
> > > > > >
> > > > > > So please use:
> > > > > >
> > > > > > setenv CXX /path/to/icc
> > > > > >
> > > > > > or
> > > > > >
> > > > > > export CXX=/path/to/icc
> > > > > >
> > > > > > depending on which shell you're using, replacing
"/path/to/icc"
> > with
> > > > the
> > > > > > full path to your icc compiler.
> > > > > >
> > > > > > Then run configure and make install again:
> > > > > >
> > > > > > ./configure --prefix=/home/susana/software/met-5.0
> > > > > > make install >& make_install.log &
> > > > > >
> > > > > > Please let me know if that helps solve the problem.
> > > > > >
> > > > > > Thanks,
> > > > > > Julie
> > > > > >
> > > > > > On Mon, Sep 14, 2015 at 4:07 AM, Susana Cardoso Pereira
via RT <
> > > > > > met_help at ucar.edu> wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> >
> > > > > > >
> > > > > > > Hi Julie,
> > > > > > >
> > > > > > > Sorry, for the late response but I've been out of the
office.
> > > Thanks
> > > > > for
> > > > > > > support you've been giving me. I really appreciate it.
> > > > > > > I've successfully installed the gsl-1.16 package but no
luck
> with
> > > the
> > > > > > > met-5. I still have the same error message during the
make
> > install
> > > > > step.
> > > > > > > Here's some notes on what I've done:
> > > > > > >
> > > > > > > 1 – gsl
> > > > > > > I had some trouble running the tests but solved it
changing the
> > > > CFLAGS
> > > > > > > (./configure CFLAGS="-O0" –prefix=`pwd`). I didn't get
any
> error
> > > > > message
> > > > > > > but can you check if there are missing some files in
the gsl
> > > lib/inc
> > > > > > > directory? I attatch the list of files in those dirs.
> > > > > > >
> > > > > > > 2 – met-5
> > > > > > > I fail to tell you that I've also download the met-5.0's
> patches.
> > > > > > > I've got the same mistake, during the make install step,
when
> > > trying
> > > > to
> > > > > > > compile with the gsl_wavelet (see attach)
> > > > > > >
> > > > > > > Can you help me?
> > > > > > >
> > > > > > > Thanks in advance.
> > > > > > >
> > > > > > > Susana
> > > > > > >
> > > > > > >
> > > > > > > On Wed, Sep 9, 2015 at 6:02 PM, Julie Prestopnik via RT
<
> > > > > > met_help at ucar.edu
> > > > > > > >
> > > > > > > wrote:
> > > > > > >
> > > > > > > > Hi Susana. I'm sorry that you are encountering
difficulties
> > with
> > > > > > > compiling
> > > > > > > > GSL. In the link I sent to you previously:
> > > > > > > >
> > > > > > > > http://www.gnu.org/software/gsl/
> > > > > > > >
> > > > > > > > I see there is an email address for help and a user's
mailing
> > > list:
> > > > > > > >
> > > > > > > > help-gsl at gnu.org
> > > > > > > > http://mail.gnu.org/mailman/listinfo/help-gsl
> > > > > > > >
> > > > > > > > I don't know what newer version you got, but it looks
like we
> > are
> > > > > using
> > > > > > > > gsl-1.13 here.
> > > > > > > >
> > > > > > > > Please let us know if we can help.
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Wed, Sep 9, 2015 at 2:06 AM, Susana Cardoso Pereira
via
> RT <
> > > > > > > > met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > <URL:
> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > >
> > > > > > > > >
> > > > > > > > > Hi Julia,
> > > > > > > > >
> > > > > > > > > Thanks for the support. It was great. I didn't say
anything
> > > > because
> > > > > > I'm
> > > > > > > > > trying to compile the gsl but I'm finding some
> difficulties.
> > > I'm
> > > > > not
> > > > > > > sure
> > > > > > > > > if there is an error or only a bug in running the
tests.
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > Thanks
> > > > > > > > > Susana
> > > > > > > > >
> > > > > > > > > On Tue, Sep 8, 2015 at 6:05 PM, Julie Prestopnik via
RT <
> > > > > > > > met_help at ucar.edu
> > > > > > > > > >
> > > > > > > > > wrote:
> > > > > > > > >
> > > > > > > > > > Hi Susana. I just wanted to follow up. Were you
able to
> > > > > compile a
> > > > > > > > more
> > > > > > > > > > recent version of GSL and then successfully
compile MET
> > > > > afterward?
> > > > > > > > > >
> > > > > > > > > > Thanks,
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Wed, Sep 2, 2015 at 10:12 AM, Julie Prestopnik
<
> > > > > > jpresto at ucar.edu>
> > > > > > > > > > wrote:
> > > > > > > > > >
> > > > > > > > > > > Hi Susana. I'm sorry that you're having trouble
> > compiling
> > > > MET.
> > > > > > > > Thank
> > > > > > > > > > you
> > > > > > > > > > > for attaching your config and make_install log
files
> and
> > > for
> > > > > > > checking
> > > > > > > > > the
> > > > > > > > > > > met_help archives.
> > > > > > > > > > >
> > > > > > > > > > > I see that you are using gsl-1.5.
Unfortunately, that
> > > older
> > > > > > > version
> > > > > > > > of
> > > > > > > > > > > the GSL software does not come with the wavelet
code
> that
> > > MET
> > > > > > > needs.
> > > > > > > > > > > Please download a more recent version of GSL:
> > > > > > > > > > >
> > > > > > > > > > > http://www.gnu.org/software/gsl/
> > > > > > > > > > >
> > > > > > > > > > > and compile that using the instructions here:
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > > > > > > > >
> > > > > > > > > > > Then, reconfigure and recompile MET. Please let
us
> know
> > if
> > > > you
> > > > > > > > > encounter
> > > > > > > > > > > any other issues or if that works for you.
> > > > > > > > > > >
> > > > > > > > > > > Thanks,
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > On Wed, Sep 2, 2015 at 3:25 AM, Susana Cardoso
Pereira
> > via
> > > > RT <
> > > > > > > > > > > met_help at ucar.edu> wrote:
> > > > > > > > > > >
> > > > > > > > > > >>
> > > > > > > > > > >> Wed Sep 02 03:25:39 2015: Request 73269 was
acted
> upon.
> > > > > > > > > > >> Transaction: Ticket created by
susana.cardoso at ua.pt
> > > > > > > > > > >> Queue: met_help
> > > > > > > > > > >> Subject: fail to compile MET5.0
> > > > > > > > > > >> Owner: Nobody
> > > > > > > > > > >> Requestors: susana.cardoso at ua.pt
> > > > > > > > > > >> Status: new
> > > > > > > > > > >> Ticket <URL:
> > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > > > > > > > >
> > > > > > > > > > >>
> > > > > > > > > > >>
> > > > > > > > > > >> Hi,
> > > > > > > > > > >> I've downloaded the MET 5 release but I'm
having
> trouble
> > > > > > compiling
> > > > > > > > > it. I
> > > > > > > > > > >> followed all of your instructions but fail to
see
> where
> > > the
> > > > > > > error's
> > > > > > > > > > origin
> > > > > > > > > > >> might be.
> > > > > > > > > > >> I attach the config and the make_install log
file. I
> > also
> > > > > > checked
> > > > > > > > all
> > > > > > > > > > the
> > > > > > > > > > >> met_help archives in an attempt to seek any
help but
> > with
> > > no
> > > > > > luck.
> > > > > > > > > > >>
> > > > > > > > > > >> Thanks in advance
> > > > > > > > > > >>
> > > > > > > > > > >> Susana
> > > > > > > > > > >>
> > > > > > > > > > >>
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > --
> > > > > > > > > > > Julie Prestopnik
> > > > > > > > > > > National Center for Atmospheric Research
> > > > > > > > > > > Research Applications Laboratory
> > > > > > > > > > > Phone: 303.497.8399
> > > > > > > > > > > Email: jpresto at ucar.edu
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > --
> > > > > > > > > > Julie Prestopnik
> > > > > > > > > > National Center for Atmospheric Research
> > > > > > > > > > Research Applications Laboratory
> > > > > > > > > > Phone: 303.497.8399
> > > > > > > > > > Email: jpresto at ucar.edu
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > --
> > > > > > > > Julie Prestopnik
> > > > > > > > National Center for Atmospheric Research
> > > > > > > > Research Applications Laboratory
> > > > > > > > Phone: 303.497.8399
> > > > > > > > Email: jpresto at ucar.edu
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > > > --
> > > > > > Julie Prestopnik
> > > > > > National Center for Atmospheric Research
> > > > > > Research Applications Laboratory
> > > > > > Phone: 303.497.8399
> > > > > > Email: jpresto at ucar.edu
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: fail to compile MET5.0
From: Susana Cardoso Pereira
Time: Wed Sep 16 13:48:11 2015
Hi Jonh,
Thank you so much for your prompt response. I will implemented it and
let
you know the news.
Susana
On Wed, Sep 16, 2015 at 8:22 PM, John Halley Gotway via RT <
met_help at ucar.edu> wrote:
> Susana,
>
> I recompiled GSL-1.16 using the -O0 option just as you did, and then
> recompiled MET. It all worked fine, but I am using the GNU
compilers
> rather than the Intel ones.
>
> It looks like all your paths are correct, but I'm guessing the
linker is
> skipping the GSL-1.16 library you're using for some reason. One way
to
> check this theory is to print out the linker map. Try this...
>
> cd /home/susana/software/met-5.0
> make clean
> export CC=`which icc`
> export CXX=`which icc`
> export F77=`which ifort`
> export LDFLAGS='-Xlinker -M'
> ./configure --prefix=/home/susana/software/met-5.0
> make install >& make_install.log
>
> Running configure with that LDFLAGS setting tells the linker to
print it's
> map. The output from make should increase from about 1500 lines to
over
> 300,000 lines.
>
> Please send me the resulting make_install.log file.
>
> Thanks,
> John
>
>
> On Wed, Sep 16, 2015 at 12:05 PM, Susana Cardoso Pereira via RT <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> >
> > Hello John
> >
> > Ok. That solution I've already tested. The only difference is that
I can
> > only compile gsl with no optimization flags.
> >
> > These are the cmds that I used with gsl:
> >
> > make clean
> > export CC=`which icc`
> > export CXX=`which icc`
> > export F77=`which ifort`
> > ./configure CFLAGS="-O0" --prefix=/home/susana/software/gsl-
1.16
> > make
> > make check > log 2>&1
> > make install
> >
> >
> > Susana
> >
> > On Wed, Sep 16, 2015 at 6:49 PM, John Halley Gotway via RT <
> > met_help at ucar.edu> wrote:
> >
> > > Susana,
> > >
> > > I just successfully recompiled MET using GSL-1.16, so we should
be able
> > to
> > > make it work.
> > >
> > > Let's try recompiling GSL first...
> > >
> > > cd /home/susana/software/gsl-1.16
> > > make clean
> > > setenv CC `which icc`
> > > ./configure --prefix=home/susana/software/gsl-1.16
> > > make
> > > make install
> > >
> > > And then recompile MET:
> > >
> > > cd /home/susana/software/met-5.0
> > > make clean
> > > make install >& make_install.log
> > >
> > > Please let me know how that goes.
> > >
> > > Thanks,
> > > John
> > >
> > >
> > >
> > > On Wed, Sep 16, 2015 at 11:29 AM, Susana Cardoso Pereira via RT
<
> > > met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
>
> > > >
> > > > Hi John,
> > > >
> > > > Susana
> > > > Welcome abord. So, I've followed your instructions and I
still have
> > > > issues with MET. I attach the config ant make install log
files, just
> > in
> > > > case.
> > > >
> > > > Thanks
> > > >
> > > > PS: I'm using gsl-1.16
> > > >
> > > > On Wed, Sep 16, 2015 at 4:45 PM, John Halley Gotway via RT <
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > > Hello Susana,
> > > > >
> > > > > My name is John Halley Gotway and I work with Julie.
Thought I'd
> > jump
> > > in
> > > > > here with a suggestion. I think you should try recompiling
MET
> with
> > > icc
> > > > > instead of icpc. So please execute the following
commands...
> > > > >
> > > > > cd /home/susana/software/met-5.0
> > > > > make clean
> > > > > export CC=`which icc`
> > > > > export CXX=`which icc`
> > > > > export F77=`which ifort`
> > > > > ./configure --prefix=/home/susana/software/met-5.0
> > > > > make install >& make_install.log
> > > > >
> > > > > Please let us know how it goes.
> > > > >
> > > > > Thanks,
> > > > > John
> > > > >
> > > > > On Wed, Sep 16, 2015 at 4:11 AM, Susana Cardoso Pereira via
RT <
> > > > > met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> > > > > >
> > > > > > Hi Julie,
> > > > > >
> > > > > > I follow yours instructions: change de compiler from icpc
to icc
> > > > (export
> > > > > > CXX= icc) with gsl1.13 (btw I was using gsl1.16) and I've
still
> got
> > > the
> > > > > > same error. Two notes: I could only compile the gsl lib
with
> > > > CFLAGS="-O0"
> > > > > > so I tried to compile the met with the same flags. The
result
> > > remained
> > > > a
> > > > > > flop.
> > > > > >
> > > > > > So, it seems to me that the error might be, either in the
MET
> code
> > or
> > > > > > during the gsl's compile process with no optmization).
> > > > > >
> > > > > > My programming skills are low so, at this point, I would
be very
> > > > grateful
> > > > > > with your help before contacting the gsl's help services
(you
> told
> > > me,
> > > > in
> > > > > > previous messages, that the gsl lib list of files seemed
ok - no
> > lib
> > > > > > missing).
> > > > > >
> > > > > > Wainting for your instructions,
> > > > > >
> > > > > > Susana
> > > > > >
> > > > > > On Tue, Sep 15, 2015 at 5:39 PM, Julie Prestopnik via RT <
> > > > > > met_help at ucar.edu>
> > > > > > wrote:
> > > > > >
> > > > > > > Hi Susana.
> > > > > > >
> > > > > > > Thank you for sending all of the attachments! The
library and
> > > > include
> > > > > > > files that you have for gsl look good. I don't think
there are
> > any
> > > > > > missing
> > > > > > > files.
> > > > > > >
> > > > > > > However, I see that you used "icc" to build GSL, but
"icpc" to
> > > build
> > > > > MET.
> > > > > > > Please try using "icc" to build MET as well.
> > > > > > >
> > > > > > > So please use:
> > > > > > >
> > > > > > > setenv CXX /path/to/icc
> > > > > > >
> > > > > > > or
> > > > > > >
> > > > > > > export CXX=/path/to/icc
> > > > > > >
> > > > > > > depending on which shell you're using, replacing
"/path/to/icc"
> > > with
> > > > > the
> > > > > > > full path to your icc compiler.
> > > > > > >
> > > > > > > Then run configure and make install again:
> > > > > > >
> > > > > > > ./configure --prefix=/home/susana/software/met-5.0
> > > > > > > make install >& make_install.log &
> > > > > > >
> > > > > > > Please let me know if that helps solve the problem.
> > > > > > >
> > > > > > > Thanks,
> > > > > > > Julie
> > > > > > >
> > > > > > > On Mon, Sep 14, 2015 at 4:07 AM, Susana Cardoso Pereira
via RT
> <
> > > > > > > met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > <URL:
> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > >
> > > > > > > >
> > > > > > > > Hi Julie,
> > > > > > > >
> > > > > > > > Sorry, for the late response but I've been out of the
office.
> > > > Thanks
> > > > > > for
> > > > > > > > support you've been giving me. I really appreciate it.
> > > > > > > > I've successfully installed the gsl-1.16 package but
no luck
> > with
> > > > the
> > > > > > > > met-5. I still have the same error message during the
make
> > > install
> > > > > > step.
> > > > > > > > Here's some notes on what I've done:
> > > > > > > >
> > > > > > > > 1 – gsl
> > > > > > > > I had some trouble running the tests but solved it
changing
> the
> > > > > CFLAGS
> > > > > > > > (./configure CFLAGS="-O0" –prefix=`pwd`). I didn't get
any
> > error
> > > > > > message
> > > > > > > > but can you check if there are missing some files in
the gsl
> > > > lib/inc
> > > > > > > > directory? I attatch the list of files in those dirs.
> > > > > > > >
> > > > > > > > 2 – met-5
> > > > > > > > I fail to tell you that I've also download the met-
5.0's
> > patches.
> > > > > > > > I've got the same mistake, during the make install
step, when
> > > > trying
> > > > > to
> > > > > > > > compile with the gsl_wavelet (see attach)
> > > > > > > >
> > > > > > > > Can you help me?
> > > > > > > >
> > > > > > > > Thanks in advance.
> > > > > > > >
> > > > > > > > Susana
> > > > > > > >
> > > > > > > >
> > > > > > > > On Wed, Sep 9, 2015 at 6:02 PM, Julie Prestopnik via
RT <
> > > > > > > met_help at ucar.edu
> > > > > > > > >
> > > > > > > > wrote:
> > > > > > > >
> > > > > > > > > Hi Susana. I'm sorry that you are encountering
> difficulties
> > > with
> > > > > > > > compiling
> > > > > > > > > GSL. In the link I sent to you previously:
> > > > > > > > >
> > > > > > > > > http://www.gnu.org/software/gsl/
> > > > > > > > >
> > > > > > > > > I see there is an email address for help and a
user's
> mailing
> > > > list:
> > > > > > > > >
> > > > > > > > > help-gsl at gnu.org
> > > > > > > > > http://mail.gnu.org/mailman/listinfo/help-gsl
> > > > > > > > >
> > > > > > > > > I don't know what newer version you got, but it
looks like
> we
> > > are
> > > > > > using
> > > > > > > > > gsl-1.13 here.
> > > > > > > > >
> > > > > > > > > Please let us know if we can help.
> > > > > > > > >
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Wed, Sep 9, 2015 at 2:06 AM, Susana Cardoso
Pereira via
> > RT <
> > > > > > > > > met_help at ucar.edu> wrote:
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <URL:
> > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > > >
> > > > > > > > > >
> > > > > > > > > > Hi Julia,
> > > > > > > > > >
> > > > > > > > > > Thanks for the support. It was great. I didn't say
> anything
> > > > > because
> > > > > > > I'm
> > > > > > > > > > trying to compile the gsl but I'm finding some
> > difficulties.
> > > > I'm
> > > > > > not
> > > > > > > > sure
> > > > > > > > > > if there is an error or only a bug in running the
tests.
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > Thanks
> > > > > > > > > > Susana
> > > > > > > > > >
> > > > > > > > > > On Tue, Sep 8, 2015 at 6:05 PM, Julie Prestopnik
via RT <
> > > > > > > > > met_help at ucar.edu
> > > > > > > > > > >
> > > > > > > > > > wrote:
> > > > > > > > > >
> > > > > > > > > > > Hi Susana. I just wanted to follow up. Were
you able
> to
> > > > > > compile a
> > > > > > > > > more
> > > > > > > > > > > recent version of GSL and then successfully
compile MET
> > > > > > afterward?
> > > > > > > > > > >
> > > > > > > > > > > Thanks,
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > > On Wed, Sep 2, 2015 at 10:12 AM, Julie
Prestopnik <
> > > > > > > jpresto at ucar.edu>
> > > > > > > > > > > wrote:
> > > > > > > > > > >
> > > > > > > > > > > > Hi Susana. I'm sorry that you're having
trouble
> > > compiling
> > > > > MET.
> > > > > > > > > Thank
> > > > > > > > > > > you
> > > > > > > > > > > > for attaching your config and make_install log
files
> > and
> > > > for
> > > > > > > > checking
> > > > > > > > > > the
> > > > > > > > > > > > met_help archives.
> > > > > > > > > > > >
> > > > > > > > > > > > I see that you are using gsl-1.5.
Unfortunately,
> that
> > > > older
> > > > > > > > version
> > > > > > > > > of
> > > > > > > > > > > > the GSL software does not come with the
wavelet code
> > that
> > > > MET
> > > > > > > > needs.
> > > > > > > > > > > > Please download a more recent version of GSL:
> > > > > > > > > > > >
> > > > > > > > > > > > http://www.gnu.org/software/gsl/
> > > > > > > > > > > >
> > > > > > > > > > > > and compile that using the instructions here:
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > > > > > > > > >
> > > > > > > > > > > > Then, reconfigure and recompile MET. Please
let us
> > know
> > > if
> > > > > you
> > > > > > > > > > encounter
> > > > > > > > > > > > any other issues or if that works for you.
> > > > > > > > > > > >
> > > > > > > > > > > > Thanks,
> > > > > > > > > > > > Julie
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > On Wed, Sep 2, 2015 at 3:25 AM, Susana Cardoso
> Pereira
> > > via
> > > > > RT <
> > > > > > > > > > > > met_help at ucar.edu> wrote:
> > > > > > > > > > > >
> > > > > > > > > > > >>
> > > > > > > > > > > >> Wed Sep 02 03:25:39 2015: Request 73269 was
acted
> > upon.
> > > > > > > > > > > >> Transaction: Ticket created by
susana.cardoso at ua.pt
> > > > > > > > > > > >> Queue: met_help
> > > > > > > > > > > >> Subject: fail to compile MET5.0
> > > > > > > > > > > >> Owner: Nobody
> > > > > > > > > > > >> Requestors: susana.cardoso at ua.pt
> > > > > > > > > > > >> Status: new
> > > > > > > > > > > >> Ticket <URL:
> > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > > > > > > > > >
> > > > > > > > > > > >>
> > > > > > > > > > > >>
> > > > > > > > > > > >> Hi,
> > > > > > > > > > > >> I've downloaded the MET 5 release but I'm
having
> > trouble
> > > > > > > compiling
> > > > > > > > > > it. I
> > > > > > > > > > > >> followed all of your instructions but fail to
see
> > where
> > > > the
> > > > > > > > error's
> > > > > > > > > > > origin
> > > > > > > > > > > >> might be.
