[Met_help] [rt.rap.ucar.edu #98380] History for METv9.1 error with imerg HDF5 data
John Halley Gotway via RT
met_help at ucar.edu
Tue Jan 26 11:10:54 MST 2021
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Hi!
I am currently trying to run pcp_combine in METv9.1 on mohawk with imerg
HDF5 data. I have a script that John wrote called sum_IMERG_V06_HDF5.py. I
have used a similar version of the script in the past using imerg NetCDF
data that worked fine with the most recent version of python.
I'm getting the following error:
Running pcp_combine for IMERG data
DEBUG 2: Since the "-field" command line option was not used, parsing the
command line arguments a list of files, each followed by a configuration
string.
DEBUG 2: Performing derivation command (sum) for 1 files.
DEBUG 1: Reading data (name="${SCRIPTS_PATH}/sum_IMERG_V06_HDF5.py
${OBS_PATH_APCP} IRprecipitation ${YYYYMMDD}${VHH_APCP} ${ACCUM_TIME}";)
from input file: PYTHON_NUMPY
Traceback (most recent call last):
File "/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py", line 7,
in <module>
import h5py
File "/usr/local/python3/lib/python3.7/site-packages/h5py/__init__.py",
line 34, in <module>
from . import version
File "/usr/local/python3/lib/python3.7/site-packages/h5py/version.py",
line 17, in <module>
from . import h5 as _h5
File "h5py/h5.pyx", line 1, in init h5py.h5
ImportError: /usr/local/python3/lib/python3.7/site-packages/h5py/
defs.cpython-37m-x86_64-linux-gnu.so: undefined symbol: H5Ovisit_by_name
WARNING:
WARNING: python_dataplane() -> an error occurred importing module
"/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5"
WARNING:
ERROR :
ERROR : get_field() -> can't get data plane from file "PYTHON_NUMPY"
ERROR :
I'm not sure if I'm not using the correct version of python or if there's
something else that is going wrong.
Thanks!
Brianne
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: METv9.1 error with imerg HDF5 data
From: John Halley Gotway
Time: Mon Jan 25 11:04:33 2021
Hi Brianne,
I see you're having a problem with a python embedding script in MET.
I'd
like to try to replicate this behavior to figure out what's going on.
Can you tell me the machine you're using, and if possible, send me
commands
I can copy/paste to demonstrate the error?
Thanks,
John Halley Gotway
On Mon, Jan 25, 2021 at 10:57 AM briannen at ucar.edu via RT
<met_help at ucar.edu>
wrote:
>
> Mon Jan 25 10:57:50 2021: Request 98380 was acted upon.
> Transaction: Ticket created by briannen at ucar.edu
> Queue: met_help
> Subject: METv9.1 error with imerg HDF5 data
> Owner: Nobody
> Requestors: briannen at ucar.edu
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380 >
>
>
> Hi!
>
> I am currently trying to run pcp_combine in METv9.1 on mohawk with
imerg
> HDF5 data. I have a script that John wrote called
sum_IMERG_V06_HDF5.py. I
> have used a similar version of the script in the past using imerg
NetCDF
> data that worked fine with the most recent version of python.
>
> I'm getting the following error:
> Running pcp_combine for IMERG data
> DEBUG 2: Since the "-field" command line option was not used,
parsing the
> command line arguments a list of files, each followed by a
configuration
> string.
> DEBUG 2: Performing derivation command (sum) for 1 files.
> DEBUG 1: Reading data (name="${SCRIPTS_PATH}/sum_IMERG_V06_HDF5.py
> ${OBS_PATH_APCP} IRprecipitation ${YYYYMMDD}${VHH_APCP}
${ACCUM_TIME}";)
> from input file: PYTHON_NUMPY
> Traceback (most recent call last):
> File "/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py",
line 7,
> in <module>
> import h5py
> File "/usr/local/python3/lib/python3.7/site-
packages/h5py/__init__.py",
> line 34, in <module>
> from . import version
> File "/usr/local/python3/lib/python3.7/site-
packages/h5py/version.py",
> line 17, in <module>
> from . import h5 as _h5
> File "h5py/h5.pyx", line 1, in init h5py.h5
> ImportError: /usr/local/python3/lib/python3.7/site-packages/h5py/
> defs.cpython-37m-x86_64-linux-gnu.so: undefined symbol:
H5Ovisit_by_name
> WARNING:
> WARNING: python_dataplane() -> an error occurred importing module
> "/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5"
> WARNING:
> ERROR :
> ERROR : get_field() -> can't get data plane from file
"PYTHON_NUMPY"
> ERROR :
>
> I'm not sure if I'm not using the correct version of python or if
there's
> something else that is going wrong.
