<div dir="ltr"><div><div>Hi,<br></div>I am trying to handle cluster of netcdf files with each file size of 1.5GB. I also printed below the code i used. When i try to run my code, outputs Killed. <br></div><div>Could someone help me to fix the bug.?<br></div><br><br><div><br>fils = systemfunc (&quot;ls /home/use/downloadesgf/set1/ncl/pr/*.nc&quot;) ; file paths<br>f    = addfiles (fils, &quot;r&quot;)<br>ListSetType (f, &quot;cat&quot;)<br>cl= f[:]-&gt;cl                ; read T from all files<br>printVarSummary (cl)<br><br><br></div><div>ncdump -c of my netcdf is <br> ncdump -c cl_Amon_EC-EARTH_decadal1960_r3i1p1_196101-197012.nc<br>netcdf cl_Amon_EC-EARTH_decadal1960_r3i1p1_196101-197012 {<br>dimensions:<br>    time = UNLIMITED ; // (120 currently)<br>    lev = 62 ;<br>    lat = 160 ;<br>    lon = 320 ;<br>    bnds = 2 ;<br>variables:<br>    double time(time) ;<br>        time:bounds = &quot;time_bnds&quot; ;<br>        time:units = &quot;days since 1960-1-1&quot; ;<br>        time:calendar = &quot;gregorian&quot; ;<br>        time:axis = &quot;T&quot; ;<br>        time:long_name = &quot;time&quot; ;<br>        time:standard_name = &quot;time&quot; ;<br>    double time_bnds(time, bnds) ;<br>    double lev(lev) ;<br>        lev:bounds = &quot;lev_bnds&quot; ;<br>        lev:units = &quot;1&quot; ;<br>        lev:axis = &quot;Z&quot; ;<br>        lev:positive = &quot;down&quot; ;<br>        lev:long_name = &quot;hybrid sigma pressure coordinate&quot; ;<br>        lev:standard_name = &quot;atmosphere_hybrid_sigma_pressure_coordinate&quot; ;<br>        lev:formula = &quot;p = a*p0 + b*ps&quot; ;<br>        lev:formula_terms = &quot;p0: p0 a: a b: b ps: ps&quot; ;<br>    double lev_bnds(lev, bnds) ;<br>        lev_bnds:formula = &quot;p = a*p0 + b*ps&quot; ;<br>        lev_bnds:standard_name = &quot;atmosphere_hybrid_sigma_pressure_coordinate&quot; ;<br>        lev_bnds:units = &quot;1&quot; ;<br>        lev_bnds:formula_terms = &quot;p0: p0 a: a_bnds b: b_bnds ps: ps&quot; ;<br>    float p0 ;<br>        p0:long_name = &quot;vertical coordinate formula term: reference pressure&quot; ;<br>        p0:units = &quot;Pa&quot; ;<br>    double a(lev) ;<br>        a:long_name = &quot;vertical coordinate formula term: a(k)&quot; ;<br>    double b(lev) ;<br>        b:long_name = &quot;vertical coordinate formula term: b(k)&quot; ;<br>    float ps(time, lat, lon) ;<br>        ps:standard_name = &quot;surface_air_pressure&quot; ;<br>        ps:long_name = &quot;Surface Air Pressure&quot; ;<br>        ps:comment = &quot;not, in general, the same as mean sea-level pressure&quot; ;<br>        ps:units = &quot;Pa&quot; ;<br>        ps:cell_methods = &quot;time: mean&quot; ;<br>        ps:cell_measures = &quot;area: areacella&quot; ;<br>    double a_bnds(lev, bnds) ;<br>        a_bnds:long_name = &quot;vertical coordinate formula term: a(k+1/2)&quot; ;<br>    double b_bnds(lev, bnds) ;<br>        b_bnds:long_name = &quot;vertical coordinate formula term: b(k+1/2)&quot; ;<br>    double lat(lat) ;<br>        lat:bounds = &quot;lat_bnds&quot; ;<br>        lat:units = &quot;degrees_north&quot; ;<br>        lat:axis = &quot;Y&quot; ;<br>        lat:long_name = &quot;latitude&quot; ;<br>        lat:standard_name = &quot;latitude&quot; ;<br>    double lat_bnds(lat, bnds) ;<br>    double lon(lon) ;<br>        lon:bounds = &quot;lon_bnds&quot; ;<br>        lon:units = &quot;degrees_east&quot; ;<br>        lon:axis = &quot;X&quot; ;<br>        lon:long_name = &quot;longitude&quot; ;<br>        lon:standard_name = &quot;longitude&quot; ;<br>    double lon_bnds(lon, bnds) ;<br>    float cl(time, lev, lat, lon) ;<br>        cl:standard_name = &quot;cloud_area_fraction_in_atmosphere_layer&quot; ;<br>        cl:long_name = &quot;Cloud Area Fraction&quot; ;<br>        cl:comment = &quot;Includes both large-scale and convective cloud.