<div dir="ltr"><div>Thank you, Dave!</div><div><br></div><div>It seems libnetcdf 4.6.3 hasn't rolled over to conda yet.</div><div>I will do an update later. </div><br clear="all"><div><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div><div><div>Best,<br></div>Wenshan<br>------------------------------------------------------------------------------<br></div>Post-doctoral Scholar</div><div>Zender Research Group</div>Department of Earth System Science<br></div>University of California, Irvine<br></div><div dir="ltr"><a href="https://sites.google.com/a/uci.edu/wenshanwang/" target="_blank">https://sites.google.com/a/uci.edu/wenshanwang/</a><br></div></div></div></div></div></div></div></div></div><br></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, Mar 28, 2019 at 5:52 PM Dave Allured - NOAA Affiliate <<a href="mailto:dave.allured@noaa.gov">dave.allured@noaa.gov</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div dir="ltr"><div>Wenshan,</div><div><br></div><div>This is a known bug in netcdf 4.6.2. It is tagged as fixed in the latest netcdf version. Try updating your installed netcdf.</div><div><br></div><div>A comment in the original bug report implies that these messages are harmless and can be ignored:</div><div><br></div><div><a href="https://github.com/Unidata/netcdf-c/issues/1207" target="_blank">https://github.com/Unidata/netcdf-c/issues/1207</a><br></div><div><br></div><div>--Dave</div><div><br></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, Mar 28, 2019 at 6:14 PM Wenshan Wang via ncl-install <<a href="mailto:ncl-install@ucar.edu" target="_blank">ncl-install@ucar.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div>Hi ncl-install team,</div><div><br></div><div>I installed NCL in a clean conda environment but it sends out really long error msg reading NetCDF-4 files:</div><div><div><font face="monospace, monospace">NC4_open: path /data/wenshanw/merra2/netcdf/rdn/ant_box2/MERRA2_300.tavg1</font></div><div><font face="monospace, monospace">_<a href="http://2d_rad_Nx.20040624.SUB.nc" target="_blank">2d_rad_Nx.20040624.SUB.nc</a> mode 4096 params 0</font></div><div><font face="monospace, monospace"> HDF5 error messages turned on.</font></div></div><div><font face="monospace, monospace">...</font></div><div><font face="monospace, monospace">ERROR: Invalid _NCProperties attribute</font><br></div><div><br></div><div>Do you have any ideas what went wrong?</div><div>No such errors using other software on the same data file.</div><div><br></div><div>Thank you!</div><div><br></div><div>$ <span style="color:rgb(0,0,0);font-family:courier;font-size:13.3333px">conda create -n </span><i style="color:rgb(0,0,0);font-family:courier;font-size:13.3333px;margin:0px;padding:0px">ncl_stable</i><span style="color:rgb(0,0,0);font-family:courier;font-size:13.3333px"> -c conda-forge ncl</span></div><div><span style="color:rgb(0,0,0);font-family:courier;font-size:13.3333px">...</span></div><div><div><font color="#000000" face="courier"><span style="font-size:13.3333px"># packages in environment at /Users/wenshanw/anaconda2/envs/ncl_stable:</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">#</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px"># Name Version Build Channel</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">boost-cpp 1.68.0 h6f8c590_1000 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">bzip2 1.0.6 h1de35cc_1002 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">ca-certificates 2019.3.9 hecc5488_0 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">cairo 1.16.0 h9247486_1000 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">curl 7.64.1 h22ea746_0 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">esmf 7.1.0 h5f93626_1004 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">expat 2.2.5 h0a44026_1002 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">fontconfig 2.13.1 h1027ab8_1000 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">freetype 2.10.0 h24853df_0 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">freexl 1.0.5 h1de35cc_1002 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">geos 3.7.1 h0a44026_1000 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">geotiff 1.4.3 hce09ea4_1000 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">gettext 0.19.8.1 h46ab8bc_1002 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">giflib 5.1.7 h01d97ff_1 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">glib 2.58.3 h2836805_1001 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">gsl 2.4 ha2d443c_1005 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">hdf4 4.2.13 hf3c6af0_1002 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">hdf5 1.10.4 nompi_h0cbb7df_1106 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">hdfeos2 2.20 h207910d_1000 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">hdfeos5 5.1.16 he536a34_4 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">icu 58.2 h0a44026_1000 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">jasper 1.900.1 h636a363_1006 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">jpeg 9c h1de35cc_1001 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">json-c 0.13.1 h1de35cc_1001 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">kealib 1.4.10 hecf890f_1003 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">krb5 1.16.3 hcfa6398_1001 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libblas 3.8.0 4_openblas conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libcblas 3.8.0 4_openblas conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libcurl 7.64.1 h16faf7d_0 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libcxx 4.0.1 hcfea43d_1</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libcxxabi 4.0.1 hcfea43d_1</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libdap4 3.19.1 hae55d67_1000 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libedit 3.1.20170329 hcfe32e1_1001 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libffi 3.2.1 h6de7cb9_1006 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libgdal 2.4.1 h16bfee5_0 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libgfortran 3.0.1 0 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libiconv 1.15 h01d97ff_1005 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libkml 1.3.0 h71ee1b2_1009 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libnetcdf 4.6.2 h6b88ef6_1001 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libpng 1.6.36 ha441bb4_1000 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libpq 11.2 h29c6f28_0 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libspatialite 4.3.0a h0cd9627_1026 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libssh2 1.8.2 hcdc9a53_2 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libtiff 4.0.10 h79f4b77_1001 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">libxml2 2.9.8 hf14e9c8_1005 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">llvm-meta 7.0.0 0 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">mpi 1.0 mpich conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">mpich 3.2.1 h71abe9c_1008 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">ncl 6.6.2 h2f2bd2c_1 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">ncurses 6.1 h0a44026_1002 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">netcdf-fortran 4.4.5 h5ce9b53_1000 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">openblas 0.3.5 h436c29b_1001 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">openjpeg 2.3.0 h3bf0609_1003 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">openmp 7.0.0 h2d50403_0 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">openssl 1.1.1b h01d97ff_2 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">pcre 8.41 h0a44026_1003 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">pixman 0.34.0 h1de35cc_1003 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">poppler 0.67.0 hb974355_6 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">poppler-data 0.4.9 1 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">postgresql 11.2 h16efa30_0 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">proj4 5.2.0 h1de35cc_1001 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">readline 7.0 hcfe32e1_1001 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">sqlite 3.26.0 h1765d9f_1001 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">tk 8.6.9 ha441bb4_1001 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">tzcode 2018g h1de35cc_1001 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">udunits2 2.2.27.6 h776b7f1_1001 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">xerces-c 3.2.2 h44e365a_1001 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">xz 5.2.4 h1de35cc_1001 conda-forge</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">zlib 1.2.11 h1de35cc_1004 conda-forge</span></font></div></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px"><br></span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">conda 4.6.8</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px"><br></span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">/Users/wenshanw/anaconda2/envs/ncl_stable/bin/ncl</span><br></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px"><br></span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px">ncl 6.6.2</span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px"><br></span></font></div><div><font color="#000000" face="courier"><span style="font-size:13.3333px"><div>$ env | grep NCARG</div><div>NCARG_ROOT=/Users/wenshanw/anaconda2/envs/ncl_stable</div></span></font></div><div><br></div><div><div dir="ltr" class="gmail-m_-5339087940131956392gmail-m_-1967622605583571134gmail-m_-1083526963220287476gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div><div><div>Best,<br></div>Wenshan</div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></blockquote></div></div></div>
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