[ncl-talk] ncl-talk Digest, Vol 161, Issue 23
Mary Haley
haley at ucar.edu
Wed Apr 19 09:06:22 MDT 2017
Dawit,
When you send messages to ncl-talk, I have a couple of suggestions:
[1] When you have a new question, please compose a new message with a
meaningful subject. A subject of "Re: ncl-talk Digest, Vol 161, Issue 23"
may cause some people to skip the message.
[2] Only send your message to ncl-talk at ucar.edu and don't CC other people.
Otherwise, we all get multiple messages in our mailboxes.
Thanks for your consideration.
The source of your problem is this line:
res at gsnCenterString = yyyymm({192112})
Whenever you use the '{...}' syntax, this is called "coordinate
subscripting". To use coordinate subscripting, yyyymm must have a
coordinate array associated with it that defines the coordinates.
To assign a coordinate array to a one-dimensional array, you need to name
the dimension and then assign the coordinate array:
year = yyyymm/100
yrStrt = 1901
yrLast = 2014
nyear = yrLast-yrStrt+1
yyyymm = yyyymm_time(yrStrt, yrLast, "integer")
yyyymm*!0* = "*time*" ; Name the dimension of "yyyymm" so we can
assign a coordinate array
yyyymm&time = yyyymm ; Assign a coordinate array called "*time*"
Note that the name "time" is arbitrary. You just need to make sure that
whatever name you give the dimension is the same name you use when you
assign the coordinate array:
yyyymm*!0* = "*date*" ; Name the dimension of "yyyymm" so we can
assign a coordinate array
yyyymm*&date* = yyyymm ; Assign a coordinate array called "*date*"
Now, you should be able to use coordinate subscripting:
res at gsnCenterString = yyyymm({192112})
--Mary
On Tue, Apr 18, 2017 at 8:50 AM, Dawit Abebe <dawit.kan at gmail.com> wrote:
> Dear All,
>
> I was trying to plot a spatial map of SPI but having a challenge indexing
> coordinates. I pasted my script as well as the point a stuck (red text)
> from NCL output below.
>
> Thank you so much for your support as usual.
>
> Dawit
>
> *1. My script*
>
> ;===========================================================
> ==============================
> ;spi spatial map plot
> ;===========================================================
> ==============================
> load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl"
> load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_csm.ncl"
> load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/contributed.ncl"
>
> begin
>
> diri = "./"
> fili = "pre_cru_1901_2014.nc"
> f = addfile(diri+fili, "r")
>
> prc = f->pre
> prc at _FillValue = -999.0
> pmsg = prc at _FillValue
> printVarSummary(prc)
>
> dimp = dimsizes(prc)
> ntim = dimp(0)
> nlat = dimp(1)
> mlon = dimp(2)
>
> run = (/12/)
> nrun = dimsizes(run)
>
> spi = new((/nrun,ntim,nlat,mlon/), typeof(prc), pmsg)
>
> opt = True
>
> do nr=0,nrun-1
> spi(nr,:,:,:)= dim_spi_n(prc, run(nr), True, 0)
> end do
>
> copy_VarCoords(prc,spi(0,:,:,:))
> spi at long_name = "SPI"
> spi!0 = "run"
> spi&run = run
> printVarSummary(spi)
>
> ;==========================================================
> ==============================
> ; Plot parameter
> ;==========================================================
> ==============================
> dimp = dimsizes(prc)
> ntim = dimp(0)
> nlat = dimp(1)
> mlon = dimp(2)
>
> yyyymm = f->time
> yyyymm = yyyymm/100
>
> year = yyyymm/100
> yrStrt = 1901
> yrLast = 2014
> nyear = yrLast-yrStrt+1
> yyyymm = yyyymm_time(yrStrt, yrLast, "integer")
> yrfrac = (/ yyyymm_to_yyyyfrac(yyyymm, 0.0) /)
>
> prc&time = (/ yyyymm /)
>
> ;===========================================================
> =============================
>
> wks = gsn_open_wks ("ps","spi")
> gsn_define_colormap(wks,"BlueWhiteOrangeRed")
> gsn_reverse_colormap(wks) ; Reverse
> the color map.
