[Go-essp-tech] trackback still not working at PCMDI
Nathan Wilhelmi
wilhelmi at ucar.edu
Wed Nov 9 07:10:16 MST 2011
Hi Stephen,
I believe this should be worked around in the 1.3.4 release, if we are
looking at the same model its working for us.
Thanks!
-Nate
On 11/9/2011 3:37 AM, stephen.pascoe at stfc.ac.uk wrote:
> It appears trackback is still crashing when '%' is in certain parts of the CIM document. This time it's happening when entering trackback rather than during harvesting.
>
> This is on Gateway 1.3.2. I'm not sure whether it's fixed in 1.3.4. Maybe NCAR can comment, otherwise I will investigate further after the Gateway upgrade.
>
>
> Caused by: org.openrdf.query.parser.serql.ast.TokenMgrError: Lexical error at line 1, column 59. Encountered: "%" (37), after : ""
> at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilderTokenManager.getNextToken(SyntaxTreeBuilderTokenManager.java:2178)
> at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.jj_ntk(SyntaxTreeBuilder.java:3201)
> at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.Node(SyntaxTreeBuilder.java:1303)
> at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.BasicPathExpr(SyntaxTreeBuilder.java:1040)
> at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.PathExpr(SyntaxTreeBuilder.java:1017)
> at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.UnionPathExpr(SyntaxTreeBuilder.java:982)
> at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.PathExprList(SyntaxTreeBuilder.java:942)
> at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.From(SyntaxTreeBuilder.java:773)
> at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.QueryBody(SyntaxTreeBuilder.java:718)
> at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.SelectQuery(SyntaxTreeBuilder.java:387)
> at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.TupleQuery(SyntaxTreeBuilder.java:352)
> at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.TupleQuerySet(SyntaxTreeBuilder.java:148)
> at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.Query(SyntaxTreeBuilder.java:131)
> at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.QueryContainer(SyntaxTreeBuilder.java:42)
> at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.parseQuery(SyntaxTreeBuilder.java:23)
> at org.openrdf.query.parser.serql.SeRQLParser.parseQuery(SeRQLParser.java:34)
> ... 86 more
>
> ---
> Stephen Pascoe +44 (0)1235 445980
> Centre of Environmental Data Archival
> STFC Rutherford Appleton Laboratory, Harwell Oxford, Didcot OX11 0QX, UK
>
>
> -----Original Message-----
> From: go-essp-tech-bounces at ucar.edu [mailto:go-essp-tech-bounces at ucar.edu] On Behalf Of stephen.pascoe at stfc.ac.uk
> Sent: 09 November 2011 10:25
> To: bryan.lawrence at ncas.ac.uk; go-essp-tech at ucar.edu
> Cc: Cecelia.DeLuca at noaa.gov
> Subject: Re: [Go-essp-tech] trackback still not working at PCMDI
>
> Bryan,
>
> I am planning to upgrade to the latest Gateway 1.x release on Monday next week. I can't recall the details but I think it fixes several issues with CIM harvesting. However, the ECHAM server error is new. I will look at the logs now to see what was the exception.
>
> Cheers,
> Stephen.
>
> ---
> Stephen Pascoe +44 (0)1235 445980
> Centre of Environmental Data Archival
> STFC Rutherford Appleton Laboratory, Harwell Oxford, Didcot OX11 0QX, UK
>
>
> -----Original Message-----
> From: go-essp-tech-bounces at ucar.edu [mailto:go-essp-tech-bounces at ucar.edu] On Behalf Of Bryan Lawrence
> Sent: 09 November 2011 10:10
> To: go-essp-tech at ucar.edu
> Cc: Cecelia DeLuca
> Subject: Re: [Go-essp-tech] trackback still not working at PCMDI
>
> hi Dean et al
>
> It looks like this now works at PCMDI?
>
> However, at both PCMDI and BADC, I get internal errors from ECHAM simulation descriptions. Do we know what that's about?
>
> Thanks in advance,
> Bryan
>
>> Dear Cecelia,
>>
>> Bob is looking into updating the postgres database...but this is very
>> sensitive work. Under careful consideration, we are afraid that if we
>> update the database, then it may break a number of other things and the
>> entire system may fail. I am told that Bob had to do some special things
>> on our end in order to upgrade to the latest gateway.
>>
>> Let's discuss this at the next go-essp tech call. WE realize that your
>> team has put a lot of effort into this and we want to make sure it is used
>> by the community.
>>
>> Best regards,
>> Dean
>>
>> On 10/27/11 8:23 AM, "Cecelia DeLuca"<Cecelia.DeLuca at noaa.gov> wrote:
>>
>>> Hi Dean and all,
>>>
>>> Just checking - any update on this? I have been away for a while and it
>>> looks like it
>>> is still not working at pcmdi. It's been almost two months now. This
>>> represents a huge
>>> amount of effort and it would be a shame to not offer it to users
>>> because of the lack of a
>>> software update. Is there a new holdup, or anything our team can do to
>>> help move
>>> this along?
>>>
>>> Thanks,
>>> Cecelia
>>>
>>> On 10/11/2011 8:16 AM, Cecelia DeLuca wrote:
>>>> Thanks Dean.
