[pyngl-talk] PyNIO-1.3.0b1

Scott Shaw sshaw at sgi.com
Fri Feb 6 14:26:39 MST 2015


In the build environment for PyNIO I am only using GRIB2 and NetCDF-4 but when loading the nio python module I get the following error.

>>> import nio
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
ImportError: /nas/sshaw/bmarks/NCAR-2015/pyResBench/PyNIO/lib64/python2.6/site-packages/PyNIO/nio.so: undefined symbol: HE5_GDdetach

I believe this symbol is located in the HDF-EOS2 libs but I did not build this optional package.  Prior to executing the "python setup.py build" for PyNIO I only requested Grib2 and Netcdf4 using the env settings detailed in the INSTALL file as shown below.  Any ideas how to get around this issue?

PyNIO/PyNIO-1.3.0b1> env | grep HAS
HAS_GRIB2=1
HAS_NETCDF4=1

I have the following packages installed using a common external-files directory for lib, include, bin, share and man directories.

g2clib-1.4.0
hdf-4.2.10
jasper-1.900.1
jpeg-6b
libpng-1.6.16
netcdf-4.3.1
szip-2.1
zlib-1.2.5

external-files> ls
bin  examples  include  lib  man  ncl_ncarg  share  src

OS: SUSE Linux Enterprise Server 11 (x86_64) SP3
Compiler: gcc version 4.3.4

Thanks,
Scott Shaw
SGI - Apps Engineer
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