>
> res = True
> res at gsnDraw = False ; don't
> draw
> res at gsnFrame = False ; don't
> advance frame
> res at gsnSpreadColors = True
>
> res at cnFillOn = True ; color
> Fill
> res at cnFillMode = "RasterFill" ; Raster
> Mode
> res at cnLinesOn = False ; Turn
> off contour lines
> res at cnLevelSelectionMode = "ManualLevels" ; set
> manual contour levels
> res at cnMinLevelValF = -3.0 ; set min
> contour level
> res at cnMaxLevelValF = 3.0 ; set max
> contour level
> res at cnLevelSpacingF = 0.5 ; set
> contour spacing
> res at lbLabelBarOn = False ; turn
> off individual cb's
>
> resP = True ; panel
> resources
> resP at txString = False
> resP at gsnPanelLabelBar= True ; add
> common colorbar
>
> plot = new ( 5, "graphic")
>
> do nl=0,nlat-1
> do ml=0,mlon-1
> do nr=0,nrun-1
> spi(nr,:,:,:)= dim_spi_n(prc, run(nr), True, 0)
> spi at long_name = "SPI"
> spi at units = "nrun="+run(nr)
> copy_VarCoords(prc,spi(0,:,:,:))
> spi!0 = "run"
> spi&run = run
> printVarSummary(spi)
>
> res at gsnCenterString = yyyymm({192112})
> plot(0) = gsn_csm_contour_map_ce(wks,spi({192112},:,:,:), res)
>
> res at gsnCenterString = yyyymm({192212})
> plot(1) = gsn_csm_contour_map_ce(wks,spi({192212},:,:,:), res)
>
> res at gsnCenterString = yyyymm({192712})
> plot(2) = gsn_csm_contour_map_ce(wks,spi({192712},:,:,:), res)
>
> res at gsnCenterString = yyyymm({197312})
> plot(3) = gsn_csm_contour_map_ce(wks,spi({197312},:,:,:), res)
>
> res at gsnCenterString = yyyymm({198412})
> plot(4) = gsn_csm_contour_map_ce(wks,spi({198412},:,:,:), res)
> end do
> end do
> end do
>
> gsn_panel(wks,plot,(/5,1/),resP) ; now draw as one plot
>
> end
>
> *2. NCL output from exciting the script above*
>
> (my_ncl) Dagemawes-MacBook-Pro:~ dawitabebe$ ncl -Q
> spi12_plotmap_script.ncl
>
>
> Variable: prc
>
> Type: double
>
> Total Size: 393984 bytes
>
> 49248 values
>
> Number of Dimensions: 3
>
> Dimensions and sizes: [time | 1368] x [lat | 4] x [lon | 9]
>
> Coordinates:
>
> time: [ 380..41987]
>
> lat: [3.75..5.25]
>
> lon: [36.75..40.75]
>
> Number Of Attributes: 5
>
> correlation_decay_distance : 450
>
> long_name : precipitation
>
> units : mm/month
>
> missing_value : 9.96920996839e+36
>
> _FillValue : -999
>
>
> Variable: spi
>
> Type: double
>
> Total Size: 393984 bytes
>
> 49248 values
>
> Number of Dimensions: 4
>
> Dimensions and sizes: [run | 1] x [time | 1368] x [lat | 4] x [lon | 9]
>
> Coordinates:
>
> run: [12..12]
>
> time: [ 380..41987]
>
> lat: [3.75..5.25]
>
> lon: [36.75..40.75]
>
> Number Of Attributes: 2
>
> long_name : SPI
>
> _FillValue : -999
>
>
> Variable: spi
>
> Type: double
>
> Total Size: 393984 bytes
>
> 49248 values
>
> Number of Dimensions: 4
>
> Dimensions and sizes: [run | 1] x [time | 1368] x [lat | 4] x [lon | 9]
>
> Coordinates:
>
> run: [12..12]
>
> time: [190101..201412]
>
> lat: [3.75..5.25]
>
> lon: [36.75..40.75]
>
> Number Of Attributes: 4
>
> units : nrun=12
>
> long_name : SPI
>
> run : 12
>
> _FillValue : -999
>
> fatal:NclOneDValGetClosestIndex: finish coordinate index out of range,
> can't continue
>
> fatal:Could not obtain coordinate indexes, unable to perform subscript
>
> fatal:["Execute.c":8640]:Execute: Error occurred at or near line 98 in
> file spi12_plotmap_script.ncl
>
>
> (my_ncl) Dagemawes-MacBook-Pro:~ dawitabebe$
> ……………………………………...
