[ncl-install] Incompatible library version
Andrei Kurbatov
akurbatov at maine.edu
Fri Mar 27 12:03:24 MDT 2020
Dear Kevin,
Thank you for the update.
I was able to install Anaconda3-2020.02-MacOSX-x86_64.pkg on Mac OS 10.13.6 and ncl works as expected.
Andrei
> Begin forwarded message:
>
>
> Message: 1
> Date: Wed, 25 Mar 2020 14:59:27 -0600
> From: Kevin Hallock <hallock at ucar.edu>
> To: Andrei Kurbatov <akurbatov at maine.edu>
> Cc: Kevin Hallock via Ncl-install <ncl-install at ucar.edu>
> Subject: Re: [ncl-install] Incompatible library version
> Message-ID: <AFC2AA67-0156-460A-B3B4-1771E3016C47 at ucar.edu>
> Content-Type: text/plain; charset="utf-8"
>
> Hi Andrei,
>
> I?m sorry for the inconvenience, it seems there was an incompatibility between certain dependency libraries on conda-forge. A new version of the NCL package is now available and can be installed by running the following commands:
>
> conda activate ncl # substitute your environment name here if it's not "ncl"
> conda update --all -c conda-forge
> ncl -V
>
> Please let us know if updating to the newest build of NCL doesn?t fix the problem.
>
> Thanks,
> Kevin
>
>> On Mar 18, 2020, at 6:15 PM, Andrei Kurbatov via ncl-install <ncl-install at ucar.edu> wrote:
>>
>> After installing Anaconda3-2020.02-MacOSX-x86_64.pkg on Mac OS 10.13.6
>> I installed ncl using conda and got the following message below:
>> ncl
>> dyld: Library not loaded: @rpath/libwebp.7.dylib
>> Referenced from: /Users/avk/opt/anaconda3/envs/ncl/lib/libtiff.5.dylib
>> Reason: Incompatible library version: libtiff.5.dylib requires version 9.0.0 or later, but libwebp.7.dylib provides version 8.0.0
>> Abort trap: 6
>>
>>
>> ncl was working OK in the past.
>> Help very much appreciated, thank you!
>> Andrei
>>
>>
>>
>>
>> All steps are below:
>> conda update -n base -c defaults conda
>> Collecting package metadata (current_repodata.json): done
>> Solving environment: done
>>
>> ## Package Plan ##
>>
>> environment location: /Users/avk/opt/anaconda3
>>
>> added / updated specs:
>> - conda
>>
>>
>> The following packages will be downloaded:
>>
>> package | build
>> ---------------------------|-----------------
>> conda-4.8.3 | py37_0 2.8 MB
>> ------------------------------------------------------------
>> Total: 2.8 MB
>>
>> The following packages will be UPDATED:
>>
>> conda 4.8.2-py37_0 --> 4.8.3-py37_0
>>
>>
>> Proceed ([y]/n)? y
>>
>>
>> Downloading and Extracting Packages
>> conda-4.8.3 | 2.8 MB | ##################################### | 100%
>> Preparing transaction: done
>> Verifying transaction: done
>> Executing transaction: done
>> (base) $ conda create -n ncl -c conda-forge nc
>>
>>
>>
>> (base) $ conda create -n ncl -c conda-forge ncl
>> Collecting package metadata (current_repodata.json): done
>> Solving environment: done
>>
>> ## Package Plan ##
>>
>> environment location: /Users/avk/opt/anaconda3/envs/ncl
>>
>> added / updated specs:
>> - ncl
>>
>>
>> The following packages will be downloaded:
