[Met_help] [rt.rap.ucar.edu #41833] History for Met Build Problem (pb2nc build?)
RAL HelpDesk {for John Halley Gotway}
met_help at ucar.edu
Mon Nov 15 12:13:58 MST 2010
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Hello! I am a student at the University of Michigan working with my
professor (Frank Marsik) on a wrf project. We are hoping to use MET to
evaluate the results so I am attempting to install it on our computer, but I
have hit a few hiccups.
during the met build I come across the following error when the pb2nc
application attempts to build:
**** Making pb2nc application ***
>
> /usr/bin/g++ -o pb2nc pb2nc.cc pb2nc_Conf.o numpbmsg.o openpb.o readpb.o
> dumppb.o \
> -Wall -Wshadow -static -g -m32 -DMET_BASE=\"/home/wrf/METv3.0\" \
> -I../../lib -I/home/wrf/netcdf-3.6.0-p1/include -I/usr/local/include
> -I/home/wrf/bufrlib \
> -L../../lib -L/home/wrf/netcdf-3.6.0-p1/lib -L/usr/local/lib
> -L/home/wrf/bufrlib /usr/lib/gcc/x86_64-redhat-linux/3.4.6/libg2c.a \
> -lbufr -lvx_pb_util \
> -lvx_contable -lvx_met_util -lvx_analysis_util \
> -lvx_gdata -lvx_wrfdata -lvx_contable -lvx_met_util -lvx_grib_classes \
> -lvx_econfig -lvx_gsl_prob -lgsl \
> -lvx_plot_util -lvx_render -lvx_pxm -lvx_color -lvx_ps -lvx_afm \
> -lvx_data_grids -lvx_gnomon -lvx_nav -lvx_cal -lvx_util -lvx_math -lm \
> -lnetcdf_c++ -lnetcdf \
> -lg2c -lgfortran
> /home/wrf/netcdf-3.6.0-p1/include/netcdfcpp.h:175: warning: $-1��class
> NcTypedComponent��-A has virtual functions but non-virtual destructor
> /usr/bin/ld: skipping incompatible ../../lib/libvx_pb_util.a when searching
> for -lvx_pb_util
> /usr/bin/ld: cannot find -lvx_pb_util
> collect2: ld returned 1 exit status
> make[3]: *** [pb2nc] Error 1
> make[2]: *** [all] Error 2
> make[1]: *** [targets] Error 2
> make: *** [all] Error 2*
>
My make file for reference:
*# Path to GNU Make command*
> *MAKE = /usr/bin/make*
>
> *# Architecture flags*
> *ARCH_FLAGS = -DBLOCK4*
>
> *# Path to the C++ Compiler*
> *# C++ compiler flags*
> *# Any additional required libraries*
> *CXX = /usr/bin/g++*
> *CXX_FLAGS = -Wall -Wshadow -static -g -m32*
> *CXX_LIBS =*
>
> *# Path to the Fortran Compiler*
> *# Fortran compiler flags*
> *# Any additional required libraries*
> *FC = /usr/bin/g77*
> *FC_FLAGS = -Wall -Wshadow -static -ff2c -g -m32*
> *FC_LIBS = -lgfortran*
>
> *# Make print options*
> *PRINT_OPTS = --no-print-directory*
>
> *# Top level directory for the NetCDF library*
> *# NetCDF include directory specified as: -I/your/include/path*
> *# NetCDF library directory specified as: -L/your/library/path*
> *NETCDF_BASE = /home/wrf/netcdf-3.6.0-p1*
> *NETCDF_INCS = -I$(NETCDF_BASE)/include*
> *NETCDF_LIBS = -L$(NETCDF_BASE)/lib*
>
> *# Top level directory for BUFRLIB*
> *# BUFRLIB include directory specified as: -I/your/include/path*
> *# BUFRLIB library directory specified as: -L/your/library/path*
> *BUFR_BASE = /home/wrf/bufrlib*
> *BUFR_INCS = -I$(BUFR_BASE)*
> *BUFR_LIBS = -L$(BUFR_BASE)*
>
> *# Top level directory for the GNU Scientific Library (GSL) if it's not*