> > > > > > > > > > > >> I attach the config and the make_install log
file. I
> > > also
> > > > > > > checked
> > > > > > > > > all
> > > > > > > > > > > the
> > > > > > > > > > > >> met_help archives in an attempt to seek any
help but
> > > with
> > > > no
> > > > > > > luck.
> > > > > > > > > > > >>
> > > > > > > > > > > >> Thanks in advance
> > > > > > > > > > > >>
> > > > > > > > > > > >> Susana
> > > > > > > > > > > >>
> > > > > > > > > > > >>
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > --
> > > > > > > > > > > > Julie Prestopnik
> > > > > > > > > > > > National Center for Atmospheric Research
> > > > > > > > > > > > Research Applications Laboratory
> > > > > > > > > > > > Phone: 303.497.8399
> > > > > > > > > > > > Email: jpresto at ucar.edu
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > --
> > > > > > > > > > > Julie Prestopnik
> > > > > > > > > > > National Center for Atmospheric Research
> > > > > > > > > > > Research Applications Laboratory
> > > > > > > > > > > Phone: 303.497.8399
> > > > > > > > > > > Email: jpresto at ucar.edu
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > --
> > > > > > > > > Julie Prestopnik
> > > > > > > > > National Center for Atmospheric Research
> > > > > > > > > Research Applications Laboratory
> > > > > > > > > Phone: 303.497.8399
> > > > > > > > > Email: jpresto at ucar.edu
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > --
> > > > > > > Julie Prestopnik
> > > > > > > National Center for Atmospheric Research
> > > > > > > Research Applications Laboratory
> > > > > > > Phone: 303.497.8399
> > > > > > > Email: jpresto at ucar.edu
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: fail to compile MET5.0
From: Susana Cardoso Pereira
Time: Thu Sep 17 06:31:12 2015
Hello,
Now the files as a tarball.
Susana
On Thu, Sep 17, 2015 at 1:08 PM, Susana Cardoso Pereira <
susana.cardoso at ua.pt> wrote:
> Hello John,
>
> Here are the files that you asked after yours instructions.
>
> Susana
>
> On Wed, Sep 16, 2015 at 8:47 PM, Susana Cardoso Pereira <
> susana.cardoso at ua.pt> wrote:
>
>> Hi Jonh,
>>
>>
>> Thank you so much for your prompt response. I will implemented it
and let
>> you know the news.
>>
>> Susana
>>
>>
>> On Wed, Sep 16, 2015 at 8:22 PM, John Halley Gotway via RT <
>> met_help at ucar.edu> wrote:
>>
>>> Susana,
>>>
>>> I recompiled GSL-1.16 using the -O0 option just as you did, and
then
>>> recompiled MET. It all worked fine, but I am using the GNU
compilers
>>> rather than the Intel ones.
>>>
>>> It looks like all your paths are correct, but I'm guessing the
linker is
>>> skipping the GSL-1.16 library you're using for some reason. One
way to
>>> check this theory is to print out the linker map. Try this...
>>>
>>> cd /home/susana/software/met-5.0
>>> make clean
>>> export CC=`which icc`
>>> export CXX=`which icc`
>>> export F77=`which ifort`
>>> export LDFLAGS='-Xlinker -M'
>>> ./configure --prefix=/home/susana/software/met-5.0
>>> make install >& make_install.log
>>>
>>> Running configure with that LDFLAGS setting tells the linker to
print
>>> it's
>>> map. The output from make should increase from about 1500 lines
to over
>>> 300,000 lines.
>>>
>>> Please send me the resulting make_install.log file.
>>>
>>> Thanks,
>>> John
>>>
>>>
>>> On Wed, Sep 16, 2015 at 12:05 PM, Susana Cardoso Pereira via RT <
>>> met_help at ucar.edu> wrote:
>>>
>>> >
>>> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
>>> >
>>> > Hello John
>>> >
>>> > Ok. That solution I've already tested. The only difference is
that I
>>> can
>>> > only compile gsl with no optimization flags.
>>> >
>>> > These are the cmds that I used with gsl:
>>> >
>>> > make clean
>>> > export CC=`which icc`
>>> > export CXX=`which icc`
>>> > export F77=`which ifort`
>>> > ./configure CFLAGS="-O0" --prefix=/home/susana/software/gsl-
1.16
>>> > make
>>> > make check > log 2>&1
>>> > make install
>>> >
>>> >
>>> > Susana
>>> >
>>> > On Wed, Sep 16, 2015 at 6:49 PM, John Halley Gotway via RT <
>>> > met_help at ucar.edu> wrote:
>>> >
>>> > > Susana,
>>> > >
>>> > > I just successfully recompiled MET using GSL-1.16, so we
should be
>>> able
>>> > to
>>> > > make it work.
>>> > >
>>> > > Let's try recompiling GSL first...
>>> > >
>>> > > cd /home/susana/software/gsl-1.16
>>> > > make clean
>>> > > setenv CC `which icc`
>>> > > ./configure --prefix=home/susana/software/gsl-1.16
>>> > > make
>>> > > make install
>>> > >
>>> > > And then recompile MET:
>>> > >
>>> > > cd /home/susana/software/met-5.0
>>> > > make clean
>>> > > make install >& make_install.log
>>> > >
>>> > > Please let me know how that goes.
>>> > >
>>> > > Thanks,
>>> > > John
>>> > >
>>> > >
>>> > >
>>> > > On Wed, Sep 16, 2015 at 11:29 AM, Susana Cardoso Pereira via
RT <
>>> > > met_help at ucar.edu> wrote:
>>> > >
>>> > > >
>>> > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
>>> > > >
>>> > > > Hi John,
>>> > > >
>>> > > > Susana
>>> > > > Welcome abord. So, I've followed your instructions and I
still
>>> have
>>> > > > issues with MET. I attach the config ant make install log
files,
>>> just
>>> > in
>>> > > > case.
>>> > > >
>>> > > > Thanks
>>> > > >
>>> > > > PS: I'm using gsl-1.16
>>> > > >
>>> > > > On Wed, Sep 16, 2015 at 4:45 PM, John Halley Gotway via RT <
>>> > > > met_help at ucar.edu> wrote:
>>> > > >
>>> > > > > Hello Susana,
>>> > > > >
>>> > > > > My name is John Halley Gotway and I work with Julie.
Thought I'd
>>> > jump
>>> > > in
>>> > > > > here with a suggestion. I think you should try
recompiling MET
>>> with
>>> > > icc
>>> > > > > instead of icpc. So please execute the following
commands...
>>> > > > >
>>> > > > > cd /home/susana/software/met-5.0
>>> > > > > make clean
>>> > > > > export CC=`which icc`
>>> > > > > export CXX=`which icc`
>>> > > > > export F77=`which ifort`
>>> > > > > ./configure --prefix=/home/susana/software/met-5.0
>>> > > > > make install >& make_install.log
>>> > > > >
>>> > > > > Please let us know how it goes.
>>> > > > >
>>> > > > > Thanks,
>>> > > > > John
>>> > > > >
>>> > > > > On Wed, Sep 16, 2015 at 4:11 AM, Susana Cardoso Pereira
via RT <
>>> > > > > met_help at ucar.edu> wrote:
>>> > > > >
>>> > > > > >
>>> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
>>> >
>>> > > > > >
>>> > > > > > Hi Julie,
>>> > > > > >
>>> > > > > > I follow yours instructions: change de compiler from
icpc to
>>> icc
>>> > > > (export
>>> > > > > > CXX= icc) with gsl1.13 (btw I was using gsl1.16) and
I've
>>> still got
>>> > > the
>>> > > > > > same error. Two notes: I could only compile the gsl lib
with
>>> > > > CFLAGS="-O0"
>>> > > > > > so I tried to compile the met with the same flags. The
result
>>> > > remained
>>> > > > a
>>> > > > > > flop.
>>> > > > > >
>>> > > > > > So, it seems to me that the error might be, either in
the MET
>>> code
>>> > or
>>> > > > > > during the gsl's compile process with no optmization).
>>> > > > > >
>>> > > > > > My programming skills are low so, at this point, I would
be
>>> very
>>> > > > grateful
>>> > > > > > with your help before contacting the gsl's help services
(you
>>> told
>>> > > me,
>>> > > > in
>>> > > > > > previous messages, that the gsl lib list of files seemed
ok -
>>> no
>>> > lib
>>> > > > > > missing).
>>> > > > > >
>>> > > > > > Wainting for your instructions,
>>> > > > > >
>>> > > > > > Susana
>>> > > > > >
>>> > > > > > On Tue, Sep 15, 2015 at 5:39 PM, Julie Prestopnik via RT
<
>>> > > > > > met_help at ucar.edu>
>>> > > > > > wrote:
>>> > > > > >
>>> > > > > > > Hi Susana.
>>> > > > > > >
>>> > > > > > > Thank you for sending all of the attachments! The
library
>>> and
>>> > > > include
>>> > > > > > > files that you have for gsl look good. I don't think
there
>>> are
>>> > any
>>> > > > > > missing
>>> > > > > > > files.
>>> > > > > > >
>>> > > > > > > However, I see that you used "icc" to build GSL, but
"icpc"
>>> to
>>> > > build
>>> > > > > MET.
>>> > > > > > > Please try using "icc" to build MET as well.
>>> > > > > > >
>>> > > > > > > So please use:
>>> > > > > > >
>>> > > > > > > setenv CXX /path/to/icc
>>> > > > > > >
>>> > > > > > > or
>>> > > > > > >
>>> > > > > > > export CXX=/path/to/icc
>>> > > > > > >
>>> > > > > > > depending on which shell you're using, replacing
>>> "/path/to/icc"
>>> > > with
>>> > > > > the
>>> > > > > > > full path to your icc compiler.
>>> > > > > > >
>>> > > > > > > Then run configure and make install again:
>>> > > > > > >
>>> > > > > > > ./configure --prefix=/home/susana/software/met-5.0
>>> > > > > > > make install >& make_install.log &
>>> > > > > > >
>>> > > > > > > Please let me know if that helps solve the problem.
>>> > > > > > >
>>> > > > > > > Thanks,
>>> > > > > > > Julie
>>> > > > > > >
>>> > > > > > > On Mon, Sep 14, 2015 at 4:07 AM, Susana Cardoso
Pereira via
>>> RT <
>>> > > > > > > met_help at ucar.edu> wrote:
>>> > > > > > >
>>> > > > > > > >
>>> > > > > > > > <URL:
>>> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
>>> > >
>>> > > > > > > >
>>> > > > > > > > Hi Julie,
>>> > > > > > > >
>>> > > > > > > > Sorry, for the late response but I've been out of
the
>>> office.
>>> > > > Thanks
>>> > > > > > for
>>> > > > > > > > support you've been giving me. I really appreciate
it.
>>> > > > > > > > I've successfully installed the gsl-1.16 package but
no
>>> luck
>>> > with
>>> > > > the
>>> > > > > > > > met-5. I still have the same error message during
the make
>>> > > install
>>> > > > > > step.
>>> > > > > > > > Here's some notes on what I've done:
>>> > > > > > > >
>>> > > > > > > > 1 – gsl
>>> > > > > > > > I had some trouble running the tests but solved it
>>> changing the
>>> > > > > CFLAGS
>>> > > > > > > > (./configure CFLAGS="-O0" –prefix=`pwd`). I didn't
get any
>>> > error
>>> > > > > > message
>>> > > > > > > > but can you check if there are missing some files
in the
>>> gsl
>>> > > > lib/inc
>>> > > > > > > > directory? I attatch the list of files in those
dirs.
>>> > > > > > > >
>>> > > > > > > > 2 – met-5
>>> > > > > > > > I fail to tell you that I've also download the met-
5.0's
>>> > patches.
>>> > > > > > > > I've got the same mistake, during the make install
step,
>>> when
>>> > > > trying
>>> > > > > to
>>> > > > > > > > compile with the gsl_wavelet (see attach)
>>> > > > > > > >
>>> > > > > > > > Can you help me?
>>> > > > > > > >
>>> > > > > > > > Thanks in advance.
>>> > > > > > > >
>>> > > > > > > > Susana
>>> > > > > > > >
>>> > > > > > > >
>>> > > > > > > > On Wed, Sep 9, 2015 at 6:02 PM, Julie Prestopnik via
RT <
>>> > > > > > > met_help at ucar.edu
>>> > > > > > > > >
>>> > > > > > > > wrote:
>>> > > > > > > >
>>> > > > > > > > > Hi Susana. I'm sorry that you are encountering
>>> difficulties
>>> > > with
>>> > > > > > > > compiling
>>> > > > > > > > > GSL. In the link I sent to you previously:
>>> > > > > > > > >
>>> > > > > > > > > http://www.gnu.org/software/gsl/
>>> > > > > > > > >
>>> > > > > > > > > I see there is an email address for help and a
user's
>>> mailing
>>> > > > list:
>>> > > > > > > > >
>>> > > > > > > > > help-gsl at gnu.org
>>> > > > > > > > > http://mail.gnu.org/mailman/listinfo/help-gsl
>>> > > > > > > > >
>>> > > > > > > > > I don't know what newer version you got, but it
looks
>>> like we
>>> > > are
>>> > > > > > using
>>> > > > > > > > > gsl-1.13 here.
>>> > > > > > > > >
>>> > > > > > > > > Please let us know if we can help.
>>> > > > > > > > >
>>> > > > > > > > > Julie
>>> > > > > > > > >
>>> > > > > > > > > On Wed, Sep 9, 2015 at 2:06 AM, Susana Cardoso
Pereira
>>> via
>>> > RT <
>>> > > > > > > > > met_help at ucar.edu> wrote:
>>> > > > > > > > >
>>> > > > > > > > > >
>>> > > > > > > > > > <URL:
>>> > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
>>> > > > >
>>> > > > > > > > > >
>>> > > > > > > > > > Hi Julia,
>>> > > > > > > > > >
>>> > > > > > > > > > Thanks for the support. It was great. I didn't
say
>>> anything
>>> > > > > because
>>> > > > > > > I'm
>>> > > > > > > > > > trying to compile the gsl but I'm finding some
>>> > difficulties.
>>> > > > I'm
>>> > > > > > not
>>> > > > > > > > sure
>>> > > > > > > > > > if there is an error or only a bug in running
the
>>> tests.
>>> > > > > > > > > >
>>> > > > > > > > > >
>>> > > > > > > > > > Thanks
>>> > > > > > > > > > Susana
>>> > > > > > > > > >
>>> > > > > > > > > > On Tue, Sep 8, 2015 at 6:05 PM, Julie Prestopnik
via
>>> RT <
>>> > > > > > > > > met_help at ucar.edu
>>> > > > > > > > > > >
>>> > > > > > > > > > wrote:
>>> > > > > > > > > >
>>> > > > > > > > > > > Hi Susana. I just wanted to follow up. Were
you
>>> able to
>>> > > > > > compile a
>>> > > > > > > > > more
>>> > > > > > > > > > > recent version of GSL and then successfully
compile
>>> MET
>>> > > > > > afterward?
>>> > > > > > > > > > >
>>> > > > > > > > > > > Thanks,
>>> > > > > > > > > > > Julie
>>> > > > > > > > > > >
>>> > > > > > > > > > > On Wed, Sep 2, 2015 at 10:12 AM, Julie
Prestopnik <
>>> > > > > > > jpresto at ucar.edu>
>>> > > > > > > > > > > wrote:
>>> > > > > > > > > > >
>>> > > > > > > > > > > > Hi Susana. I'm sorry that you're having
trouble
>>> > > compiling
>>> > > > > MET.
>>> > > > > > > > > Thank
>>> > > > > > > > > > > you
>>> > > > > > > > > > > > for attaching your config and make_install
log
>>> files
>>> > and
>>> > > > for
>>> > > > > > > > checking
>>> > > > > > > > > > the
>>> > > > > > > > > > > > met_help archives.
>>> > > > > > > > > > > >
>>> > > > > > > > > > > > I see that you are using gsl-1.5.
Unfortunately,
>>> that
>>> > > > older
>>> > > > > > > > version
>>> > > > > > > > > of
>>> > > > > > > > > > > > the GSL software does not come with the
wavelet
>>> code
>>> > that
>>> > > > MET
>>> > > > > > > > needs.
>>> > > > > > > > > > > > Please download a more recent version of
GSL:
>>> > > > > > > > > > > >
>>> > > > > > > > > > > > http://www.gnu.org/software/gsl/
>>> > > > > > > > > > > >
>>> > > > > > > > > > > > and compile that using the instructions
here:
>>> > > > > > > > > > > >
>>> > > > > > > > > > > >
>>> > > > > > > > > > > >
>>> > > > > > > > > > >
>>> > > > > > > > > >
>>> > > > > > > > >
>>> > > > > > > >
>>> > > > > > >
>>> > > > > >
>>> > > > >
>>> > > >
>>> > >
>>> >
>>>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
>>> > > > > > > > > > > >
>>> > > > > > > > > > > > Then, reconfigure and recompile MET. Please
let us
>>> > know
>>> > > if
>>> > > > > you
>>> > > > > > > > > > encounter
>>> > > > > > > > > > > > any other issues or if that works for you.
>>> > > > > > > > > > > >
>>> > > > > > > > > > > > Thanks,
>>> > > > > > > > > > > > Julie
>>> > > > > > > > > > > >
>>> > > > > > > > > > > >
>>> > > > > > > > > > > > On Wed, Sep 2, 2015 at 3:25 AM, Susana
Cardoso
>>> Pereira
>>> > > via
>>> > > > > RT <
>>> > > > > > > > > > > > met_help at ucar.edu> wrote:
>>> > > > > > > > > > > >
>>> > > > > > > > > > > >>
>>> > > > > > > > > > > >> Wed Sep 02 03:25:39 2015: Request 73269 was
acted
>>> > upon.
>>> > > > > > > > > > > >> Transaction: Ticket created by
>>> susana.cardoso at ua.pt
>>> > > > > > > > > > > >> Queue: met_help
>>> > > > > > > > > > > >> Subject: fail to compile MET5.0
>>> > > > > > > > > > > >> Owner: Nobody
>>> > > > > > > > > > > >> Requestors: susana.cardoso at ua.pt
>>> > > > > > > > > > > >> Status: new
>>> > > > > > > > > > > >> Ticket <URL:
>>> > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
>>> > > > > > > > > > >
>>> > > > > > > > > > > >>
>>> > > > > > > > > > > >>
>>> > > > > > > > > > > >> Hi,
>>> > > > > > > > > > > >> I've downloaded the MET 5 release but I'm
having
>>> > trouble
>>> > > > > > > compiling
>>> > > > > > > > > > it. I
>>> > > > > > > > > > > >> followed all of your instructions but fail
to see
>>> > where
>>> > > > the
>>> > > > > > > > error's
>>> > > > > > > > > > > origin
>>> > > > > > > > > > > >> might be.
>>> > > > > > > > > > > >> I attach the config and the make_install
log
>>> file. I
>>> > > also
>>> > > > > > > checked
>>> > > > > > > > > all
>>> > > > > > > > > > > the
>>> > > > > > > > > > > >> met_help archives in an attempt to seek any
help
>>> but
>>> > > with
>>> > > > no
>>> > > > > > > luck.
>>> > > > > > > > > > > >>
>>> > > > > > > > > > > >> Thanks in advance
>>> > > > > > > > > > > >>
>>> > > > > > > > > > > >> Susana
>>> > > > > > > > > > > >>
>>> > > > > > > > > > > >>
>>> > > > > > > > > > > >
>>> > > > > > > > > > > >
>>> > > > > > > > > > > > --
>>> > > > > > > > > > > > Julie Prestopnik
>>> > > > > > > > > > > > National Center for Atmospheric Research
>>> > > > > > > > > > > > Research Applications Laboratory
>>> > > > > > > > > > > > Phone: 303.497.8399
>>> > > > > > > > > > > > Email: jpresto at ucar.edu
>>> > > > > > > > > > > >
>>> > > > > > > > > > >
>>> > > > > > > > > > >
>>> > > > > > > > > > >
>>> > > > > > > > > > > --
>>> > > > > > > > > > > Julie Prestopnik
>>> > > > > > > > > > > National Center for Atmospheric Research
>>> > > > > > > > > > > Research Applications Laboratory
>>> > > > > > > > > > > Phone: 303.497.8399
>>> > > > > > > > > > > Email: jpresto at ucar.edu
>>> > > > > > > > > > >
>>> > > > > > > > > > >
>>> > > > > > > > > >
>>> > > > > > > > > >
>>> > > > > > > > >
>>> > > > > > > > >
>>> > > > > > > > > --
>>> > > > > > > > > Julie Prestopnik
>>> > > > > > > > > National Center for Atmospheric Research
>>> > > > > > > > > Research Applications Laboratory
>>> > > > > > > > > Phone: 303.497.8399
>>> > > > > > > > > Email: jpresto at ucar.edu
>>> > > > > > > > >
>>> > > > > > > > >
>>> > > > > > > >
>>> > > > > > > >
>>> > > > > > >
>>> > > > > > >
>>> > > > > > > --
>>> > > > > > > Julie Prestopnik
>>> > > > > > > National Center for Atmospheric Research
>>> > > > > > > Research Applications Laboratory
>>> > > > > > > Phone: 303.497.8399
>>> > > > > > > Email: jpresto at ucar.edu
>>> > > > > > >
>>> > > > > > >
>>> > > > > >
>>> > > > > >
>>> > > > >
>>> > > > >
>>> > > >
>>> > > >
>>> > >
>>> > >
>>> >
>>> >
>>>
>>>
>>
>
------------------------------------------------
Subject: fail to compile MET5.0
From: Julie Prestopnik
Time: Fri Sep 18 16:13:19 2015
Hi Susana.