>>
>> package | build
>> ---------------------------|-----------------
>> boost-cpp-1.72.0 | hdf9ef73_0 19.1 MB conda-forge
>> bzip2-1.0.8 | h0b31af3_2 152 KB conda-forge
>> ca-certificates-2019.11.28 | hecc5488_0 145 KB conda-forge
>> cairo-1.16.0 | hec6a9b0_1003 1.3 MB conda-forge
>> certifi-2019.11.28 | py38h32f6830_1 149 KB conda-forge
>> cfitsio-3.470 | h84d2f63_2 1.4 MB conda-forge
>> curl-7.68.0 | h8754def_0 130 KB conda-forge
>> esmf-8.0.0 | nompi_hdaecb5a_5 25.1 MB conda-forge
>> expat-2.2.9 | h4a8c4bd_2 126 KB conda-forge
>> fontconfig-2.13.1 | h6b1039f_1001 270 KB conda-forge
>> freetype-2.10.0 | h8da9a1a_2 881 KB conda-forge
>> freexl-1.0.5 | h1de35cc_1002 42 KB conda-forge
>> geos-3.8.1 | h4a8c4bd_0 901 KB conda-forge
>> geotiff-1.5.1 | h4bdff65_9 125 KB conda-forge
>> gettext-0.19.8.1 | h46ab8bc_1002 3.3 MB conda-forge
>> giflib-5.2.1 | h0b31af3_2 71 KB conda-forge
>> glib-2.58.3 |py38h338c551_1003 3.1 MB conda-forge
>> gsl-2.6 | ha2d443c_0 3.0 MB conda-forge
>> hdf4-4.2.13 | h84186c3_1003 882 KB conda-forge
>> hdf5-1.10.5 |nompi_h3e39495_1104 3.0 MB conda-forge
>> hdfeos2-2.20 | h207910d_1000 236 KB conda-forge
>> hdfeos5-5.1.16 | h60f75e3_5 557 KB conda-forge
>> icu-64.2 | h6de7cb9_1 12.3 MB conda-forge
>> jasper-1.900.1 | h636a363_1006 283 KB conda-forge
>> jpeg-9c | h1de35cc_1001 237 KB conda-forge
>> json-c-0.13.1 | h1de35cc_1001 64 KB conda-forge
>> kealib-1.4.12 | h2324030_0 161 KB conda-forge
>> krb5-1.16.4 | h1752a42_0 1.1 MB conda-forge
>> libblas-3.8.0 | 14_openblas 10 KB conda-forge
>> libcblas-3.8.0 | 14_openblas 10 KB conda-forge
>> libcurl-7.68.0 | h709d2b2_0 527 KB conda-forge
>> libcxx-9.0.1 | 1 1011 KB conda-forge
>> libdap4-3.20.4 | habf5908_0 12.7 MB conda-forge
>> libedit-3.1.20170329 | hcfe32e1_1001 152 KB conda-forge
>> libffi-3.2.1 | h4a8c4bd_1007 42 KB conda-forge
>> libgdal-3.0.4 | hbf8f8d6_2 17.2 MB conda-forge
>> libgfortran-4.0.0 | 2 716 KB conda-forge
>> libiconv-1.15 | h01d97ff_1005 1.3 MB conda-forge
>> libkml-1.3.0 | h169b8f9_1011 482 KB conda-forge
>> libnetcdf-4.7.3 |nompi_hda4e5f1_101 1.2 MB conda-forge
>> libopenblas-0.3.7 | h3d69b6c_4 8.2 MB conda-forge
>> libpng-1.6.37 | h2573ce8_0 298 KB conda-forge
>> libpq-12.2 | h554dc5a_0 2.6 MB conda-forge
>> libspatialite-4.3.0a | hbcd37d4_1037 3.1 MB conda-forge
>> libssh2-1.8.2 | hcdc9a53_2 221 KB conda-forge
>> libtiff-4.1.0 | h2ae36a8_5 613 KB conda-forge
>> libwebp-1.0.2 | hd3bf737_5 841 KB conda-forge
>> libwebp-base-1.1.0 | 2 750 KB conda-forge
>> libxml2-2.9.10 | h53d96d6_0 1.2 MB conda-forge
>> llvm-openmp-8.0.1 | h770b8ee_0 253 KB conda-forge
>> lz4-c-1.8.3 | h6de7cb9_1001 139 KB conda-forge
>> ncl-6.6.2 | h7a7edae_17 59.8 MB conda-forge
>> ncurses-6.1 | h0a44026_1002 1.3 MB conda-forge
>> netcdf-fortran-4.5.2 |nompi_h16a226e_103 697 KB conda-forge
>> openjpeg-2.3.1 | hcdae239_3 377 KB conda-forge
>> openmp-8.0.1 | 0 8 KB conda-forge
>> openssl-1.1.1e | h0b31af3_0 1.9 MB conda-forge
>> pcre-8.44 | h4a8c4bd_0 222 KB conda-forge