> *# installed in a standard location.*
> *# GSL include directory specified as: -I/your/include/path*
> *# GSL library directory specified as: -L/your/library/path*
> *GSL_BASE = /usr/local*
> *GSL_INCS = -I$(GSL_BASE)/include*
> *GSL_LIBS = -L$(GSL_BASE)/lib*
>
> *# Top level directory for the F2C or G2C Library if it's not installed in
> a*
> *# standard location.*
> *# F2C include directory specified as: -I/your/include/path*
> *# F2C library directory containing libf2c.a or libg2c.a and specified as:
> *
> *# -L/your/library/path*
> *# Name of the library to be used: -lf2c or -lg2c*
> *# NOTE: Only required for the GNU g77 Fortran compiler*
> *F2C_BASE =*
> *F2C_INCS =*
> *F2C_LIBS = /usr/lib/gcc/x86_64-redhat-linux/3.4.6/libg2c.a*
> *F2C_LIBNAME = -lg2c*
>
> *# Optional flags to disable the compilation of MET tools*
> *# Specify a non-zero value to disable the compilation of the tool*
> *DISABLE_PCP_COMBINE = 0*
> *DISABLE_GEN_POLY_MASK = 0*
> *DISABLE_MODE = 0*
> *DISABLE_GRID_STAT = 0*
> *DISABLE_PB2NC = 0*
> *DISABLE_ASCII2NC = 0*
> *DISABLE_POINT_STAT = 0*
> *DISABLE_WAVELET_STAT = 0*
> *DISABLE_ENSEMBLE_STAT = 0*
> *DISABLE_STAT_ANALYSIS = 0*
> *DISABLE_MODE_ANALYSIS = 0*
> *DISABLE_TOOLS = 1*
>
Thanks much,
--
Gavin D. Chensue
University of Michigan - College of Engineering
Dept. of Atmospheric Oceanic and Space Sciences
(734) 546-0725
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: Re: [rt.rap.ucar.edu #41833] Met Build Problem (pb2nc build?)
From: Paul Oldenburg
Time: Fri Oct 29 12:04:07 2010
Gavin,
We noticed that you are using the g77 fortran compiler. We strongly
recommend that you use gfortran instead, since we
have a lot more experience supporting that compiler. If you do have
gfortran on your system, you will also need to make
the following change to the F2C_LIBS in your Makefile:
F2C_LIBS = "-L/usr/lib/gcc/x86_64-redhat-linux/3.4.6"
This setting should point to the folder containing the included
library, not to the library itself. Also, it must be
prefixed with a -L for the linker to interpret it as a library folder.
If you do not have gfortran, and you must proceed using g77, you must
remove the following flags from the following
settings in your Makefile, since they will not work:
FC_FLAGS - remove -ff2c
FC_LIBS - remove -lgfortran
Also, if you are using g77, you may have to do some work to determine
the correct compiler flags and libraries. If you
have any questions, please let us know.
Thanks,
Paul
On 10/29/2010 10:57 AM, RAL HelpDesk {for Gavin Chensue} wrote:
>
> Fri Oct 29 10:57:23 2010: Request 41833 was acted upon.
> Transaction: Ticket created by gchensue at umich.edu
> Queue: met_help
> Subject: Met Build Problem (pb2nc build?)
> Owner: Nobody
> Requestors: gchensue at umich.edu
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=41833 >
>
>
> Hello! I am a student at the University of Michigan working with my
> professor (Frank Marsik) on a wrf project. We are hoping to use MET
to
> evaluate the results so I am attempting to install it on our
computer, but I
> have hit a few hiccups.
