[ncl-talk] Sub: Killed
Adv
advita6 at gmail.com
Tue Mar 3 15:50:26 MST 2015
Hi,
I am trying to handle cluster of netcdf files with each file size of 1.5GB.
I also printed below the code i used. When i try to run my code, outputs
Killed.
Could someone help me to fix the bug.?
fils = systemfunc ("ls /home/use/downloadesgf/set1/ncl/pr/*.nc") ; file
paths
f = addfiles (fils, "r")
ListSetType (f, "cat")
cl= f[:]->cl ; read T from all files
printVarSummary (cl)
ncdump -c of my netcdf is
ncdump -c cl_Amon_EC-EARTH_decadal1960_r3i1p1_196101-197012.nc
netcdf cl_Amon_EC-EARTH_decadal1960_r3i1p1_196101-197012 {
dimensions:
time = UNLIMITED ; // (120 currently)
lev = 62 ;
lat = 160 ;
lon = 320 ;
bnds = 2 ;
variables:
double time(time) ;
time:bounds = "time_bnds" ;
time:units = "days since 1960-1-1" ;
time:calendar = "gregorian" ;
time:axis = "T" ;
time:long_name = "time" ;
time:standard_name = "time" ;
double time_bnds(time, bnds) ;
double lev(lev) ;
lev:bounds = "lev_bnds" ;
lev:units = "1" ;
lev:axis = "Z" ;
lev:positive = "down" ;
lev:long_name = "hybrid sigma pressure coordinate" ;
lev:standard_name = "atmosphere_hybrid_sigma_pressure_coordinate" ;
lev:formula = "p = a*p0 + b*ps" ;
lev:formula_terms = "p0: p0 a: a b: b ps: ps" ;
double lev_bnds(lev, bnds) ;
lev_bnds:formula = "p = a*p0 + b*ps" ;
lev_bnds:standard_name =
"atmosphere_hybrid_sigma_pressure_coordinate" ;
lev_bnds:units = "1" ;
lev_bnds:formula_terms = "p0: p0 a: a_bnds b: b_bnds ps: ps" ;
float p0 ;
p0:long_name = "vertical coordinate formula term: reference
pressure" ;
p0:units = "Pa" ;
double a(lev) ;
a:long_name = "vertical coordinate formula term: a(k)" ;
double b(lev) ;
b:long_name = "vertical coordinate formula term: b(k)" ;
float ps(time, lat, lon) ;
ps:standard_name = "surface_air_pressure" ;
ps:long_name = "Surface Air Pressure" ;
ps:comment = "not, in general, the same as mean sea-level pressure"
;
ps:units = "Pa" ;
ps:cell_methods = "time: mean" ;
ps:cell_measures = "area: areacella" ;
double a_bnds(lev, bnds) ;
a_bnds:long_name = "vertical coordinate formula term: a(k+1/2)" ;
double b_bnds(lev, bnds) ;
b_bnds:long_name = "vertical coordinate formula term: b(k+1/2)" ;
double lat(lat) ;
lat:bounds = "lat_bnds" ;
lat:units = "degrees_north" ;
lat:axis = "Y" ;
lat:long_name = "latitude" ;
lat:standard_name = "latitude" ;
double lat_bnds(lat, bnds) ;
double lon(lon) ;
lon:bounds = "lon_bnds" ;
lon:units = "degrees_east" ;
lon:axis = "X" ;
lon:long_name = "longitude" ;
lon:standard_name = "longitude" ;
double lon_bnds(lon, bnds) ;
float cl(time, lev, lat, lon) ;
cl:standard_name = "cloud_area_fraction_in_atmosphere_layer" ;
cl:long_name = "Cloud Area Fraction" ;
cl:comment = "Includes both large-scale and convective cloud." ;
cl:units = "%" ;
cl:original_name = "CC" ;
cl:cell_methods = "time: mean (interval: 6 hours)" ;
cl:cell_measures = "area: areacella" ;
cl:history = "2012-04-02T08:53:38Z altered by CMOR: replaced
missing value flag (1e+28) with standard missing value (1e+20).