&quot; ;<br>        cl:units = &quot;%&quot; ;<br>        cl:original_name = &quot;CC&quot; ;<br>        cl:cell_methods = &quot;time: mean (interval: 6 hours)&quot; ;<br>        cl:cell_measures = &quot;area: areacella&quot; ;<br>        cl:history = &quot;2012-04-02T08:53:38Z altered by CMOR: replaced missing value flag (1e+28) with standard missing value (1e+20). 2012-04-02T08:53:38Z altered by CMOR: Converted type from \&#39;d\&#39; to \&#39;f\&#39;. 2012-04-02T08:53:38Z altered by CMOR: Inverted axis: lev. 2012-04-02T08:53:38Z altered by CMOR: Inverted axis: lat.&quot; ;<br>        cl:missing_value = 1.e+20f ;<br>        cl:_FillValue = 1.e+20f ;<br>        cl:associated_files = &quot;baseURL: <a href="http://cmip-pcmdi.llnl.gov/CMIP5/dataLocation">http://cmip-pcmdi.llnl.gov/CMIP5/dataLocation</a> gridspecFile: gridspec_atmos_fx_EC-Earth_decadal1960_r0i0p0.nc areacella: areacella_fx_EC-Earth_decadal1960_r0i0p0.nc&quot; ;<br><br>// global attributes:<br>        :institution = &quot;EC-Earth (European Earth System Model)&quot; ;<br>        :institute_id = &quot;ICHEC&quot; ;<br>        :experiment_id = &quot;decadal1960&quot; ;<br>        :source = &quot;EC-Earth 2.3 (2011); atmosphere: IFS (cy31R1+modifications, T159L62); ocean: NEMO (version2+modifications, ORCA1-42lev); sea ice: LIM2; land: HTessel&quot; ;<br>        :model_id = &quot;EC-EARTH&quot; ;<br>        :forcing = &quot;GHG, Oz, SA, Sl, Vl, (GHG = CO2, N2O, CH4, CFCs)&quot; ;<br>        :parent_experiment_id = &quot;N/A&quot; ;<br>        :parent_experiment_rip = &quot;N/A&quot; ;<br>        :branch_time = 0. ;<br>        :contact = &quot;Alastair McKinstry &lt;<a href="mailto:alastair.mckinstry@ichec.ie">alastair.mckinstry@ichec.ie</a>&gt;&quot; ;<br>        :history = &quot;IC3 Decadal Experiment 2012-04-02T08:47:41Z CMOR rewrote data to comply with CF standards and CMIP5 requirements.&quot; ;<br>        :comment = &quot;IC3 contact <a href="mailto:f.doblas-reyes@ic3.cat">f.doblas-reyes@ic3.cat</a>&quot; ;<br>        :references = &quot;Du, H., F.J. Doblas-Reyes, J. Garcia-Serrano, V. Guemas, Y. Soufflet, B. Wouters, 2012. Sensitivity of decadal predictions to the initial atmospheric and oceanic perturbations. Climate Dynamics, in press&quot; ;<br>        :initialization_method = 1 ;<br>        :physics_version = 1 ;<br>        :tracking_id = &quot;27b8c0a8-25a8-4207-aef0-5c580252df3e&quot; ;<br>        :product = &quot;output&quot; ;<br>        :experiment = &quot;10- or 30-year run initialized in year 1960&quot; ;<br>        :frequency = &quot;mon&quot; ;<br>        :creation_date = &quot;2012-04-02T08:53:38Z&quot; ;<br>        :Conventions = &quot;CF-1.4&quot; ;<br>        :project_id = &quot;CMIP5&quot; ;<br>        :table_id = &quot;Table Amon (26 July 2011) b26379e76858ab98b927917878a63d01&quot; ;<br>        :title = &quot;EC-Earth model output prepared for CMIP5 10- or 30-year run initialized in year 1960&quot; ;<br>        :parent_experiment = &quot;N/A&quot; ;<br>        :modeling_realm = &quot;atmos&quot; ;<br>        :realization = 3 ;<br>        :cmor_version = &quot;2.8.0&quot; ;<br>data:<br><br> time = 381.5, 411, 440.5, 471, 501.5, 532, 562.5, 593.5, 624, 654.5, 685, <br>    715.5, 746.5, 776, 805.5, 836, 866.5, 897, 927.5, 958.5, 989, 1019.5, <br>    1050, 1080.5, 1111.5, 1141, 1170.5, 1201, 1231.5, 1262, 1292.5, 1323.5, <br>    1354, 1384.5, 1415, 1445.5, 1476.5, 1506.5, 1536.5, 1567, 1597.5, 1628, <br>    1658.5, 1689.5, 1720, 1750.5, 1781, 1811.5, 1842.5, 1872, 1901.5, 1932, <br>    1962.5, 1993, 2023.5, 2054.5, 2085, 2115.5, 2146, 2176.5, 2207.5, 2237, <br>    2266.5, 2297, 2327.5, 2358, 2388.5, 2419.5, 2450, 2480.5, 2511, 2541.5, <br>    2572.5, 2602, 2631.5, 2662, 2692.5, 2723, 2753.5, 2784.5, 2815, 2845.5, <br>    2876, 2906.5, 2937.5, 2967.5, 2997.5, 3028, 3058.5, 3089, 3119.5, 3150.5, <br>    3181, 3211.5, 3242, 3272.5, 3303.5, 3333, 3362.5, 3393, 3423.5, 3454, <br>    3484.5, 3515.5, 3546, 3576.5, 3607, 3637.5, 3668.5, 3698, 3727.5, 3758, <br>    3788.5, 3819, 3849.5, 3880.5, 3911, 3941.5, 3972, 4002.5 ;<br><br> lev = 0.998814937344117, 0.995949133192705, 0.991977550709468, <br>    0.986761005882505, 0.98031097707606, 0.972738617371053, <br>    0.963896752354567, 0.953529666328856, 0.941606471269923, <br>    0.92813291389402, 0.913110538468371, 0.896545012353933, <br>    0.878475201530559, 0.858976029448204, 0.838120207706876, <br>    0.815972842517533, 0.7926217749721, 0.768187587358379, 0.742788084545164, <br>    0.716525528571299, 0.689516580275552, 0.661905753898445, <br>    0.63383208242183, 0.605413205707871, 0.576774847794481, <br>    0.548064217305543, 0.519501453051902, 0.491366554478158, <br>    0.463933650692722, 0.437458895338325, 0.41218007358813, <br>    0.388198451687388, 0.36547741407194, 0.343964864673422, <br>    0.323604011499092, 0.304340414099066, 0.286121358005341, <br>    0.268896466407701, 0.252617382048276, 0.237237738281987, <br>    0.222713168620164, 0.209001182237978, 0.19606110463038, <br>    0.183854030567662, 0.172342708649639, 0.161491573394506, <br>    0.151266613407328, 0.14142902940564, 0.131674244431666, <br>    0.121919806943467, 0.112165666514245, 0.102411788016295, <br>    0.0926581119445705, 0.0829045477863824, 0.0731510471469045, <br>    0.0633975753094143, 0.0536441023448784, 0.0438906173627338, <br>    0.0341371295830871, 0.0243836516742719, 0.01463017363562, <br>    0.00487671730798125 ;<br><br> lat = -89.14152, -88.02943, -86.91077, -85.79063, -84.66992, -83.54895, <br>    -82.42782, -81.30659, -80.18531, -79.06398, -77.94262, -76.82124, <br>    -75.69984, -74.57843, -73.45701, -72.33558, -71.21414, -70.09269, <br>    -68.97124, -67.84978, -66.72833, -65.60686, -64.4854, -63.36393, <br>    -62.24246, -61.12099, -59.99952, -58.87804, -57.75657, -56.63509, <br>    -55.51361, -54.39214, -53.27066, -52.14917, -51.02769, -49.90621, <br>    -48.78473, -47.66325, -46.54176, -45.42028, -44.29879, -43.17731, <br>    -42.05582, -40.93434, -39.81285, -38.69137, -37.56988, -36.44839, <br>    -35.32691, -34.20542, -33.08393, -31.96244, -30.84096, -29.71947, <br>    -28.59798, -27.47649, -26.355, -25.23351, -24.11203, -22.99054, <br>    -21.86905, -20.74756, -19.62607, -18.50458, -17.38309, -16.2616, <br>    -15.14011, -14.01862, -12.89713, -11.77564, -10.65415, -9.53266, <br>    -8.41117, -7.28968, -6.16819, -5.0467, -3.92521, -2.80372, -1.68223, <br>    -0.56074, 0.56074, 1.68223, 2.80372, 3.92521, 5.0467, 6.16819, 7.28968, <br>    8.41117, 9.53266, 10.65415, 11.77564, 12.89713, 14.01862, 15.14011, <br>    16.2616, 17.38309, 18.50458, 19.62607, 20.74756, 21.86905, 22.99054, <br>    