>
> during the met build I come across the following error when the
pb2nc
> application attempts to build:
>
> **** Making pb2nc application ***
>>
>> /usr/bin/g++ -o pb2nc pb2nc.cc pb2nc_Conf.o numpbmsg.o openpb.o
readpb.o
>> dumppb.o \
>> -Wall -Wshadow -static -g -m32
-DMET_BASE=\"/home/wrf/METv3.0\" \
>> -I../../lib -I/home/wrf/netcdf-3.6.0-p1/include
-I/usr/local/include
>> -I/home/wrf/bufrlib \
>> -L../../lib -L/home/wrf/netcdf-3.6.0-p1/lib -L/usr/local/lib
>> -L/home/wrf/bufrlib /usr/lib/gcc/x86_64-redhat-linux/3.4.6/libg2c.a
\
>> -lbufr -lvx_pb_util \
>> -lvx_contable -lvx_met_util -lvx_analysis_util \
>> -lvx_gdata -lvx_wrfdata -lvx_contable -lvx_met_util
-lvx_grib_classes \
>> -lvx_econfig -lvx_gsl_prob -lgsl \
>> -lvx_plot_util -lvx_render -lvx_pxm -lvx_color -lvx_ps
-lvx_afm \
>> -lvx_data_grids -lvx_gnomon -lvx_nav -lvx_cal -lvx_util
-lvx_math -lm \
>> -lnetcdf_c++ -lnetcdf \
>> -lg2c -lgfortran
>> /home/wrf/netcdf-3.6.0-p1/include/netcdfcpp.h:175: warning: $-
1��class
>> NcTypedComponent��-A has virtual functions but non-virtual
destructor
>> /usr/bin/ld: skipping incompatible ../../lib/libvx_pb_util.a when
searching
>> for -lvx_pb_util
>> /usr/bin/ld: cannot find -lvx_pb_util
>> collect2: ld returned 1 exit status
>> make[3]: *** [pb2nc] Error 1
>> make[2]: *** [all] Error 2
>> make[1]: *** [targets] Error 2
>> make: *** [all] Error 2*
>>
>
> My make file for reference:
>
> *# Path to GNU Make command*
>> *MAKE = /usr/bin/make*
>>
>> *# Architecture flags*
>> *ARCH_FLAGS = -DBLOCK4*
>>
>> *# Path to the C++ Compiler*
>> *# C++ compiler flags*
>> *# Any additional required libraries*
>> *CXX = /usr/bin/g++*
>> *CXX_FLAGS = -Wall -Wshadow -static -g -m32*
>> *CXX_LIBS =*
>>
>> *# Path to the Fortran Compiler*
>> *# Fortran compiler flags*
>> *# Any additional required libraries*
>> *FC = /usr/bin/g77*
>> *FC_FLAGS = -Wall -Wshadow -static -ff2c -g -m32*
>> *FC_LIBS = -lgfortran*
>>
>> *# Make print options*
>> *PRINT_OPTS = --no-print-directory*
>>
>> *# Top level directory for the NetCDF library*
>> *# NetCDF include directory specified as: -I/your/include/path*
>> *# NetCDF library directory specified as: -L/your/library/path*
>> *NETCDF_BASE = /home/wrf/netcdf-3.6.0-p1*
>> *NETCDF_INCS = -I$(NETCDF_BASE)/include*
>> *NETCDF_LIBS = -L$(NETCDF_BASE)/lib*
>>
>> *# Top level directory for BUFRLIB*
>> *# BUFRLIB include directory specified as: -I/your/include/path*
>> *# BUFRLIB library directory specified as: -L/your/library/path*
>> *BUFR_BASE = /home/wrf/bufrlib*
>> *BUFR_INCS = -I$(BUFR_BASE)*
>> *BUFR_LIBS = -L$(BUFR_BASE)*
>>
>> *# Top level directory for the GNU Scientific Library (GSL) if it's
not*
>> *# installed in a standard location.*
>> *# GSL include directory specified as: -I/your/include/path*
>> *# GSL library directory specified as: -L/your/library/path*
>> *GSL_BASE = /usr/local*
>> *GSL_INCS = -I$(GSL_BASE)/include*
>> *GSL_LIBS = -L$(GSL_BASE)/lib*
>>
>> *# Top level directory for the F2C or G2C Library if it's not
installed in
>> a*
>> *# standard location.*
>> *# F2C include directory specified as: -I/your/include/path*
>> *# F2C library directory containing libf2c.a or libg2c.a and
specified as:
>> *
>> *# -L/your/library/path*
>> *# Name of the library to be used: -lf2c or -lg2c*
>> *# NOTE: Only required for the GNU g77 Fortran compiler*
>> *F2C_BASE =*
>> *F2C_INCS =*
>> *F2C_LIBS = /usr/lib/gcc/x86_64-redhat-linux/3.4.6/libg2c.a*
>> *F2C_LIBNAME = -lg2c*
>>
>> *# Optional flags to disable the compilation of MET tools*
>> *# Specify a non-zero value to disable the compilation of the tool*
>> *DISABLE_PCP_COMBINE = 0*
>> *DISABLE_GEN_POLY_MASK = 0*
>> *DISABLE_MODE = 0*
>> *DISABLE_GRID_STAT = 0*
>> *DISABLE_PB2NC = 0*
>> *DISABLE_ASCII2NC = 0*
>> *DISABLE_POINT_STAT = 0*
>> *DISABLE_WAVELET_STAT = 0*
>> *DISABLE_ENSEMBLE_STAT = 0*
>> *DISABLE_STAT_ANALYSIS = 0*
>> *DISABLE_MODE_ANALYSIS = 0*
>> *DISABLE_TOOLS = 1*
>>
>
> Thanks much,
------------------------------------------------
Subject: Met Build Problem (pb2nc build?)