>> pip-20.0.2 | py_2 1.0 MB conda-forge
>> pixman-0.38.0 | h01d97ff_1003 611 KB conda-forge
>> poppler-0.67.0 | h16886b5_8 1.6 MB conda-forge
>> poppler-data-0.4.9 | 1 3.4 MB conda-forge
>> postgresql-12.2 | h16d8c28_0 4.5 MB conda-forge
>> proj-6.3.1 | h773a61f_1 10.3 MB conda-forge
>> python-3.8.2 |hdc38147_4_cpython 25.1 MB conda-forge
>> python_abi-3.8 | 1_cp38 4 KB conda-forge
>> readline-8.0 | hcfe32e1_0 415 KB conda-forge
>> setuptools-46.0.0 | py38h32f6830_2 633 KB conda-forge
>> sqlite-3.30.1 | h93121df_0 2.5 MB conda-forge
>> tbb-2018.0.5 | h2d50403_0 150 KB conda-forge
>> tiledb-1.7.0 | hd5e958f_2 2.3 MB conda-forge
>> tk-8.6.10 | hbbe82c9_0 3.3 MB conda-forge
>> tzcode-2019a | h01d97ff_1002 429 KB conda-forge
>> udunits2-2.2.27.6 | h776b7f1_1001 157 KB conda-forge
>> wheel-0.34.2 | py_1 24 KB conda-forge
>> xerces-c-3.2.2 | h8f8adb3_1004 1.5 MB conda-forge
>> xz-5.2.4 | h1de35cc_1001 268 KB conda-forge
>> zlib-1.2.11 | h0b31af3_1006 101 KB conda-forge
>> zstd-1.4.4 | he7fca8b_1 1.0 MB conda-forge
>> ------------------------------------------------------------
>> Total: 255.1 MB
>>
>> The following NEW packages will be INSTALLED:
>>
>> boost-cpp conda-forge/osx-64::boost-cpp-1.72.0-hdf9ef73_0
>> bzip2 conda-forge/osx-64::bzip2-1.0.8-h0b31af3_2
>> ca-certificates conda-forge/osx-64::ca-certificates-2019.11.28-hecc5488_0
>> cairo conda-forge/osx-64::cairo-1.16.0-hec6a9b0_1003
>> certifi conda-forge/osx-64::certifi-2019.11.28-py38h32f6830_1
>> cfitsio conda-forge/osx-64::cfitsio-3.470-h84d2f63_2
>> curl conda-forge/osx-64::curl-7.68.0-h8754def_0
>> esmf conda-forge/osx-64::esmf-8.0.0-nompi_hdaecb5a_5
>> expat conda-forge/osx-64::expat-2.2.9-h4a8c4bd_2
>> fontconfig conda-forge/osx-64::fontconfig-2.13.1-h6b1039f_1001
>> freetype conda-forge/osx-64::freetype-2.10.0-h8da9a1a_2
>> freexl conda-forge/osx-64::freexl-1.0.5-h1de35cc_1002
>> geos conda-forge/osx-64::geos-3.8.1-h4a8c4bd_0
>> geotiff conda-forge/osx-64::geotiff-1.5.1-h4bdff65_9
>> gettext conda-forge/osx-64::gettext-0.19.8.1-h46ab8bc_1002
>> giflib conda-forge/osx-64::giflib-5.2.1-h0b31af3_2
>> glib conda-forge/osx-64::glib-2.58.3-py38h338c551_1003
>> gsl conda-forge/osx-64::gsl-2.6-ha2d443c_0
>> hdf4 conda-forge/osx-64::hdf4-4.2.13-h84186c3_1003
>> hdf5 conda-forge/osx-64::hdf5-1.10.5-nompi_h3e39495_1104
>> hdfeos2 conda-forge/osx-64::hdfeos2-2.20-h207910d_1000
>> hdfeos5 conda-forge/osx-64::hdfeos5-5.1.16-h60f75e3_5
>> icu conda-forge/osx-64::icu-64.2-h6de7cb9_1
>> jasper conda-forge/osx-64::jasper-1.900.1-h636a363_1006
>> jpeg conda-forge/osx-64::jpeg-9c-h1de35cc_1001
>> json-c conda-forge/osx-64::json-c-0.13.1-h1de35cc_1001
>> kealib conda-forge/osx-64::kealib-1.4.12-h2324030_0
>> krb5 conda-forge/osx-64::krb5-1.16.4-h1752a42_0
>> libblas conda-forge/osx-64::libblas-3.8.0-14_openblas
>> libcblas conda-forge/osx-64::libcblas-3.8.0-14_openblas
>> libcurl conda-forge/osx-64::libcurl-7.68.0-h709d2b2_0
>> libcxx conda-forge/osx-64::libcxx-9.0.1-1
>> libdap4 conda-forge/osx-64::libdap4-3.20.4-habf5908_0