>
> Thanks!
> Brianne
>
>
------------------------------------------------
Subject: METv9.1 error with imerg HDF5 data
From: briannen at ucar.edu
Time: Mon Jan 25 12:09:32 2021
Sure! I'm working on mohawk. In /d2/projects/AF/model_imp/scripts
there is
a script called run_grid_stat.sh that I use to run everything. It
currently
only has the pcp_combine command uncommented.
Brianne
On Mon, Jan 25, 2021 at 11:04 AM John Halley Gotway via RT <
met_help at ucar.edu> wrote:
> Hi Brianne,
>
> I see you're having a problem with a python embedding script in MET.
I'd
> like to try to replicate this behavior to figure out what's going
on.
>
> Can you tell me the machine you're using, and if possible, send me
commands
> I can copy/paste to demonstrate the error?
>
> Thanks,
> John Halley Gotway
>
> On Mon, Jan 25, 2021 at 10:57 AM briannen at ucar.edu via RT <
> met_help at ucar.edu>
> wrote:
>
> >
> > Mon Jan 25 10:57:50 2021: Request 98380 was acted upon.
> > Transaction: Ticket created by briannen at ucar.edu
> > Queue: met_help
> > Subject: METv9.1 error with imerg HDF5 data
> > Owner: Nobody
> > Requestors: briannen at ucar.edu
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380 >
> >
> >
> > Hi!
> >
> > I am currently trying to run pcp_combine in METv9.1 on mohawk with
imerg
> > HDF5 data. I have a script that John wrote called
sum_IMERG_V06_HDF5.py.
> I
> > have used a similar version of the script in the past using imerg
NetCDF
> > data that worked fine with the most recent version of python.
> >
> > I'm getting the following error:
> > Running pcp_combine for IMERG data
> > DEBUG 2: Since the "-field" command line option was not used,
parsing the
> > command line arguments a list of files, each followed by a
configuration
> > string.
> > DEBUG 2: Performing derivation command (sum) for 1 files.
> > DEBUG 1: Reading data (name="${SCRIPTS_PATH}/sum_IMERG_V06_HDF5.py
> > ${OBS_PATH_APCP} IRprecipitation ${YYYYMMDD}${VHH_APCP}
${ACCUM_TIME}";)
> > from input file: PYTHON_NUMPY
> > Traceback (most recent call last):
> > File "/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py",
line 7,
> > in <module>
> > import h5py
> > File "/usr/local/python3/lib/python3.7/site-
packages/h5py/__init__.py",
> > line 34, in <module>
> > from . import version
> > File "/usr/local/python3/lib/python3.7/site-
packages/h5py/version.py",
> > line 17, in <module>
> > from . import h5 as _h5
> > File "h5py/h5.pyx", line 1, in init h5py.h5
> > ImportError: /usr/local/python3/lib/python3.7/site-packages/h5py/
> > defs.cpython-37m-x86_64-linux-gnu.so: undefined symbol:
H5Ovisit_by_name
> > WARNING:
> > WARNING: python_dataplane() -> an error occurred importing module
> > "/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5"
> > WARNING:
> > ERROR :
> > ERROR : get_field() -> can't get data plane from file
"PYTHON_NUMPY"
> > ERROR :
> >
> > I'm not sure if I'm not using the correct version of python or if
there's
> > something else that is going wrong.
> >
> > Thanks!
> > Brianne
> >
> >
>
>
------------------------------------------------
Subject: METv9.1 error with imerg HDF5 data
From: John Halley Gotway
Time: Mon Jan 25 15:42:40 2021
Brianne,
When I run your python command by hand, it fails:
*python /d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py
/d2/projects/AF/model_imp/sample_data/imerg IRprecipitation 2020080303
03*
Traceback (most recent call last):
File "/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py", line
7,
in <module>
import h5py
File "/usr/local/python3/lib/python3.7/site-
packages/h5py/__init__.py",
line 26, in <module>
from . import _errors
ImportError: cannot import name _error
The first step in python embedding is making sure that the python
command
runs fine on its own. You'll need to use a version of python that
includes
the h5py module.
