[ncl-install] NCL install issue
Dave Allured - NOAA Affiliate
dave.allured at noaa.gov
Sun Apr 19 22:45:32 MDT 2020
I think that you may not have installed XQuartz properly. Please follow
the instructions under "Install XQuartz" on this page:
http://www.ncl.ucar.edu/Download/macosx.shtml
Make sure that after downloading the Xquartz.dmg file, you double click on
this file and complete the installation procedure. You may also need to
restart your Mac after the install procedure. Then retry the ncl test
command.
On Sun, Apr 19, 2020 at 9:02 PM Vanessa Vincente via ncl-install <
ncl-install at ucar.edu> wrote:
> Hello,
>
> I am trying to install NCL on my macOS High Sierra laptop and I am having
> issues with testing NCL.
>
> I have installed miniconda:
> conda -V returns "conda 4.8.3"
>
> I have created the conda environment and called it "ncl_stable"
>
> I am testing NCL, step 1:
> ncl -V returns "6.6.2"
>
> The issue I have is in step 2:
> ncl $NCARG_ROOT/lib/ncarg/nclex/gsun/gsun02n.ncl
>
> this returns...
>
> Copyright (C) 1995-2019 - All Rights Reserved
>
> University Corporation for Atmospheric Research
>
> NCAR Command Language Version 6.6.2
>
> The use of this software is governed by a License Agreement.
>
> See http://www.ncl.ucar.edu/ for more details.
>
> GKS ERROR NUMBER -208 ISSUED FROM SUBROUTINE GOPWK :
>
> --X driver error: DISPLAY environment variable not set
>
> GKS ERROR NUMBER 25 ISSUED FROM SUBROUTINE GESC :
>
> --SPECIFIED WORKSTATION IS NOT OPEN
>
> fatal:Workstation with PID#8 is not open
>
> fatal:Unable to open Workstation-Can't Create
>
> fatal:Unable to access object with id:-4
>
> fatal:_NhlCreate:Invalid Parent id #-4
>
> fatal:PID #-4 can't be found in NhlSetValues
>
> fatal:NhlDraw: Invalid Layer Id: -4
>
> fatal:Unable to update Workstation with PID#-4
>
> fatal:Unable to clear Workstation with PID#-4
>
> fatal:["Execute.c":8637]:Execute: Error occurred at or near line 2742 in
> file $NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl
>
>
> fatal:["Execute.c":8637]:Execute: Error occurred at or near line 10231 in
> file $NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl
>
>
> fatal:["Execute.c":8637]:Execute: Error occurred at or near line 20 in
> file
> /Users/Vanessa/miniconda3/envs/ncl_stable/lib/ncarg/nclex/gsun/gsun02n.ncl
>
>
> Below is the output requested from help page:
>
> (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ conda list -n ncl_stable
>
> # packages in environment at /Users/Vanessa/miniconda3/envs/ncl_stable:
>
> #
>
> # Name Version Build Channel
>
> boost-cpp 1.72.0 hdf9ef73_0 conda-forge
>
> bzip2 1.0.8 h0b31af3_2 conda-forge
>
> ca-certificates 2020.4.5.1 hecc5488_0 conda-forge
>
> cairo 1.16.0 hec6a9b0_1003 conda-forge
>
> certifi 2020.4.5.1 py38h32f6830_0 conda-forge
>
> cfitsio 3.470 h84d2f63_2 conda-forge
>
> curl 7.69.1 h2d98d24_0 conda-forge
>
> esmf 8.0.0 nompi_hee103b1_6 conda-forge
>
> expat 2.2.9 h4a8c4bd_2 conda-forge
>
> fontconfig 2.13.1 h6b1039f_1001 conda-forge
>
> freetype 2.10.1 h8da9a1a_0 conda-forge
>
> freexl 1.0.5 h1de35cc_1002 conda-forge
>
> geos 3.8.1 h4a8c4bd_0 conda-forge
>
> geotiff 1.5.1 hd8796ba_10 conda-forge
>
> gettext 0.19.8.1 h46ab8bc_1002 conda-forge
>
> giflib 5.2.1 h0b31af3_2 conda-forge
>
> glib 2.64.2 h577aef8_0 conda-forge
>
> gsl 2.6 ha2d443c_0 conda-forge
>
> hdf4 4.2.13 h84186c3_1003 conda-forge
>