>> libedit conda-forge/osx-64::libedit-3.1.20170329-hcfe32e1_1001
>> libffi conda-forge/osx-64::libffi-3.2.1-h4a8c4bd_1007
>> libgdal conda-forge/osx-64::libgdal-3.0.4-hbf8f8d6_2
>> libgfortran conda-forge/osx-64::libgfortran-4.0.0-2
>> libiconv conda-forge/osx-64::libiconv-1.15-h01d97ff_1005
>> libkml conda-forge/osx-64::libkml-1.3.0-h169b8f9_1011
>> libnetcdf conda-forge/osx-64::libnetcdf-4.7.3-nompi_hda4e5f1_101
>> libopenblas conda-forge/osx-64::libopenblas-0.3.7-h3d69b6c_4
>> libpng conda-forge/osx-64::libpng-1.6.37-h2573ce8_0
>> libpq conda-forge/osx-64::libpq-12.2-h554dc5a_0
>> libspatialite conda-forge/osx-64::libspatialite-4.3.0a-hbcd37d4_1037
>> libssh2 conda-forge/osx-64::libssh2-1.8.2-hcdc9a53_2
>> libtiff conda-forge/osx-64::libtiff-4.1.0-h2ae36a8_5
>> libwebp conda-forge/osx-64::libwebp-1.0.2-hd3bf737_5
>> libwebp-base conda-forge/osx-64::libwebp-base-1.1.0-2
>> libxml2 conda-forge/osx-64::libxml2-2.9.10-h53d96d6_0
>> llvm-openmp conda-forge/osx-64::llvm-openmp-8.0.1-h770b8ee_0
>> lz4-c conda-forge/osx-64::lz4-c-1.8.3-h6de7cb9_1001
>> ncl conda-forge/osx-64::ncl-6.6.2-h7a7edae_17
>> ncurses conda-forge/osx-64::ncurses-6.1-h0a44026_1002
>> netcdf-fortran conda-forge/osx-64::netcdf-fortran-4.5.2-nompi_h16a226e_103
>> openjpeg conda-forge/osx-64::openjpeg-2.3.1-hcdae239_3
>> openmp conda-forge/osx-64::openmp-8.0.1-0
>> openssl conda-forge/osx-64::openssl-1.1.1e-h0b31af3_0
>> pcre conda-forge/osx-64::pcre-8.44-h4a8c4bd_0
>> pip conda-forge/noarch::pip-20.0.2-py_2
>> pixman conda-forge/osx-64::pixman-0.38.0-h01d97ff_1003
>> poppler conda-forge/osx-64::poppler-0.67.0-h16886b5_8
>> poppler-data conda-forge/noarch::poppler-data-0.4.9-1
>> postgresql conda-forge/osx-64::postgresql-12.2-h16d8c28_0
>> proj conda-forge/osx-64::proj-6.3.1-h773a61f_1
>> python conda-forge/osx-64::python-3.8.2-hdc38147_4_cpython
>> python_abi conda-forge/osx-64::python_abi-3.8-1_cp38
>> readline conda-forge/osx-64::readline-8.0-hcfe32e1_0
>> setuptools conda-forge/osx-64::setuptools-46.0.0-py38h32f6830_2
>> sqlite conda-forge/osx-64::sqlite-3.30.1-h93121df_0
>> tbb conda-forge/osx-64::tbb-2018.0.5-h2d50403_0
>> tiledb conda-forge/osx-64::tiledb-1.7.0-hd5e958f_2
>> tk conda-forge/osx-64::tk-8.6.10-hbbe82c9_0
>> tzcode conda-forge/osx-64::tzcode-2019a-h01d97ff_1002
>> udunits2 conda-forge/osx-64::udunits2-2.2.27.6-h776b7f1_1001
>> wheel conda-forge/noarch::wheel-0.34.2-py_1
>> xerces-c conda-forge/osx-64::xerces-c-3.2.2-h8f8adb3_1004
>> xz conda-forge/osx-64::xz-5.2.4-h1de35cc_1001
>> zlib conda-forge/osx-64::zlib-1.2.11-h0b31af3_1006
>> zstd conda-forge/osx-64::zstd-1.4.4-he7fca8b_1
>>
>>
>> Proceed ([y]/n)? y
>>
>>
>> Downloading and Extracting Packages
>> libblas-3.8.0 | 10 KB | ##################################### | 100%
>> freetype-2.10.0 | 881 KB | ##################################### | 100%
>> libspatialite-4.3.0a | 3.1 MB | ##################################### | 100%
>> icu-64.2 | 12.3 MB | ##################################### | 100%
