[ncl-install] error: conda installed NCL reading NetCDF-4
Wenshan Wang
wenshanw at uci.edu
Tue Apr 2 12:31:51 MDT 2019
Thank you, Dave!
It seems libnetcdf 4.6.3 hasn't rolled over to conda yet.
I will do an update later.
Best,
Wenshan
------------------------------------------------------------------------------
Post-doctoral Scholar
Zender Research Group
Department of Earth System Science
University of California, Irvine
https://sites.google.com/a/uci.edu/wenshanwang/
On Thu, Mar 28, 2019 at 5:52 PM Dave Allured - NOAA Affiliate <
dave.allured at noaa.gov> wrote:
> Wenshan,
>
> This is a known bug in netcdf 4.6.2. It is tagged as fixed in the latest
> netcdf version. Try updating your installed netcdf.
>
> A comment in the original bug report implies that these messages are
> harmless and can be ignored:
>
> https://github.com/Unidata/netcdf-c/issues/1207
>
> --Dave
>
>
> On Thu, Mar 28, 2019 at 6:14 PM Wenshan Wang via ncl-install <
> ncl-install at ucar.edu> wrote:
>
>> Hi ncl-install team,
>>
>> I installed NCL in a clean conda environment but it sends out really long
>> error msg reading NetCDF-4 files:
>> NC4_open: path /data/wenshanw/merra2/netcdf/rdn/ant_box2/MERRA2_300.tavg1
>> _2d_rad_Nx.20040624.SUB.nc mode 4096 params 0
>> HDF5 error messages turned on.
>> ...
>> ERROR: Invalid _NCProperties attribute
>>
>> Do you have any ideas what went wrong?
>> No such errors using other software on the same data file.
>>
>> Thank you!
>>
>> $ conda create -n *ncl_stable* -c conda-forge ncl
>> ...
>> # packages in environment at /Users/wenshanw/anaconda2/envs/ncl_stable:
>> #
>> # Name Version Build Channel
>> boost-cpp 1.68.0 h6f8c590_1000 conda-forge
>> bzip2 1.0.6 h1de35cc_1002 conda-forge
>> ca-certificates 2019.3.9 hecc5488_0 conda-forge
>> cairo 1.16.0 h9247486_1000 conda-forge
>> curl 7.64.1 h22ea746_0 conda-forge
>> esmf 7.1.0 h5f93626_1004 conda-forge
>> expat 2.2.5 h0a44026_1002 conda-forge
>> fontconfig 2.13.1 h1027ab8_1000 conda-forge
>> freetype 2.10.0 h24853df_0 conda-forge
>> freexl 1.0.5 h1de35cc_1002 conda-forge
>> geos 3.7.1 h0a44026_1000 conda-forge
>> geotiff 1.4.3 hce09ea4_1000 conda-forge
>> gettext 0.19.8.1 h46ab8bc_1002 conda-forge
>> giflib 5.1.7 h01d97ff_1 conda-forge
>> glib 2.58.3 h2836805_1001 conda-forge
>> gsl 2.4 ha2d443c_1005 conda-forge
>> hdf4 4.2.13 hf3c6af0_1002 conda-forge
>> hdf5 1.10.4 nompi_h0cbb7df_1106
>> conda-forge
>> hdfeos2 2.20 h207910d_1000 conda-forge
>> hdfeos5 5.1.16 he536a34_4 conda-forge
>> icu 58.2 h0a44026_1000 conda-forge
>> jasper 1.900.1 h636a363_1006 conda-forge
>> jpeg 9c h1de35cc_1001 conda-forge
>> json-c 0.13.1 h1de35cc_1001 conda-forge
>> kealib 1.4.10 hecf890f_1003 conda-forge
>> krb5 1.16.3 hcfa6398_1001 conda-forge
>> libblas 3.8.0 4_openblas conda-forge
>> libcblas 3.8.0 4_openblas conda-forge
>> libcurl 7.64.1 h16faf7d_0 conda-forge
>> libcxx 4.0.1 hcfea43d_1
>> libcxxabi 4.0.1 hcfea43d_1
>> libdap4 3.19.1 hae55d67_1000 conda-forge
>> libedit 3.1.20170329 hcfe32e1_1001 conda-forge
>> libffi 3.2.1 h6de7cb9_1006 conda-forge
>> libgdal 2.4.1 h16bfee5_0 conda-forge
>> libgfortran 3.0.1 0 conda-forge
>> libiconv 1.15 h01d97ff_1005 conda-forge
>> libkml 1.3.0 h71ee1b2_1009 conda-forge
>> libnetcdf 4.6.2 h6b88ef6_1001 conda-forge
>> libpng 1.6.36 ha441bb4_1000 conda-forge
>> libpq 11.2 h29c6f28_0 conda-forge
>> libspatialite 4.3.0a h0cd9627_1026 conda-forge
>> libssh2 1.8.2 hcdc9a53_2 conda-forge
>> libtiff 4.0.10 h79f4b77_1001 conda-forge
>> libxml2 2.9.8 hf14e9c8_1005 conda-forge
>> llvm-meta 7.0.0 0 conda-forge
>> mpi 1.0 mpich conda-forge
>> mpich 3.2.1 h71abe9c_1008 conda-forge
>> ncl 6.6.2 h2f2bd2c_1 conda-forge
>> ncurses 6.1 h0a44026_1002 conda-forge
>> netcdf-fortran 4.4.5 h5ce9b53_1000 conda-forge
>> openblas 0.3.5 h436c29b_1001 conda-forge
>> openjpeg 2.3.0 h3bf0609_1003 conda-forge
>> openmp 7.0.0 h2d50403_0 conda-forge
>> openssl 1.1.1b h01d97ff_2 conda-forge
>> pcre 8.41 h0a44026_1003 conda-forge
>> pixman 0.34.0 h1de35cc_1003 conda-forge
>> poppler 0.67.0 hb974355_6 conda-forge
>> poppler-data 0.4.9 1 conda-forge
>> postgresql 11.2 h16efa30_0 conda-forge
>> proj4 5.2.0 h1de35cc_1001 conda-forge
>> readline 7.0 hcfe32e1_1001 conda-forge
>> sqlite 3.26.0 h1765d9f_1001 conda-forge
>> tk 8.6.9 ha441bb4_1001 conda-forge
>> tzcode 2018g h1de35cc_1001 conda-forge
>> udunits2 2.2.27.6 h776b7f1_1001 conda-forge
>> xerces-c 3.2.2 h44e365a_1001 conda-forge
>> xz 5.2.4 h1de35cc_1001 conda-forge
>> zlib 1.2.11 h1de35cc_1004 conda-forge
>>
>> conda 4.6.8
>>
>> /Users/wenshanw/anaconda2/envs/ncl_stable/bin/ncl
>>
>> ncl 6.6.2
>>
>> $ env | grep NCARG
>> NCARG_ROOT=/Users/wenshanw/anaconda2/envs/ncl_stable
>>
>> Best,
>> Wenshan
>>
>
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