[ncl-install] NCL Conda Install Problem
Kevin Hallock
hallock at ucar.edu
Tue Jul 16 09:28:09 MDT 2019
Hi Justin,
Based on the error message, it looks like you may need to install XQuartz (an X11 window server for Mac) on your system: https://www.xquartz.org/ <https://www.xquartz.org/>
Please let us know if installing XQuartz doesn’t solve the problem for you.
I hope this helps!
Kevin
> On Jul 15, 2019, at 6:14 PM, Justin Richling via ncl-install <ncl-install at ucar.edu> wrote:
>
> Hi team,
>
> I'm trying to install NCL via Conda
>
> I've tried installing in a conda env similar to your instructions. However, when I try to check the ncl version I get an error message:
>
> $ ncl -V
> dyld: Library not loaded: /opt/X11/lib/libcairo.2.dylib
> Referenced from: /Users/chowdahead/miniconda3/envs/ncl_stable/bin/ncl
> Reason: image not found
> Abort trap: 6
>
> System info:
>
> $ conda list -n ncl_stable
> # packages in environment at /Users/chowdahead/miniconda3/envs/ncl_stable:
> #
> # Name Version Build Channel
> boost-cpp 1.70.0 hd59e818_0 conda-forge
> bzip2 1.0.8 h01d97ff_0 conda-forge
> ca-certificates 2019.6.16 hecc5488_0 conda-forge
> cairo 1.16.0 h0ab9d94_1001 conda-forge
> cfitsio 3.470 h389770f_1 conda-forge
> curl 7.64.1 h22ea746_0 conda-forge
> esmf 7.1.0 h3ab5097_1006 conda-forge
> expat 2.2.5 h6de7cb9_1003 conda-forge
> fontconfig 2.13.1 h1027ab8_1000 conda-forge
> freetype 2.10.0 h24853df_0 conda-forge
> freexl 1.0.5 h1de35cc_1002 conda-forge
> geos 3.7.2 h6de7cb9_1 conda-forge
> geotiff 1.5.1 h83de174_2 conda-forge
> gettext 0.19.8.1 h46ab8bc_1002 conda-forge
> giflib 5.1.7 h01d97ff_1 conda-forge
> glib 2.58.3 h9d45998_1002 conda-forge
> gsl 2.5 ha2d443c_0 conda-forge
> hdf4 4.2.13 hf3c6af0_1002 conda-forge
> hdf5 1.10.5 nompi_h0cbb7df_1100 conda-forge
> hdfeos2 2.20 h207910d_1000 conda-forge
> hdfeos5 5.1.16 h60f75e3_5 conda-forge
> icu 58.2 h0a44026_1000 conda-forge
> jasper 1.900.1 h636a363_1006 conda-forge
> jpeg 9c h1de35cc_1001 conda-forge
> json-c 0.13.1 h1de35cc_1001 conda-forge
> kealib 1.4.10 h6659575_1005 conda-forge
> krb5 1.16.3 hcfa6398_1001 conda-forge
> libblas 3.8.0 10_openblas conda-forge
> libcblas 3.8.0 10_openblas conda-forge
> libcurl 7.64.1 h16faf7d_0 conda-forge
> libcxx 8.0.0 4 conda-forge
> libcxxabi 8.0.0 4 conda-forge
> libdap4 3.19.1 hae55d67_1000 conda-forge
> libedit 3.1.20170329 hcfe32e1_1001 conda-forge
> libffi 3.2.1 h6de7cb9_1006 conda-forge
> libgcc 4.8.5 hdbeacc1_10 conda-forge
> libgdal 2.4.2 h8aadb83_2 conda-forge
> libgfortran 3.0.1 0 conda-forge
> libiconv 1.15 h01d97ff_1005 conda-forge
> libkml 1.3.0 hed7d534_1010 conda-forge
> libnetcdf 4.6.2 h1a02027_1002 conda-forge
> libopenblas 0.3.6 hd44dcd8_4 conda-forge
> libpng 1.6.37 h2573ce8_0 conda-forge
> libpq 11.4 h756f0eb_1 conda-forge
> libspatialite 4.3.0a he369b6e_1029 conda-forge
> libssh2 1.8.2 hcdc9a53_2 conda-forge
> libtiff 4.0.10 hd08fb8f_1003 conda-forge
> libxml2 2.9.9 hd80cff7_1 conda-forge
> llvm-openmp 8.0.0 h770b8ee_0 conda-forge
> lz4-c 1.8.3 h6de7cb9_1001 conda-forge
> mpi 1.0 mpich conda-forge
> mpich 3.2.1 ha90c164_1013 conda-forge
> ncl 6.6.2 h202f54f_6 conda-forge
> ncurses 6.1 h0a44026_1002 conda-forge
> netcdf-fortran 4.4.5 hdf19b3b_1001 conda-forge
> openblas 0.3.6 hd44dcd8_4 conda-forge
> openjpeg 2.3.1 hc1feee7_0 conda-forge
> openmp 8.0.0 0 conda-forge
> openssl 1.1.1c h01d97ff_0 conda-forge
> pcre 8.41 h0a44026_1003 conda-forge
> pixman 0.38.0 h01d97ff_1003 conda-forge
> poppler 0.67.0 hb974355_6 conda-forge
> poppler-data 0.4.9 1 conda-forge
> postgresql 11.4 h25afefd_1 conda-forge
> proj4 6.1.0 h2cc77ee_2 conda-forge
> readline 8.0 hcfe32e1_0 conda-forge
> sqlite 3.29.0 hb7d70f7_0 conda-forge
> tk 8.6.9 h2573ce8_1002 conda-forge
> tzcode 2019a h01d97ff_1002 conda-forge
> udunits2 2.2.27.6 h776b7f1_1001 conda-forge
> xerces-c 3.2.2 h4db8090_1002 conda-forge
> xz 5.2.4 h1de35cc_1001 conda-forge
> zlib 1.2.11 h01d97ff_1005 conda-forge
> zstd 1.4.0 ha9f0a20_0 conda-forge
>
> $ conda --version
> conda 4.7.5
>
> $ which ncl
> /Users/chowdahead/miniconda3/envs/ncl_stable/bin/ncl
>
> $ ncl -V
> dyld: Library not loaded: /opt/X11/lib/libcairo.2.dylib
> Referenced from: /Users/chowdahead/miniconda3/envs/ncl_stable/bin/ncl
> Reason: image not found
> Abort trap: 6
>
> $ env | grep NCARG
> NCARG_ROOT=/Users/chowdahead/miniconda3/envs/ncl_stable
>
> Any insight in to what is the underlying issue?
> I've tried running
> $ conda update --all -c conda-forge
> and checking again but same problem.
>
> I'd be happy to provide any further system info if needed.
>
> Thanks for your time,
> Justin
>
>
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