>> pcre-8.44 | 222 KB | ##################################### | 100%
>> python_abi-3.8 | 4 KB | ##################################### | 100%
>> libnetcdf-4.7.3 | 1.2 MB | ##################################### | 100%
>> giflib-5.2.1 | 71 KB | ##################################### | 100%
>> tbb-2018.0.5 | 150 KB | ##################################### | 100%
>> bzip2-1.0.8 | 152 KB | ##################################### | 100%
>> ncl-6.6.2 | 59.8 MB | ##################################### | 100%
>> openmp-8.0.1 | 8 KB | ##################################### | 100%
>> python-3.8.2 | 25.1 MB | ##################################### | 100%
>> fontconfig-2.13.1 | 270 KB | ##################################### | 100%
>> libwebp-base-1.1.0 | 750 KB | ##################################### | 100%
>> proj-6.3.1 | 10.3 MB | ##################################### | 100%
>> pip-20.0.2 | 1.0 MB | ##################################### | 100%
>> geotiff-1.5.1 | 125 KB | ##################################### | 100%
>> llvm-openmp-8.0.1 | 253 KB | ##################################### | 100%
>> readline-8.0 | 415 KB | ##################################### | 100%
>> xz-5.2.4 | 268 KB | ##################################### | 100%
>> libpq-12.2 | 2.6 MB | ##################################### | 100%
>> tiledb-1.7.0 | 2.3 MB | ##################################### | 100%
>> libwebp-1.0.2 | 841 KB | ##################################### | 100%
>> libopenblas-0.3.7 | 8.2 MB | ##################################### | 100%
>> certifi-2019.11.28 | 149 KB | ##################################### | 100%
>> lz4-c-1.8.3 | 139 KB | ##################################### | 100%
>> poppler-0.67.0 | 1.6 MB | ##################################### | 100%
>> wheel-0.34.2 | 24 KB | ##################################### | 100%
>> libcxx-9.0.1 | 1011 KB | ##################################### | 100%
>> libffi-3.2.1 | 42 KB | ##################################### | 100%
>> hdfeos5-5.1.16 | 557 KB | ##################################### | 100%
>> libcurl-7.68.0 | 527 KB | ##################################### | 100%
>> cfitsio-3.470 | 1.4 MB | ##################################### | 100%
>> openjpeg-2.3.1 | 377 KB | ##################################### | 100%
>> setuptools-46.0.0 | 633 KB | ##################################### | 100%
>> libiconv-1.15 | 1.3 MB | ##################################### | 100%
>> openssl-1.1.1e | 1.9 MB | ##################################### | 100%
>> esmf-8.0.0 | 25.1 MB | ##################################### | 100%
>> cairo-1.16.0 | 1.3 MB | ##################################### | 100%
>> expat-2.2.9 | 126 KB | ##################################### | 100%
>> libgfortran-4.0.0 | 716 KB | ##################################### | 100%
>> sqlite-3.30.1 | 2.5 MB | ##################################### | 100%
>> postgresql-12.2 | 4.5 MB | ##################################### | 100%
>> libpng-1.6.37 | 298 KB | ##################################### | 100%