Has this script ever run successfully on mohawk or is this the first
time
you've tried it?
John
On Mon, Jan 25, 2021 at 12:10 PM briannen at ucar.edu via RT
<met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380 >
>
> Sure! I'm working on mohawk. In /d2/projects/AF/model_imp/scripts
there is
> a script called run_grid_stat.sh that I use to run everything. It
currently
> only has the pcp_combine command uncommented.
>
> Brianne
>
> On Mon, Jan 25, 2021 at 11:04 AM John Halley Gotway via RT <
> met_help at ucar.edu> wrote:
>
> > Hi Brianne,
> >
> > I see you're having a problem with a python embedding script in
MET. I'd
> > like to try to replicate this behavior to figure out what's going
on.
> >
> > Can you tell me the machine you're using, and if possible, send me
> commands
> > I can copy/paste to demonstrate the error?
> >
> > Thanks,
> > John Halley Gotway
> >
> > On Mon, Jan 25, 2021 at 10:57 AM briannen at ucar.edu via RT <
> > met_help at ucar.edu>
> > wrote:
> >
> > >
> > > Mon Jan 25 10:57:50 2021: Request 98380 was acted upon.
> > > Transaction: Ticket created by briannen at ucar.edu
> > > Queue: met_help
> > > Subject: METv9.1 error with imerg HDF5 data
> > > Owner: Nobody
> > > Requestors: briannen at ucar.edu
> > > Status: new
> > > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380
> >
> > >
> > >
> > > Hi!
> > >
> > > I am currently trying to run pcp_combine in METv9.1 on mohawk
with
> imerg
> > > HDF5 data. I have a script that John wrote called
> sum_IMERG_V06_HDF5.py.
> > I
> > > have used a similar version of the script in the past using
imerg
> NetCDF
> > > data that worked fine with the most recent version of python.
> > >
> > > I'm getting the following error:
> > > Running pcp_combine for IMERG data
> > > DEBUG 2: Since the "-field" command line option was not used,
parsing
> the
> > > command line arguments a list of files, each followed by a
> configuration
> > > string.
> > > DEBUG 2: Performing derivation command (sum) for 1 files.
> > > DEBUG 1: Reading data
(name="${SCRIPTS_PATH}/sum_IMERG_V06_HDF5.py
> > > ${OBS_PATH_APCP} IRprecipitation ${YYYYMMDD}${VHH_APCP}
> ${ACCUM_TIME}";)
> > > from input file: PYTHON_NUMPY
> > > Traceback (most recent call last):
> > > File
"/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py", line
> 7,
> > > in <module>
> > > import h5py
> > > File
> "/usr/local/python3/lib/python3.7/site-packages/h5py/__init__.py",
> > > line 34, in <module>
> > > from . import version
> > > File
> "/usr/local/python3/lib/python3.7/site-packages/h5py/version.py",
> > > line 17, in <module>
> > > from . import h5 as _h5
> > > File "h5py/h5.pyx", line 1, in init h5py.h5
> > > ImportError: /usr/local/python3/lib/python3.7/site-
packages/h5py/
> > > defs.cpython-37m-x86_64-linux-gnu.so: undefined symbol:
> H5Ovisit_by_name
> > > WARNING:
> > > WARNING: python_dataplane() -> an error occurred importing
module
> > > "/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5"
> > > WARNING:
> > > ERROR :
> > > ERROR : get_field() -> can't get data plane from file
"PYTHON_NUMPY"
> > > ERROR :
> > >
> > > I'm not sure if I'm not using the correct version of python or
if
> there's
> > > something else that is going wrong.
> > >
> > > Thanks!
> > > Brianne
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: METv9.1 error with imerg HDF5 data
From: briannen at ucar.edu
Time: Mon Jan 25 15:44:43 2021
This is the first time that I have tried on mohawk. I have also tried
it on
dakota, and it's not working there either.
Brianne
On Mon, Jan 25, 2021 at 3:42 PM John Halley Gotway via RT
<met_help at ucar.edu>
wrote:
> Brianne,
>
> When I run your python command by hand, it fails:
>
> *python /d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py
> /d2/projects/AF/model_imp/sample_data/imerg IRprecipitation
2020080303 03*
>
> Traceback (most recent call last):
> File "/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py",
line 7,
> in <module>
> import h5py
> File "/usr/local/python3/lib/python3.7/site-
packages/h5py/__init__.py",
> line 26, in <module>
> from . import _errors
> ImportError: cannot import name _error
>
> The first step in python embedding is making sure that the python
command
> runs fine on its own. You'll need to use a version of python that
includes
> the h5py module.