From: Gavin Chensue
Time: Mon Nov 15 08:49:47 2010
Hello Paul,
I actually do have another problem. After working out many issues with
my
system admin we ran across an error we could not fix. The error is the
make
error:
*/home/wrf/bufrlib/libbufr.a(ufbevn.o): In function `ufbevn_':
ufbevn.f:(.text+0xa6e): undefined reference to `nvnwin_'
collect2: ld returned 1 exit status
make[3]: *** [pb2nc] Error 1
make[2]: *** [all] Error 2
make[1]: *** [targets] Error 2
make: *** [all] Error 2*
I found there error in an e-mail archive via google which said it was
a
quick fix with an attached file. I was wondering if there is indeed
such a
quick fix file and how I could get it.
Thanks so much,
-Gavin Chensue
On Thu, Nov 11, 2010 at 4:19 PM, RAL HelpDesk {for Paul Oldenburg} <
met_help at ucar.edu> wrote:
> According to our records, your request has been resolved. If you
have any
> further questions or concerns, please respond to this message.
>
--
Gavin D. Chensue
University of Michigan - College of Engineering
Dept. of Atmospheric Oceanic and Space Sciences
(734) 546-0725
------------------------------------------------
Subject: Re: [rt.rap.ucar.edu #41833] Resolved: Met Build Problem (pb2nc build?)
From: John Halley Gotway
Time: Mon Nov 15 08:59:59 2010
Gavin,
There is a known issue when compiling BUFRLIB using the GNU compilers
- I assume you're using GNU. Please take a look on the known issue
page for MET at the entry titled "Bug in BUFRLIB for the GNU
gfortran compiler":
http://www.dtcenter.org/met/users/support/known_issues/METv3.0/index.php
Just download the updated version of the file "nvnwin.f", recompile
BUFRLIB, and then recompile MET.
For help compiling the required libraries for MET, you can refer to
our online tutorial:
http://www.dtcenter.org/met/users/support/online_tutorial/METv3.0/compilation/req_libs.php
Hope that helps.
John Halley Gotway
met_help at ucar.edu
On 11/15/2010 08:49 AM, RAL HelpDesk {for Gavin Chensue} wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=41833 >
>
> Hello Paul,
>
> I actually do have another problem. After working out many issues
with my
> system admin we ran across an error we could not fix. The error is
the make
> error:
>
> */home/wrf/bufrlib/libbufr.a(ufbevn.o): In function `ufbevn_':
> ufbevn.f:(.text+0xa6e): undefined reference to `nvnwin_'
> collect2: ld returned 1 exit status
> make[3]: *** [pb2nc] Error 1
> make[2]: *** [all] Error 2
> make[1]: *** [targets] Error 2
> make: *** [all] Error 2*
>
> I found there error in an e-mail archive via google which said it
was a
> quick fix with an attached file. I was wondering if there is indeed
such a
> quick fix file and how I could get it.
>
> Thanks so much,
> -Gavin Chensue
>
> On Thu, Nov 11, 2010 at 4:19 PM, RAL HelpDesk {for Paul Oldenburg} <
> met_help at ucar.edu> wrote:
>
>> According to our records, your request has been resolved. If you
have any
>> further questions or concerns, please respond to this message.
>>
>
>
>
------------------------------------------------
Subject: Met Build Problem (pb2nc build?)
From: Gavin Chensue
Time: Mon Nov 15 12:12:36 2010
Thanks a lot John, that fix got it working!
I feel kind of silly for not finding that issue myself.
Thanks again,
-Gavin Chensue
On Mon, Nov 15, 2010 at 11:00 AM, RAL HelpDesk {for John Halley
Gotway} <
met_help at ucar.edu> wrote:
> Gavin,
>
> There is a known issue when compiling BUFRLIB using the GNU
compilers - I
> assume you're using GNU. Please take a look on the known issue page
for MET
> at the entry titled "Bug in BUFRLIB for the GNU
> gfortran compiler":
>
http://www.dtcenter.org/met/users/support/known_issues/METv3.0/index.php
>
> Just download the updated version of the file "nvnwin.f", recompile
> BUFRLIB, and then recompile MET.
>
> For help compiling the required libraries for MET, you can refer to
our
> online tutorial:
>
>
http://www.dtcenter.org/met/users/support/online_tutorial/METv3.0/compilation/req_libs.php
>
> Hope that helps.