Thank you for sending along the output. Unfortunately, I wasn't able
to
determine what the problem is from the output you sent. John
mentioned
that he was able to compile GSL-1.16 using the -O0 option as you did
and
then recompile MET successfully, but with the GNU compilers. Today I
was
able to successfully compile GSL-1.16 and then recompile MET using the
Intel compilers.
Since we are not able to recreate the problem you are experiencing
there is
not much else that we can do to help. You may find that a sys admin
could
help you debug these problems.
Thanks,
Julie
I recompiled GSL-1.16 using the -O0 option just as you did, and then
>>> recompiled MET. It all worked fine, but I am using the GNU
compilers
>>> rather than the Intel ones.
On Thu, Sep 17, 2015 at 6:31 AM, Susana Cardoso Pereira via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
>
> Hello,
>
> Now the files as a tarball.
>
> Susana
>
> On Thu, Sep 17, 2015 at 1:08 PM, Susana Cardoso Pereira <
> susana.cardoso at ua.pt> wrote:
>
> > Hello John,
> >
> > Here are the files that you asked after yours instructions.
> >
> > Susana
> >
> > On Wed, Sep 16, 2015 at 8:47 PM, Susana Cardoso Pereira <
> > susana.cardoso at ua.pt> wrote:
> >
> >> Hi Jonh,
> >>
> >>
> >> Thank you so much for your prompt response. I will implemented it
and
> let
> >> you know the news.
> >>
> >> Susana
> >>
> >>
> >> On Wed, Sep 16, 2015 at 8:22 PM, John Halley Gotway via RT <
> >> met_help at ucar.edu> wrote:
> >>
> >>> Susana,
> >>>
> >>> I recompiled GSL-1.16 using the -O0 option just as you did, and
then
> >>> recompiled MET. It all worked fine, but I am using the GNU
compilers
> >>> rather than the Intel ones.
> >>>
> >>> It looks like all your paths are correct, but I'm guessing the
linker
> is
> >>> skipping the GSL-1.16 library you're using for some reason. One
way to
> >>> check this theory is to print out the linker map. Try this...
> >>>
> >>> cd /home/susana/software/met-5.0
> >>> make clean
> >>> export CC=`which icc`
> >>> export CXX=`which icc`
> >>> export F77=`which ifort`
> >>> export LDFLAGS='-Xlinker -M'
> >>> ./configure --prefix=/home/susana/software/met-5.0
> >>> make install >& make_install.log
> >>>
> >>> Running configure with that LDFLAGS setting tells the linker to
print
> >>> it's
> >>> map. The output from make should increase from about 1500 lines
to
> over
> >>> 300,000 lines.
> >>>
> >>> Please send me the resulting make_install.log file.
> >>>
> >>> Thanks,
> >>> John
> >>>
> >>>
> >>> On Wed, Sep 16, 2015 at 12:05 PM, Susana Cardoso Pereira via RT
<
> >>> met_help at ucar.edu> wrote:
> >>>
> >>> >
> >>> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
>
> >>> >
> >>> > Hello John
> >>> >
> >>> > Ok. That solution I've already tested. The only difference is
that I
> >>> can
> >>> > only compile gsl with no optimization flags.
> >>> >
> >>> > These are the cmds that I used with gsl:
> >>> >
> >>> > make clean
> >>> > export CC=`which icc`
> >>> > export CXX=`which icc`
> >>> > export F77=`which ifort`
> >>> > ./configure CFLAGS="-O0"
--prefix=/home/susana/software/gsl-1.16
> >>> > make
> >>> > make check > log 2>&1
> >>> > make install
> >>> >
> >>> >
> >>> > Susana
> >>> >
> >>> > On Wed, Sep 16, 2015 at 6:49 PM, John Halley Gotway via RT <
> >>> > met_help at ucar.edu> wrote:
> >>> >
> >>> > > Susana,
> >>> > >
> >>> > > I just successfully recompiled MET using GSL-1.16, so we
should be
> >>> able
> >>> > to
> >>> > > make it work.
> >>> > >
> >>> > > Let's try recompiling GSL first...
> >>> > >
> >>> > > cd /home/susana/software/gsl-1.16
> >>> > > make clean
> >>> > > setenv CC `which icc`
> >>> > > ./configure --prefix=home/susana/software/gsl-1.16
> >>> > > make
> >>> > > make install
> >>> > >
> >>> > > And then recompile MET:
> >>> > >
> >>> > > cd /home/susana/software/met-5.0
> >>> > > make clean
> >>> > > make install >& make_install.log
> >>> > >
> >>> > > Please let me know how that goes.
> >>> > >
> >>> > > Thanks,
> >>> > > John
> >>> > >
> >>> > >
> >>> > >
> >>> > > On Wed, Sep 16, 2015 at 11:29 AM, Susana Cardoso Pereira via
RT <
> >>> > > met_help at ucar.edu> wrote:
> >>> > >
> >>> > > >
> >>> > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> >>> > > >
> >>> > > > Hi John,
> >>> > > >
> >>> > > > Susana
> >>> > > > Welcome abord. So, I've followed your instructions and I
still
> >>> have
> >>> > > > issues with MET. I attach the config ant make install log
files,
> >>> just
> >>> > in
> >>> > > > case.
> >>> > > >
> >>> > > > Thanks
> >>> > > >
> >>> > > > PS: I'm using gsl-1.16
> >>> > > >
> >>> > > > On Wed, Sep 16, 2015 at 4:45 PM, John Halley Gotway via RT
<
> >>> > > > met_help at ucar.edu> wrote:
> >>> > > >
> >>> > > > > Hello Susana,
> >>> > > > >
> >>> > > > > My name is John Halley Gotway and I work with Julie.
Thought
> I'd
> >>> > jump
> >>> > > in
> >>> > > > > here with a suggestion. I think you should try
recompiling MET
> >>> with
> >>> > > icc
> >>> > > > > instead of icpc. So please execute the following
commands...
> >>> > > > >
> >>> > > > > cd /home/susana/software/met-5.0
> >>> > > > > make clean
> >>> > > > > export CC=`which icc`
> >>> > > > > export CXX=`which icc`
> >>> > > > > export F77=`which ifort`
> >>> > > > > ./configure --prefix=/home/susana/software/met-5.0
> >>> > > > > make install >& make_install.log
> >>> > > > >
> >>> > > > > Please let us know how it goes.
> >>> > > > >
> >>> > > > > Thanks,
> >>> > > > > John
> >>> > > > >
> >>> > > > > On Wed, Sep 16, 2015 at 4:11 AM, Susana Cardoso Pereira
via RT
> <
> >>> > > > > met_help at ucar.edu> wrote:
> >>> > > > >
> >>> > > > > >
> >>> > > > > > <URL:
> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> >>> >
> >>> > > > > >
> >>> > > > > > Hi Julie,
> >>> > > > > >
> >>> > > > > > I follow yours instructions: change de compiler from
icpc to
> >>> icc
> >>> > > > (export
> >>> > > > > > CXX= icc) with gsl1.13 (btw I was using gsl1.16) and
I've
> >>> still got
> >>> > > the
> >>> > > > > > same error. Two notes: I could only compile the gsl
lib with
> >>> > > > CFLAGS="-O0"
> >>> > > > > > so I tried to compile the met with the same flags. The
result
> >>> > > remained
> >>> > > > a
> >>> > > > > > flop.
> >>> > > > > >
> >>> > > > > > So, it seems to me that the error might be, either in
the MET
> >>> code
> >>> > or
> >>> > > > > > during the gsl's compile process with no optmization).
> >>> > > > > >
> >>> > > > > > My programming skills are low so, at this point, I
would be
> >>> very
> >>> > > > grateful
> >>> > > > > > with your help before contacting the gsl's help
services (you
> >>> told
> >>> > > me,
> >>> > > > in
> >>> > > > > > previous messages, that the gsl lib list of files
seemed ok -
> >>> no
> >>> > lib
> >>> > > > > > missing).
> >>> > > > > >
> >>> > > > > > Wainting for your instructions,
> >>> > > > > >
> >>> > > > > > Susana
> >>> > > > > >
> >>> > > > > > On Tue, Sep 15, 2015 at 5:39 PM, Julie Prestopnik via
RT <
> >>> > > > > > met_help at ucar.edu>
> >>> > > > > > wrote:
> >>> > > > > >
> >>> > > > > > > Hi Susana.
> >>> > > > > > >
> >>> > > > > > > Thank you for sending all of the attachments! The
library
> >>> and
> >>> > > > include
> >>> > > > > > > files that you have for gsl look good. I don't think
there
> >>> are
> >>> > any
> >>> > > > > > missing
> >>> > > > > > > files.
> >>> > > > > > >
> >>> > > > > > > However, I see that you used "icc" to build GSL, but
"icpc"
> >>> to
> >>> > > build
> >>> > > > > MET.
> >>> > > > > > > Please try using "icc" to build MET as well.
> >>> > > > > > >
> >>> > > > > > > So please use:
> >>> > > > > > >
> >>> > > > > > > setenv CXX /path/to/icc
> >>> > > > > > >
> >>> > > > > > > or
> >>> > > > > > >
> >>> > > > > > > export CXX=/path/to/icc
> >>> > > > > > >
> >>> > > > > > > depending on which shell you're using, replacing
> >>> "/path/to/icc"
> >>> > > with
> >>> > > > > the
> >>> > > > > > > full path to your icc compiler.
> >>> > > > > > >
> >>> > > > > > > Then run configure and make install again:
> >>> > > > > > >
> >>> > > > > > > ./configure --prefix=/home/susana/software/met-5.0
> >>> > > > > > > make install >& make_install.log &
> >>> > > > > > >
> >>> > > > > > > Please let me know if that helps solve the problem.
> >>> > > > > > >
> >>> > > > > > > Thanks,
> >>> > > > > > > Julie
> >>> > > > > > >
> >>> > > > > > > On Mon, Sep 14, 2015 at 4:07 AM, Susana Cardoso
Pereira via
> >>> RT <
> >>> > > > > > > met_help at ucar.edu> wrote:
> >>> > > > > > >
> >>> > > > > > > >
> >>> > > > > > > > <URL:
> >>> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> >>> > >
> >>> > > > > > > >
> >>> > > > > > > > Hi Julie,
> >>> > > > > > > >
> >>> > > > > > > > Sorry, for the late response but I've been out of
the
> >>> office.
> >>> > > > Thanks
> >>> > > > > > for
> >>> > > > > > > > support you've been giving me. I really appreciate
it.
> >>> > > > > > > > I've successfully installed the gsl-1.16 package
but no
> >>> luck
> >>> > with
> >>> > > > the
> >>> > > > > > > > met-5. I still have the same error message during
the
> make
> >>> > > install
> >>> > > > > > step.
> >>> > > > > > > > Here's some notes on what I've done:
> >>> > > > > > > >
> >>> > > > > > > > 1 – gsl
> >>> > > > > > > > I had some trouble running the tests but solved it
> >>> changing the
> >>> > > > > CFLAGS
> >>> > > > > > > > (./configure CFLAGS="-O0" –prefix=`pwd`). I didn't
get
> any
> >>> > error
> >>> > > > > > message
> >>> > > > > > > > but can you check if there are missing some files
in the
> >>> gsl
> >>> > > > lib/inc
> >>> > > > > > > > directory? I attatch the list of files in those
dirs.
> >>> > > > > > > >
> >>> > > > > > > > 2 – met-5
> >>> > > > > > > > I fail to tell you that I've also download the
met-5.0's
> >>> > patches.
> >>> > > > > > > > I've got the same mistake, during the make install
step,
> >>> when
> >>> > > > trying
> >>> > > > > to
> >>> > > > > > > > compile with the gsl_wavelet (see attach)
> >>> > > > > > > >
> >>> > > > > > > > Can you help me?
> >>> > > > > > > >
> >>> > > > > > > > Thanks in advance.
> >>> > > > > > > >
> >>> > > > > > > > Susana
> >>> > > > > > > >
> >>> > > > > > > >
> >>> > > > > > > > On Wed, Sep 9, 2015 at 6:02 PM, Julie Prestopnik
via RT <
> >>> > > > > > > met_help at ucar.edu
> >>> > > > > > > > >
> >>> > > > > > > > wrote:
> >>> > > > > > > >
> >>> > > > > > > > > Hi Susana. I'm sorry that you are encountering
> >>> difficulties
> >>> > > with
> >>> > > > > > > > compiling
> >>> > > > > > > > > GSL. In the link I sent to you previously:
> >>> > > > > > > > >
> >>> > > > > > > > > http://www.gnu.org/software/gsl/
> >>> > > > > > > > >
> >>> > > > > > > > > I see there is an email address for help and a
user's
> >>> mailing
> >>> > > > list:
> >>> > > > > > > > >
> >>> > > > > > > > > help-gsl at gnu.org
> >>> > > > > > > > > http://mail.gnu.org/mailman/listinfo/help-gsl
> >>> > > > > > > > >
> >>> > > > > > > > > I don't know what newer version you got, but it
looks
> >>> like we
> >>> > > are
> >>> > > > > > using
> >>> > > > > > > > > gsl-1.13 here.
> >>> > > > > > > > >
> >>> > > > > > > > > Please let us know if we can help.
> >>> > > > > > > > >
> >>> > > > > > > > > Julie
> >>> > > > > > > > >
> >>> > > > > > > > > On Wed, Sep 9, 2015 at 2:06 AM, Susana Cardoso
Pereira
> >>> via
> >>> > RT <
> >>> > > > > > > > > met_help at ucar.edu> wrote:
> >>> > > > > > > > >
> >>> > > > > > > > > >
> >>> > > > > > > > > > <URL:
> >>> > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> >>> > > > >
> >>> > > > > > > > > >
> >>> > > > > > > > > > Hi Julia,
> >>> > > > > > > > > >
> >>> > > > > > > > > > Thanks for the support. It was great. I didn't
say
> >>> anything
> >>> > > > > because
> >>> > > > > > > I'm
> >>> > > > > > > > > > trying to compile the gsl but I'm finding some
> >>> > difficulties.
> >>> > > > I'm
> >>> > > > > > not
> >>> > > > > > > > sure
> >>> > > > > > > > > > if there is an error or only a bug in running
the
> >>> tests.
> >>> > > > > > > > > >
> >>> > > > > > > > > >
> >>> > > > > > > > > > Thanks
> >>> > > > > > > > > > Susana
> >>> > > > > > > > > >
> >>> > > > > > > > > > On Tue, Sep 8, 2015 at 6:05 PM, Julie
Prestopnik via
> >>> RT <
> >>> > > > > > > > > met_help at ucar.edu
> >>> > > > > > > > > > >
> >>> > > > > > > > > > wrote:
> >>> > > > > > > > > >
> >>> > > > > > > > > > > Hi Susana. I just wanted to follow up.
Were you
> >>> able to
> >>> > > > > > compile a
> >>> > > > > > > > > more
> >>> > > > > > > > > > > recent version of GSL and then successfully
compile
> >>> MET
> >>> > > > > > afterward?
> >>> > > > > > > > > > >
> >>> > > > > > > > > > > Thanks,
> >>> > > > > > > > > > > Julie
> >>> > > > > > > > > > >
> >>> > > > > > > > > > > On Wed, Sep 2, 2015 at 10:12 AM, Julie
Prestopnik <
> >>> > > > > > > jpresto at ucar.edu>
> >>> > > > > > > > > > > wrote:
> >>> > > > > > > > > > >
> >>> > > > > > > > > > > > Hi Susana. I'm sorry that you're having
trouble
> >>> > > compiling
> >>> > > > > MET.
> >>> > > > > > > > > Thank
> >>> > > > > > > > > > > you
> >>> > > > > > > > > > > > for attaching your config and make_install
log
> >>> files
> >>> > and
> >>> > > > for
> >>> > > > > > > > checking
> >>> > > > > > > > > > the
> >>> > > > > > > > > > > > met_help archives.
> >>> > > > > > > > > > > >
> >>> > > > > > > > > > > > I see that you are using gsl-1.5.
Unfortunately,
> >>> that
> >>> > > > older
> >>> > > > > > > > version
> >>> > > > > > > > > of
> >>> > > > > > > > > > > > the GSL software does not come with the
wavelet
> >>> code
> >>> > that
> >>> > > > MET
> >>> > > > > > > > needs.
> >>> > > > > > > > > > > > Please download a more recent version of
GSL:
> >>> > > > > > > > > > > >
> >>> > > > > > > > > > > > http://www.gnu.org/software/gsl/
> >>> > > > > > > > > > > >
> >>> > > > > > > > > > > > and compile that using the instructions
here:
> >>> > > > > > > > > > > >
> >>> > > > > > > > > > > >
> >>> > > > > > > > > > > >
> >>> > > > > > > > > > >
> >>> > > > > > > > > >
> >>> > > > > > > > >
> >>> > > > > > > >
> >>> > > > > > >
> >>> > > > > >
> >>> > > > >
> >>> > > >
> >>> > >
> >>> >
> >>>
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> >>> > > > > > > > > > > >
> >>> > > > > > > > > > > > Then, reconfigure and recompile MET.
Please let
> us
> >>> > know
> >>> > > if
> >>> > > > > you
> >>> > > > > > > > > > encounter
> >>> > > > > > > > > > > > any other issues or if that works for you.
> >>> > > > > > > > > > > >
> >>> > > > > > > > > > > > Thanks,
> >>> > > > > > > > > > > > Julie
> >>> > > > > > > > > > > >
> >>> > > > > > > > > > > >
> >>> > > > > > > > > > > > On Wed, Sep 2, 2015 at 3:25 AM, Susana
Cardoso
> >>> Pereira
> >>> > > via
> >>> > > > > RT <
> >>> > > > > > > > > > > > met_help at ucar.edu> wrote:
> >>> > > > > > > > > > > >
> >>> > > > > > > > > > > >>
> >>> > > > > > > > > > > >> Wed Sep 02 03:25:39 2015: Request 73269
was
> acted
> >>> > upon.
> >>> > > > > > > > > > > >> Transaction: Ticket created by
> >>> susana.cardoso at ua.pt
> >>> > > > > > > > > > > >> Queue: met_help
> >>> > > > > > > > > > > >> Subject: fail to compile MET5.0
> >>> > > > > > > > > > > >> Owner: Nobody
> >>> > > > > > > > > > > >> Requestors: susana.cardoso at ua.pt
> >>> > > > > > > > > > > >> Status: new
> >>> > > > > > > > > > > >> Ticket <URL:
> >>> > > > > > > > >
> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> >>> > > > > > > > > > >
> >>> > > > > > > > > > > >>
> >>> > > > > > > > > > > >>
> >>> > > > > > > > > > > >> Hi,
> >>> > > > > > > > > > > >> I've downloaded the MET 5 release but I'm
having
> >>> > trouble
> >>> > > > > > > compiling
> >>> > > > > > > > > > it. I
> >>> > > > > > > > > > > >> followed all of your instructions but
fail to
> see
> >>> > where
> >>> > > > the
> >>> > > > > > > > error's
> >>> > > > > > > > > > > origin
> >>> > > > > > > > > > > >> might be.
> >>> > > > > > > > > > > >> I attach the config and the make_install
log
> >>> file. I
> >>> > > also
> >>> > > > > > > checked
> >>> > > > > > > > > all
> >>> > > > > > > > > > > the
> >>> > > > > > > > > > > >> met_help archives in an attempt to seek
any help
> >>> but
> >>> > > with
> >>> > > > no
> >>> > > > > > > luck.
> >>> > > > > > > > > > > >>
> >>> > > > > > > > > > > >> Thanks in advance
> >>> > > > > > > > > > > >>
> >>> > > > > > > > > > > >> Susana
> >>> > > > > > > > > > > >>
> >>> > > > > > > > > > > >>
> >>> > > > > > > > > > > >
> >>> > > > > > > > > > > >
> >>> > > > > > > > > > > > --
> >>> > > > > > > > > > > > Julie Prestopnik
> >>> > > > > > > > > > > > National Center for Atmospheric Research
> >>> > > > > > > > > > > > Research Applications Laboratory
> >>> > > > > > > > > > > > Phone: 303.497.8399
> >>> > > > > > > > > > > > Email: jpresto at ucar.edu
> >>> > > > > > > > > > > >
> >>> > > > > > > > > > >
> >>> > > > > > > > > > >
> >>> > > > > > > > > > >
> >>> > > > > > > > > > > --
> >>> > > > > > > > > > > Julie Prestopnik
> >>> > > > > > > > > > > National Center for Atmospheric Research
> >>> > > > > > > > > > > Research Applications Laboratory
> >>> > > > > > > > > > > Phone: 303.497.8399
> >>> > > > > > > > > > > Email: jpresto at ucar.edu
> >>> > > > > > > > > > >
> >>> > > > > > > > > > >
> >>> > > > > > > > > >
> >>> > > > > > > > > >
> >>> > > > > > > > >
> >>> > > > > > > > >
> >>> > > > > > > > > --
> >>> > > > > > > > > Julie Prestopnik
> >>> > > > > > > > > National Center for Atmospheric Research
> >>> > > > > > > > > Research Applications Laboratory
> >>> > > > > > > > > Phone: 303.497.8399
> >>> > > > > > > > > Email: jpresto at ucar.edu
> >>> > > > > > > > >
> >>> > > > > > > > >
> >>> > > > > > > >
> >>> > > > > > > >
> >>> > > > > > >
> >>> > > > > > >
> >>> > > > > > > --
> >>> > > > > > > Julie Prestopnik
> >>> > > > > > > National Center for Atmospheric Research
> >>> > > > > > > Research Applications Laboratory
> >>> > > > > > > Phone: 303.497.8399
> >>> > > > > > > Email: jpresto at ucar.edu
> >>> > > > > > >
> >>> > > > > > >
> >>> > > > > >
> >>> > > > > >
> >>> > > > >
> >>> > > > >
> >>> > > >
> >>> > > >
> >>> > >
> >>> > >
> >>> >
> >>> >
> >>>
> >>>
> >>
> >
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
Subject: fail to compile MET5.0
From: Susana Cardoso Pereira
Time: Mon Sep 28 03:49:47 2015
Hi John,
Sorry for the late replay but I was performing some tests on my own.