2012-04-02T08:53:38Z altered by CMOR: Converted type from \'d\' to \'f\'.
2012-04-02T08:53:38Z altered by CMOR: Inverted axis: lev.
2012-04-02T08:53:38Z altered by CMOR: Inverted axis: lat." ;
cl:missing_value = 1.e+20f ;
cl:_FillValue = 1.e+20f ;
cl:associated_files = "baseURL:
http://cmip-pcmdi.llnl.gov/CMIP5/dataLocation gridspecFile:
gridspec_atmos_fx_EC-Earth_decadal1960_r0i0p0.nc areacella:
areacella_fx_EC-Earth_decadal1960_r0i0p0.nc" ;
// global attributes:
:institution = "EC-Earth (European Earth System Model)" ;
:institute_id = "ICHEC" ;
:experiment_id = "decadal1960" ;
:source = "EC-Earth 2.3 (2011); atmosphere: IFS
(cy31R1+modifications, T159L62); ocean: NEMO (version2+modifications,
ORCA1-42lev); sea ice: LIM2; land: HTessel" ;
:model_id = "EC-EARTH" ;
:forcing = "GHG, Oz, SA, Sl, Vl, (GHG = CO2, N2O, CH4, CFCs)" ;
:parent_experiment_id = "N/A" ;
:parent_experiment_rip = "N/A" ;
:branch_time = 0. ;
:contact = "Alastair McKinstry <alastair.mckinstry at ichec.ie>" ;
:history = "IC3 Decadal Experiment 2012-04-02T08:47:41Z CMOR
rewrote data to comply with CF standards and CMIP5 requirements." ;
:comment = "IC3 contact f.doblas-reyes at ic3.cat" ;
:references = "Du, H., F.J. Doblas-Reyes, J. Garcia-Serrano, V.
Guemas, Y. Soufflet, B. Wouters, 2012. Sensitivity of decadal predictions
to the initial atmospheric and oceanic perturbations. Climate Dynamics, in
press" ;
:initialization_method = 1 ;
:physics_version = 1 ;
:tracking_id = "27b8c0a8-25a8-4207-aef0-5c580252df3e" ;
:product = "output" ;
:experiment = "10- or 30-year run initialized in year 1960" ;
:frequency = "mon" ;
:creation_date = "2012-04-02T08:53:38Z" ;
:Conventions = "CF-1.4" ;
:project_id = "CMIP5" ;
:table_id = "Table Amon (26 July 2011)
b26379e76858ab98b927917878a63d01" ;
:title = "EC-Earth model output prepared for CMIP5 10- or 30-year
run initialized in year 1960" ;
:parent_experiment = "N/A" ;
:modeling_realm = "atmos" ;
:realization = 3 ;
:cmor_version = "2.8.0" ;
data:
time = 381.5, 411, 440.5, 471, 501.5, 532, 562.5, 593.5, 624, 654.5, 685,
715.5, 746.5, 776, 805.5, 836, 866.5, 897, 927.5, 958.5, 989, 1019.5,
1050, 1080.5, 1111.5, 1141, 1170.5, 1201, 1231.5, 1262, 1292.5, 1323.5,
1354, 1384.5, 1415, 1445.5, 1476.5, 1506.5, 1536.5, 1567, 1597.5, 1628,
1658.5, 1689.5, 1720, 1750.5, 1781, 1811.5, 1842.5, 1872, 1901.5, 1932,
1962.5, 1993, 2023.5, 2054.5, 2085, 2115.5, 2146, 2176.5, 2207.5, 2237,
2266.5, 2297, 2327.5, 2358, 2388.5, 2419.5, 2450, 2480.5, 2511, 2541.5,
2572.5, 2602, 2631.5, 2662, 2692.5, 2723, 2753.5, 2784.5, 2815, 2845.5,
2876, 2906.5, 2937.5, 2967.5, 2997.5, 3028, 3058.5, 3089, 3119.5,
3150.5,
3181, 3211.5, 3242, 3272.5, 3303.5, 3333, 3362.5, 3393, 3423.5, 3454,