>
>
> On Apr 18, 2017, at 10:29 AM, ncl-talk-request at ucar.edu wrote:
>
> Send ncl-talk mailing list submissions to
> ncl-talk at ucar.edu
>
> To subscribe or unsubscribe via the World Wide Web, visit
> http://mailman.ucar.edu/mailman/listinfo/ncl-talk
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> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of ncl-talk digest..."
>
>
> Today's Topics:
>
> 1. Re: Problem with gsn_add_text (Stavros Dafis)
> 2. Problem with contour plot (Guilherme Martins)
> 3. Re: Problem with gsn_add_text (Rick Brownrigg)
> 4. Re: Problem with contour plot (Mary Haley)
> 5. how to draw this kind of plot (wen)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Mon, 17 Apr 2017 21:48:31 +0300
> From: Stavros Dafis <sdafis at cc.uoi.gr>
> Subject: Re: [ncl-talk] Problem with gsn_add_text
> To: Rick Brownrigg <brownrig at ucar.edu>
> Cc: "ncl-talk at ucar.edu" <ncl-talk at ucar.edu>
> Message-ID: <1492454911.58f50dffc9203 at webmail.uoi.gr>
> Content-Type: text/plain; charset=ISO-8859-7
>
> Dear Rick, thank you for your suggestion, I have tried to assign both the
> FillValue and the missing value (@missing_value) but nothing seems to work.
>
> I forgot to mention that I am using NCL 6.2.0, 6.3.0 and 6.4.0, on
> different
> machines.
>
>
> --
> Stavros NTAFIS (DAFIS)
> -----------------------------------------------
> Physicist - Meteorologist, M.Sc.
> Research Associate, National Observatory of Athens
> (+33)9 81 94 22 12 <+33%209%2081%2094%2022%2012>, Mobile: +30 697 04 20
> 242
> ---------------
> Weather charts:
> http://www.meteo.gr
> http://www.meteo.gr/meteomaps/
>
>
> Quoting Rick Brownrigg <brownrig at ucar.edu>:
>
> Hi Stavros,
>
> I don't know for certain, but I suspect you need to assign the _FillValue
> to the string array "points" that you constructed from "t2" (I don't see
> how the attributes from t2 would carry to points via the sprintf() ).
>
> Hope that helps...
> Rick
>
> On Sun, Apr 16, 2017 at 12:56 PM, Stavros Dafis <sdafis at cc.uoi.gr> wrote:
>
> Hello everyone, I am facing a problem with the function gsn_add_text. In
> the
> description of the function, it is mentioned that no missing values will be
> plotted:
>
> “This function attaches a list of text strings to the given plot.
> The text
> strings will be drawn only when the plot is drawn. If a missing value is
> encountered in the text strings or x/y values, then no text string will be
> drawn at this pair.”
>
> My script reads a netCDF file with 3 variables t2(lat,lon), lat(lat),
> lon(lon),
> so in order to attach values on the plot using this function, I have to
> make
> new 2-D variables for lat/lon and define the string to be plotted on the
> map.
> Values are assigned just fine on the plot, over the land, but missing
> values
> are also printed over the sea. I tried to use landsea masking but my data
> have
> high horizontal resolution (5km). Any suggestions?