You
see, I really need to have wavelat_stat working because it is an
important
part of the study that I'm conducting.
I'd installed successfully MET in previous versions (v3.1 and 4.1) but
failed to install wavelet_stat in these versions. So, I decided to
give it
one more try with the latest version. Again, I installed all but
wavelet
_stat.
I understand that you're busy but I ask you for another look at my
files. I
attached 2 tar files with the log files for the test2 (only wavelet)
and
test3 (all except wavelet_stat). I also added a txt file with all the
commands that I used.
Thanks,
Susana
On Fri, Sep 18, 2015 at 11:13 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> wrote:
> Hi Susana.
>
> Thank you for sending along the output. Unfortunately, I wasn't
able to
> determine what the problem is from the output you sent. John
mentioned
> that he was able to compile GSL-1.16 using the -O0 option as you did
and
> then recompile MET successfully, but with the GNU compilers. Today
I was
> able to successfully compile GSL-1.16 and then recompile MET using
the
> Intel compilers.
>
> Since we are not able to recreate the problem you are experiencing
there is
> not much else that we can do to help. You may find that a sys admin
could
> help you debug these problems.
>
> Thanks,
> Julie
>
>
> I recompiled GSL-1.16 using the -O0 option just as you did, and then
> >>> recompiled MET. It all worked fine, but I am using the GNU
compilers
> >>> rather than the Intel ones.
>
> On Thu, Sep 17, 2015 at 6:31 AM, Susana Cardoso Pereira via RT <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> >
> > Hello,
> >
> > Now the files as a tarball.
> >
> > Susana
> >
> > On Thu, Sep 17, 2015 at 1:08 PM, Susana Cardoso Pereira <
> > susana.cardoso at ua.pt> wrote:
> >
> > > Hello John,
> > >
> > > Here are the files that you asked after yours instructions.
> > >
> > > Susana
> > >
> > > On Wed, Sep 16, 2015 at 8:47 PM, Susana Cardoso Pereira <
> > > susana.cardoso at ua.pt> wrote:
> > >
> > >> Hi Jonh,
> > >>
> > >>
> > >> Thank you so much for your prompt response. I will implemented
it and
> > let
> > >> you know the news.
> > >>
> > >> Susana
> > >>
> > >>
> > >> On Wed, Sep 16, 2015 at 8:22 PM, John Halley Gotway via RT <
> > >> met_help at ucar.edu> wrote:
> > >>
> > >>> Susana,
> > >>>
> > >>> I recompiled GSL-1.16 using the -O0 option just as you did,
and then
> > >>> recompiled MET. It all worked fine, but I am using the GNU
compilers
> > >>> rather than the Intel ones.
> > >>>
> > >>> It looks like all your paths are correct, but I'm guessing the
linker
> > is
> > >>> skipping the GSL-1.16 library you're using for some reason.
One way
> to
> > >>> check this theory is to print out the linker map. Try this...
> > >>>
> > >>> cd /home/susana/software/met-5.0
> > >>> make clean
> > >>> export CC=`which icc`
> > >>> export CXX=`which icc`
> > >>> export F77=`which ifort`
> > >>> export LDFLAGS='-Xlinker -M'
> > >>> ./configure --prefix=/home/susana/software/met-5.0
> > >>> make install >& make_install.log
> > >>>
> > >>> Running configure with that LDFLAGS setting tells the linker
to print
> > >>> it's
> > >>> map. The output from make should increase from about 1500
lines to
> > over
> > >>> 300,000 lines.
> > >>>
> > >>> Please send me the resulting make_install.log file.
> > >>>
> > >>> Thanks,
> > >>> John
> > >>>
> > >>>
> > >>> On Wed, Sep 16, 2015 at 12:05 PM, Susana Cardoso Pereira via
RT <
> > >>> met_help at ucar.edu> wrote:
> > >>>
> > >>> >
> > >>> > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> > >>> >
> > >>> > Hello John
> > >>> >
> > >>> > Ok. That solution I've already tested. The only difference
is that
> I
> > >>> can
> > >>> > only compile gsl with no optimization flags.
> > >>> >
> > >>> > These are the cmds that I used with gsl:
> > >>> >
> > >>> > make clean
> > >>> > export CC=`which icc`
> > >>> > export CXX=`which icc`
> > >>> > export F77=`which ifort`
> > >>> > ./configure CFLAGS="-O0"
--prefix=/home/susana/software/gsl-1.16
> > >>> > make
> > >>> > make check > log 2>&1
> > >>> > make install
> > >>> >
> > >>> >
> > >>> > Susana
> > >>> >
> > >>> > On Wed, Sep 16, 2015 at 6:49 PM, John Halley Gotway via RT <
> > >>> > met_help at ucar.edu> wrote:
> > >>> >
> > >>> > > Susana,
> > >>> > >
> > >>> > > I just successfully recompiled MET using GSL-1.16, so we
should
> be
> > >>> able
> > >>> > to
> > >>> > > make it work.
> > >>> > >
> > >>> > > Let's try recompiling GSL first...
> > >>> > >
> > >>> > > cd /home/susana/software/gsl-1.16
> > >>> > > make clean
> > >>> > > setenv CC `which icc`
> > >>> > > ./configure --prefix=home/susana/software/gsl-1.16
> > >>> > > make
> > >>> > > make install
> > >>> > >
> > >>> > > And then recompile MET:
> > >>> > >
> > >>> > > cd /home/susana/software/met-5.0
> > >>> > > make clean
> > >>> > > make install >& make_install.log
> > >>> > >
> > >>> > > Please let me know how that goes.
> > >>> > >
> > >>> > > Thanks,
> > >>> > > John
> > >>> > >
> > >>> > >
> > >>> > >
> > >>> > > On Wed, Sep 16, 2015 at 11:29 AM, Susana Cardoso Pereira
via RT <
> > >>> > > met_help at ucar.edu> wrote:
> > >>> > >
> > >>> > > >
> > >>> > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> >
> > >>> > > >
> > >>> > > > Hi John,
> > >>> > > >
> > >>> > > > Susana
> > >>> > > > Welcome abord. So, I've followed your instructions and
I
> still
> > >>> have
> > >>> > > > issues with MET. I attach the config ant make install
log
> files,
> > >>> just
> > >>> > in
> > >>> > > > case.
> > >>> > > >
> > >>> > > > Thanks
> > >>> > > >
> > >>> > > > PS: I'm using gsl-1.16
> > >>> > > >
> > >>> > > > On Wed, Sep 16, 2015 at 4:45 PM, John Halley Gotway via
RT <
> > >>> > > > met_help at ucar.edu> wrote:
> > >>> > > >
> > >>> > > > > Hello Susana,
> > >>> > > > >
> > >>> > > > > My name is John Halley Gotway and I work with Julie.
Thought
> > I'd
> > >>> > jump
> > >>> > > in
> > >>> > > > > here with a suggestion. I think you should try
recompiling
> MET
> > >>> with
> > >>> > > icc
> > >>> > > > > instead of icpc. So please execute the following
commands...
> > >>> > > > >
> > >>> > > > > cd /home/susana/software/met-5.0
> > >>> > > > > make clean
> > >>> > > > > export CC=`which icc`
> > >>> > > > > export CXX=`which icc`
> > >>> > > > > export F77=`which ifort`
> > >>> > > > > ./configure --prefix=/home/susana/software/met-5.0
> > >>> > > > > make install >& make_install.log
> > >>> > > > >
> > >>> > > > > Please let us know how it goes.
> > >>> > > > >
> > >>> > > > > Thanks,
> > >>> > > > > John
> > >>> > > > >
> > >>> > > > > On Wed, Sep 16, 2015 at 4:11 AM, Susana Cardoso
Pereira via
> RT
> > <
> > >>> > > > > met_help at ucar.edu> wrote:
> > >>> > > > >
> > >>> > > > > >
> > >>> > > > > > <URL:
> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > >>> >
> > >>> > > > > >
> > >>> > > > > > Hi Julie,
> > >>> > > > > >
> > >>> > > > > > I follow yours instructions: change de compiler from
icpc
> to
> > >>> icc
> > >>> > > > (export
> > >>> > > > > > CXX= icc) with gsl1.13 (btw I was using gsl1.16) and
I've
> > >>> still got
> > >>> > > the
> > >>> > > > > > same error. Two notes: I could only compile the gsl
lib
> with
> > >>> > > > CFLAGS="-O0"
> > >>> > > > > > so I tried to compile the met with the same flags.
The
> result
> > >>> > > remained
> > >>> > > > a
> > >>> > > > > > flop.
> > >>> > > > > >
> > >>> > > > > > So, it seems to me that the error might be, either
in the
> MET
> > >>> code
> > >>> > or
> > >>> > > > > > during the gsl's compile process with no
optmization).
> > >>> > > > > >
> > >>> > > > > > My programming skills are low so, at this point, I
would be
> > >>> very
> > >>> > > > grateful
> > >>> > > > > > with your help before contacting the gsl's help
services
> (you
> > >>> told
> > >>> > > me,
> > >>> > > > in
> > >>> > > > > > previous messages, that the gsl lib list of files
seemed
> ok -
> > >>> no
> > >>> > lib
> > >>> > > > > > missing).
> > >>> > > > > >
> > >>> > > > > > Wainting for your instructions,
> > >>> > > > > >
> > >>> > > > > > Susana
> > >>> > > > > >
> > >>> > > > > > On Tue, Sep 15, 2015 at 5:39 PM, Julie Prestopnik
via RT <
> > >>> > > > > > met_help at ucar.edu>
> > >>> > > > > > wrote:
> > >>> > > > > >
> > >>> > > > > > > Hi Susana.
> > >>> > > > > > >
> > >>> > > > > > > Thank you for sending all of the attachments! The
> library
> > >>> and
> > >>> > > > include
> > >>> > > > > > > files that you have for gsl look good. I don't
think
> there
> > >>> are
> > >>> > any
> > >>> > > > > > missing
> > >>> > > > > > > files.
> > >>> > > > > > >
> > >>> > > > > > > However, I see that you used "icc" to build GSL,
but
> "icpc"
> > >>> to
> > >>> > > build
> > >>> > > > > MET.
> > >>> > > > > > > Please try using "icc" to build MET as well.
> > >>> > > > > > >
> > >>> > > > > > > So please use:
> > >>> > > > > > >
> > >>> > > > > > > setenv CXX /path/to/icc
> > >>> > > > > > >
> > >>> > > > > > > or
> > >>> > > > > > >
> > >>> > > > > > > export CXX=/path/to/icc
> > >>> > > > > > >
> > >>> > > > > > > depending on which shell you're using, replacing
> > >>> "/path/to/icc"
> > >>> > > with
> > >>> > > > > the
> > >>> > > > > > > full path to your icc compiler.
> > >>> > > > > > >
> > >>> > > > > > > Then run configure and make install again:
> > >>> > > > > > >
> > >>> > > > > > > ./configure --prefix=/home/susana/software/met-5.0
> > >>> > > > > > > make install >& make_install.log &
> > >>> > > > > > >
> > >>> > > > > > > Please let me know if that helps solve the
problem.
> > >>> > > > > > >
> > >>> > > > > > > Thanks,
> > >>> > > > > > > Julie
> > >>> > > > > > >
> > >>> > > > > > > On Mon, Sep 14, 2015 at 4:07 AM, Susana Cardoso
Pereira
> via
> > >>> RT <
> > >>> > > > > > > met_help at ucar.edu> wrote:
> > >>> > > > > > >
> > >>> > > > > > > >
> > >>> > > > > > > > <URL:
> > >>> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > >>> > >
> > >>> > > > > > > >
> > >>> > > > > > > > Hi Julie,
> > >>> > > > > > > >
> > >>> > > > > > > > Sorry, for the late response but I've been out
of the
> > >>> office.
> > >>> > > > Thanks
> > >>> > > > > > for
> > >>> > > > > > > > support you've been giving me. I really
appreciate it.
> > >>> > > > > > > > I've successfully installed the gsl-1.16 package
but no
> > >>> luck
> > >>> > with
> > >>> > > > the
> > >>> > > > > > > > met-5. I still have the same error message
during the
> > make
> > >>> > > install
> > >>> > > > > > step.
> > >>> > > > > > > > Here's some notes on what I've done:
> > >>> > > > > > > >
> > >>> > > > > > > > 1 – gsl
> > >>> > > > > > > > I had some trouble running the tests but solved
it
> > >>> changing the
> > >>> > > > > CFLAGS
> > >>> > > > > > > > (./configure CFLAGS="-O0" –prefix=`pwd`). I
didn't get
> > any
> > >>> > error
> > >>> > > > > > message
> > >>> > > > > > > > but can you check if there are missing some
files in
> the
> > >>> gsl
> > >>> > > > lib/inc
> > >>> > > > > > > > directory? I attatch the list of files in those
dirs.
> > >>> > > > > > > >
> > >>> > > > > > > > 2 – met-5
> > >>> > > > > > > > I fail to tell you that I've also download the
> met-5.0's
> > >>> > patches.
> > >>> > > > > > > > I've got the same mistake, during the make
install
> step,
> > >>> when
> > >>> > > > trying
> > >>> > > > > to
> > >>> > > > > > > > compile with the gsl_wavelet (see attach)
> > >>> > > > > > > >
> > >>> > > > > > > > Can you help me?
> > >>> > > > > > > >
> > >>> > > > > > > > Thanks in advance.
> > >>> > > > > > > >
> > >>> > > > > > > > Susana
> > >>> > > > > > > >
> > >>> > > > > > > >
> > >>> > > > > > > > On Wed, Sep 9, 2015 at 6:02 PM, Julie Prestopnik
via
> RT <
> > >>> > > > > > > met_help at ucar.edu
> > >>> > > > > > > > >
> > >>> > > > > > > > wrote:
> > >>> > > > > > > >
> > >>> > > > > > > > > Hi Susana. I'm sorry that you are
encountering
> > >>> difficulties
> > >>> > > with
> > >>> > > > > > > > compiling
> > >>> > > > > > > > > GSL. In the link I sent to you previously:
> > >>> > > > > > > > >
> > >>> > > > > > > > > http://www.gnu.org/software/gsl/
> > >>> > > > > > > > >
> > >>> > > > > > > > > I see there is an email address for help and a
user's
> > >>> mailing
> > >>> > > > list:
> > >>> > > > > > > > >
> > >>> > > > > > > > > help-gsl at gnu.org
> > >>> > > > > > > > > http://mail.gnu.org/mailman/listinfo/help-gsl
> > >>> > > > > > > > >
> > >>> > > > > > > > > I don't know what newer version you got, but
it looks
> > >>> like we
> > >>> > > are
> > >>> > > > > > using
> > >>> > > > > > > > > gsl-1.13 here.
> > >>> > > > > > > > >
> > >>> > > > > > > > > Please let us know if we can help.
> > >>> > > > > > > > >
> > >>> > > > > > > > > Julie
> > >>> > > > > > > > >
> > >>> > > > > > > > > On Wed, Sep 9, 2015 at 2:06 AM, Susana Cardoso
> Pereira
> > >>> via
> > >>> > RT <
> > >>> > > > > > > > > met_help at ucar.edu> wrote:
> > >>> > > > > > > > >
> > >>> > > > > > > > > >
> > >>> > > > > > > > > > <URL:
> > >>> > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > >>> > > > >
> > >>> > > > > > > > > >
> > >>> > > > > > > > > > Hi Julia,
> > >>> > > > > > > > > >
> > >>> > > > > > > > > > Thanks for the support. It was great. I
didn't say
> > >>> anything
> > >>> > > > > because
> > >>> > > > > > > I'm
> > >>> > > > > > > > > > trying to compile the gsl but I'm finding
some
> > >>> > difficulties.
> > >>> > > > I'm
> > >>> > > > > > not
> > >>> > > > > > > > sure
> > >>> > > > > > > > > > if there is an error or only a bug in
running the
> > >>> tests.
> > >>> > > > > > > > > >
> > >>> > > > > > > > > >
> > >>> > > > > > > > > > Thanks
> > >>> > > > > > > > > > Susana
> > >>> > > > > > > > > >
> > >>> > > > > > > > > > On Tue, Sep 8, 2015 at 6:05 PM, Julie
Prestopnik
> via
> > >>> RT <
> > >>> > > > > > > > > met_help at ucar.edu
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > wrote:
> > >>> > > > > > > > > >
> > >>> > > > > > > > > > > Hi Susana. I just wanted to follow up.
Were you
> > >>> able to
> > >>> > > > > > compile a
> > >>> > > > > > > > > more
> > >>> > > > > > > > > > > recent version of GSL and then
successfully
> compile
> > >>> MET
> > >>> > > > > > afterward?
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > > Thanks,
> > >>> > > > > > > > > > > Julie
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > > On Wed, Sep 2, 2015 at 10:12 AM, Julie
> Prestopnik <
> > >>> > > > > > > jpresto at ucar.edu>
> > >>> > > > > > > > > > > wrote:
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > > > Hi Susana. I'm sorry that you're having
> trouble
> > >>> > > compiling
> > >>> > > > > MET.
> > >>> > > > > > > > > Thank
> > >>> > > > > > > > > > > you
> > >>> > > > > > > > > > > > for attaching your config and
make_install log
> > >>> files
> > >>> > and
> > >>> > > > for
> > >>> > > > > > > > checking
> > >>> > > > > > > > > > the
> > >>> > > > > > > > > > > > met_help archives.
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > > I see that you are using gsl-1.5.
> Unfortunately,
> > >>> that
> > >>> > > > older
> > >>> > > > > > > > version
> > >>> > > > > > > > > of
> > >>> > > > > > > > > > > > the GSL software does not come with the
wavelet
> > >>> code
> > >>> > that
> > >>> > > > MET
> > >>> > > > > > > > needs.
> > >>> > > > > > > > > > > > Please download a more recent version of
GSL:
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > > http://www.gnu.org/software/gsl/
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > > and compile that using the instructions
here:
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > >
> > >>> > > > > > > > >
> > >>> > > > > > > >
> > >>> > > > > > >
> > >>> > > > > >
> > >>> > > > >
> > >>> > > >
> > >>> > >
> > >>> >
> > >>>
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > > Then, reconfigure and recompile MET.
Please
> let
> > us
> > >>> > know
> > >>> > > if
> > >>> > > > > you
> > >>> > > > > > > > > > encounter
> > >>> > > > > > > > > > > > any other issues or if that works for
you.
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > > Thanks,
> > >>> > > > > > > > > > > > Julie
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > > On Wed, Sep 2, 2015 at 3:25 AM, Susana
Cardoso
> > >>> Pereira
> > >>> > > via
> > >>> > > > > RT <
> > >>> > > > > > > > > > > > met_help at ucar.edu> wrote:
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > >>
> > >>> > > > > > > > > > > >> Wed Sep 02 03:25:39 2015: Request 73269
was
> > acted
> > >>> > upon.
> > >>> > > > > > > > > > > >> Transaction: Ticket created by
> > >>> susana.cardoso at ua.pt
> > >>> > > > > > > > > > > >> Queue: met_help
> > >>> > > > > > > > > > > >> Subject: fail to compile MET5.0
> > >>> > > > > > > > > > > >> Owner: Nobody
> > >>> > > > > > > > > > > >> Requestors: susana.cardoso at ua.pt
> > >>> > > > > > > > > > > >> Status: new
> > >>> > > > > > > > > > > >> Ticket <URL:
> > >>> > > > > > > > >
> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > > >>
> > >>> > > > > > > > > > > >>
> > >>> > > > > > > > > > > >> Hi,
> > >>> > > > > > > > > > > >> I've downloaded the MET 5 release but
I'm
> having
> > >>> > trouble
> > >>> > > > > > > compiling
> > >>> > > > > > > > > > it. I
> > >>> > > > > > > > > > > >> followed all of your instructions but
fail to
> > see
> > >>> > where
> > >>> > > > the
> > >>> > > > > > > > error's
> > >>> > > > > > > > > > > origin
> > >>> > > > > > > > > > > >> might be.
> > >>> > > > > > > > > > > >> I attach the config and the
make_install log
> > >>> file. I
> > >>> > > also
> > >>> > > > > > > checked
> > >>> > > > > > > > > all
> > >>> > > > > > > > > > > the
> > >>> > > > > > > > > > > >> met_help archives in an attempt to seek
any
> help
> > >>> but
> > >>> > > with
> > >>> > > > no
> > >>> > > > > > > luck.