24.11203, 25.23351, 26.355, 27.47649, 28.59798, 29.71947, 30.84096, <br>    31.96244, 33.08393, 34.20542, 35.32691, 36.44839, 37.56988, 38.69137, <br>    39.81285, 40.93434, 42.05582, 43.17731, 44.29879, 45.42028, 46.54176, <br>    47.66325, 48.78473, 49.90621, 51.02769, 52.14917, 53.27066, 54.39214, <br>    55.51361, 56.63509, 57.75657, 58.87804, 59.99952, 61.12099, 62.24246, <br>    63.36393, 64.4854, 65.60686, 66.72833, 67.84978, 68.97124, 70.09269, <br>    71.21414, 72.33558, 73.45701, 74.57843, 75.69984, 76.82124, 77.94262, <br>    79.06398, 80.18531, 81.30659, 82.42782, 83.54895, 84.66992, 85.79063, <br>    86.91077, 88.02943, 89.14152 ;<br><br> lon = 0, 1.125, 2.25, 3.375, 4.5, 5.625, 6.75, 7.875, 9, 10.125, 11.25, <br>    12.375, 13.5, 14.625, 15.75, 16.875, 18, 19.125, 20.25, 21.375, 22.5, <br>    23.625, 24.75, 25.875, 27, 28.125, 29.25, 30.375, 31.5, 32.625, 33.75, <br>    34.875, 36, 37.125, 38.25, 39.375, 40.5, 41.625, 42.75, 43.875, 45, <br>    46.125, 47.25, 48.375, 49.5, 50.625, 51.75, 52.875, 54, 55.125, 56.25, <br>    57.375, 58.5, 59.625, 60.75, 61.875, 63, 64.125, 65.25, 66.375, 67.5, <br>    68.625, 69.75, 70.875, 72, 73.125, 74.25, 75.375, 76.5, 77.625, 78.75, <br>    79.875, 81, 82.125, 83.25, 84.375, 85.5, 86.625, 87.75, 88.875, 90, <br>    91.125, 92.25, 93.375, 94.5, 95.625, 96.75, 97.875, 99, 100.125, 101.25, <br>    102.375, 103.5, 104.625, 105.75, 106.875, 108, 109.125, 110.25, 111.375, <br>    112.5, 113.625, 114.75, 115.875, 117, 118.125, 119.25, 120.375, 121.5, <br>    122.625, 123.75, 124.875, 126, 127.125, 128.25, 129.375, 130.5, 131.625, <br>    132.75, 133.875, 135, 136.125, 137.25, 138.375, 139.5, 140.625, 141.75, <br>    142.875, 144, 145.125, 146.25, 147.375, 148.5, 149.625, 150.75, 151.875, <br>    153, 154.125, 155.25, 156.375, 157.5, 158.625, 159.75, 160.875, 162, <br>    163.125, 164.25, 165.375, 166.5, 167.625, 168.75, 169.875, 171, 172.125, <br>    173.25, 174.375, 175.5, 176.625, 177.75, 178.875, 180, 181.125, 182.25, <br>    183.375, 184.5, 185.625, 186.75, 187.875, 189, 190.125, 191.25, 192.375, <br>    193.5, 194.625, 195.75, 196.875, 198, 199.125, 200.25, 201.375, 202.5, <br>    203.625, 204.75, 205.875, 207, 208.125, 209.25, 210.375, 211.5, 212.625, <br>    213.75, 214.875, 216, 217.125, 218.25, 219.375, 220.5, 221.625, 222.75, <br>    223.875, 225, 226.125, 227.25, 228.375, 229.5, 230.625, 231.75, 232.875, <br>    234, 235.125, 236.25, 237.375, 238.5, 239.625, 240.75, 241.875, 243, <br>    244.125, 245.25, 246.375, 247.5, 248.625, 249.75, 250.875, 252, 253.125, <br>    254.25, 255.375, 256.5, 257.625, 258.75, 259.875, 261, 262.125, 263.25, <br>    264.375, 265.5, 266.625, 267.75, 268.875, 270, 271.125, 272.25, 273.375, <br>    274.5, 275.625, 276.75, 277.875, 279, 280.125, 281.25, 282.375, 283.5, <br>    284.625, 285.75, 286.875, 288, 289.125, 290.25, 291.375, 292.5, 293.625, <br>    294.75, 295.875, 297, 298.125, 299.25, 300.375, 301.5, 302.625, 303.75, <br>    304.875, 306, 307.125, 308.25, 309.375, 310.5, 311.625, 312.75, 313.875, <br>    315, 316.125, 317.25, 318.375, 319.5, 320.625, 321.75, 322.875, 324, <br>    325.125, 326.25, 327.375, 328.5, 329.625, 330.75, 331.875, 333, 334.125, <br>    335.25, 336.375, 337.5, 338.625, 339.75, 340.875, 342, 343.125, 344.25, <br>    345.375, 346.5, 347.625, 348.75, 349.875, 351, 352.125, 353.25, 354.375, <br>    355.5, 356.625, 357.75, 358.875 ;<br>}<br></div><div>Thanks<br></div><div>Adv<br></div><div><br><br><br><br><br></div></div>