[ncl-install] NCL Conda Install Problem

Justin Richling justin.richling at gmail.com
Mon Jul 15 18:14:05 MDT 2019


Hi team,

I'm trying to install NCL via Conda

I've tried installing in a conda env similar to your instructions. However,
when I try to check the ncl version I get an error message:

$ ncl -V

dyld: Library not loaded: /opt/X11/lib/libcairo.2.dylib

  Referenced from: /Users/chowdahead/miniconda3/envs/ncl_stable/bin/ncl

  Reason: image not found

Abort trap: 6

System info:

$ conda list -n ncl_stable

# packages in environment at /Users/chowdahead/miniconda3/envs/ncl_stable:

#

# Name                    Version                   Build  Channel

boost-cpp                 1.70.0               hd59e818_0    conda-forge

bzip2                     1.0.8                h01d97ff_0    conda-forge

ca-certificates           2019.6.16            hecc5488_0    conda-forge

cairo                     1.16.0            h0ab9d94_1001    conda-forge

cfitsio                   3.470                h389770f_1    conda-forge

curl                      7.64.1               h22ea746_0    conda-forge

esmf                      7.1.0             h3ab5097_1006    conda-forge

expat                     2.2.5             h6de7cb9_1003    conda-forge

fontconfig                2.13.1            h1027ab8_1000    conda-forge

freetype                  2.10.0               h24853df_0    conda-forge

freexl                    1.0.5             h1de35cc_1002    conda-forge

geos                      3.7.2                h6de7cb9_1    conda-forge

geotiff                   1.5.1                h83de174_2    conda-forge

gettext                   0.19.8.1          h46ab8bc_1002    conda-forge

giflib                    5.1.7                h01d97ff_1    conda-forge

glib                      2.58.3            h9d45998_1002    conda-forge

gsl                       2.5                  ha2d443c_0    conda-forge

hdf4                      4.2.13            hf3c6af0_1002    conda-forge

hdf5                      1.10.5          nompi_h0cbb7df_1100    conda-forge

hdfeos2                   2.20              h207910d_1000    conda-forge

hdfeos5                   5.1.16               h60f75e3_5    conda-forge

icu                       58.2              h0a44026_1000    conda-forge

jasper                    1.900.1           h636a363_1006    conda-forge

jpeg                      9c                h1de35cc_1001    conda-forge

json-c                    0.13.1            h1de35cc_1001    conda-forge

kealib                    1.4.10            h6659575_1005    conda-forge

krb5                      1.16.3            hcfa6398_1001    conda-forge

libblas                   3.8.0               10_openblas    conda-forge

libcblas                  3.8.0               10_openblas    conda-forge

libcurl                   7.64.1               h16faf7d_0    conda-forge

libcxx                    8.0.0                         4    conda-forge

libcxxabi                 8.0.0                         4    conda-forge

libdap4                   3.19.1            hae55d67_1000    conda-forge

libedit                   3.1.20170329      hcfe32e1_1001    conda-forge

libffi                    3.2.1             h6de7cb9_1006    conda-forge

libgcc                    4.8.5               hdbeacc1_10    conda-forge

libgdal                   2.4.2                h8aadb83_2    conda-forge

libgfortran               3.0.1                         0    conda-forge

libiconv                  1.15              h01d97ff_1005    conda-forge

libkml                    1.3.0             hed7d534_1010    conda-forge

libnetcdf                 4.6.2             h1a02027_1002    conda-forge

libopenblas               0.3.6                hd44dcd8_4    conda-forge

libpng                    1.6.37               h2573ce8_0    conda-forge

libpq                     11.4                 h756f0eb_1    conda-forge

libspatialite             4.3.0a            he369b6e_1029    conda-forge

libssh2                   1.8.2                hcdc9a53_2    conda-forge

libtiff                   4.0.10            hd08fb8f_1003    conda-forge

libxml2                   2.9.9                hd80cff7_1    conda-forge

llvm-openmp               8.0.0                h770b8ee_0    conda-forge

lz4-c                     1.8.3             h6de7cb9_1001    conda-forge

mpi                       1.0                       mpich    conda-forge

mpich                     3.2.1             ha90c164_1013    conda-forge

ncl                       6.6.2                h202f54f_6    conda-forge

ncurses                   6.1               h0a44026_1002    conda-forge

netcdf-fortran            4.4.5             hdf19b3b_1001    conda-forge

openblas                  0.3.6                hd44dcd8_4    conda-forge

openjpeg                  2.3.1                hc1feee7_0    conda-forge

openmp                    8.0.0                         0    conda-forge

openssl                   1.1.1c               h01d97ff_0    conda-forge

pcre                      8.41              h0a44026_1003    conda-forge

pixman                    0.38.0            h01d97ff_1003    conda-forge

poppler                   0.67.0               hb974355_6    conda-forge

poppler-data              0.4.9                         1    conda-forge

postgresql                11.4                 h25afefd_1    conda-forge

proj4                     6.1.0                h2cc77ee_2    conda-forge

readline                  8.0                  hcfe32e1_0    conda-forge

sqlite                    3.29.0               hb7d70f7_0    conda-forge

tk                        8.6.9             h2573ce8_1002    conda-forge

tzcode                    2019a             h01d97ff_1002    conda-forge

udunits2                  2.2.27.6          h776b7f1_1001    conda-forge

xerces-c                  3.2.2             h4db8090_1002    conda-forge

xz                        5.2.4             h1de35cc_1001    conda-forge

zlib                      1.2.11            h01d97ff_1005    conda-forge

zstd                      1.4.0                ha9f0a20_0    conda-forge

$ conda --version

conda 4.7.5

$ which ncl

/Users/chowdahead/miniconda3/envs/ncl_stable/bin/ncl

$ ncl -V

dyld: Library not loaded: /opt/X11/lib/libcairo.2.dylib

  Referenced from: /Users/chowdahead/miniconda3/envs/ncl_stable/bin/ncl

  Reason: image not found

Abort trap: 6

$ env  | grep NCARG

NCARG_ROOT=/Users/chowdahead/miniconda3/envs/ncl_stable

Any insight in to what is the underlying issue?
I've tried running

$ conda update --all -c conda-forge
and checking again but same problem.

I'd be happy to provide any further system info if needed.

Thanks for your time,
Justin
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