> > >>> > > > > > > > > > > >>
> > >>> > > > > > > > > > > >> Thanks in advance
> > >>> > > > > > > > > > > >>
> > >>> > > > > > > > > > > >> Susana
> > >>> > > > > > > > > > > >>
> > >>> > > > > > > > > > > >>
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > > --
> > >>> > > > > > > > > > > > Julie Prestopnik
> > >>> > > > > > > > > > > > National Center for Atmospheric Research
> > >>> > > > > > > > > > > > Research Applications Laboratory
> > >>> > > > > > > > > > > > Phone: 303.497.8399
> > >>> > > > > > > > > > > > Email: jpresto at ucar.edu
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > > --
> > >>> > > > > > > > > > > Julie Prestopnik
> > >>> > > > > > > > > > > National Center for Atmospheric Research
> > >>> > > > > > > > > > > Research Applications Laboratory
> > >>> > > > > > > > > > > Phone: 303.497.8399
> > >>> > > > > > > > > > > Email: jpresto at ucar.edu
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > >
> > >>> > > > > > > > > >
> > >>> > > > > > > > >
> > >>> > > > > > > > >
> > >>> > > > > > > > > --
> > >>> > > > > > > > > Julie Prestopnik
> > >>> > > > > > > > > National Center for Atmospheric Research
> > >>> > > > > > > > > Research Applications Laboratory
> > >>> > > > > > > > > Phone: 303.497.8399
> > >>> > > > > > > > > Email: jpresto at ucar.edu
> > >>> > > > > > > > >
> > >>> > > > > > > > >
> > >>> > > > > > > >
> > >>> > > > > > > >
> > >>> > > > > > >
> > >>> > > > > > >
> > >>> > > > > > > --
> > >>> > > > > > > Julie Prestopnik
> > >>> > > > > > > National Center for Atmospheric Research
> > >>> > > > > > > Research Applications Laboratory
> > >>> > > > > > > Phone: 303.497.8399
> > >>> > > > > > > Email: jpresto at ucar.edu
> > >>> > > > > > >
> > >>> > > > > > >
> > >>> > > > > >
> > >>> > > > > >
> > >>> > > > >
> > >>> > > > >
> > >>> > > >
> > >>> > > >
> > >>> > >
> > >>> > >
> > >>> >
> > >>> >
> > >>>
> > >>>
> > >>
> > >
> >
> >
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
>
------------------------------------------------
Subject: fail to compile MET5.0
From: Susana Cardoso Pereira
Time: Mon Sep 28 03:49:47 2015
Test 2
------------------------------------------------------------------
make clean
export MET_NETCDF=/home/susana/local
export MET_BUFR=/home/susana/local
export MET_GSLINC=/home/susana/software/gsl-1.16/include/gsl
export MET_GSLLIB=/home/susana/software/gsl-1.16/lib
export CC=`which icc`
export CXX=`which icc`
export F77=`which ifort`
./configure --prefix=/home/susana/software/met-5.0 --disable-grib2
--disable-ascii2nc --disable-ensemble_stat --disable-gen_poly_mask
--disable-grid_stat --disable-madis2nc --disable-mode --disable-
mode_analysis --disable-pb2nc --disable-pcp_combine --disable-
plot_data_plane --disable-plot_point_obs --disable-point_stat
--disable-stat_analysis --disable-series_analysis --disable-wwmca
--disable-modis --disable-mode_graphics --disable-gen_circle_mask
--disable-tc_utils
make install >& make_install.log&
tail -f make_install.log
mv config.log config_log-t2
mv make_install.log make_install-t2
tar -cvf t2.tar config_log-t2 make_install-t2
/home/susana/software/met-5.0/src/tools/core/wavelet_stat/*
tar --list --file=t2.tar
Test 3
------------------------------------------------------------------
make clean
export MET_NETCDF=/home/susana/local
export MET_BUFR=/home/susana/local
export MET_GSLINC=/home/susana/software/gsl-1.16/include/gsl
export MET_GSLLIB=/home/susana/software/gsl-1.16/lib
export CC=`which icc`
export CXX=`which icc`
export F77=`which ifort`
./configure --prefix=/home/susana/software/met-5.0 --disable-wavelet-
stat
make install >& make_install.log&
tail -f make_install.log
mv config.log config_log-t3
mv make_install.log make_install-t3
tar -cvf t3.tar config_log-t3 make_install-t3
/home/susana/software/met-5.0/src/tools/core/wavelet_stat/*
tar --list --file=t3.tar
------------------------------------------------
Subject: fail to compile MET5.0
From: Susana Cardoso Pereira
Time: Mon Sep 28 03:58:28 2015
Hi John,
Sorry for the late replay but I was performing some tests on my own.
You
see, I really need to have wavelat_stat working because it is an
important
part of the study that I'm conducting.
I'd installed successfully MET in previous versions (v3.1 and 4.1) but
failed to install wavelet_stat in these versions. So, I decided to
give it
one more try with the latest version. Again, I installed all but
wavelet
_stat.
I understand that you're busy but I ask you for another look at my
files. I
attached 2 tar files with the log files for the test2 (only wavelet)
and
test3 (all except wavelet_stat). I also added a txt file with all the
commands that I used.
Thanks,
Susana
On Fri, Sep 18, 2015 at 11:13 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> wrote:
> Hi Susana.
>
> Thank you for sending along the output. Unfortunately, I wasn't
able to
> determine what the problem is from the output you sent. John
mentioned
> that he was able to compile GSL-1.16 using the -O0 option as you did
and
> then recompile MET successfully, but with the GNU compilers. Today
I was
> able to successfully compile GSL-1.16 and then recompile MET using
the
> Intel compilers.
>
> Since we are not able to recreate the problem you are experiencing
there is
> not much else that we can do to help. You may find that a sys admin
could
> help you debug these problems.
>
> Thanks,
> Julie
>
>
> I recompiled GSL-1.16 using the -O0 option just as you did, and then
> >>> recompiled MET. It all worked fine, but I am using the GNU
compilers
> >>> rather than the Intel ones.
>
> On Thu, Sep 17, 2015 at 6:31 AM, Susana Cardoso Pereira via RT <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> >
> > Hello,
> >
> > Now the files as a tarball.
> >
> > Susana
> >
> > On Thu, Sep 17, 2015 at 1:08 PM, Susana Cardoso Pereira <
> > susana.cardoso at ua.pt> wrote:
> >
> > > Hello John,
> > >
> > > Here are the files that you asked after yours instructions.
> > >
> > > Susana
> > >
> > > On Wed, Sep 16, 2015 at 8:47 PM, Susana Cardoso Pereira <
> > > susana.cardoso at ua.pt> wrote:
> > >
> > >> Hi Jonh,
> > >>
> > >>
> > >> Thank you so much for your prompt response. I will implemented
it and
> > let
> > >> you know the news.
> > >>
> > >> Susana
> > >>
> > >>
> > >> On Wed, Sep 16, 2015 at 8:22 PM, John Halley Gotway via RT <
> > >> met_help at ucar.edu> wrote:
> > >>
> > >>> Susana,
> > >>>
> > >>> I recompiled GSL-1.16 using the -O0 option just as you did,
and then
> > >>> recompiled MET. It all worked fine, but I am using the GNU
compilers
> > >>> rather than the Intel ones.
> > >>>
> > >>> It looks like all your paths are correct, but I'm guessing the
linker
> > is
> > >>> skipping the GSL-1.16 library you're using for some reason.
One way
> to
> > >>> check this theory is to print out the linker map. Try this...
> > >>>
> > >>> cd /home/susana/software/met-5.0
> > >>> make clean
> > >>> export CC=`which icc`
> > >>> export CXX=`which icc`
> > >>> export F77=`which ifort`
> > >>> export LDFLAGS='-Xlinker -M'
> > >>> ./configure --prefix=/home/susana/software/met-5.0
> > >>> make install >& make_install.log
> > >>>
> > >>> Running configure with that LDFLAGS setting tells the linker
to print
> > >>> it's
> > >>> map. The output from make should increase from about 1500
lines to
> > over
> > >>> 300,000 lines.
> > >>>
> > >>> Please send me the resulting make_install.log file.
> > >>>
> > >>> Thanks,
> > >>> John
> > >>>
> > >>>
> > >>> On Wed, Sep 16, 2015 at 12:05 PM, Susana Cardoso Pereira via
RT <
> > >>> met_help at ucar.edu> wrote:
> > >>>
> > >>> >
> > >>> > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> > >>> >
> > >>> > Hello John
> > >>> >
> > >>> > Ok. That solution I've already tested. The only difference
is that
> I
> > >>> can
> > >>> > only compile gsl with no optimization flags.
> > >>> >
> > >>> > These are the cmds that I used with gsl:
> > >>> >
> > >>> > make clean
> > >>> > export CC=`which icc`
> > >>> > export CXX=`which icc`
> > >>> > export F77=`which ifort`
> > >>> > ./configure CFLAGS="-O0"
--prefix=/home/susana/software/gsl-1.16
> > >>> > make
> > >>> > make check > log 2>&1
> > >>> > make install
> > >>> >
> > >>> >
> > >>> > Susana
> > >>> >
> > >>> > On Wed, Sep 16, 2015 at 6:49 PM, John Halley Gotway via RT <
> > >>> > met_help at ucar.edu> wrote:
> > >>> >
> > >>> > > Susana,
> > >>> > >
> > >>> > > I just successfully recompiled MET using GSL-1.16, so we
should
> be
> > >>> able
> > >>> > to
> > >>> > > make it work.
> > >>> > >
> > >>> > > Let's try recompiling GSL first...
> > >>> > >
> > >>> > > cd /home/susana/software/gsl-1.16
> > >>> > > make clean
> > >>> > > setenv CC `which icc`
> > >>> > > ./configure --prefix=home/susana/software/gsl-1.16
> > >>> > > make
> > >>> > > make install
> > >>> > >
> > >>> > > And then recompile MET:
> > >>> > >
> > >>> > > cd /home/susana/software/met-5.0
> > >>> > > make clean
> > >>> > > make install >& make_install.log
> > >>> > >
> > >>> > > Please let me know how that goes.
> > >>> > >
> > >>> > > Thanks,
> > >>> > > John
> > >>> > >
> > >>> > >
> > >>> > >
> > >>> > > On Wed, Sep 16, 2015 at 11:29 AM, Susana Cardoso Pereira
via RT <
> > >>> > > met_help at ucar.edu> wrote:
> > >>> > >
> > >>> > > >
> > >>> > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> >
> > >>> > > >
> > >>> > > > Hi John,
> > >>> > > >
> > >>> > > > Susana
> > >>> > > > Welcome abord. So, I've followed your instructions and
I
> still
> > >>> have
> > >>> > > > issues with MET. I attach the config ant make install
log
> files,
> > >>> just
> > >>> > in
> > >>> > > > case.
> > >>> > > >
> > >>> > > > Thanks
> > >>> > > >
> > >>> > > > PS: I'm using gsl-1.16
> > >>> > > >
> > >>> > > > On Wed, Sep 16, 2015 at 4:45 PM, John Halley Gotway via
RT <
> > >>> > > > met_help at ucar.edu> wrote:
> > >>> > > >
> > >>> > > > > Hello Susana,
> > >>> > > > >
> > >>> > > > > My name is John Halley Gotway and I work with Julie.
Thought
> > I'd
> > >>> > jump
> > >>> > > in
> > >>> > > > > here with a suggestion. I think you should try
recompiling
> MET
> > >>> with
> > >>> > > icc
> > >>> > > > > instead of icpc. So please execute the following
commands...
> > >>> > > > >
> > >>> > > > > cd /home/susana/software/met-5.0
> > >>> > > > > make clean
> > >>> > > > > export CC=`which icc`
> > >>> > > > > export CXX=`which icc`
> > >>> > > > > export F77=`which ifort`
> > >>> > > > > ./configure --prefix=/home/susana/software/met-5.0
> > >>> > > > > make install >& make_install.log
> > >>> > > > >
> > >>> > > > > Please let us know how it goes.
> > >>> > > > >
> > >>> > > > > Thanks,
> > >>> > > > > John
> > >>> > > > >
> > >>> > > > > On Wed, Sep 16, 2015 at 4:11 AM, Susana Cardoso
Pereira via
> RT
> > <
> > >>> > > > > met_help at ucar.edu> wrote:
> > >>> > > > >
> > >>> > > > > >
> > >>> > > > > > <URL:
> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > >>> >
> > >>> > > > > >
> > >>> > > > > > Hi Julie,
> > >>> > > > > >
> > >>> > > > > > I follow yours instructions: change de compiler from
icpc
> to
> > >>> icc
> > >>> > > > (export
> > >>> > > > > > CXX= icc) with gsl1.13 (btw I was using gsl1.16) and
I've
> > >>> still got
> > >>> > > the
> > >>> > > > > > same error. Two notes: I could only compile the gsl
lib
> with
> > >>> > > > CFLAGS="-O0"
> > >>> > > > > > so I tried to compile the met with the same flags.
The
> result
> > >>> > > remained
> > >>> > > > a
> > >>> > > > > > flop.
> > >>> > > > > >
> > >>> > > > > > So, it seems to me that the error might be, either
in the
> MET
> > >>> code
> > >>> > or
> > >>> > > > > > during the gsl's compile process with no
optmization).
> > >>> > > > > >
> > >>> > > > > > My programming skills are low so, at this point, I
would be
> > >>> very
> > >>> > > > grateful
> > >>> > > > > > with your help before contacting the gsl's help
services
> (you
> > >>> told
> > >>> > > me,
> > >>> > > > in
> > >>> > > > > > previous messages, that the gsl lib list of files
seemed
> ok -
> > >>> no
> > >>> > lib
> > >>> > > > > > missing).
> > >>> > > > > >
> > >>> > > > > > Wainting for your instructions,
> > >>> > > > > >
> > >>> > > > > > Susana
> > >>> > > > > >
> > >>> > > > > > On Tue, Sep 15, 2015 at 5:39 PM, Julie Prestopnik
via RT <
> > >>> > > > > > met_help at ucar.edu>
> > >>> > > > > > wrote:
> > >>> > > > > >
> > >>> > > > > > > Hi Susana.
> > >>> > > > > > >
> > >>> > > > > > > Thank you for sending all of the attachments! The
> library
> > >>> and
> > >>> > > > include
> > >>> > > > > > > files that you have for gsl look good. I don't
think
> there
> > >>> are
> > >>> > any
> > >>> > > > > > missing
> > >>> > > > > > > files.
> > >>> > > > > > >
> > >>> > > > > > > However, I see that you used "icc" to build GSL,
but
> "icpc"
> > >>> to
> > >>> > > build
> > >>> > > > > MET.
> > >>> > > > > > > Please try using "icc" to build MET as well.
> > >>> > > > > > >
> > >>> > > > > > > So please use:
> > >>> > > > > > >
> > >>> > > > > > > setenv CXX /path/to/icc
> > >>> > > > > > >
> > >>> > > > > > > or
> > >>> > > > > > >
> > >>> > > > > > > export CXX=/path/to/icc
> > >>> > > > > > >
> > >>> > > > > > > depending on which shell you're using, replacing
> > >>> "/path/to/icc"
> > >>> > > with
> > >>> > > > > the
> > >>> > > > > > > full path to your icc compiler.
> > >>> > > > > > >
> > >>> > > > > > > Then run configure and make install again:
> > >>> > > > > > >
> > >>> > > > > > > ./configure --prefix=/home/susana/software/met-5.0
> > >>> > > > > > > make install >& make_install.log &
> > >>> > > > > > >
> > >>> > > > > > > Please let me know if that helps solve the
problem.
> > >>> > > > > > >
> > >>> > > > > > > Thanks,
> > >>> > > > > > > Julie
> > >>> > > > > > >
> > >>> > > > > > > On Mon, Sep 14, 2015 at 4:07 AM, Susana Cardoso
Pereira
> via
> > >>> RT <
> > >>> > > > > > > met_help at ucar.edu> wrote:
> > >>> > > > > > >
> > >>> > > > > > > >
> > >>> > > > > > > > <URL:
> > >>> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > >>> > >
> > >>> > > > > > > >
> > >>> > > > > > > > Hi Julie,
> > >>> > > > > > > >
> > >>> > > > > > > > Sorry, for the late response but I've been out
of the
> > >>> office.
> > >>> > > > Thanks
> > >>> > > > > > for
> > >>> > > > > > > > support you've been giving me. I really
appreciate it.
> > >>> > > > > > > > I've successfully installed the gsl-1.16 package
but no
> > >>> luck
> > >>> > with
> > >>> > > > the
> > >>> > > > > > > > met-5. I still have the same error message
during the
> > make
> > >>> > > install
> > >>> > > > > > step.
> > >>> > > > > > > > Here's some notes on what I've done:
> > >>> > > > > > > >
> > >>> > > > > > > > 1 – gsl
> > >>> > > > > > > > I had some trouble running the tests but solved
it
> > >>> changing the
> > >>> > > > > CFLAGS
> > >>> > > > > > > > (./configure CFLAGS="-O0" –prefix=`pwd`). I
didn't get
> > any
> > >>> > error
> > >>> > > > > > message
> > >>> > > > > > > > but can you check if there are missing some
files in
> the
> > >>> gsl
> > >>> > > > lib/inc
> > >>> > > > > > > > directory? I attatch the list of files in those
dirs.
> > >>> > > > > > > >
> > >>> > > > > > > > 2 – met-5
> > >>> > > > > > > > I fail to tell you that I've also download the
> met-5.0's
> > >>> > patches.
> > >>> > > > > > > > I've got the same mistake, during the make
install
> step,
> > >>> when
> > >>> > > > trying
> > >>> > > > > to
> > >>> > > > > > > > compile with the gsl_wavelet (see attach)
> > >>> > > > > > > >
> > >>> > > > > > > > Can you help me?
> > >>> > > > > > > >
> > >>> > > > > > > > Thanks in advance.
> > >>> > > > > > > >
> > >>> > > > > > > > Susana
> > >>> > > > > > > >
> > >>> > > > > > > >
> > >>> > > > > > > > On Wed, Sep 9, 2015 at 6:02 PM, Julie Prestopnik
via
> RT <
> > >>> > > > > > > met_help at ucar.edu
> > >>> > > > > > > > >
> > >>> > > > > > > > wrote:
> > >>> > > > > > > >
> > >>> > > > > > > > > Hi Susana. I'm sorry that you are
encountering
> > >>> difficulties
> > >>> > > with
> > >>> > > > > > > > compiling
> > >>> > > > > > > > > GSL. In the link I sent to you previously:
> > >>> > > > > > > > >
> > >>> > > > > > > > > http://www.gnu.org/software/gsl/
> > >>> > > > > > > > >
> > >>> > > > > > > > > I see there is an email address for help and a
user's
> > >>> mailing
> > >>> > > > list:
> > >>> > > > > > > > >
> > >>> > > > > > > > > help-gsl at gnu.org
> > >>> > > > > > > > > http://mail.gnu.org/mailman/listinfo/help-gsl
> > >>> > > > > > > > >
> > >>> > > > > > > > > I don't know what newer version you got, but
it looks
> > >>> like we
> > >>> > > are
> > >>> > > > > > using
> > >>> > > > > > > > > gsl-1.13 here.
> > >>> > > > > > > > >
> > >>> > > > > > > > > Please let us know if we can help.
> > >>> > > > > > > > >
> > >>> > > > > > > > > Julie
> > >>> > > > > > > > >
> > >>> > > > > > > > > On Wed, Sep 9, 2015 at 2:06 AM, Susana Cardoso
> Pereira
> > >>> via
> > >>> > RT <
> > >>> > > > > > > > > met_help at ucar.edu> wrote:
> > >>> > > > > > > > >
> > >>> > > > > > > > > >
> > >>> > > > > > > > > > <URL:
> > >>> > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > >>> > > > >
> > >>> > > > > > > > > >
> > >>> > > > > > > > > > Hi Julia,
> > >>> > > > > > > > > >
> > >>> > > > > > > > > > Thanks for the support. It was great. I
didn't say
> > >>> anything
> > >>> > > > > because
> > >>> > > > > > > I'm
> > >>> > > > > > > > > > trying to compile the gsl but I'm finding
some
> > >>> > difficulties.
> > >>> > > > I'm
> > >>> > > > > > not
> > >>> > > > > > > > sure
> > >>> > > > > > > > > > if there is an error or only a bug in
running the
> > >>> tests.
> > >>> > > > > > > > > >
> > >>> > > > > > > > > >
> > >>> > > > > > > > > > Thanks
> > >>> > > > > > > > > > Susana
> > >>> > > > > > > > > >
> > >>> > > > > > > > > > On Tue, Sep 8, 2015 at 6:05 PM, Julie
Prestopnik
> via
> > >>> RT <
> > >>> > > > > > > > > met_help at ucar.edu
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > wrote:
> > >>> > > > > > > > > >
> > >>> > > > > > > > > > > Hi Susana. I just wanted to follow up.
Were you
> > >>> able to
> > >>> > > > > > compile a
> > >>> > > > > > > > > more
> > >>> > > > > > > > > > > recent version of GSL and then
successfully
> compile
> > >>> MET
> > >>> > > > > > afterward?
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > > Thanks,
> > >>> > > > > > > > > > > Julie
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > > On Wed, Sep 2, 2015 at 10:12 AM, Julie
> Prestopnik <
> > >>> > > > > > > jpresto at ucar.edu>
> > >>> > > > > > > > > > > wrote:
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > > > Hi Susana. I'm sorry that you're having
> trouble
> > >>> > > compiling
> > >>> > > > > MET.
> > >>> > > > > > > > > Thank
> > >>> > > > > > > > > > > you
> > >>> > > > > > > > > > > > for attaching your config and
make_install log
> > >>> files
> > >>> > and
> > >>> > > > for
> > >>> > > > > > > > checking
> > >>> > > > > > > > > > the
> > >>> > > > > > > > > > > > met_help archives.
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > > I see that you are using gsl-1.5.
> Unfortunately,
> > >>> that
> > >>> > > > older
> > >>> > > > > > > > version
> > >>> > > > > > > > > of
> > >>> > > > > > > > > > > > the GSL software does not come with the
wavelet
> > >>> code
> > >>> > that
> > >>> > > > MET
> > >>> > > > > > > > needs.
> > >>> > > > > > > > > > > > Please download a more recent version of
GSL:
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > > http://www.gnu.org/software/gsl/
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > > and compile that using the instructions
here:
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > >
> > >>> > > > > > > > >
> > >>> > > > > > > >
> > >>> > > > > > >
> > >>> > > > > >
> > >>> > > > >
> > >>> > > >
> > >>> > >
> > >>> >
> > >>>
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > > Then, reconfigure and recompile MET.