>
> I have the same problem with WRF data, with already 2-D lat/lon arrays.
>
> This is the part of the code which prints the values:
> .
> .
> .
> contour = gsn_csm_contour_map(wks,t2,res)
>
> t2 at missing_value = -1
> t2 at _FillValue = -1
> (default missing values = -999)
>
> lat2 = new(dimsizes(t2),typeof(lat),-1)
> lon2 = new(dimsizes(t2),typeof(lon),-1)
>
> nb = dimsizes(t2)
>
> do nl=0,nb(0)-1,1
> do ml=0,nb(1)-1,1
>
> lat2(nl,ml) = lat(nl)
> lon2(nl,ml) = lon(ml)
>
> end do
> end do
>
> points = sprintf("%3.0f", t2)
> ;points = ""+t2(:,:)+""
>
> values = gsn_add_text(wks,contour,points,lon2(:,:),lat2(:,:),True)
>
>
>
> --
> Stavros NTAFIS (DAFIS)
> -----------------------------------------------
> Physicist - Meteorologist, M.Sc.
> Research Associate, National Observatory of Athens
> (+33)9 81 94 22 12 <+33%209%2081%2094%2022%2012>, Mobile: +30 697 04 20
> 242
> ---------------
> Weather charts:
> http://www.meteo.gr
> http://www.meteo.gr/meteomaps/
>
>
>
> _______________________________________________
> ncl-talk mailing list
> ncl-talk at ucar.edu
> List instructions, subscriber options, unsubscribe:
> http://mailman.ucar.edu/mailman/listinfo/ncl-talk
>
>
>
>
> ------------------------------
>
> Message: 2
> Date: Mon, 17 Apr 2017 19:00:02 +0000
> From: Guilherme Martins <jgmsantos at gmail.com>
> Subject: [ncl-talk] Problem with contour plot
> To: NCL <ncl-talk at ucar.edu>
> Message-ID:
> <CAH+t_hMaRUDHM0wMkLC9cz2pFmMYGXgGC+X+bcxDLo=+8fgWQg at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Dear users,
>
> After searching extensively on the NCL website I was not able to find a
> solution to my problem. I only want values within the contour of the
> continent, but some edges appear in the figure that are stemming from the
> mask that I applied and I do not know how to remove this. The figure is
> attached for a better view of my problem.
>
> Best regards,
>
> Guilherme.
> --
> ------------------------------------------------------------
> ------------------------------------
> Instituto Nacional de Pesquisas Espaciais (INPE)
> Centro de Previs?o de Tempo e Estudos Clim?ticos (CPTEC)
> Divis?o de Sat?lites e Sistemas Ambientais (DSA)
> Programa de Monitoramento de Queimadas
> Telefone (INPE/CP): +55 12 3186-9205 <+55%2012%203186-9205> || Celular
> (TIM): +55 12 98111-4292 <+55%2012%2098111-4292>
> E-mail: guilherme.martins at inpe.br || jgmsantos at gmail.com
> Skype: guilherme.martins.
> Homepage: https://sites.google.com/site/jgmsantos
> Curr?culo Lattes: http://lattes.cnpq.br/5997657584785803
> ------------------------------------------------------------
> ------------------------------------
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> ------------------------------
>
> Message: 3
> Date: Mon, 17 Apr 2017 14:32:43 -0600
> From: Rick Brownrigg <brownrig at ucar.edu>
> Subject: Re: [ncl-talk] Problem with gsn_add_text
> To: Stavros Dafis <sdafis at cc.uoi.gr>
> Cc: "ncl-talk at ucar.edu" <ncl-talk at ucar.edu>
> Message-ID:
> <CAGKRhbHX1v-1sJ3G=QrXGA+0wSJ2KKsBB_7GqbCnp9krh9fkkQ at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hi,
>
> You used -1 as _FillValue for variable "t2". Note it is an integer value --
> what type is the array t2 -- float or int? In any case, you created the
> formatted string array "points" from t2 as "%3.0f", so that any data values
> in t2 that were -1 are now " -1", and thus it seems your _FillValue should
> be " -1". Did you do this, and do the types between data and _FillValue
> agree everywhere?