>
> John Halley Gotway
> met_help at ucar.edu
>
> On 11/15/2010 08:49 AM, RAL HelpDesk {for Gavin Chensue} wrote:
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=41833 >
> >
> > Hello Paul,
> >
> > I actually do have another problem. After working out many issues
with my
> > system admin we ran across an error we could not fix. The error is
the
> make
> > error:
> >
> > */home/wrf/bufrlib/libbufr.a(ufbevn.o): In function `ufbevn_':
> > ufbevn.f:(.text+0xa6e): undefined reference to `nvnwin_'
> > collect2: ld returned 1 exit status
> > make[3]: *** [pb2nc] Error 1
> > make[2]: *** [all] Error 2
> > make[1]: *** [targets] Error 2
> > make: *** [all] Error 2*
> >
> > I found there error in an e-mail archive via google which said it
was a
> > quick fix with an attached file. I was wondering if there is
indeed such
> a
> > quick fix file and how I could get it.
> >
> > Thanks so much,
> > -Gavin Chensue
> >
> > On Thu, Nov 11, 2010 at 4:19 PM, RAL HelpDesk {for Paul Oldenburg}
<
> > met_help at ucar.edu> wrote:
> >
> >> According to our records, your request has been resolved. If you
have
> any
> >> further questions or concerns, please respond to this message.
> >>
> >
> >
> >
>
>
--
Gavin D. Chensue
University of Michigan - College of Engineering
Dept. of Atmospheric Oceanic and Space Sciences
(734) 546-0725
------------------------------------------------
Subject: Re: [rt.rap.ucar.edu #41833] Resolved: Met Build Problem (pb2nc build?)
From: John Halley Gotway
Time: Mon Nov 15 12:13:45 2010
Gavin,
Great, glad that did the trick. If any more issues arise in your use
of MET, feel free to write us at met_help at ucar.edu.
Thanks,
John
On 11/15/2010 12:12 PM, RAL HelpDesk {for Gavin Chensue} wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=41833 >
>
> Thanks a lot John, that fix got it working!
>
> I feel kind of silly for not finding that issue myself.
>
> Thanks again,
>
> -Gavin Chensue
>
> On Mon, Nov 15, 2010 at 11:00 AM, RAL HelpDesk {for John Halley
Gotway} <
> met_help at ucar.edu> wrote:
>
>> Gavin,
>>
>> There is a known issue when compiling BUFRLIB using the GNU
compilers - I
>> assume you're using GNU. Please take a look on the known issue
page for MET
>> at the entry titled "Bug in BUFRLIB for the GNU
>> gfortran compiler":
>>
http://www.dtcenter.org/met/users/support/known_issues/METv3.0/index.php
>>
>> Just download the updated version of the file "nvnwin.f", recompile
>> BUFRLIB, and then recompile MET.
>>
>> For help compiling the required libraries for MET, you can refer to
our
>> online tutorial:
>>
>>
http://www.dtcenter.org/met/users/support/online_tutorial/METv3.0/compilation/req_libs.php
>>
>> Hope that helps.
>>
>> John Halley Gotway
>> met_help at ucar.edu
>>
>> On 11/15/2010 08:49 AM, RAL HelpDesk {for Gavin Chensue} wrote:
>>>
>>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=41833 >
>>>
>>> Hello Paul,
>>>
>>> I actually do have another problem. After working out many issues
with my
>>> system admin we ran across an error we could not fix. The error is
the
>> make
>>> error:
>>>
>>> */home/wrf/bufrlib/libbufr.a(ufbevn.o): In function `ufbevn_':
>>> ufbevn.f:(.text+0xa6e): undefined reference to `nvnwin_'
>>> collect2: ld returned 1 exit status
>>> make[3]: *** [pb2nc] Error 1
>>> make[2]: *** [all] Error 2
>>> make[1]: *** [targets] Error 2
>>> make: *** [all] Error 2*
>>>
>>> I found there error in an e-mail archive via google which said it
was a
>>> quick fix with an attached file. I was wondering if there is
indeed such
>> a
>>> quick fix file and how I could get it.
>>>
>>> Thanks so much,
>>> -Gavin Chensue
>>>
>>> On Thu, Nov 11, 2010 at 4:19 PM, RAL HelpDesk {for Paul Oldenburg}
<
>>> met_help at ucar.edu> wrote:
>>>
>>>> According to our records, your request has been resolved. If you
have
>> any
>>>> further questions or concerns, please respond to this message.
>>>>
>>>
>>>
>>>
>>
>>
>
>
------------------------------------------------
More information about the Met_help
mailing list