[Wrf-users] undefined reference errors while compiling WRF v 3.2.1

Thu Dec 9 18:52:15 MST 2010

attaching compile.log file for version 3.1.1 as well (this worked fine with
the same settings ..)

On Thu, Dec 9, 2010 at 8:45 PM, Kunal Rao <kunalgrao at gmail.com> wrote:

> I am getting the following errors while compiling WRF V 3.2.1 with gcc and
> gfortran compiler .
>
> -----------------------------
>
> module_soil_pre.f90: In function ‘process_percent_cat_new’:
> module_soil_pre.f90:539: internal compiler error: in gfc_typenode_for_spec,
> at fortran/trans-types.c:652
>
> ------------------------------
>
> mpif90 -f90=gfortran -o wrf.exe  -O3 -ftree-vectorize -ftree-loop-linear
> -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian
> -frecord-marker=4    wrf.o ../main/module_wrf_top.o libwrflib.a
> /root/Kunal/WRFV3.2/external/fftpack/fftpack5/libfftpack.a
> /root/Kunal/WRFV3.2/external/io_grib1/libio_grib1.a
> /root/Kunal/WRFV3.2/external/io_grib_share/libio_grib_share.a
> /root/Kunal/WRFV3.2/external/io_int/libwrfio_int.a
> /root/Kunal/WRFV3.2/external/esmf_time_f90/libesmf_time.a
> /root/Kunal/WRFV3.2/external/RSL_LITE/librsl_lite.a
> /root/Kunal/WRFV3.2/frame/module_internal_header_util.o
> /root/Kunal/WRFV3.2/frame/pack_utils.o
>  /root/Kunal/WRFV3.2/external/io_pnetcdf/libwrfio_pnf.a
> -L/root/Kunal/pnetcdf/lib -lpnetcdf
> ../main/module_wrf_top.o: In function `__module_wrf_top__wrf_finalize':
> module_wrf_top.f90:(.text+0x961): undefined reference to `med_shutdown_io_'
> ../main/module_wrf_top.o: In function `__module_wrf_top__wrf_init':
> module_wrf_top.f90:(.text+0xa74): undefined reference to `init_modules_'
> module_wrf_top.f90:(.text+0xa87): undefined reference to `init_modules_'
> module_wrf_top.f90:(.text+0xad5): undefined reference to
> `__module_check_a_mundo__check_nml_consistency'
> module_wrf_top.f90:(.text+0xada): undefined reference to
> `__module_check_a_mundo__set_physics_rconfigs'
> '
> '
> '
> -------------------------------
>
> These errors do not come with version 3.1.1 and comes with version 3.2.1. I
> am compiling the test case em_b_wave.
> Attaching the compile.log file for your reference.
>
> Kindly let me know if you have any suggestions to resolve this.
>
> Thanks & Regards,
> Kunal
>
> On Wed, Dec 8, 2010 at 10:44 PM, Kunal Rao <kunalgrao at gmail.com> wrote:
>
>> I had done " $ ./compile em_b_wave |tee compile.log " . Now, cleaned again
>> and this time did "$ ./compile em_b_wave >& compile.log".
>> Now, it has recorded the undefined reference errors in the log file.
>> Attaching the same. Kindly go through that and let me know
>> if you have any suggestions to resolve it.
>>
>> Thanks & Regards,
>> Kunal
>>
>>
>>
>>
>> On Wed, Dec 8, 2010 at 10:08 PM, wrfhelp <wrfhelp at ucar.edu> wrote:
>>
>>> I cannot find any compile errors in your file. Did you do 'compile
>>> em_b_wave >& (with &) compile.out'?
>>> If you are working in c-shell environment, you may need to type
>>> compile em_b_wave > compile.out 2>&1
>>> to catch errors.
>>>
>>> wrfhelp
>>>
>>>
>>> On Dec 8, 2010, at 11:27 AM, Kunal Rao wrote:
>>>
>>>  Hello
>>>>
>>>> Thanks for your reply.
>>>>
>>>> As per your suggestion, I did 'clean -a' and then configured and
>>>> compiled again. I do not see any hints in the log file to figure out what
>>>> might be going wrong/missing. I have set the env. variable PNETCDF to the
