[pyngl-talk] PYNIO not supporting to read HDF5 format

[Shanru Tian]

Hi,
  Does PYNIO not support to read the HDF5 format ? you can see the errors
below.


--------------

NC4_open: path
./precip.mon.total.v501.nc mode 4096 params 0
HDF5 error messages turned on.
./precip.mon.total.v501.nc mode 4096
nc4_grp_list_add: name /
HDF5-DIAG: Error detected in HDF5 (1.10.4) thread 47273485308896:
  #000: H5F.c line 509 in H5Fopen(): unable to open file
    major: File accessibilty
    minor: Unable to open file
  #001: H5Fint.c line 1400 in H5F__open(): unable to open file
    major: File accessibilty
    minor: Unable to open file
  #002: H5Fint.c line 1615 in H5F_open(): unable to lock the file
    major: File accessibilty
    minor: Unable to open file
  #003: H5FD.c line 1640 in H5FD_lock(): driver lock request failed
    major: Virtual File Layer
    minor: Can't update object
  #004: H5FDsec2.c line 939 in H5FD_sec2_lock(): file locking disabled on
this file system (use HDF5_USE_FILE_LOCKING environment variable to
override), errno = 38, error message = 'Function not implemented'
    major: File accessibilty
    minor: Bad file ID accessed
ERROR: file
/home/conda/feedstock_root/build_artifacts/libnetcdf_1545075232789/work/libhdf5/hdf5open.c,
line 506.
NetCDF: HDF error
HDF5-DIAG: Error detected in HDF5 (1.10.4) thread 47273485308896:
  #000: H5F.c line 509 in H5Fopen(): unable to open file
    major: File accessibilty
    minor: Unable to open file
  #001: H5Fint.c line 1400 in H5F__open(): unable to open file
    major: File accessibilty
    minor: Unable to open file
  #002: H5Fint.c line 1615 in H5F_open(): unable to lock the file
    major: File accessibilty
    minor: Unable to open file
  #003: H5FD.c line 1640 in H5FD_lock(): driver lock request failed
    major: Virtual File Layer
    minor: Can't update object
  #004: H5FDsec2.c line 939 in H5FD_sec2_lock(): file locking disabled on
this file system (use HDF5_USE_FILE_LOCKING environment variable to
override), errno = 38, error message = 'Function not implemented'
    major: File accessibilty
    minor: Bad file ID accessed
nc4_close_hdf5_file: h5->path
./precip.mon.total.v501.nc abort 1
nc4_rec_grp_HDF5_del: grp->name /
nc4_close_netcdf4_file: h5->path ./udel.airtemp.precip/
precip.mon.total.v501.nc abort 1
nc4_rec_grp_del: grp->name /
warning:_NclOpenFile: Can not open file <./precip.mon.total.v501.nc>; file
format not supported or file is corrupted
Traceback (most recent call last):
  File "test2.udel-prcp.py", line 17, in <module>
    f    = Nio.open_file(os.path.join(dirc,"precip.mon.total.v501.nc"))
  File
"/home/1833/anaconda3/envs/ncl_to_python/lib/python3.7/site-packages/PyNIO/Nio.py",
line 751, in open_file
    file = _nio.open_file(filename,mode,options,history,format)
Nio.NIOError: Unable to open file

*Shanru TIAN *
*PhD Student in Climatology *
*University of Delaware *
*TO BE MODEST, TO BE GREAT               *
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