[ncl-talk] Fwd: libgsl.so.25: cannot open shared object file
Anie K Lal
Anieklal at cas.iitd.ac.in
Fri Nov 11 22:58:05 MST 2022
Hi all,
I am facing a issue with ncl installation. Please see the forwaded mail
below. Kindly help.
-------- Original Message --------
Subject: libgsl.so.25: cannot open shared object file
Date: 13.08.2022 11:48
From: Anie K Lal <Anieklal at cas.iitd.ac.in>
To: ncl-install at mailman.ucar.edu
Hi all
I am trying to install ncl under conda environment. I had anaconda
already installed in my system. I tried installing ncl using:
"conda create -n ncl_stable -c conda-forge ncl"
But while running ncl script I am getting the following error:
"ncl: error while loading shared libraries: libgsl.so.25: cannot open
shared object file: No such file or directory"
Kindly find the following information regarding my installation:
# packages in environment at /home/anaconda3/envs/ncl_stable:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
blosc 1.21.1 h83bc5f7_3 conda-forge
boost-cpp 1.74.0 h75c5d50_8 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.18.1 h7f98852_0 conda-forge
ca-certificates 2022.07.19 h06a4308_0
cairo 1.16.0 ha61ee94_1012 conda-forge
cfitsio 4.1.0 hd9d235c_0 conda-forge
curl 7.84.0 h5eee18b_0
esmf 8.2.0 nompi_h1ee4d8d_2
conda-forge
expat 2.4.8 h27087fc_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.0 h8e229c2_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
freeglut 3.2.2 h9c3ff4c_1 conda-forge
freetype 2.11.0 h70c0345_0
freexl 1.0.6 h7f98852_0 conda-forge
geos 3.11.0 h27087fc_0 conda-forge
geotiff 1.7.1 h4fc65e6_3 conda-forge
gettext 0.21.0 hf68c758_0
giflib 5.2.1 h36c2ea0_2 conda-forge
gsl 2.7.1 h6e86dc7_1
hdf4 4.2.15 h9772cbc_4 conda-forge
hdf5 1.12.2 nompi_h2386368_100
conda-forge
hdfeos2 2.20 hca1e490_1001 conda-forge
hdfeos5 5.1.16 hc2f950b_10 conda-forge
icu 70.1 h27087fc_0 conda-forge
jasper 2.0.33 ha77e612_0 conda-forge
jpeg 9e h166bdaf_2 conda-forge
json-c 0.16 hc379101_0 conda-forge
kealib 1.4.15 ha7026e8_1 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
krb5 1.19.3 h3790be6_0 conda-forge
lcms2 2.12 hddcbb42_0 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libblas 3.9.0 16_linux64_openblas
conda-forge
libcblas 3.9.0 16_linux64_openblas
conda-forge
libcurl 7.84.0 h91b91d3_0
libdap4 3.20.6 hd7c4107_2 conda-forge
libdeflate 1.13 h166bdaf_0 conda-forge
libedit 3.1.20210910 h7f8727e_0
libev 4.33 h516909a_1 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libgcc-ng 12.1.0 h8d9b700_16 conda-forge
libgdal 3.5.1 h53011df_2 conda-forge
libgfortran-ng 12.1.0 h69a702a_16 conda-forge
libgfortran5 12.1.0 hdcd56e2_16 conda-forge
libglib 2.72.1 h2d90d5f_0 conda-forge
libglu 9.0.0 he1b5a44_1001 conda-forge
libgomp 12.1.0 h8d9b700_16 conda-forge
libiconv 1.16 h516909a_0 conda-forge
libkml 1.3.0 h238a007_1014 conda-forge
libnetcdf 4.8.1 nompi_h21705cb_104
conda-forge
libnghttp2 1.47.0 h727a467_0 conda-forge
libnsl 2.0.0 h7f98852_0 conda-forge
libopenblas 0.3.21 pthreads_h78a6416_0
conda-forge
libpng 1.6.37 h753d276_4 conda-forge
libpq 14.5 hd77ab85_0 conda-forge
librttopo 1.1.0 hf730bdb_11 conda-forge
