[Go-essp-tech] trackback still not working at PCMDI
stephen.pascoe at stfc.ac.uk
stephen.pascoe at stfc.ac.uk
Wed Nov 9 03:37:07 MST 2011
It appears trackback is still crashing when '%' is in certain parts of the CIM document. This time it's happening when entering trackback rather than during harvesting.
This is on Gateway 1.3.2. I'm not sure whether it's fixed in 1.3.4. Maybe NCAR can comment, otherwise I will investigate further after the Gateway upgrade.
Caused by: org.openrdf.query.parser.serql.ast.TokenMgrError: Lexical error at line 1, column 59. Encountered: "%" (37), after : ""
at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilderTokenManager.getNextToken(SyntaxTreeBuilderTokenManager.java:2178)
at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.jj_ntk(SyntaxTreeBuilder.java:3201)
at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.Node(SyntaxTreeBuilder.java:1303)
at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.BasicPathExpr(SyntaxTreeBuilder.java:1040)
at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.PathExpr(SyntaxTreeBuilder.java:1017)
at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.UnionPathExpr(SyntaxTreeBuilder.java:982)
at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.PathExprList(SyntaxTreeBuilder.java:942)
at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.From(SyntaxTreeBuilder.java:773)
at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.QueryBody(SyntaxTreeBuilder.java:718)
at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.SelectQuery(SyntaxTreeBuilder.java:387)
at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.TupleQuery(SyntaxTreeBuilder.java:352)
at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.TupleQuerySet(SyntaxTreeBuilder.java:148)
at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.Query(SyntaxTreeBuilder.java:131)
at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.QueryContainer(SyntaxTreeBuilder.java:42)
at org.openrdf.query.parser.serql.ast.SyntaxTreeBuilder.parseQuery(SyntaxTreeBuilder.java:23)
at org.openrdf.query.parser.serql.SeRQLParser.parseQuery(SeRQLParser.java:34)
... 86 more
---
Stephen Pascoe +44 (0)1235 445980
Centre of Environmental Data Archival
STFC Rutherford Appleton Laboratory, Harwell Oxford, Didcot OX11 0QX, UK
-----Original Message-----
From: go-essp-tech-bounces at ucar.edu [mailto:go-essp-tech-bounces at ucar.edu] On Behalf Of stephen.pascoe at stfc.ac.uk
Sent: 09 November 2011 10:25
To: bryan.lawrence at ncas.ac.uk; go-essp-tech at ucar.edu
Cc: Cecelia.DeLuca at noaa.gov
Subject: Re: [Go-essp-tech] trackback still not working at PCMDI
Bryan,
I am planning to upgrade to the latest Gateway 1.x release on Monday next week. I can't recall the details but I think it fixes several issues with CIM harvesting. However, the ECHAM server error is new. I will look at the logs now to see what was the exception.
Cheers,
Stephen.
---
Stephen Pascoe +44 (0)1235 445980
Centre of Environmental Data Archival
STFC Rutherford Appleton Laboratory, Harwell Oxford, Didcot OX11 0QX, UK
-----Original Message-----
From: go-essp-tech-bounces at ucar.edu [mailto:go-essp-tech-bounces at ucar.edu] On Behalf Of Bryan Lawrence
Sent: 09 November 2011 10:10
To: go-essp-tech at ucar.edu
Cc: Cecelia DeLuca
Subject: Re: [Go-essp-tech] trackback still not working at PCMDI
hi Dean et al
It looks like this now works at PCMDI?
However, at both PCMDI and BADC, I get internal errors from ECHAM simulation descriptions. Do we know what that's about?
Thanks in advance,
Bryan
> Dear Cecelia,
>
> Bob is looking into updating the postgres database...but this is very
> sensitive work. Under careful consideration, we are afraid that if we
> update the database, then it may break a number of other things and the
> entire system may fail. I am told that Bob had to do some special things
> on our end in order to upgrade to the latest gateway.
>
> Let's discuss this at the next go-essp tech call. WE realize that your
> team has put a lot of effort into this and we want to make sure it is used
> by the community.
>
> Best regards,
> Dean
>
> On 10/27/11 8:23 AM, "Cecelia DeLuca" <Cecelia.DeLuca at noaa.gov> wrote:
>
> >Hi Dean and all,
> >
> >Just checking - any update on this? I have been away for a while and it
> >looks like it
> >is still not working at pcmdi. It's been almost two months now. This
> >represents a huge
> >amount of effort and it would be a shame to not offer it to users
> >because of the lack of a
> >software update. Is there a new holdup, or anything our team can do to
> >help move
> >this along?
> >
> >Thanks,
> >Cecelia
> >
> >On 10/11/2011 8:16 AM, Cecelia DeLuca wrote:
> >> Thanks Dean.