3484.5, 3515.5, 3546, 3576.5, 3607, 3637.5, 3668.5, 3698, 3727.5, 3758,
3788.5, 3819, 3849.5, 3880.5, 3911, 3941.5, 3972, 4002.5 ;
lev = 0.998814937344117, 0.995949133192705, 0.991977550709468,
0.986761005882505, 0.98031097707606, 0.972738617371053,
0.963896752354567, 0.953529666328856, 0.941606471269923,
0.92813291389402, 0.913110538468371, 0.896545012353933,
0.878475201530559, 0.858976029448204, 0.838120207706876,
0.815972842517533, 0.7926217749721, 0.768187587358379,
0.742788084545164,
0.716525528571299, 0.689516580275552, 0.661905753898445,
0.63383208242183, 0.605413205707871, 0.576774847794481,
0.548064217305543, 0.519501453051902, 0.491366554478158,
0.463933650692722, 0.437458895338325, 0.41218007358813,
0.388198451687388, 0.36547741407194, 0.343964864673422,
0.323604011499092, 0.304340414099066, 0.286121358005341,
0.268896466407701, 0.252617382048276, 0.237237738281987,
0.222713168620164, 0.209001182237978, 0.19606110463038,
0.183854030567662, 0.172342708649639, 0.161491573394506,
0.151266613407328, 0.14142902940564, 0.131674244431666,
0.121919806943467, 0.112165666514245, 0.102411788016295,
0.0926581119445705, 0.0829045477863824, 0.0731510471469045,
0.0633975753094143, 0.0536441023448784, 0.0438906173627338,
0.0341371295830871, 0.0243836516742719, 0.01463017363562,
0.00487671730798125 ;
lat = -89.14152, -88.02943, -86.91077, -85.79063, -84.66992, -83.54895,
-82.42782, -81.30659, -80.18531, -79.06398, -77.94262, -76.82124,
-75.69984, -74.57843, -73.45701, -72.33558, -71.21414, -70.09269,
-68.97124, -67.84978, -66.72833, -65.60686, -64.4854, -63.36393,
-62.24246, -61.12099, -59.99952, -58.87804, -57.75657, -56.63509,
-55.51361, -54.39214, -53.27066, -52.14917, -51.02769, -49.90621,
-48.78473, -47.66325, -46.54176, -45.42028, -44.29879, -43.17731,
-42.05582, -40.93434, -39.81285, -38.69137, -37.56988, -36.44839,
-35.32691, -34.20542, -33.08393, -31.96244, -30.84096, -29.71947,
-28.59798, -27.47649, -26.355, -25.23351, -24.11203, -22.99054,
-21.86905, -20.74756, -19.62607, -18.50458, -17.38309, -16.2616,
-15.14011, -14.01862, -12.89713, -11.77564, -10.65415, -9.53266,
-8.41117, -7.28968, -6.16819, -5.0467, -3.92521, -2.80372, -1.68223,
-0.56074, 0.56074, 1.68223, 2.80372, 3.92521, 5.0467, 6.16819, 7.28968,
8.41117, 9.53266, 10.65415, 11.77564, 12.89713, 14.01862, 15.14011,
16.2616, 17.38309, 18.50458, 19.62607, 20.74756, 21.86905, 22.99054,
24.11203, 25.23351, 26.355, 27.47649, 28.59798, 29.71947, 30.84096,
31.96244, 33.08393, 34.20542, 35.32691, 36.44839, 37.56988, 38.69137,
39.81285, 40.93434, 42.05582, 43.17731, 44.29879, 45.42028, 46.54176,
47.66325, 48.78473, 49.90621, 51.02769, 52.14917, 53.27066, 54.39214,
55.51361, 56.63509, 57.75657, 58.87804, 59.99952, 61.12099, 62.24246,
63.36393, 64.4854, 65.60686, 66.72833, 67.84978, 68.97124, 70.09269,