Please
> let
> > us
> > >>> > know
> > >>> > > if
> > >>> > > > > you
> > >>> > > > > > > > > > encounter
> > >>> > > > > > > > > > > > any other issues or if that works for
you.
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > > Thanks,
> > >>> > > > > > > > > > > > Julie
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > > On Wed, Sep 2, 2015 at 3:25 AM, Susana
Cardoso
> > >>> Pereira
> > >>> > > via
> > >>> > > > > RT <
> > >>> > > > > > > > > > > > met_help at ucar.edu> wrote:
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > >>
> > >>> > > > > > > > > > > >> Wed Sep 02 03:25:39 2015: Request 73269
was
> > acted
> > >>> > upon.
> > >>> > > > > > > > > > > >> Transaction: Ticket created by
> > >>> susana.cardoso at ua.pt
> > >>> > > > > > > > > > > >> Queue: met_help
> > >>> > > > > > > > > > > >> Subject: fail to compile MET5.0
> > >>> > > > > > > > > > > >> Owner: Nobody
> > >>> > > > > > > > > > > >> Requestors: susana.cardoso at ua.pt
> > >>> > > > > > > > > > > >> Status: new
> > >>> > > > > > > > > > > >> Ticket <URL:
> > >>> > > > > > > > >
> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > > >>
> > >>> > > > > > > > > > > >>
> > >>> > > > > > > > > > > >> Hi,
> > >>> > > > > > > > > > > >> I've downloaded the MET 5 release but
I'm
> having
> > >>> > trouble
> > >>> > > > > > > compiling
> > >>> > > > > > > > > > it. I
> > >>> > > > > > > > > > > >> followed all of your instructions but
fail to
> > see
> > >>> > where
> > >>> > > > the
> > >>> > > > > > > > error's
> > >>> > > > > > > > > > > origin
> > >>> > > > > > > > > > > >> might be.
> > >>> > > > > > > > > > > >> I attach the config and the
make_install log
> > >>> file. I
> > >>> > > also
> > >>> > > > > > > checked
> > >>> > > > > > > > > all
> > >>> > > > > > > > > > > the
> > >>> > > > > > > > > > > >> met_help archives in an attempt to seek
any
> help
> > >>> but
> > >>> > > with
> > >>> > > > no
> > >>> > > > > > > luck.
> > >>> > > > > > > > > > > >>
> > >>> > > > > > > > > > > >> Thanks in advance
> > >>> > > > > > > > > > > >>
> > >>> > > > > > > > > > > >> Susana
> > >>> > > > > > > > > > > >>
> > >>> > > > > > > > > > > >>
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > > > --
> > >>> > > > > > > > > > > > Julie Prestopnik
> > >>> > > > > > > > > > > > National Center for Atmospheric Research
> > >>> > > > > > > > > > > > Research Applications Laboratory
> > >>> > > > > > > > > > > > Phone: 303.497.8399
> > >>> > > > > > > > > > > > Email: jpresto at ucar.edu
> > >>> > > > > > > > > > > >
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > > --
> > >>> > > > > > > > > > > Julie Prestopnik
> > >>> > > > > > > > > > > National Center for Atmospheric Research
> > >>> > > > > > > > > > > Research Applications Laboratory
> > >>> > > > > > > > > > > Phone: 303.497.8399
> > >>> > > > > > > > > > > Email: jpresto at ucar.edu
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > > >
> > >>> > > > > > > > > >
> > >>> > > > > > > > > >
> > >>> > > > > > > > >
> > >>> > > > > > > > >
> > >>> > > > > > > > > --
> > >>> > > > > > > > > Julie Prestopnik
> > >>> > > > > > > > > National Center for Atmospheric Research
> > >>> > > > > > > > > Research Applications Laboratory
> > >>> > > > > > > > > Phone: 303.497.8399
> > >>> > > > > > > > > Email: jpresto at ucar.edu
> > >>> > > > > > > > >
> > >>> > > > > > > > >
> > >>> > > > > > > >
> > >>> > > > > > > >
> > >>> > > > > > >
> > >>> > > > > > >
> > >>> > > > > > > --
> > >>> > > > > > > Julie Prestopnik
> > >>> > > > > > > National Center for Atmospheric Research
> > >>> > > > > > > Research Applications Laboratory
> > >>> > > > > > > Phone: 303.497.8399
> > >>> > > > > > > Email: jpresto at ucar.edu
> > >>> > > > > > >
> > >>> > > > > > >
> > >>> > > > > >
> > >>> > > > > >
> > >>> > > > >
> > >>> > > > >
> > >>> > > >
> > >>> > > >
> > >>> > >
> > >>> > >
> > >>> >
> > >>> >
> > >>>
> > >>>
> > >>
> > >
> >
> >
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
>
------------------------------------------------
Subject: fail to compile MET5.0
From: Susana Cardoso Pereira
Time: Mon Sep 28 03:58:28 2015
Test 2
------------------------------------------------------------------
make clean
export MET_NETCDF=/home/susana/local
export MET_BUFR=/home/susana/local
export MET_GSLINC=/home/susana/software/gsl-1.16/include/gsl
export MET_GSLLIB=/home/susana/software/gsl-1.16/lib
export CC=`which icc`
export CXX=`which icc`
export F77=`which ifort`
./configure --prefix=/home/susana/software/met-5.0 --disable-grib2
--disable-ascii2nc --disable-ensemble_stat --disable-gen_poly_mask
--disable-grid_stat --disable-madis2nc --disable-mode --disable-
mode_analysis --disable-pb2nc --disable-pcp_combine --disable-
plot_data_plane --disable-plot_point_obs --disable-point_stat
--disable-stat_analysis --disable-series_analysis --disable-wwmca
--disable-modis --disable-mode_graphics --disable-gen_circle_mask
--disable-tc_utils
make install >& make_install.log&
tail -f make_install.log
mv config.log config_log-t2
mv make_install.log make_install-t2
tar -cvf t2.tar config_log-t2 make_install-t2
/home/susana/software/met-5.0/src/tools/core/wavelet_stat/*
tar --list --file=t2.tar
Test 3
------------------------------------------------------------------
make clean
export MET_NETCDF=/home/susana/local
export MET_BUFR=/home/susana/local
export MET_GSLINC=/home/susana/software/gsl-1.16/include/gsl
export MET_GSLLIB=/home/susana/software/gsl-1.16/lib
export CC=`which icc`
export CXX=`which icc`
export F77=`which ifort`
./configure --prefix=/home/susana/software/met-5.0 --disable-wavelet-
stat
make install >& make_install.log&
tail -f make_install.log
mv config.log config_log-t3
mv make_install.log make_install-t3
tar -cvf t3.tar config_log-t3 make_install-t3
/home/susana/software/met-5.0/src/tools/core/wavelet_stat/*
tar --list --file=t3.tar
------------------------------------------------
Subject: fail to compile MET5.0
From: John Halley Gotway
Time: Thu Oct 01 14:51:43 2015
Susana,
Yes, Julie and I took a look at the compilation issues your are
having, and
we're pretty stumped. The clear problem is that you're not able to
link to
a version of GSL which includes support for wavelets, as evidenced by
this
linker error message:
/home/susana/software/met-
5.0/src/tools/core/wavelet_stat/wavelet_stat_conf_info.cc:305:
undefined reference to `gsl_wavelet_haar'
That compilation command includes these linker directives:
-L/home/susana/software/gsl-1.16/lib -lgsl -lgslcblas
That's telling the linker to search for the following files:
ls /home/susana/software/gsl-1.16/lib/libgsl.a
/home/susana/software/gsl-1.16/lib/libgslcblas.a
And those files do exist, right? If so, the linker should be finding
them
and using them.
There are a few possibilities:
(1) Those files do not exist. If not, you should recompile GSL into
that
location.
(2) Those files do exist, but the linker is skipping them because
they
are incompatible. They would be incompatible if compiled with a non-
intel
compiler. If this is the case, the linker is finding an older version
of
GSL somewhere else on your system and using it (perhaps
/usr/lib/libgsl.a
or /usr/local/lib/libgsl.a).
(3) Those file exist and were compiled with intel, but the linker is
skipping them for some unknown reason!
You try running this command to search for instances of that library:
locate libgsl.a
Thanks,
John
On Mon, Sep 28, 2015 at 3:50 AM, Susana Cardoso Pereira via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
>
> Hi John,
>
> Sorry for the late replay but I was performing some tests on my
own. You
> see, I really need to have wavelat_stat working because it is an
important
> part of the study that I'm conducting.
>
> I'd installed successfully MET in previous versions (v3.1 and 4.1)
but
> failed to install wavelet_stat in these versions. So, I decided to
give it
> one more try with the latest version. Again, I installed all but
wavelet
> _stat.
>
> I understand that you're busy but I ask you for another look at my
files. I
> attached 2 tar files with the log files for the test2 (only wavelet)
and
> test3 (all except wavelet_stat). I also added a txt file with all
the
> commands that I used.
>
> Thanks,
> Susana
>
>
> On Fri, Sep 18, 2015 at 11:13 PM, Julie Prestopnik via RT <
> met_help at ucar.edu
> > wrote:
>
> > Hi Susana.
> >
> > Thank you for sending along the output. Unfortunately, I wasn't
able to
> > determine what the problem is from the output you sent. John
mentioned
> > that he was able to compile GSL-1.16 using the -O0 option as you
did and
> > then recompile MET successfully, but with the GNU compilers.
Today I was
> > able to successfully compile GSL-1.16 and then recompile MET using
the
> > Intel compilers.
> >
> > Since we are not able to recreate the problem you are experiencing
there
> is
> > not much else that we can do to help. You may find that a sys
admin
> could
> > help you debug these problems.
> >
> > Thanks,
> > Julie
> >
> >
> > I recompiled GSL-1.16 using the -O0 option just as you did, and
then
> > >>> recompiled MET. It all worked fine, but I am using the GNU
compilers
> > >>> rather than the Intel ones.
> >
> > On Thu, Sep 17, 2015 at 6:31 AM, Susana Cardoso Pereira via RT <
> > met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> > >
> > > Hello,
> > >
> > > Now the files as a tarball.
> > >
> > > Susana
> > >
> > > On Thu, Sep 17, 2015 at 1:08 PM, Susana Cardoso Pereira <
> > > susana.cardoso at ua.pt> wrote:
> > >
> > > > Hello John,
> > > >
> > > > Here are the files that you asked after yours instructions.
> > > >
> > > > Susana
> > > >
> > > > On Wed, Sep 16, 2015 at 8:47 PM, Susana Cardoso Pereira <
> > > > susana.cardoso at ua.pt> wrote:
> > > >
> > > >> Hi Jonh,
> > > >>
> > > >>
> > > >> Thank you so much for your prompt response. I will
implemented it
> and
> > > let
> > > >> you know the news.
> > > >>
> > > >> Susana
> > > >>
> > > >>
> > > >> On Wed, Sep 16, 2015 at 8:22 PM, John Halley Gotway via RT <
> > > >> met_help at ucar.edu> wrote:
> > > >>
> > > >>> Susana,
> > > >>>
> > > >>> I recompiled GSL-1.16 using the -O0 option just as you did,
and
> then
> > > >>> recompiled MET. It all worked fine, but I am using the GNU
> compilers
> > > >>> rather than the Intel ones.
> > > >>>
> > > >>> It looks like all your paths are correct, but I'm guessing
the
> linker
> > > is
> > > >>> skipping the GSL-1.16 library you're using for some reason.
One
> way
> > to
> > > >>> check this theory is to print out the linker map. Try
this...
> > > >>>
> > > >>> cd /home/susana/software/met-5.0
> > > >>> make clean
> > > >>> export CC=`which icc`
> > > >>> export CXX=`which icc`
> > > >>> export F77=`which ifort`
> > > >>> export LDFLAGS='-Xlinker -M'
> > > >>> ./configure --prefix=/home/susana/software/met-5.0
> > > >>> make install >& make_install.log
> > > >>>
> > > >>> Running configure with that LDFLAGS setting tells the linker
to
> print
> > > >>> it's
> > > >>> map. The output from make should increase from about 1500
lines to
> > > over
> > > >>> 300,000 lines.
> > > >>>
> > > >>> Please send me the resulting make_install.log file.
> > > >>>
> > > >>> Thanks,
> > > >>> John
> > > >>>
> > > >>>
> > > >>> On Wed, Sep 16, 2015 at 12:05 PM, Susana Cardoso Pereira via
RT <
> > > >>> met_help at ucar.edu> wrote:
> > > >>>
> > > >>> >
> > > >>> > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> > > >>> >
> > > >>> > Hello John
> > > >>> >
> > > >>> > Ok. That solution I've already tested. The only difference
is
> that
> > I
> > > >>> can
> > > >>> > only compile gsl with no optimization flags.
> > > >>> >
> > > >>> > These are the cmds that I used with gsl:
> > > >>> >
> > > >>> > make clean
> > > >>> > export CC=`which icc`
> > > >>> > export CXX=`which icc`
> > > >>> > export F77=`which ifort`
> > > >>> > ./configure CFLAGS="-O0"
> --prefix=/home/susana/software/gsl-1.16
> > > >>> > make
> > > >>> > make check > log 2>&1
> > > >>> > make install
> > > >>> >
> > > >>> >
> > > >>> > Susana
> > > >>> >
> > > >>> > On Wed, Sep 16, 2015 at 6:49 PM, John Halley Gotway via RT
<
> > > >>> > met_help at ucar.edu> wrote:
> > > >>> >
> > > >>> > > Susana,
> > > >>> > >
> > > >>> > > I just successfully recompiled MET using GSL-1.16, so we
should
> > be
> > > >>> able
> > > >>> > to
> > > >>> > > make it work.
> > > >>> > >
> > > >>> > > Let's try recompiling GSL first...
> > > >>> > >
> > > >>> > > cd /home/susana/software/gsl-1.16
> > > >>> > > make clean
> > > >>> > > setenv CC `which icc`
> > > >>> > > ./configure --prefix=home/susana/software/gsl-1.16
> > > >>> > > make
> > > >>> > > make install
> > > >>> > >
> > > >>> > > And then recompile MET:
> > > >>> > >
> > > >>> > > cd /home/susana/software/met-5.0
> > > >>> > > make clean
> > > >>> > > make install >& make_install.log
> > > >>> > >
> > > >>> > > Please let me know how that goes.
> > > >>> > >
> > > >>> > > Thanks,
> > > >>> > > John
> > > >>> > >
> > > >>> > >
> > > >>> > >
> > > >>> > > On Wed, Sep 16, 2015 at 11:29 AM, Susana Cardoso Pereira
via
> RT <
> > > >>> > > met_help at ucar.edu> wrote:
> > > >>> > >
> > > >>> > > >
> > > >>> > > > <URL:
> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > >
> > > >>> > > >
> > > >>> > > > Hi John,
> > > >>> > > >
> > > >>> > > > Susana
> > > >>> > > > Welcome abord. So, I've followed your instructions
and I
> > still
> > > >>> have
> > > >>> > > > issues with MET. I attach the config ant make install
log
> > files,
> > > >>> just
> > > >>> > in
> > > >>> > > > case.
> > > >>> > > >
> > > >>> > > > Thanks
> > > >>> > > >
> > > >>> > > > PS: I'm using gsl-1.16
> > > >>> > > >
> > > >>> > > > On Wed, Sep 16, 2015 at 4:45 PM, John Halley Gotway
via RT <
> > > >>> > > > met_help at ucar.edu> wrote:
> > > >>> > > >
> > > >>> > > > > Hello Susana,
> > > >>> > > > >
> > > >>> > > > > My name is John Halley Gotway and I work with Julie.
> Thought
> > > I'd
> > > >>> > jump
> > > >>> > > in
> > > >>> > > > > here with a suggestion. I think you should try
recompiling
> > MET
> > > >>> with
> > > >>> > > icc
> > > >>> > > > > instead of icpc. So please execute the following
> commands...
> > > >>> > > > >
> > > >>> > > > > cd /home/susana/software/met-5.0
> > > >>> > > > > make clean
> > > >>> > > > > export CC=`which icc`
> > > >>> > > > > export CXX=`which icc`
> > > >>> > > > > export F77=`which ifort`
> > > >>> > > > > ./configure --prefix=/home/susana/software/met-
5.0
> > > >>> > > > > make install >& make_install.log
> > > >>> > > > >
> > > >>> > > > > Please let us know how it goes.
> > > >>> > > > >
> > > >>> > > > > Thanks,
> > > >>> > > > > John
> > > >>> > > > >
> > > >>> > > > > On Wed, Sep 16, 2015 at 4:11 AM, Susana Cardoso
Pereira via
> > RT
> > > <
> > > >>> > > > > met_help at ucar.edu> wrote:
> > > >>> > > > >
> > > >>> > > > > >
> > > >>> > > > > > <URL:
> > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > >>> >
> > > >>> > > > > >
> > > >>> > > > > > Hi Julie,
> > > >>> > > > > >
> > > >>> > > > > > I follow yours instructions: change de compiler
from icpc
> > to
> > > >>> icc
> > > >>> > > > (export
> > > >>> > > > > > CXX= icc) with gsl1.13 (btw I was using gsl1.16)
and I've
> > > >>> still got
> > > >>> > > the
> > > >>> > > > > > same error. Two notes: I could only compile the
gsl lib
> > with
> > > >>> > > > CFLAGS="-O0"
> > > >>> > > > > > so I tried to compile the met with the same flags.
The
> > result
> > > >>> > > remained
> > > >>> > > > a
> > > >>> > > > > > flop.
> > > >>> > > > > >
> > > >>> > > > > > So, it seems to me that the error might be, either
in the
> > MET
> > > >>> code
> > > >>> > or
> > > >>> > > > > > during the gsl's compile process with no
optmization).
> > > >>> > > > > >
> > > >>> > > > > > My programming skills are low so, at this point, I
would
> be
> > > >>> very
> > > >>> > > > grateful
> > > >>> > > > > > with your help before contacting the gsl's help
services
> > (you
> > > >>> told
> > > >>> > > me,
> > > >>> > > > in
> > > >>> > > > > > previous messages, that the gsl lib list of files
seemed
> > ok -
> > > >>> no
> > > >>> > lib
> > > >>> > > > > > missing).
> > > >>> > > > > >
> > > >>> > > > > > Wainting for your instructions,
> > > >>> > > > > >
> > > >>> > > > > > Susana
> > > >>> > > > > >
> > > >>> > > > > > On Tue, Sep 15, 2015 at 5:39 PM, Julie Prestopnik
via RT
> <
> > > >>> > > > > > met_help at ucar.edu>
> > > >>> > > > > > wrote:
> > > >>> > > > > >
> > > >>> > > > > > > Hi Susana.
> > > >>> > > > > > >
> > > >>> > > > > > > Thank you for sending all of the attachments!
The
> > library
> > > >>> and
> > > >>> > > > include
> > > >>> > > > > > > files that you have for gsl look good. I don't
think
> > there
> > > >>> are
> > > >>> > any
> > > >>> > > > > > missing
> > > >>> > > > > > > files.
> > > >>> > > > > > >
> > > >>> > > > > > > However, I see that you used "icc" to build GSL,
but
> > "icpc"
> > > >>> to
> > > >>> > > build
> > > >>> > > > > MET.
> > > >>> > > > > > > Please try using "icc" to build MET as well.
> > > >>> > > > > > >
> > > >>> > > > > > > So please use:
> > > >>> > > > > > >
> > > >>> > > > > > > setenv CXX /path/to/icc
> > > >>> > > > > > >
> > > >>> > > > > > > or
> > > >>> > > > > > >
> > > >>> > > > > > > export CXX=/path/to/icc
> > > >>> > > > > > >
> > > >>> > > > > > > depending on which shell you're using, replacing
> > > >>> "/path/to/icc"
> > > >>> > > with
> > > >>> > > > > the
> > > >>> > > > > > > full path to your icc compiler.
> > > >>> > > > > > >
> > > >>> > > > > > > Then run configure and make install again:
> > > >>> > > > > > >
> > > >>> > > > > > > ./configure --prefix=/home/susana/software/met-
5.0
> > > >>> > > > > > > make install >& make_install.log &
> > > >>> > > > > > >
> > > >>> > > > > > > Please let me know if that helps solve the
problem.
> > > >>> > > > > > >
> > > >>> > > > > > > Thanks,
> > > >>> > > > > > > Julie
> > > >>> > > > > > >
> > > >>> > > > > > > On Mon, Sep 14, 2015 at 4:07 AM, Susana Cardoso
Pereira
> > via
> > > >>> RT <
> > > >>> > > > > > > met_help at ucar.edu> wrote:
> > > >>> > > > > > >
> > > >>> > > > > > > >
> > > >>> > > > > > > > <URL:
> > > >>> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > >>> > >
> > > >>> > > > > > > >
> > > >>> > > > > > > > Hi Julie,
> > > >>> > > > > > > >
> > > >>> > > > > > > > Sorry, for the late response but I've been out
of the
> > > >>> office.
> > > >>> > > > Thanks
> > > >>> > > > > > for
> > > >>> > > > > > > > support you've been giving me. I really
appreciate
> it.
> > > >>> > > > > > > > I've successfully installed the gsl-1.16
package but
> no
> > > >>> luck
> > > >>> > with
> > > >>> > > > the
> > > >>> > > > > > > > met-5. I still have the same error message
during the
> > > make
> > > >>> > > install
> > > >>> > > > > > step.