>
> If that's not the issue, I think we may need to see script and dataset to
> figure out what the issue is.
>
> HTH...
> Rick
>
> On Mon, Apr 17, 2017 at 12:48 PM, Stavros Dafis <sdafis at cc.uoi.gr> wrote:
>
> Dear Rick, thank you for your suggestion, I have tried to assign both the
> FillValue and the missing value (@missing_value) but nothing seems to work.
>
> I forgot to mention that I am using NCL 6.2.0, 6.3.0 and 6.4.0, on
> different
> machines.
>
>
> --
> Stavros NTAFIS (DAFIS)
> -----------------------------------------------
> Physicist - Meteorologist, M.Sc.
> Research Associate, National Observatory of Athens
> (+33)9 81 94 22 12 <+33%209%2081%2094%2022%2012>, Mobile: +30 697 04 20
> 242
> ---------------
> Weather charts:
> http://www.meteo.gr
> http://www.meteo.gr/meteomaps/
>
>
> Quoting Rick Brownrigg <brownrig at ucar.edu>:
>
> Hi Stavros,
>
> I don't know for certain, but I suspect you need to assign the _FillValue
> to the string array "points" that you constructed from "t2" (I don't see
> how the attributes from t2 would carry to points via the sprintf() ).
>
> Hope that helps...
> Rick
>
> On Sun, Apr 16, 2017 at 12:56 PM, Stavros Dafis <sdafis at cc.uoi.gr>
>
> wrote:
>
>
> Hello everyone, I am facing a problem with the function gsn_add_text.
>
> In
>
> the
> description of the function, it is mentioned that no missing values
>
> will be
>
> plotted:
>
> “This function attaches a list of text strings to the given plot.
> The text
> strings will be drawn only when the plot is drawn. If a missing value
>
> is
>
> encountered in the text strings or x/y values, then no text string
>
> will be
>
> drawn at this pair.”
>
> My script reads a netCDF file with 3 variables t2(lat,lon), lat(lat),
> lon(lon),
> so in order to attach values on the plot using this function, I have to
> make
> new 2-D variables for lat/lon and define the string to be plotted on
>
> the
>
> map.
> Values are assigned just fine on the plot, over the land, but missing
> values
> are also printed over the sea. I tried to use landsea masking but my
>
> data
>
> have
> high horizontal resolution (5km). Any suggestions?
>
> I have the same problem with WRF data, with already 2-D lat/lon arrays.
>
> This is the part of the code which prints the values:
> .
> .
> .
> contour = gsn_csm_contour_map(wks,t2,res)
>
> t2 at missing_value = -1
> t2 at _FillValue = -1
> (default missing values = -999)
>
> lat2 = new(dimsizes(t2),typeof(lat),-1)
> lon2 = new(dimsizes(t2),typeof(lon),-1)
>
> nb = dimsizes(t2)
>
> do nl=0,nb(0)-1,1
> do ml=0,nb(1)-1,1
>
> lat2(nl,ml) = lat(nl)
> lon2(nl,ml) = lon(ml)
>
> end do
> end do
>
> points = sprintf("%3.0f", t2)
> ;points = ""+t2(:,:)+""
>
> values = gsn_add_text(wks,contour,points,lon2(:,:),lat2(:,:),True)
>
>
>
> --
> Stavros NTAFIS (DAFIS)
> -----------------------------------------------
> Physicist - Meteorologist, M.Sc.