>> gettext-0.19.8.1 | 3.3 MB | ##################################### | 100%
>> libtiff-4.1.0 | 613 KB | ##################################### | 100%
>> freexl-1.0.5 | 42 KB | ##################################### | 100%
>> zstd-1.4.4 | 1.0 MB | ##################################### | 100%
>> kealib-1.4.12 | 161 KB | ##################################### | 100%
>> pixman-0.38.0 | 611 KB | ##################################### | 100%
>> json-c-0.13.1 | 64 KB | ##################################### | 100%
>> jpeg-9c | 237 KB | ##################################### | 100%
>> libxml2-2.9.10 | 1.2 MB | ##################################### | 100%
>> zlib-1.2.11 | 101 KB | ##################################### | 100%
>> boost-cpp-1.72.0 | 19.1 MB | ##################################### | 100%
>> libedit-3.1.20170329 | 152 KB | ##################################### | 100%
>> hdf5-1.10.5 | 3.0 MB | ##################################### | 100%
>> xerces-c-3.2.2 | 1.5 MB | ##################################### | 100%
>> ncurses-6.1 | 1.3 MB | ##################################### | 100%
>> libkml-1.3.0 | 482 KB | ##################################### | 100%
>> tk-8.6.10 | 3.3 MB | ##################################### | 100%
>> geos-3.8.1 | 901 KB | ##################################### | 100%
>> curl-7.68.0 | 130 KB | ##################################### | 100%
>> libgdal-3.0.4 | 17.2 MB | ##################################### | 100%
>> poppler-data-0.4.9 | 3.4 MB | ##################################### | 100%
>> jasper-1.900.1 | 283 KB | ##################################### | 100%
>> krb5-1.16.4 | 1.1 MB | ##################################### | 100%
>> libssh2-1.8.2 | 221 KB | ##################################### | 100%
>> hdfeos2-2.20 | 236 KB | ##################################### | 100%
>> tzcode-2019a | 429 KB | ##################################### | 100%
>> hdf4-4.2.13 | 882 KB | ##################################### | 100%
>> ca-certificates-2019 | 145 KB | ##################################### | 100%
>> libcblas-3.8.0 | 10 KB | ##################################### | 100%
>> netcdf-fortran-4.5.2 | 697 KB | ##################################### | 100%
>> libdap4-3.20.4 | 12.7 MB | ##################################### | 100%
>> glib-2.58.3 | 3.1 MB | ##################################### | 100%
>> udunits2-2.2.27.6 | 157 KB | ##################################### | 100%
>> gsl-2.6 | 3.0 MB | ##################################### | 100%
>> Preparing transaction: done
>> Verifying transaction: done
>> Executing transaction: done
>> #
>> # To activate this environment, use
>> #
>> # $ conda activate ncl
>> #
>> # To deactivate an active environment, use
>> #
>> # $ conda deactivate
>> _______________________________________________
>> ncl-install mailing list
>> List instructions, subscriber options, unsubscribe:
>> http://mailman.ucar.edu/mailman/listinfo/ncl-install
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