[Wrf-users] undefined reference errors while compiling WRF v 3.2.1
Kunal Rao
kunalgrao at gmail.com
Thu Dec 9 18:45:24 MST 2010
I am getting the following errors while compiling WRF V 3.2.1 with gcc and
gfortran compiler .
-----------------------------
module_soil_pre.f90: In function ‘process_percent_cat_new’:
module_soil_pre.f90:539: internal compiler error: in gfc_typenode_for_spec,
at fortran/trans-types.c:652
------------------------------
mpif90 -f90=gfortran -o wrf.exe -O3 -ftree-vectorize -ftree-loop-linear
-funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian
-frecord-marker=4 wrf.o ../main/module_wrf_top.o libwrflib.a
/root/Kunal/WRFV3.2/external/fftpack/fftpack5/libfftpack.a
/root/Kunal/WRFV3.2/external/io_grib1/libio_grib1.a
/root/Kunal/WRFV3.2/external/io_grib_share/libio_grib_share.a
/root/Kunal/WRFV3.2/external/io_int/libwrfio_int.a
/root/Kunal/WRFV3.2/external/esmf_time_f90/libesmf_time.a
/root/Kunal/WRFV3.2/external/RSL_LITE/librsl_lite.a
/root/Kunal/WRFV3.2/frame/module_internal_header_util.o
/root/Kunal/WRFV3.2/frame/pack_utils.o
/root/Kunal/WRFV3.2/external/io_pnetcdf/libwrfio_pnf.a
-L/root/Kunal/pnetcdf/lib -lpnetcdf
../main/module_wrf_top.o: In function `__module_wrf_top__wrf_finalize':
module_wrf_top.f90:(.text+0x961): undefined reference to `med_shutdown_io_'
../main/module_wrf_top.o: In function `__module_wrf_top__wrf_init':
module_wrf_top.f90:(.text+0xa74): undefined reference to `init_modules_'
module_wrf_top.f90:(.text+0xa87): undefined reference to `init_modules_'
module_wrf_top.f90:(.text+0xad5): undefined reference to
`__module_check_a_mundo__check_nml_consistency'
module_wrf_top.f90:(.text+0xada): undefined reference to
`__module_check_a_mundo__set_physics_rconfigs'
'
'
'
-------------------------------
These errors do not come with version 3.1.1 and comes with version 3.2.1. I
am compiling the test case em_b_wave.
Attaching the compile.log file for your reference.
Kindly let me know if you have any suggestions to resolve this.
Thanks & Regards,
Kunal
On Wed, Dec 8, 2010 at 10:44 PM, Kunal Rao <kunalgrao at gmail.com> wrote:
> I had done " $ ./compile em_b_wave |tee compile.log " . Now, cleaned again
> and this time did "$ ./compile em_b_wave >& compile.log".
> Now, it has recorded the undefined reference errors in the log file.
> Attaching the same. Kindly go through that and let me know
> if you have any suggestions to resolve it.
>
> Thanks & Regards,
> Kunal
>
>
>
>
> On Wed, Dec 8, 2010 at 10:08 PM, wrfhelp <wrfhelp at ucar.edu> wrote:
>
>> I cannot find any compile errors in your file. Did you do 'compile
>> em_b_wave >& (with &) compile.out'?
>> If you are working in c-shell environment, you may need to type
>> compile em_b_wave > compile.out 2>&1
>> to catch errors.
>>
>> wrfhelp
>>
>>
>> On Dec 8, 2010, at 11:27 AM, Kunal Rao wrote:
>>
>> Hello
>>>
>>> Thanks for your reply.
>>>
>>> As per your suggestion, I did 'clean -a' and then configured and compiled
>>> again. I do not see any hints in the log file to figure out what might be
>>> going wrong/missing. I have set the env. variable PNETCDF to the path where
>>> I have parallel netcdf and also changed "io_form_*" in namelist.input in
>>> /test/em_b_wave folder from 2 to 11 for parallel netcdf. Everything is
>>> compiled with gcc and gfortran compiler.
>>>
>>> Kindly find attached the configure.wrf file and the compile.log file for
>>> your reference. Kindly let me know if you have any suggestions.
>>>
>>> Thanks & Regards,
>>> Kunal
>>>
>>>
>>> Kindly find attached the configure.wrf file and compile.log file.
>>>
>>> On Tue, Dec 7, 2010 at 9:57 PM, wrfhelp <wrfhelp at ucar.edu> wrote:
>>> Can you try to first do 'clean -a', and repeat the compile procedure?
>>> When you compile,
>>> please save the compile output to a file (e..g compile em_b_wave >&
>>> compile.out), and see if
>>> there is other information in the output file that may give you hint on
>>> the compile problem. If
>>> you cannot figure it out, please send the entire compile.out file over.
>>>
>>> wrfhelp
>>>
>>>
>>> On Dec 7, 2010, at 5:43 PM, Kunal Rao wrote:
>>>
>>> Hello
>>>
>>> I am trying to compile WRF V 3.2.1 with parallel netCDF v1.2.0 and using
>>> gcc and gfortran compiler.
>>>
>>> My configure step is done, but when I compile ( tried with $ ./compile
>>> em_b_wave ) I get the following and many such
>>> undefined reference errors.
>>>
>>> -----------------
>>> gfortran -o ideal.exe -O3 -ftree-vectorize -ftree-loop-linear
>>> -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian
>>> -frecord-marker=4 ideal.o ../dyn_em/module_initialize_b_wave.o
>>> libwrflib.a /root/Kunal/WRFV3/external/fftpack/fftpack5/libfftpack.a
>>> /root/Kunal/WRFV3/external/io_grib1/libio_grib1.a
>>> /root/Kunal/WRFV3/external/io_grib_share/libio_grib_share.a
>>> /root/Kunal/WRFV3/external/io_int/libwrfio_int.a
>>> /root/Kunal/WRFV3/external/esmf_time_f90/libesmf_time.a
>>> /root/Kunal/WRFV3/frame/module_internal_header_util.o
>>> /root/Kunal/WRFV3/frame/pack_utils.o
>>> ideal.o: In function `med_initialdata_output_':
>>>
>>> ideal.f90:(.text+0x6e): undefined reference to
>>> `__module_date_time__calc_current_date'
>>> ideal.f90:(.text+0x97): undefined reference to `construct_filename1_'
>>> ideal.f90:(.text+0xd9): undefined reference to
>>> `__module_io_domain__output_input'
>>> ideal.f90:(.text+0xe9): undefined reference to
>>> `__module_io_domain__open_w_dataset'
>>>
>>> ----------------
>>>
>>> I don't have netCDF installed on my system, only parallel NetCDF is
>>> installed. I have set the PNETCDF env. variable with the path to Parallel
>>> NetCDF. That should be sufficient, right ?
>>>
>>> Any tips on what is missing / going wrong here. How do I resolve this
>>> undefined reference errors ?
>>>
>>> Thanks & Regards,
>>> Kunal
>>>
>>> wrfhelp
>>> http://www.mmm.ucar.edu/wrf/users/supports/wrfhelp.html
>>>
>>>
>>>
>>>
>>> <configure.wrf><compile.log>
>>>
>>
>> wrfhelp
>> http://www.mmm.ucar.edu/wrf/users/supports/wrfhelp.html
>>
>>
>>
>>
>
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