> >> - Cecelia
> >>
> >> On 10/7/2011 3:04 PM, Williams, Dean N. wrote:
> >>> Dear Cecelia,
> >>>
> >>> We apologize for not being able to update the postgres database
> >>>this week. We are on a deadline to get a number of things done for the
> >>>CMIP5 archive. Not to say that the trackback isn't high on our list. We
> >>>have got to start moving data to the core repositories sites and
> >>>replicating. As stated in an earlier message, the team has accomplished
> >>>the first task to move and replicate data. Mike is currently working to
> >>>continue the replication effort.
> >>>
> >>> I am hopeful that Bob will be able to look into the postgres upgrade
> >>>next week. This should allow the trackback...but we want to make sure
> >>>this upgrade doesn't cause something else to break. We need to be
> >>>careful here.
> >>>
> >>> Again, sorry for the delay...
> >>>
> >>> Best regards,
> >>> Dean
> >>> ________________________________________
> >>> From: go-essp-tech-bounces at ucar.edu [go-essp-tech-bounces at ucar.edu] On
> >>>Behalf Of Cecelia DeLuca [Cecelia.DeLuca at noaa.gov]
> >>> Sent: Friday, October 07, 2011 8:39 AM
> >>> To: go-essp-tech at ucar.edu
> >>> Subject: Re: [Go-essp-tech] trackback still not working at PCMDI
> >>>
> >>> Dear all,
> >>>
> >>> Please be aware that the trackback is still not working at PCMDI.
> >>> I think on the call on Tues we were expecting resolution of the issue
> >>>by
> >>> today.
> >>> Can someone please help fix this?
> >>>
> >>> Thanks,
> >>> -- Cecelia
> >>>
> >>> On 10/3/2011 8:31 AM, Williams, Dean N. wrote:
> >>>> Dear Cecelia,
> >>>>
> >>>> We have upgraded to the latest version of the gateway 1.3.2
> >>>>and I believe
> >>>> Bob has the latest version Postgres for the latest release of the
> >>>>gateway.
> >>>>
> >>>> Let's put this on the agenda for tomorrow's telco. Do you and
> >>>>Sylvia
> >>>> still want to have a portion of the telco time to demo CoG?
> >>>>
> >>>> Best regards,
> >>>> Dean
> >>>>
> >>>> On 10/3/11 7:16 AM, "Cecelia DeLuca"<Cecelia.DeLuca at noaa.gov>
> >>>>wrote:
> >>>>
> >>>>> Hi everyone,
> >>>>>
> >>>>> Sylvia reported early in September that the trackback was not working
> >>>>> in the PCMDI gateway. It is still not working at all for the CMIP5
> >>>>>runs.
> >>>>> It is frustrating to not have this available after so much effort
> >>>>>went
> >>>>> into it. It is also making it impossible to report out success on
> >>>>> milestones
> >>>>> that we have for getting this running in the production site by the
> >>>>>end
> >>>>> of the FY.
> >>>>>
> >>>>> Eric has reported that the problem lies with PCMDI not upgrading to
> >>>>> Postgres
> >>>>> database version 8.4. Does everyone agree this is all that is
> >>>>>needed and
> >>>>> if so is there a timelines for doing this?
> >>>>>
> >>>>> Thanks,
> >>>>> Cecelia
> >>>>>
> >>>>>
> >>>>>
> >>>>> --
> >>>>> ===================================================================
> >>>>> Cecelia DeLuca
> >>>>> NESII/CIRES/NOAA Earth System Research Laboratory
> >>>>> 325 Broadway, Boulder 80305-337
> >>>>> Email: cecelia.deluca at noaa.gov
> >>>>> Phone: 303-497-3604
> >>>>>
> >>>>>
> >>>>> _______________________________________________
> >>>>> GO-ESSP-TECH mailing list
> >>>>> GO-ESSP-TECH at ucar.edu
> >>>>> http://mailman.ucar.edu/mailman/listinfo/go-essp-tech
> >>> --
> >>> ===================================================================
> >>> Cecelia DeLuca
> >>> NESII/CIRES/NOAA Earth System Research Laboratory
> >>> 325 Broadway, Boulder 80305-337
> >>> Email: cecelia.deluca at noaa.gov
> >>> Phone: 303-497-3604
> >>>
> >>> _______________________________________________
> >>> GO-ESSP-TECH mailing list
> >>> GO-ESSP-TECH at ucar.edu
> >>> http://mailman.ucar.edu/mailman/listinfo/go-essp-tech
> >>
> >
> >
>
> _______________________________________________
> GO-ESSP-TECH mailing list
> GO-ESSP-TECH at ucar.edu
> http://mailman.ucar.edu/mailman/listinfo/go-essp-tech
>
--
Bryan Lawrence
University of Reading: Professor of Weather and Climate Computing.
National Centre for Atmospheric Science: Director of Models and Data.
STFC: Director of the Centre for Environmental Data Archival.
Ph: +44 118 3786507 or 1235 445012; Web:home.badc.rl.ac.uk/lawrence
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