>>>> - Cecelia
>>>>
>>>> On 10/7/2011 3:04 PM, Williams, Dean N. wrote:
>>>>> Dear Cecelia,
>>>>>
>>>>> We apologize for not being able to update the postgres database
>>>>> this week. We are on a deadline to get a number of things done for the
>>>>> CMIP5 archive. Not to say that the trackback isn't high on our list. We
>>>>> have got to start moving data to the core repositories sites and
>>>>> replicating. As stated in an earlier message, the team has accomplished
>>>>> the first task to move and replicate data. Mike is currently working to
>>>>> continue the replication effort.
>>>>>
>>>>> I am hopeful that Bob will be able to look into the postgres upgrade
>>>>> next week. This should allow the trackback...but we want to make sure
>>>>> this upgrade doesn't cause something else to break. We need to be
>>>>> careful here.
>>>>>
>>>>> Again, sorry for the delay...
>>>>>
>>>>> Best regards,
>>>>> Dean
>>>>> ________________________________________
>>>>> From: go-essp-tech-bounces at ucar.edu [go-essp-tech-bounces at ucar.edu] On
>>>>> Behalf Of Cecelia DeLuca [Cecelia.DeLuca at noaa.gov]
>>>>> Sent: Friday, October 07, 2011 8:39 AM
>>>>> To: go-essp-tech at ucar.edu
>>>>> Subject: Re: [Go-essp-tech] trackback still not working at PCMDI
>>>>>
>>>>> Dear all,
>>>>>
>>>>> Please be aware that the trackback is still not working at PCMDI.
>>>>> I think on the call on Tues we were expecting resolution of the issue
>>>>> by
>>>>> today.
>>>>> Can someone please help fix this?
>>>>>
>>>>> Thanks,
>>>>> -- Cecelia
>>>>>
>>>>> On 10/3/2011 8:31 AM, Williams, Dean N. wrote:
>>>>>> Dear Cecelia,
>>>>>>
>>>>>> We have upgraded to the latest version of the gateway 1.3.2
>>>>>> and I believe
>>>>>> Bob has the latest version Postgres for the latest release of the
>>>>>> gateway.
>>>>>>
>>>>>> Let's put this on the agenda for tomorrow's telco. Do you and
>>>>>> Sylvia
>>>>>> still want to have a portion of the telco time to demo CoG?
>>>>>>
>>>>>> Best regards,
>>>>>> Dean
>>>>>>
>>>>>> On 10/3/11 7:16 AM, "Cecelia DeLuca"<Cecelia.DeLuca at noaa.gov>
>>>>>> wrote:
>>>>>>
>>>>>>> Hi everyone,
>>>>>>>
>>>>>>> Sylvia reported early in September that the trackback was not working
>>>>>>> in the PCMDI gateway. It is still not working at all for the CMIP5
>>>>>>> runs.
>>>>>>> It is frustrating to not have this available after so much effort
>>>>>>> went
>>>>>>> into it. It is also making it impossible to report out success on
>>>>>>> milestones
>>>>>>> that we have for getting this running in the production site by the
>>>>>>> end
>>>>>>> of the FY.
>>>>>>>
>>>>>>> Eric has reported that the problem lies with PCMDI not upgrading to
>>>>>>> Postgres
>>>>>>> database version 8.4. Does everyone agree this is all that is
>>>>>>> needed and
>>>>>>> if so is there a timelines for doing this?
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Cecelia
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> ===================================================================
>>>>>>> Cecelia DeLuca
>>>>>>> NESII/CIRES/NOAA Earth System Research Laboratory
>>>>>>> 325 Broadway, Boulder 80305-337
>>>>>>> Email: cecelia.deluca at noaa.gov
>>>>>>> Phone: 303-497-3604
>>>>>>>
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> GO-ESSP-TECH mailing list
>>>>>>> GO-ESSP-TECH at ucar.edu
>>>>>>> http://mailman.ucar.edu/mailman/listinfo/go-essp-tech
>>>>> --
>>>>> ===================================================================
>>>>> Cecelia DeLuca
>>>>> NESII/CIRES/NOAA Earth System Research Laboratory
>>>>> 325 Broadway, Boulder 80305-337
>>>>> Email: cecelia.deluca at noaa.gov
>>>>> Phone: 303-497-3604
>>>>>
>>>>> _______________________________________________
>>>>> GO-ESSP-TECH mailing list
>>>>> GO-ESSP-TECH at ucar.edu
>>>>> http://mailman.ucar.edu/mailman/listinfo/go-essp-tech
>>>>
>>>
>>>
>>
>> _______________________________________________
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>> GO-ESSP-TECH at ucar.edu
>> http://mailman.ucar.edu/mailman/listinfo/go-essp-tech
>>
>
> --
> Bryan Lawrence
> University of Reading: Professor of Weather and Climate Computing.
> National Centre for Atmospheric Science: Director of Models and Data.
> STFC: Director of the Centre for Environmental Data Archival.
> Ph: +44 118 3786507 or 1235 445012; Web:home.badc.rl.ac.uk/lawrence
> _______________________________________________
> GO-ESSP-TECH mailing list
> GO-ESSP-TECH at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/go-essp-tech
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