> hdf5 1.10.5 nompi_h3e39495_1104
> conda-forge
>
> hdfeos2 2.20 h207910d_1000 conda-forge
>
> hdfeos5 5.1.16 h60f75e3_5 conda-forge
>
> icu 64.2 h6de7cb9_1 conda-forge
>
> jasper 1.900.1 h636a363_1006 conda-forge
>
> jpeg 9c h1de35cc_1001 conda-forge
>
> json-c 0.13.1 h1de35cc_1001 conda-forge
>
> kealib 1.4.13 h2324030_0 conda-forge
>
> krb5 1.17.1 h1752a42_0 conda-forge
>
> libblas 3.8.0 14_openblas conda-forge
>
> libcblas 3.8.0 14_openblas conda-forge
>
> libcurl 7.69.1 hc0b9707_0 conda-forge
>
> libcxx 10.0.0 0 conda-forge
>
> libdap4 3.20.4 habf5908_0 conda-forge
>
> libedit 3.1.20170329 hcfe32e1_1001 conda-forge
>
> libffi 3.2.1 h4a8c4bd_1007 conda-forge
>
> libgdal 3.0.4 ha92c1e4_6 conda-forge
>
> libgfortran 4.0.0 2 conda-forge
>
> libiconv 1.15 h0b31af3_1006 conda-forge
>
> libkml 1.3.0 h169b8f9_1011 conda-forge
>
> libnetcdf 4.7.4 nompi_he461dc0_101
> conda-forge
>
> libopenblas 0.3.7 h3d69b6c_4 conda-forge
>
> libpng 1.6.37 hbbe82c9_1 conda-forge
>
> libpq 12.2 h489d428_1 conda-forge
>
> libspatialite 4.3.0a h658e6c1_1038 conda-forge
>
> libssh2 1.8.2 hcdc9a53_2 conda-forge
>
> libtiff 4.1.0 h2ae36a8_6 conda-forge
>
> libwebp-base 1.1.0 h0b31af3_3 conda-forge
>
> libxml2 2.9.10 h53d96d6_0 conda-forge
>
> llvm-openmp 8.0.1 h770b8ee_0 conda-forge
>
> lz4-c 1.9.2 h4a8c4bd_0 conda-forge
>
> ncl 6.6.2 h0197cca_20 conda-forge
>
> ncurses 6.1 h0a44026_1002 conda-forge
>
> netcdf-fortran 4.5.2 nompi_h0361502_104
> conda-forge
>
> openjpeg 2.3.1 h254dc36_3 conda-forge
>
> openmp 8.0.1 0 conda-forge
>
> openssl 1.1.1f h0b31af3_0 conda-forge
>
> pcre 8.44 h4a8c4bd_0 conda-forge
>
> pip 20.0.2 py_2 conda-forge
>
> pixman 0.38.0 h01d97ff_1003 conda-forge
>
> poppler 0.67.0 h16886b5_8 conda-forge
>
> poppler-data 0.4.9 1 conda-forge
>
> postgresql 12.2 h62ab893_1 conda-forge
>
> proj 7.0.0 hbce2d5c_3 conda-forge
>
> python 3.8.2 hd5f0129_6_cpython
> conda-forge
>
> python_abi 3.8 1_cp38 conda-forge
>
> readline 8.0 hcfe32e1_0 conda-forge
>
> setuptools 46.1.3 py38h32f6830_0 conda-forge
>
> sqlite 3.30.1 h93121df_0 conda-forge
>
> tbb 2018.0.5 h2d50403_0 conda-forge
>
> tiledb 1.7.7 h84aa2a7_1 conda-forge
>
> tk 8.6.10 hbbe82c9_0 conda-forge
>
> tzcode 2019a h01d97ff_1002 conda-forge
>
> udunits2 2.2.27.6 h776b7f1_1001 conda-forge
>
> wheel 0.34.2 py_1 conda-forge
>
> xerces-c 3.2.2 h8f8adb3_1004 conda-forge
>
> xz 5.2.5 h0b31af3_0 conda-forge
>
> zlib 1.2.11 h0b31af3_1006 conda-forge
>
> zstd 1.4.4 h4b3e974_3 conda-forge
>
> (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ conda --version
>
> conda 4.8.3
>
> (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ which ncl
>
> /Users/Vanessa/miniconda3/envs/ncl_stable/bin/ncl
>
> (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ ncl -V
>
> 6.6.2
>
> (ncl_stable) Vanessas-MacBook-Pro:~ Vanessa$ env | grep NCARG
>
> OLD_NCARG_ROOT=/Users/Vanessa/miniconda3/envs/ncl_stable/bin/ncl
>
> NCARG_ROOT=/Users/Vanessa/miniconda3/envs/ncl_stable
>
> Can you please help me with running the tests for NCL and getting it to
> work properly?
>
> Many thanks in advance for your help,
> Vanessa
>
>
> --
> Vanessa Vincente
> Associate Scientist
> The COMET® Program
> University Corporation for Atmospheric Research
>
> *My working hours may differ from your own. Please do not feel obligated
> to reply outside of standard business hours.*
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