> > > >>> > > > > > > > Here's some notes on what I've done:
> > > >>> > > > > > > >
> > > >>> > > > > > > > 1 – gsl
> > > >>> > > > > > > > I had some trouble running the tests but
solved it
> > > >>> changing the
> > > >>> > > > > CFLAGS
> > > >>> > > > > > > > (./configure CFLAGS="-O0" –prefix=`pwd`). I
didn't
> get
> > > any
> > > >>> > error
> > > >>> > > > > > message
> > > >>> > > > > > > > but can you check if there are missing some
files in
> > the
> > > >>> gsl
> > > >>> > > > lib/inc
> > > >>> > > > > > > > directory? I attatch the list of files in
those dirs.
> > > >>> > > > > > > >
> > > >>> > > > > > > > 2 – met-5
> > > >>> > > > > > > > I fail to tell you that I've also download the
> > met-5.0's
> > > >>> > patches.
> > > >>> > > > > > > > I've got the same mistake, during the make
install
> > step,
> > > >>> when
> > > >>> > > > trying
> > > >>> > > > > to
> > > >>> > > > > > > > compile with the gsl_wavelet (see attach)
> > > >>> > > > > > > >
> > > >>> > > > > > > > Can you help me?
> > > >>> > > > > > > >
> > > >>> > > > > > > > Thanks in advance.
> > > >>> > > > > > > >
> > > >>> > > > > > > > Susana
> > > >>> > > > > > > >
> > > >>> > > > > > > >
> > > >>> > > > > > > > On Wed, Sep 9, 2015 at 6:02 PM, Julie
Prestopnik via
> > RT <
> > > >>> > > > > > > met_help at ucar.edu
> > > >>> > > > > > > > >
> > > >>> > > > > > > > wrote:
> > > >>> > > > > > > >
> > > >>> > > > > > > > > Hi Susana. I'm sorry that you are
encountering
> > > >>> difficulties
> > > >>> > > with
> > > >>> > > > > > > > compiling
> > > >>> > > > > > > > > GSL. In the link I sent to you previously:
> > > >>> > > > > > > > >
> > > >>> > > > > > > > > http://www.gnu.org/software/gsl/
> > > >>> > > > > > > > >
> > > >>> > > > > > > > > I see there is an email address for help and
a
> user's
> > > >>> mailing
> > > >>> > > > list:
> > > >>> > > > > > > > >
> > > >>> > > > > > > > > help-gsl at gnu.org
> > > >>> > > > > > > > > http://mail.gnu.org/mailman/listinfo/help-
gsl
> > > >>> > > > > > > > >
> > > >>> > > > > > > > > I don't know what newer version you got, but
it
> looks
> > > >>> like we
> > > >>> > > are
> > > >>> > > > > > using
> > > >>> > > > > > > > > gsl-1.13 here.
> > > >>> > > > > > > > >
> > > >>> > > > > > > > > Please let us know if we can help.
> > > >>> > > > > > > > >
> > > >>> > > > > > > > > Julie
> > > >>> > > > > > > > >
> > > >>> > > > > > > > > On Wed, Sep 9, 2015 at 2:06 AM, Susana
Cardoso
> > Pereira
> > > >>> via
> > > >>> > RT <
> > > >>> > > > > > > > > met_help at ucar.edu> wrote:
> > > >>> > > > > > > > >
> > > >>> > > > > > > > > >
> > > >>> > > > > > > > > > <URL:
> > > >>> > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > >>> > > > >
> > > >>> > > > > > > > > >
> > > >>> > > > > > > > > > Hi Julia,
> > > >>> > > > > > > > > >
> > > >>> > > > > > > > > > Thanks for the support. It was great. I
didn't
> say
> > > >>> anything
> > > >>> > > > > because
> > > >>> > > > > > > I'm
> > > >>> > > > > > > > > > trying to compile the gsl but I'm finding
some
> > > >>> > difficulties.
> > > >>> > > > I'm
> > > >>> > > > > > not
> > > >>> > > > > > > > sure
> > > >>> > > > > > > > > > if there is an error or only a bug in
running the
> > > >>> tests.
> > > >>> > > > > > > > > >
> > > >>> > > > > > > > > >
> > > >>> > > > > > > > > > Thanks
> > > >>> > > > > > > > > > Susana
> > > >>> > > > > > > > > >
> > > >>> > > > > > > > > > On Tue, Sep 8, 2015 at 6:05 PM, Julie
Prestopnik
> > via
> > > >>> RT <
> > > >>> > > > > > > > > met_help at ucar.edu
> > > >>> > > > > > > > > > >
> > > >>> > > > > > > > > > wrote:
> > > >>> > > > > > > > > >
> > > >>> > > > > > > > > > > Hi Susana. I just wanted to follow up.
Were
> you
> > > >>> able to
> > > >>> > > > > > compile a
> > > >>> > > > > > > > > more
> > > >>> > > > > > > > > > > recent version of GSL and then
successfully
> > compile
> > > >>> MET
> > > >>> > > > > > afterward?
> > > >>> > > > > > > > > > >
> > > >>> > > > > > > > > > > Thanks,
> > > >>> > > > > > > > > > > Julie
> > > >>> > > > > > > > > > >
> > > >>> > > > > > > > > > > On Wed, Sep 2, 2015 at 10:12 AM, Julie
> > Prestopnik <
> > > >>> > > > > > > jpresto at ucar.edu>
> > > >>> > > > > > > > > > > wrote:
> > > >>> > > > > > > > > > >
> > > >>> > > > > > > > > > > > Hi Susana. I'm sorry that you're
having
> > trouble
> > > >>> > > compiling
> > > >>> > > > > MET.
> > > >>> > > > > > > > > Thank
> > > >>> > > > > > > > > > > you
> > > >>> > > > > > > > > > > > for attaching your config and
make_install
> log
> > > >>> files
> > > >>> > and
> > > >>> > > > for
> > > >>> > > > > > > > checking
> > > >>> > > > > > > > > > the
> > > >>> > > > > > > > > > > > met_help archives.
> > > >>> > > > > > > > > > > >
> > > >>> > > > > > > > > > > > I see that you are using gsl-1.5.
> > Unfortunately,
> > > >>> that
> > > >>> > > > older
> > > >>> > > > > > > > version
> > > >>> > > > > > > > > of
> > > >>> > > > > > > > > > > > the GSL software does not come with
the
> wavelet
> > > >>> code
> > > >>> > that
> > > >>> > > > MET
> > > >>> > > > > > > > needs.
> > > >>> > > > > > > > > > > > Please download a more recent version
of GSL:
> > > >>> > > > > > > > > > > >
> > > >>> > > > > > > > > > > > http://www.gnu.org/software/gsl/
> > > >>> > > > > > > > > > > >
> > > >>> > > > > > > > > > > > and compile that using the
instructions here:
> > > >>> > > > > > > > > > > >
> > > >>> > > > > > > > > > > >
> > > >>> > > > > > > > > > > >
> > > >>> > > > > > > > > > >
> > > >>> > > > > > > > > >
> > > >>> > > > > > > > >
> > > >>> > > > > > > >
> > > >>> > > > > > >
> > > >>> > > > > >
> > > >>> > > > >
> > > >>> > > >
> > > >>> > >
> > > >>> >
> > > >>>
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > >>> > > > > > > > > > > >
> > > >>> > > > > > > > > > > > Then, reconfigure and recompile MET.
Please
> > let
> > > us
> > > >>> > know
> > > >>> > > if
> > > >>> > > > > you
> > > >>> > > > > > > > > > encounter
> > > >>> > > > > > > > > > > > any other issues or if that works for
you.
> > > >>> > > > > > > > > > > >
> > > >>> > > > > > > > > > > > Thanks,
> > > >>> > > > > > > > > > > > Julie
> > > >>> > > > > > > > > > > >
> > > >>> > > > > > > > > > > >
> > > >>> > > > > > > > > > > > On Wed, Sep 2, 2015 at 3:25 AM, Susana
> Cardoso
> > > >>> Pereira
> > > >>> > > via
> > > >>> > > > > RT <
> > > >>> > > > > > > > > > > > met_help at ucar.edu> wrote:
> > > >>> > > > > > > > > > > >
> > > >>> > > > > > > > > > > >>
> > > >>> > > > > > > > > > > >> Wed Sep 02 03:25:39 2015: Request
73269 was
> > > acted
> > > >>> > upon.
> > > >>> > > > > > > > > > > >> Transaction: Ticket created by
> > > >>> susana.cardoso at ua.pt
> > > >>> > > > > > > > > > > >> Queue: met_help
> > > >>> > > > > > > > > > > >> Subject: fail to compile MET5.0
> > > >>> > > > > > > > > > > >> Owner: Nobody
> > > >>> > > > > > > > > > > >> Requestors: susana.cardoso at ua.pt
> > > >>> > > > > > > > > > > >> Status: new
> > > >>> > > > > > > > > > > >> Ticket <URL:
> > > >>> > > > > > > > >
> > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > >>> > > > > > > > > > >
> > > >>> > > > > > > > > > > >>
> > > >>> > > > > > > > > > > >>
> > > >>> > > > > > > > > > > >> Hi,
> > > >>> > > > > > > > > > > >> I've downloaded the MET 5 release but
I'm
> > having
> > > >>> > trouble
> > > >>> > > > > > > compiling
> > > >>> > > > > > > > > > it. I
> > > >>> > > > > > > > > > > >> followed all of your instructions but
fail
> to
> > > see
> > > >>> > where
> > > >>> > > > the
> > > >>> > > > > > > > error's
> > > >>> > > > > > > > > > > origin
> > > >>> > > > > > > > > > > >> might be.
> > > >>> > > > > > > > > > > >> I attach the config and the
make_install log
> > > >>> file. I
> > > >>> > > also
> > > >>> > > > > > > checked
> > > >>> > > > > > > > > all
> > > >>> > > > > > > > > > > the
> > > >>> > > > > > > > > > > >> met_help archives in an attempt to
seek any
> > help
> > > >>> but
> > > >>> > > with
> > > >>> > > > no
> > > >>> > > > > > > luck.
> > > >>> > > > > > > > > > > >>
> > > >>> > > > > > > > > > > >> Thanks in advance
> > > >>> > > > > > > > > > > >>
> > > >>> > > > > > > > > > > >> Susana
> > > >>> > > > > > > > > > > >>
> > > >>> > > > > > > > > > > >>
> > > >>> > > > > > > > > > > >
> > > >>> > > > > > > > > > > >
> > > >>> > > > > > > > > > > > --
> > > >>> > > > > > > > > > > > Julie Prestopnik
> > > >>> > > > > > > > > > > > National Center for Atmospheric
Research
> > > >>> > > > > > > > > > > > Research Applications Laboratory
> > > >>> > > > > > > > > > > > Phone: 303.497.8399
> > > >>> > > > > > > > > > > > Email: jpresto at ucar.edu
> > > >>> > > > > > > > > > > >
> > > >>> > > > > > > > > > >
> > > >>> > > > > > > > > > >
> > > >>> > > > > > > > > > >
> > > >>> > > > > > > > > > > --
> > > >>> > > > > > > > > > > Julie Prestopnik
> > > >>> > > > > > > > > > > National Center for Atmospheric Research
> > > >>> > > > > > > > > > > Research Applications Laboratory
> > > >>> > > > > > > > > > > Phone: 303.497.8399
> > > >>> > > > > > > > > > > Email: jpresto at ucar.edu
> > > >>> > > > > > > > > > >
> > > >>> > > > > > > > > > >
> > > >>> > > > > > > > > >
> > > >>> > > > > > > > > >
> > > >>> > > > > > > > >
> > > >>> > > > > > > > >
> > > >>> > > > > > > > > --
> > > >>> > > > > > > > > Julie Prestopnik
> > > >>> > > > > > > > > National Center for Atmospheric Research
> > > >>> > > > > > > > > Research Applications Laboratory
> > > >>> > > > > > > > > Phone: 303.497.8399
> > > >>> > > > > > > > > Email: jpresto at ucar.edu
> > > >>> > > > > > > > >
> > > >>> > > > > > > > >
> > > >>> > > > > > > >
> > > >>> > > > > > > >
> > > >>> > > > > > >
> > > >>> > > > > > >
> > > >>> > > > > > > --
> > > >>> > > > > > > Julie Prestopnik
> > > >>> > > > > > > National Center for Atmospheric Research
> > > >>> > > > > > > Research Applications Laboratory
> > > >>> > > > > > > Phone: 303.497.8399
> > > >>> > > > > > > Email: jpresto at ucar.edu
> > > >>> > > > > > >
> > > >>> > > > > > >
> > > >>> > > > > >
> > > >>> > > > > >
> > > >>> > > > >
> > > >>> > > > >
> > > >>> > > >
> > > >>> > > >
> > > >>> > >
> > > >>> > >
> > > >>> >
> > > >>> >
> > > >>>
> > > >>>
> > > >>
> > > >
> > >
> > >
> >
> >
> > --
> > Julie Prestopnik
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Phone: 303.497.8399
> > Email: jpresto at ucar.edu
> >
> >
>
>
------------------------------------------------
Subject: fail to compile MET5.0
From: Susana Cardoso Pereira
Time: Fri Oct 02 02:35:47 2015
Hi John & Julie,
Thank you for being help me. Possibility (1) can be rule out. Yes,
those
files exist. 😁 I'd checked and even used a few code lines, from an
example, to test if gsl wavelet was working/linking.
They both worked -
icc/gcc - I/home/susana/software/gsl-1.16/include/gsl
-L/home/susana/software/gsl-1.16/lib main.c -o main -lgsl -lgslcblas
-lm
When I do a "locate libgsl.a " I got for an anwser
"/usr/lib64/libgsl.a".
So, I go for possibility (2) or (3) and that's something that I need
to
work out with the system administrator. Even though I failed to see
why
the above example worked and MET failed - I think that the linking
command
line it's similar but I'm not a computing expertise.
Thanks so much for taking the time and dedication to help me with my
problem. I'm grateful.
Best wishes,
Susana
On Thu, Oct 1, 2015 at 9:51 PM, John Halley Gotway via RT
<met_help at ucar.edu
> wrote:
> Susana,
>
> Yes, Julie and I took a look at the compilation issues your are
having, and
> we're pretty stumped. The clear problem is that you're not able to
link to
> a version of GSL which includes support for wavelets, as evidenced
by this
> linker error message:
>
>
> /home/susana/software/met-
5.0/src/tools/core/wavelet_stat/wavelet_stat_conf_info.cc:305:
> undefined reference to `gsl_wavelet_haar'
>
> That compilation command includes these linker directives:
> -L/home/susana/software/gsl-1.16/lib -lgsl -lgslcblas
>
> That's telling the linker to search for the following files:
> ls /home/susana/software/gsl-1.16/lib/libgsl.a
> /home/susana/software/gsl-1.16/lib/libgslcblas.a
>
> And those files do exist, right? If so, the linker should be
finding them
> and using them.
>
> There are a few possibilities:
>
> (1) Those files do not exist. If not, you should recompile GSL
into that
> location.
>
> (2) Those files do exist, but the linker is skipping them because
they
> are incompatible. They would be incompatible if compiled with a
non-intel
> compiler. If this is the case, the linker is finding an older
version of
> GSL somewhere else on your system and using it (perhaps
/usr/lib/libgsl.a
> or /usr/local/lib/libgsl.a).
>
> (3) Those file exist and were compiled with intel, but the linker
is
> skipping them for some unknown reason!
>
> You try running this command to search for instances of that
library:
> locate libgsl.a
>
> Thanks,
> John
>
>
>
>
>
>
> On Mon, Sep 28, 2015 at 3:50 AM, Susana Cardoso Pereira via RT <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269 >
> >
> > Hi John,
> >
> > Sorry for the late replay but I was performing some tests on my
own. You
> > see, I really need to have wavelat_stat working because it is an
> important
> > part of the study that I'm conducting.
> >
> > I'd installed successfully MET in previous versions (v3.1 and 4.1)
but
> > failed to install wavelet_stat in these versions. So, I decided to
give
> it
> > one more try with the latest version. Again, I installed all but
wavelet
> > _stat.
> >
> > I understand that you're busy but I ask you for another look at my
> files. I
> > attached 2 tar files with the log files for the test2 (only
wavelet) and
> > test3 (all except wavelet_stat). I also added a txt file with all
the
> > commands that I used.
> >
> > Thanks,
> > Susana
> >
> >
> > On Fri, Sep 18, 2015 at 11:13 PM, Julie Prestopnik via RT <
> > met_help at ucar.edu
> > > wrote:
> >
> > > Hi Susana.
> > >
> > > Thank you for sending along the output. Unfortunately, I wasn't
able
> to
> > > determine what the problem is from the output you sent. John
mentioned
> > > that he was able to compile GSL-1.16 using the -O0 option as you
did
> and
> > > then recompile MET successfully, but with the GNU compilers.
Today I
> was
> > > able to successfully compile GSL-1.16 and then recompile MET
using the
> > > Intel compilers.
> > >
> > > Since we are not able to recreate the problem you are
experiencing
> there
> > is
> > > not much else that we can do to help. You may find that a sys
admin
> > could
> > > help you debug these problems.
> > >
> > > Thanks,
> > > Julie
> > >
> > >
> > > I recompiled GSL-1.16 using the -O0 option just as you did, and
then
> > > >>> recompiled MET. It all worked fine, but I am using the GNU
> compilers
> > > >>> rather than the Intel ones.
> > >
> > > On Thu, Sep 17, 2015 at 6:31 AM, Susana Cardoso Pereira via RT <
> > > met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
>
> > > >
> > > > Hello,
> > > >
> > > > Now the files as a tarball.
> > > >
> > > > Susana
> > > >
> > > > On Thu, Sep 17, 2015 at 1:08 PM, Susana Cardoso Pereira <
> > > > susana.cardoso at ua.pt> wrote:
> > > >
> > > > > Hello John,
> > > > >
> > > > > Here are the files that you asked after yours instructions.
> > > > >
> > > > > Susana
> > > > >
> > > > > On Wed, Sep 16, 2015 at 8:47 PM, Susana Cardoso Pereira <
> > > > > susana.cardoso at ua.pt> wrote:
> > > > >
> > > > >> Hi Jonh,
> > > > >>
> > > > >>
> > > > >> Thank you so much for your prompt response. I will
implemented it
> > and
> > > > let
> > > > >> you know the news.
> > > > >>
> > > > >> Susana
> > > > >>
> > > > >>
> > > > >> On Wed, Sep 16, 2015 at 8:22 PM, John Halley Gotway via RT
<
> > > > >> met_help at ucar.edu> wrote:
> > > > >>
> > > > >>> Susana,
> > > > >>>
> > > > >>> I recompiled GSL-1.16 using the -O0 option just as you
did, and
> > then
> > > > >>> recompiled MET. It all worked fine, but I am using the
GNU
> > compilers
> > > > >>> rather than the Intel ones.
> > > > >>>
> > > > >>> It looks like all your paths are correct, but I'm guessing
the
> > linker
> > > > is
> > > > >>> skipping the GSL-1.16 library you're using for some
reason. One
> > way
> > > to
> > > > >>> check this theory is to print out the linker map. Try
this...
> > > > >>>
> > > > >>> cd /home/susana/software/met-5.0
> > > > >>> make clean
> > > > >>> export CC=`which icc`
> > > > >>> export CXX=`which icc`
> > > > >>> export F77=`which ifort`
> > > > >>> export LDFLAGS='-Xlinker -M'
> > > > >>> ./configure --prefix=/home/susana/software/met-5.0
> > > > >>> make install >& make_install.log
> > > > >>>
> > > > >>> Running configure with that LDFLAGS setting tells the
linker to
> > print
> > > > >>> it's
> > > > >>> map. The output from make should increase from about 1500
lines
> to
> > > > over
> > > > >>> 300,000 lines.
> > > > >>>
> > > > >>> Please send me the resulting make_install.log file.
> > > > >>>
> > > > >>> Thanks,
> > > > >>> John
> > > > >>>
> > > > >>>
> > > > >>> On Wed, Sep 16, 2015 at 12:05 PM, Susana Cardoso Pereira
via RT <
> > > > >>> met_help at ucar.edu> wrote:
> > > > >>>
> > > > >>> >
> > > > >>> > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> >
> > > > >>> >
> > > > >>> > Hello John
> > > > >>> >
> > > > >>> > Ok. That solution I've already tested. The only
difference is
> > that
> > > I
> > > > >>> can
> > > > >>> > only compile gsl with no optimization flags.
> > > > >>> >
> > > > >>> > These are the cmds that I used with gsl:
> > > > >>> >
> > > > >>> > make clean
> > > > >>> > export CC=`which icc`
> > > > >>> > export CXX=`which icc`
> > > > >>> > export F77=`which ifort`
> > > > >>> > ./configure CFLAGS="-O0"
> > --prefix=/home/susana/software/gsl-1.16
> > > > >>> > make
> > > > >>> > make check > log 2>&1
> > > > >>> > make install
> > > > >>> >
> > > > >>> >
> > > > >>> > Susana
> > > > >>> >
> > > > >>> > On Wed, Sep 16, 2015 at 6:49 PM, John Halley Gotway via
RT <
> > > > >>> > met_help at ucar.edu> wrote:
> > > > >>> >
> > > > >>> > > Susana,
> > > > >>> > >
> > > > >>> > > I just successfully recompiled MET using GSL-1.16, so
we
> should
> > > be
> > > > >>> able
> > > > >>> > to
> > > > >>> > > make it work.
> > > > >>> > >
> > > > >>> > > Let's try recompiling GSL first...
> > > > >>> > >
> > > > >>> > > cd /home/susana/software/gsl-1.16
> > > > >>> > > make clean
> > > > >>> > > setenv CC `which icc`
> > > > >>> > > ./configure --prefix=home/susana/software/gsl-1.16
> > > > >>> > > make
> > > > >>> > > make install
> > > > >>> > >
> > > > >>> > > And then recompile MET:
> > > > >>> > >
> > > > >>> > > cd /home/susana/software/met-5.0
> > > > >>> > > make clean
> > > > >>> > > make install >& make_install.log
> > > > >>> > >
> > > > >>> > > Please let me know how that goes.