libspatialite 5.0.1 h38b5f51_18 conda-forge
libsqlite 3.39.2 h753d276_1 conda-forge
libssh2 1.10.0 haa6b8db_3 conda-forge
libstdcxx-ng 12.1.0 ha89aaad_16 conda-forge
libtiff 4.4.0 h0e0dad5_3 conda-forge
libuuid 2.32.1 h7f98852_1000 conda-forge
libwebp-base 1.2.4 h166bdaf_0 conda-forge
libxcb 1.13 h7f98852_1004 conda-forge
libxml2 2.9.14 h22db469_4 conda-forge
libzip 1.9.2 hc869a4a_1 conda-forge
libzlib 1.2.12 h166bdaf_2 conda-forge
lz4-c 1.9.3 h9c3ff4c_1 conda-forge
ncl 6.6.2 hfc90af8_40 conda-forge
ncurses 6.3 h27087fc_1 conda-forge
netcdf-fortran 4.6.0 nompi_hc402ea5_100
conda-forge
nspr 4.33 h295c915_0
nss 3.78 h2350873_0 conda-forge
openjpeg 2.4.0 hb52868f_1 conda-forge
openssl 1.1.1q h166bdaf_0 conda-forge
pcre 8.45 h9c3ff4c_0 conda-forge
pixman 0.40.0 h36c2ea0_0 conda-forge
poppler 22.04.0 h1434ded_1 conda-forge
poppler-data 0.4.11 hd8ed1ab_0 conda-forge
postgresql 14.5 hfdbbde3_0 conda-forge
proj 9.0.1 h93bde94_1 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
readline 8.1.2 h0f457ee_0 conda-forge
snappy 1.1.9 hbd366e4_1 conda-forge
sqlite 3.39.2 h4ff8645_1 conda-forge
tiledb 2.9.5 h1e4a385_0 conda-forge
tzcode 2022b h166bdaf_0 conda-forge
tzdata 2022b h191b570_0 conda-forge
udunits2 2.2.28 hc3e0081_0 conda-forge
xerces-c 3.2.3 h55805fa_5 conda-forge
xorg-fixesproto 5.0 h7f98852_1002 conda-forge
xorg-imake 1.0.7 0 conda-forge
xorg-inputproto 2.3.2 h7f98852_1002 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.0.10 h7f98852_0 conda-forge
xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
xorg-libx11 1.7.2 h7f98852_0 conda-forge
xorg-libxau 1.0.9 h7f98852_0 conda-forge
xorg-libxaw 1.0.14 h7f98852_1 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h7f98852_1 conda-forge
xorg-libxfixes 5.0.3 h7f98852_1004 conda-forge
xorg-libxi 1.7.10 h7f98852_0 conda-forge
xorg-libxmu 1.1.3 h7f98852_0 conda-forge
xorg-libxpm 3.5.13 h7f98852_0 conda-forge
xorg-libxrender 0.9.10 h7f98852_1003 conda-forge
xorg-libxt 1.2.1 h7f98852_2 conda-forge
xorg-makedepend 1.0.6 h27087fc_2 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
zlib 1.2.12 h166bdaf_2 conda-forge
zstd 1.5.2 h8a70e8d_4 conda-forge
## conda --version
conda 4.13.0
## which ncl
/home/anaconda3/envs/ncl_stable/bin/ncl
## ncl -V
ncl: error while loading shared libraries: libgsl.so.25: cannot open
shared object file: No such file or directory
## env | grep NCARG
NCARG_ROOT=/home/anaconda3/envs/ncl_stable
****************************************************************
I have tried the following:
1. Tried installing GSL using conda "conda install -c conda-forge gsl "
. But it didn't work, showing the same error.
2. Uninstalled, then reinstalled NCL using conda. Didn't work.
3. Tried using miniconda instead of anaconda... It also didn't work.
Same error persists.
NOTE: I was using ncl smoothly in the same system under conda
environment earlier. This problem started after a re installation of
conda.
Kindly help me with this issue since I am struggling with this for some
time now.
Looking forward to any kind of help and advice.
Thank you
Anie
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