> Research Associate, National Observatory of Athens
> (+33)9 81 94 22 12 <+33%209%2081%2094%2022%2012>, Mobile: +30 697 04 20
> 242
> ---------------
> Weather charts:
> http://www.meteo.gr
> http://www.meteo.gr/meteomaps/
>
>
>
> _______________________________________________
> ncl-talk mailing list
> ncl-talk at ucar.edu
> List instructions, subscriber options, unsubscribe:
> http://mailman.ucar.edu/mailman/listinfo/ncl-talk
>
>
>
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> ------------------------------
>
> Message: 4
> Date: Mon, 17 Apr 2017 15:02:08 -0600
> From: Mary Haley <haley at ucar.edu>
> Subject: Re: [ncl-talk] Problem with contour plot
> To: Guilherme Martins <jgmsantos at gmail.com>
> Cc: NCL <ncl-talk at ucar.edu>
> Message-ID:
> <CACNN_CJz1yvpMXMABZ8FhSEov1T0qN63rzsNBBVXBhLos3UKjg at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Guilherme,
>
> Please see examples shapefiles_21.ncl at:
>
> http://www.ncl.ucar.edu/Applications/shapefiles.shtml#ex21
>
> It explains why you see these "blocky" contours in NCL.
>
> Simply put, if you have four points that represent a box at the edge of a
> domain, and three of them have data one them and one is missing, then NCL
> will only draw contours in half of the box, because it won't extrapolate to
> that missing point.
>
> The real question is: do you simply want the graphics not to have gaps, or
> do you actually want there to be data in locations that fall just outside
> the geographical boundary? You can do things to force values just outside
> the geographical boundary, but this depends on how you are masking in the
> first place.
>
> If you are masking based on a shapefile, then see example shapefiles_18.ncl
> on the same page:
>
> http://www.ncl.ucar.edu/Applications/shapefiles.shtml#ex18
>
> Note, however, that this mask is now returning values outside the range of
> interest.
>
> If you are simply trying to mask your data *graphically* by some
> geographical area, then instead of trying to use a mask function, you can
> draw the full data, and then draw polygons filled in with white in the
> areas you don't want to see graphically. That's what example 21 is
> showing.
>
> --Mary
>
>
> On Mon, Apr 17, 2017 at 1:00 PM, Guilherme Martins <jgmsantos at gmail.com>
> wrote:
>
> Dear users,
>
> After searching extensively on the NCL website I was not able to find a
> solution to my problem. I only want values within the contour of the
> continent, but some edges appear in the figure that are stemming from the
> mask that I applied and I do not know how to remove this. The figure is
> attached for a better view of my problem.
>
> Best regards,
>
> Guilherme.
> --
> ------------------------------------------------------------
> ------------------------------------
> Instituto Nacional de Pesquisas Espaciais (INPE)
> Centro de Previs?o de Tempo e Estudos Clim?ticos (CPTEC)
> Divis?o de Sat?lites e Sistemas Ambientais (DSA)
> Programa de Monitoramento de Queimadas
> Telefone (INPE/CP): +55 12 3186-9205 <+55%2012%203186-9205>
> <+55%2012%203186-9205> || Celular
> (TIM): +55 12 98111-4292 <+55%2012%2098111-4292> <+55%2012%2098111-4292>
> E-mail: guilherme.martins at inpe.br || jgmsantos at gmail.com
> Skype: guilherme.martins.
> Homepage: https://sites.google.com/site/jgmsantos
> Curr?culo Lattes: http://lattes.cnpq.br/5997657584785803
> ------------------------------------------------------------
> ------------------------------------
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> Message: 5
> Date: Tue, 18 Apr 2017 15:29:04 +0800 (CST)
> From: wen <wenguanhuan at 163.com>
> Subject: [ncl-talk] how to draw this kind of plot
> To: ncl-list <ncl-talk at ucar.edu>
> Message-ID: <5de3ed86.9f7f.15b7ff6fb6f.Coremail.wenguanhuan at 163.com>
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> Hi all,
> I am trying to use TRMM 3B42 data to draw this kind of plot. I haven't
> found a example on the website to draw it. Do anyone know how to make it.
> Which function should I
> use. Thank you!
>
>
>
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>
> --
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> ??
> ???
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