> > > > >>> > >
> > > > >>> > > Thanks,
> > > > >>> > > John
> > > > >>> > >
> > > > >>> > >
> > > > >>> > >
> > > > >>> > > On Wed, Sep 16, 2015 at 11:29 AM, Susana Cardoso
Pereira via
> > RT <
> > > > >>> > > met_help at ucar.edu> wrote:
> > > > >>> > >
> > > > >>> > > >
> > > > >>> > > > <URL:
> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > >
> > > > >>> > > >
> > > > >>> > > > Hi John,
> > > > >>> > > >
> > > > >>> > > > Susana
> > > > >>> > > > Welcome abord. So, I've followed your instructions
and I
> > > still
> > > > >>> have
> > > > >>> > > > issues with MET. I attach the config ant make
install log
> > > files,
> > > > >>> just
> > > > >>> > in
> > > > >>> > > > case.
> > > > >>> > > >
> > > > >>> > > > Thanks
> > > > >>> > > >
> > > > >>> > > > PS: I'm using gsl-1.16
> > > > >>> > > >
> > > > >>> > > > On Wed, Sep 16, 2015 at 4:45 PM, John Halley Gotway
via RT
> <
> > > > >>> > > > met_help at ucar.edu> wrote:
> > > > >>> > > >
> > > > >>> > > > > Hello Susana,
> > > > >>> > > > >
> > > > >>> > > > > My name is John Halley Gotway and I work with
Julie.
> > Thought
> > > > I'd
> > > > >>> > jump
> > > > >>> > > in
> > > > >>> > > > > here with a suggestion. I think you should try
> recompiling
> > > MET
> > > > >>> with
> > > > >>> > > icc
> > > > >>> > > > > instead of icpc. So please execute the following
> > commands...
> > > > >>> > > > >
> > > > >>> > > > > cd /home/susana/software/met-5.0
> > > > >>> > > > > make clean
> > > > >>> > > > > export CC=`which icc`
> > > > >>> > > > > export CXX=`which icc`
> > > > >>> > > > > export F77=`which ifort`
> > > > >>> > > > > ./configure --prefix=/home/susana/software/met-
5.0
> > > > >>> > > > > make install >& make_install.log
> > > > >>> > > > >
> > > > >>> > > > > Please let us know how it goes.
> > > > >>> > > > >
> > > > >>> > > > > Thanks,
> > > > >>> > > > > John
> > > > >>> > > > >
> > > > >>> > > > > On Wed, Sep 16, 2015 at 4:11 AM, Susana Cardoso
Pereira
> via
> > > RT
> > > > <
> > > > >>> > > > > met_help at ucar.edu> wrote:
> > > > >>> > > > >
> > > > >>> > > > > >
> > > > >>> > > > > > <URL:
> > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > > >>> >
> > > > >>> > > > > >
> > > > >>> > > > > > Hi Julie,
> > > > >>> > > > > >
> > > > >>> > > > > > I follow yours instructions: change de compiler
from
> icpc
> > > to
> > > > >>> icc
> > > > >>> > > > (export
> > > > >>> > > > > > CXX= icc) with gsl1.13 (btw I was using gsl1.16)
and
> I've
> > > > >>> still got
> > > > >>> > > the
> > > > >>> > > > > > same error. Two notes: I could only compile the
gsl lib
> > > with
> > > > >>> > > > CFLAGS="-O0"
> > > > >>> > > > > > so I tried to compile the met with the same
flags. The
> > > result
> > > > >>> > > remained
> > > > >>> > > > a
> > > > >>> > > > > > flop.
> > > > >>> > > > > >
> > > > >>> > > > > > So, it seems to me that the error might be,
either in
> the
> > > MET
> > > > >>> code
> > > > >>> > or
> > > > >>> > > > > > during the gsl's compile process with no
optmization).
> > > > >>> > > > > >
> > > > >>> > > > > > My programming skills are low so, at this point,
I
> would
> > be
> > > > >>> very
> > > > >>> > > > grateful
> > > > >>> > > > > > with your help before contacting the gsl's help
> services
> > > (you
> > > > >>> told
> > > > >>> > > me,
> > > > >>> > > > in
> > > > >>> > > > > > previous messages, that the gsl lib list of
files
> seemed
> > > ok -
> > > > >>> no
> > > > >>> > lib
> > > > >>> > > > > > missing).
> > > > >>> > > > > >
> > > > >>> > > > > > Wainting for your instructions,
> > > > >>> > > > > >
> > > > >>> > > > > > Susana
> > > > >>> > > > > >
> > > > >>> > > > > > On Tue, Sep 15, 2015 at 5:39 PM, Julie
Prestopnik via
> RT
> > <
> > > > >>> > > > > > met_help at ucar.edu>
> > > > >>> > > > > > wrote:
> > > > >>> > > > > >
> > > > >>> > > > > > > Hi Susana.
> > > > >>> > > > > > >
> > > > >>> > > > > > > Thank you for sending all of the attachments!
The
> > > library
> > > > >>> and
> > > > >>> > > > include
> > > > >>> > > > > > > files that you have for gsl look good. I don't
think
> > > there
> > > > >>> are
> > > > >>> > any
> > > > >>> > > > > > missing
> > > > >>> > > > > > > files.
> > > > >>> > > > > > >
> > > > >>> > > > > > > However, I see that you used "icc" to build
GSL, but
> > > "icpc"
> > > > >>> to
> > > > >>> > > build
> > > > >>> > > > > MET.
> > > > >>> > > > > > > Please try using "icc" to build MET as well.
> > > > >>> > > > > > >
> > > > >>> > > > > > > So please use:
> > > > >>> > > > > > >
> > > > >>> > > > > > > setenv CXX /path/to/icc
> > > > >>> > > > > > >
> > > > >>> > > > > > > or
> > > > >>> > > > > > >
> > > > >>> > > > > > > export CXX=/path/to/icc
> > > > >>> > > > > > >
> > > > >>> > > > > > > depending on which shell you're using,
replacing
> > > > >>> "/path/to/icc"
> > > > >>> > > with
> > > > >>> > > > > the
> > > > >>> > > > > > > full path to your icc compiler.
> > > > >>> > > > > > >
> > > > >>> > > > > > > Then run configure and make install again:
> > > > >>> > > > > > >
> > > > >>> > > > > > > ./configure
--prefix=/home/susana/software/met-5.0
> > > > >>> > > > > > > make install >& make_install.log &
> > > > >>> > > > > > >
> > > > >>> > > > > > > Please let me know if that helps solve the
problem.
> > > > >>> > > > > > >
> > > > >>> > > > > > > Thanks,
> > > > >>> > > > > > > Julie
> > > > >>> > > > > > >
> > > > >>> > > > > > > On Mon, Sep 14, 2015 at 4:07 AM, Susana
Cardoso
> Pereira
> > > via
> > > > >>> RT <
> > > > >>> > > > > > > met_help at ucar.edu> wrote:
> > > > >>> > > > > > >
> > > > >>> > > > > > > >
> > > > >>> > > > > > > > <URL:
> > > > >>> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > > >>> > >
> > > > >>> > > > > > > >
> > > > >>> > > > > > > > Hi Julie,
> > > > >>> > > > > > > >
> > > > >>> > > > > > > > Sorry, for the late response but I've been
out of
> the
> > > > >>> office.
> > > > >>> > > > Thanks
> > > > >>> > > > > > for
> > > > >>> > > > > > > > support you've been giving me. I really
appreciate
> > it.
> > > > >>> > > > > > > > I've successfully installed the gsl-1.16
package
> but
> > no
> > > > >>> luck
> > > > >>> > with
> > > > >>> > > > the
> > > > >>> > > > > > > > met-5. I still have the same error message
during
> the
> > > > make
> > > > >>> > > install
> > > > >>> > > > > > step.
> > > > >>> > > > > > > > Here's some notes on what I've done:
> > > > >>> > > > > > > >
> > > > >>> > > > > > > > 1 – gsl
> > > > >>> > > > > > > > I had some trouble running the tests but
solved it
> > > > >>> changing the
> > > > >>> > > > > CFLAGS
> > > > >>> > > > > > > > (./configure CFLAGS="-O0" –prefix=`pwd`). I
didn't
> > get
> > > > any
> > > > >>> > error
> > > > >>> > > > > > message
> > > > >>> > > > > > > > but can you check if there are missing some
files
> in
> > > the
> > > > >>> gsl
> > > > >>> > > > lib/inc
> > > > >>> > > > > > > > directory? I attatch the list of files in
those
> dirs.
> > > > >>> > > > > > > >
> > > > >>> > > > > > > > 2 – met-5
> > > > >>> > > > > > > > I fail to tell you that I've also download
the
> > > met-5.0's
> > > > >>> > patches.
> > > > >>> > > > > > > > I've got the same mistake, during the make
install
> > > step,
> > > > >>> when
> > > > >>> > > > trying
> > > > >>> > > > > to
> > > > >>> > > > > > > > compile with the gsl_wavelet (see attach)
> > > > >>> > > > > > > >
> > > > >>> > > > > > > > Can you help me?
> > > > >>> > > > > > > >
> > > > >>> > > > > > > > Thanks in advance.
> > > > >>> > > > > > > >
> > > > >>> > > > > > > > Susana
> > > > >>> > > > > > > >
> > > > >>> > > > > > > >
> > > > >>> > > > > > > > On Wed, Sep 9, 2015 at 6:02 PM, Julie
Prestopnik
> via
> > > RT <
> > > > >>> > > > > > > met_help at ucar.edu
> > > > >>> > > > > > > > >
> > > > >>> > > > > > > > wrote:
> > > > >>> > > > > > > >
> > > > >>> > > > > > > > > Hi Susana. I'm sorry that you are
encountering
> > > > >>> difficulties
> > > > >>> > > with
> > > > >>> > > > > > > > compiling
> > > > >>> > > > > > > > > GSL. In the link I sent to you
previously:
> > > > >>> > > > > > > > >
> > > > >>> > > > > > > > > http://www.gnu.org/software/gsl/
> > > > >>> > > > > > > > >
> > > > >>> > > > > > > > > I see there is an email address for help
and a
> > user's
> > > > >>> mailing
> > > > >>> > > > list:
> > > > >>> > > > > > > > >
> > > > >>> > > > > > > > > help-gsl at gnu.org
> > > > >>> > > > > > > > > http://mail.gnu.org/mailman/listinfo/help-
gsl
> > > > >>> > > > > > > > >
> > > > >>> > > > > > > > > I don't know what newer version you got,
but it
> > looks
> > > > >>> like we
> > > > >>> > > are
> > > > >>> > > > > > using
> > > > >>> > > > > > > > > gsl-1.13 here.
> > > > >>> > > > > > > > >
> > > > >>> > > > > > > > > Please let us know if we can help.
> > > > >>> > > > > > > > >
> > > > >>> > > > > > > > > Julie
> > > > >>> > > > > > > > >
> > > > >>> > > > > > > > > On Wed, Sep 9, 2015 at 2:06 AM, Susana
Cardoso
> > > Pereira
> > > > >>> via
> > > > >>> > RT <
> > > > >>> > > > > > > > > met_help at ucar.edu> wrote:
> > > > >>> > > > > > > > >
> > > > >>> > > > > > > > > >
> > > > >>> > > > > > > > > > <URL:
> > > > >>> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > > >>> > > > >
> > > > >>> > > > > > > > > >
> > > > >>> > > > > > > > > > Hi Julia,
> > > > >>> > > > > > > > > >
> > > > >>> > > > > > > > > > Thanks for the support. It was great. I
didn't
> > say
> > > > >>> anything
> > > > >>> > > > > because
> > > > >>> > > > > > > I'm
> > > > >>> > > > > > > > > > trying to compile the gsl but I'm
finding some
> > > > >>> > difficulties.
> > > > >>> > > > I'm
> > > > >>> > > > > > not
> > > > >>> > > > > > > > sure
> > > > >>> > > > > > > > > > if there is an error or only a bug in
running
> the
> > > > >>> tests.
> > > > >>> > > > > > > > > >
> > > > >>> > > > > > > > > >
> > > > >>> > > > > > > > > > Thanks
> > > > >>> > > > > > > > > > Susana
> > > > >>> > > > > > > > > >
> > > > >>> > > > > > > > > > On Tue, Sep 8, 2015 at 6:05 PM, Julie
> Prestopnik
> > > via
> > > > >>> RT <
> > > > >>> > > > > > > > > met_help at ucar.edu
> > > > >>> > > > > > > > > > >
> > > > >>> > > > > > > > > > wrote:
> > > > >>> > > > > > > > > >
> > > > >>> > > > > > > > > > > Hi Susana. I just wanted to follow
up. Were
> > you
> > > > >>> able to
> > > > >>> > > > > > compile a
> > > > >>> > > > > > > > > more
> > > > >>> > > > > > > > > > > recent version of GSL and then
successfully
> > > compile
> > > > >>> MET
> > > > >>> > > > > > afterward?
> > > > >>> > > > > > > > > > >
> > > > >>> > > > > > > > > > > Thanks,
> > > > >>> > > > > > > > > > > Julie
> > > > >>> > > > > > > > > > >
> > > > >>> > > > > > > > > > > On Wed, Sep 2, 2015 at 10:12 AM, Julie
> > > Prestopnik <
> > > > >>> > > > > > > jpresto at ucar.edu>
> > > > >>> > > > > > > > > > > wrote:
> > > > >>> > > > > > > > > > >
> > > > >>> > > > > > > > > > > > Hi Susana. I'm sorry that you're
having
> > > trouble
> > > > >>> > > compiling
> > > > >>> > > > > MET.
> > > > >>> > > > > > > > > Thank
> > > > >>> > > > > > > > > > > you
> > > > >>> > > > > > > > > > > > for attaching your config and
make_install
> > log
> > > > >>> files
> > > > >>> > and
> > > > >>> > > > for
> > > > >>> > > > > > > > checking
> > > > >>> > > > > > > > > > the
> > > > >>> > > > > > > > > > > > met_help archives.
> > > > >>> > > > > > > > > > > >
> > > > >>> > > > > > > > > > > > I see that you are using gsl-1.5.
> > > Unfortunately,
> > > > >>> that
> > > > >>> > > > older
> > > > >>> > > > > > > > version
> > > > >>> > > > > > > > > of
> > > > >>> > > > > > > > > > > > the GSL software does not come with
the
> > wavelet
> > > > >>> code
> > > > >>> > that
> > > > >>> > > > MET
> > > > >>> > > > > > > > needs.
> > > > >>> > > > > > > > > > > > Please download a more recent
version of
> GSL:
> > > > >>> > > > > > > > > > > >
> > > > >>> > > > > > > > > > > > http://www.gnu.org/software/gsl/
> > > > >>> > > > > > > > > > > >
> > > > >>> > > > > > > > > > > > and compile that using the
instructions
> here:
> > > > >>> > > > > > > > > > > >
> > > > >>> > > > > > > > > > > >
> > > > >>> > > > > > > > > > > >
> > > > >>> > > > > > > > > > >
> > > > >>> > > > > > > > > >
> > > > >>> > > > > > > > >
> > > > >>> > > > > > > >
> > > > >>> > > > > > >
> > > > >>> > > > > >
> > > > >>> > > > >
> > > > >>> > > >
> > > > >>> > >
> > > > >>> >
> > > > >>>
> > > >
> > >
> >
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv5.0/compilation/req_libs.php
> > > > >>> > > > > > > > > > > >
> > > > >>> > > > > > > > > > > > Then, reconfigure and recompile MET.
> Please
> > > let
> > > > us
> > > > >>> > know
> > > > >>> > > if
> > > > >>> > > > > you
> > > > >>> > > > > > > > > > encounter
> > > > >>> > > > > > > > > > > > any other issues or if that works
for you.
> > > > >>> > > > > > > > > > > >
> > > > >>> > > > > > > > > > > > Thanks,
> > > > >>> > > > > > > > > > > > Julie
> > > > >>> > > > > > > > > > > >
> > > > >>> > > > > > > > > > > >
> > > > >>> > > > > > > > > > > > On Wed, Sep 2, 2015 at 3:25 AM,
Susana
> > Cardoso
> > > > >>> Pereira
> > > > >>> > > via
> > > > >>> > > > > RT <
> > > > >>> > > > > > > > > > > > met_help at ucar.edu> wrote:
> > > > >>> > > > > > > > > > > >
> > > > >>> > > > > > > > > > > >>
> > > > >>> > > > > > > > > > > >> Wed Sep 02 03:25:39 2015: Request
73269
> was
> > > > acted
> > > > >>> > upon.
> > > > >>> > > > > > > > > > > >> Transaction: Ticket created by
> > > > >>> susana.cardoso at ua.pt
> > > > >>> > > > > > > > > > > >> Queue: met_help
> > > > >>> > > > > > > > > > > >> Subject: fail to compile
MET5.0
> > > > >>> > > > > > > > > > > >> Owner: Nobody
> > > > >>> > > > > > > > > > > >> Requestors: susana.cardoso at ua.pt
> > > > >>> > > > > > > > > > > >> Status: new
> > > > >>> > > > > > > > > > > >> Ticket <URL:
> > > > >>> > > > > > > > >
> > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=73269
> > > > >>> > > > > > > > > > >
> > > > >>> > > > > > > > > > > >>
> > > > >>> > > > > > > > > > > >>
> > > > >>> > > > > > > > > > > >> Hi,
> > > > >>> > > > > > > > > > > >> I've downloaded the MET 5 release
but I'm
> > > having
> > > > >>> > trouble
> > > > >>> > > > > > > compiling
> > > > >>> > > > > > > > > > it. I
> > > > >>> > > > > > > > > > > >> followed all of your instructions
but fail
> > to
> > > > see
> > > > >>> > where
> > > > >>> > > > the
> > > > >>> > > > > > > > error's
> > > > >>> > > > > > > > > > > origin
> > > > >>> > > > > > > > > > > >> might be.
> > > > >>> > > > > > > > > > > >> I attach the config and the
make_install
> log
> > > > >>> file. I
> > > > >>> > > also
> > > > >>> > > > > > > checked
> > > > >>> > > > > > > > > all
> > > > >>> > > > > > > > > > > the
> > > > >>> > > > > > > > > > > >> met_help archives in an attempt to
seek
> any
> > > help
> > > > >>> but
> > > > >>> > > with
> > > > >>> > > > no
> > > > >>> > > > > > > luck.
> > > > >>> > > > > > > > > > > >>
> > > > >>> > > > > > > > > > > >> Thanks in advance
> > > > >>> > > > > > > > > > > >>
> > > > >>> > > > > > > > > > > >> Susana
> > > > >>> > > > > > > > > > > >>
> > > > >>> > > > > > > > > > > >>
> > > > >>> > > > > > > > > > > >
> > > > >>> > > > > > > > > > > >
> > > > >>> > > > > > > > > > > > --
> > > > >>> > > > > > > > > > > > Julie Prestopnik
> > > > >>> > > > > > > > > > > > National Center for Atmospheric
Research
> > > > >>> > > > > > > > > > > > Research Applications Laboratory
> > > > >>> > > > > > > > > > > > Phone: 303.497.8399
> > > > >>> > > > > > > > > > > > Email: jpresto at ucar.edu
> > > > >>> > > > > > > > > > > >
> > > > >>> > > > > > > > > > >
> > > > >>> > > > > > > > > > >
> > > > >>> > > > > > > > > > >
> > > > >>> > > > > > > > > > > --
> > > > >>> > > > > > > > > > > Julie Prestopnik
> > > > >>> > > > > > > > > > > National Center for Atmospheric
Research
> > > > >>> > > > > > > > > > > Research Applications Laboratory
> > > > >>> > > > > > > > > > > Phone: 303.497.8399
> > > > >>> > > > > > > > > > > Email: jpresto at ucar.edu
> > > > >>> > > > > > > > > > >
> > > > >>> > > > > > > > > > >
> > > > >>> > > > > > > > > >
> > > > >>> > > > > > > > > >
> > > > >>> > > > > > > > >
> > > > >>> > > > > > > > >
> > > > >>> > > > > > > > > --
> > > > >>> > > > > > > > > Julie Prestopnik
> > > > >>> > > > > > > > > National Center for Atmospheric Research
> > > > >>> > > > > > > > > Research Applications Laboratory
> > > > >>> > > > > > > > > Phone: 303.497.8399
> > > > >>> > > > > > > > > Email: jpresto at ucar.edu
> > > > >>> > > > > > > > >
> > > > >>> > > > > > > > >
> > > > >>> > > > > > > >
> > > > >>> > > > > > > >
> > > > >>> > > > > > >
> > > > >>> > > > > > >
> > > > >>> > > > > > > --
> > > > >>> > > > > > > Julie Prestopnik
> > > > >>> > > > > > > National Center for Atmospheric Research
> > > > >>> > > > > > > Research Applications Laboratory
> > > > >>> > > > > > > Phone: 303.497.8399
> > > > >>> > > > > > > Email: jpresto at ucar.edu
> > > > >>> > > > > > >
> > > > >>> > > > > > >
> > > > >>> > > > > >
> > > > >>> > > > > >
> > > > >>> > > > >
> > > > >>> > > > >
> > > > >>> > > >
> > > > >>> > > >
> > > > >>> > >
> > > > >>> > >
> > > > >>> >
> > > > >>> >
> > > > >>>
> > > > >>>
> > > > >>
> > > > >
> > > >
> > > >
> > >
> > >
> > > --
> > > Julie Prestopnik
> > > National Center for Atmospheric Research
> > > Research Applications Laboratory
> > > Phone: 303.497.8399
> > > Email: jpresto at ucar.edu
> > >
> > >
> >
> >
>
>
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