71.21414, 72.33558, 73.45701, 74.57843, 75.69984, 76.82124, 77.94262,
79.06398, 80.18531, 81.30659, 82.42782, 83.54895, 84.66992, 85.79063,
86.91077, 88.02943, 89.14152 ;
lon = 0, 1.125, 2.25, 3.375, 4.5, 5.625, 6.75, 7.875, 9, 10.125, 11.25,
12.375, 13.5, 14.625, 15.75, 16.875, 18, 19.125, 20.25, 21.375, 22.5,
23.625, 24.75, 25.875, 27, 28.125, 29.25, 30.375, 31.5, 32.625, 33.75,
34.875, 36, 37.125, 38.25, 39.375, 40.5, 41.625, 42.75, 43.875, 45,
46.125, 47.25, 48.375, 49.5, 50.625, 51.75, 52.875, 54, 55.125, 56.25,
57.375, 58.5, 59.625, 60.75, 61.875, 63, 64.125, 65.25, 66.375, 67.5,
68.625, 69.75, 70.875, 72, 73.125, 74.25, 75.375, 76.5, 77.625, 78.75,
79.875, 81, 82.125, 83.25, 84.375, 85.5, 86.625, 87.75, 88.875, 90,
91.125, 92.25, 93.375, 94.5, 95.625, 96.75, 97.875, 99, 100.125,
101.25,
102.375, 103.5, 104.625, 105.75, 106.875, 108, 109.125, 110.25,
111.375,
112.5, 113.625, 114.75, 115.875, 117, 118.125, 119.25, 120.375, 121.5,
122.625, 123.75, 124.875, 126, 127.125, 128.25, 129.375, 130.5,
131.625,
132.75, 133.875, 135, 136.125, 137.25, 138.375, 139.5, 140.625, 141.75,
142.875, 144, 145.125, 146.25, 147.375, 148.5, 149.625, 150.75,
151.875,
153, 154.125, 155.25, 156.375, 157.5, 158.625, 159.75, 160.875, 162,
163.125, 164.25, 165.375, 166.5, 167.625, 168.75, 169.875, 171,
172.125,
173.25, 174.375, 175.5, 176.625, 177.75, 178.875, 180, 181.125, 182.25,
183.375, 184.5, 185.625, 186.75, 187.875, 189, 190.125, 191.25,
192.375,
193.5, 194.625, 195.75, 196.875, 198, 199.125, 200.25, 201.375, 202.5,
203.625, 204.75, 205.875, 207, 208.125, 209.25, 210.375, 211.5,
212.625,
213.75, 214.875, 216, 217.125, 218.25, 219.375, 220.5, 221.625, 222.75,
223.875, 225, 226.125, 227.25, 228.375, 229.5, 230.625, 231.75,
232.875,
234, 235.125, 236.25, 237.375, 238.5, 239.625, 240.75, 241.875, 243,
244.125, 245.25, 246.375, 247.5, 248.625, 249.75, 250.875, 252,
253.125,
254.25, 255.375, 256.5, 257.625, 258.75, 259.875, 261, 262.125, 263.25,
264.375, 265.5, 266.625, 267.75, 268.875, 270, 271.125, 272.25,
273.375,
274.5, 275.625, 276.75, 277.875, 279, 280.125, 281.25, 282.375, 283.5,
284.625, 285.75, 286.875, 288, 289.125, 290.25, 291.375, 292.5,
293.625,
294.75, 295.875, 297, 298.125, 299.25, 300.375, 301.5, 302.625, 303.75,
304.875, 306, 307.125, 308.25, 309.375, 310.5, 311.625, 312.75,
313.875,
315, 316.125, 317.25, 318.375, 319.5, 320.625, 321.75, 322.875, 324,
325.125, 326.25, 327.375, 328.5, 329.625, 330.75, 331.875, 333,
334.125,
335.25, 336.375, 337.5, 338.625, 339.75, 340.875, 342, 343.125, 344.25,
345.375, 346.5, 347.625, 348.75, 349.875, 351, 352.125, 353.25,
354.375,
355.5, 356.625, 357.75, 358.875 ;
}
Thanks
Adv
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