>>>> path where I have parallel netcdf and also changed "io_form_*" in
>>>> namelist.input in /test/em_b_wave folder from 2 to 11 for parallel netcdf.
>>>> Everything is compiled with gcc and gfortran compiler.
>>>>
>>>> Kindly find attached the configure.wrf file and the compile.log file for
>>>> your reference. Kindly let me know if you have any suggestions.
>>>>
>>>> Thanks & Regards,
>>>> Kunal
>>>>
>>>>
>>>> Kindly find attached the configure.wrf file and compile.log file.
>>>>
>>>> On Tue, Dec 7, 2010 at 9:57 PM, wrfhelp <wrfhelp at ucar.edu> wrote:
>>>> Can you try  to first do 'clean -a', and repeat the compile procedure?
>>>> When you compile,
>>>> please save the compile output to a file (e..g compile em_b_wave >&
>>>> compile.out), and see if
>>>> there is other information in the output file that may give you hint on
>>>> the compile problem. If
>>>> you cannot figure it out, please send the entire compile.out file over.
>>>>
>>>> wrfhelp
>>>>
>>>>
>>>> On Dec 7, 2010, at 5:43 PM, Kunal Rao wrote:
>>>>
>>>> Hello
>>>>
>>>> I am trying to compile WRF V 3.2.1 with parallel netCDF v1.2.0 and using
>>>> gcc and gfortran compiler.
>>>>
>>>> My configure step is done, but when I compile ( tried with $ ./compile
>>>> em_b_wave ) I get the following and many such
>>>> undefined reference errors.
>>>>
>>>> -----------------
>>>> gfortran -o ideal.exe  -O3 -ftree-vectorize -ftree-loop-linear
>>>> -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian
>>>> -frecord-marker=4    ideal.o ../dyn_em/module_initialize_b_wave.o
>>>> libwrflib.a /root/Kunal/WRFV3/external/fftpack/fftpack5/libfftpack.a
>>>> /root/Kunal/WRFV3/external/io_grib1/libio_grib1.a
>>>> /root/Kunal/WRFV3/external/io_grib_share/libio_grib_share.a
>>>> /root/Kunal/WRFV3/external/io_int/libwrfio_int.a
>>>> /root/Kunal/WRFV3/external/esmf_time_f90/libesmf_time.a
>>>> /root/Kunal/WRFV3/frame/module_internal_header_util.o
>>>> /root/Kunal/WRFV3/frame/pack_utils.o
>>>> ideal.o: In function `med_initialdata_output_':
>>>>
>>>> ideal.f90:(.text+0x6e): undefined reference to
>>>> `__module_date_time__calc_current_date'
>>>> ideal.f90:(.text+0x97): undefined reference to `construct_filename1_'
>>>> ideal.f90:(.text+0xd9): undefined reference to
>>>> `__module_io_domain__output_input'
>>>> ideal.f90:(.text+0xe9): undefined reference to
>>>> `__module_io_domain__open_w_dataset'
>>>>
>>>> ----------------
>>>>
>>>> I don't have netCDF installed on my system, only parallel NetCDF is
>>>> installed. I have set the PNETCDF env. variable with the path to Parallel
>>>> NetCDF. That should be sufficient, right ?
>>>>
>>>> Any tips on what is missing / going wrong here. How do I resolve this
>>>> undefined reference errors ?
>>>>
>>>> Thanks & Regards,
>>>> Kunal
>>>>
>>>> wrfhelp
>>>> http://www.mmm.ucar.edu/wrf/users/supports/wrfhelp.html
>>>>
>>>>
>>>>
>>>>
>>>> <configure.wrf><compile.log>
>>>>
>>>
>>> wrfhelp
>>> http://www.mmm.ucar.edu/wrf/users/supports/wrfhelp.html
>>>
>>>
>>>
>>>
>>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://mailman.ucar.edu/pipermail/wrf-users/attachments/20101209/792a1e82/attachment-0001.html 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: compile_3.1.log
Type: application/octet-stream
Size: 398411 bytes
Desc: not available
Url : http://mailman.ucar.edu/pipermail/wrf-users/attachments/20101209/792a1e82/attachment-0001.obj 