>
> Has this script ever run successfully on mohawk or is this the first
time
> you've tried it?
>
> John
>
> On Mon, Jan 25, 2021 at 12:10 PM briannen at ucar.edu via RT <
> met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380 >
> >
> > Sure! I'm working on mohawk. In /d2/projects/AF/model_imp/scripts
there
> is
> > a script called run_grid_stat.sh that I use to run everything. It
> currently
> > only has the pcp_combine command uncommented.
> >
> > Brianne
> >
> > On Mon, Jan 25, 2021 at 11:04 AM John Halley Gotway via RT <
> > met_help at ucar.edu> wrote:
> >
> > > Hi Brianne,
> > >
> > > I see you're having a problem with a python embedding script in
MET.
> I'd
> > > like to try to replicate this behavior to figure out what's
going on.
> > >
> > > Can you tell me the machine you're using, and if possible, send
me
> > commands
> > > I can copy/paste to demonstrate the error?
> > >
> > > Thanks,
> > > John Halley Gotway
> > >
> > > On Mon, Jan 25, 2021 at 10:57 AM briannen at ucar.edu via RT <
> > > met_help at ucar.edu>
> > > wrote:
> > >
> > > >
> > > > Mon Jan 25 10:57:50 2021: Request 98380 was acted upon.
> > > > Transaction: Ticket created by briannen at ucar.edu
> > > > Queue: met_help
> > > > Subject: METv9.1 error with imerg HDF5 data
> > > > Owner: Nobody
> > > > Requestors: briannen at ucar.edu
> > > > Status: new
> > > > Ticket <URL:
> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380
> > >
> > > >
> > > >
> > > > Hi!
> > > >
> > > > I am currently trying to run pcp_combine in METv9.1 on mohawk
with
> > imerg
> > > > HDF5 data. I have a script that John wrote called
> > sum_IMERG_V06_HDF5.py.
> > > I
> > > > have used a similar version of the script in the past using
imerg
> > NetCDF
> > > > data that worked fine with the most recent version of python.
> > > >
> > > > I'm getting the following error:
> > > > Running pcp_combine for IMERG data
> > > > DEBUG 2: Since the "-field" command line option was not used,
parsing
> > the
> > > > command line arguments a list of files, each followed by a
> > configuration
> > > > string.
> > > > DEBUG 2: Performing derivation command (sum) for 1 files.
> > > > DEBUG 1: Reading data
(name="${SCRIPTS_PATH}/sum_IMERG_V06_HDF5.py
> > > > ${OBS_PATH_APCP} IRprecipitation ${YYYYMMDD}${VHH_APCP}
> > ${ACCUM_TIME}";)
> > > > from input file: PYTHON_NUMPY
> > > > Traceback (most recent call last):
> > > > File
"/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py",
> line
> > 7,
> > > > in <module>
> > > > import h5py
> > > > File
> > "/usr/local/python3/lib/python3.7/site-packages/h5py/__init__.py",
> > > > line 34, in <module>
> > > > from . import version
> > > > File
> > "/usr/local/python3/lib/python3.7/site-packages/h5py/version.py",
> > > > line 17, in <module>
> > > > from . import h5 as _h5
> > > > File "h5py/h5.pyx", line 1, in init h5py.h5
> > > > ImportError: /usr/local/python3/lib/python3.7/site-
packages/h5py/
> > > > defs.cpython-37m-x86_64-linux-gnu.so: undefined symbol:
> > H5Ovisit_by_name
> > > > WARNING:
> > > > WARNING: python_dataplane() -> an error occurred importing
module
> > > > "/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5"
> > > > WARNING:
> > > > ERROR :
> > > > ERROR : get_field() -> can't get data plane from file
"PYTHON_NUMPY"
> > > > ERROR :
> > > >
> > > > I'm not sure if I'm not using the correct version of python or
if
> > there's
> > > > something else that is going wrong.
> > > >
> > > > Thanks!
> > > > Brianne
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: METv9.1 error with imerg HDF5 data
From: John Halley Gotway
Time: Mon Jan 25 17:01:12 2021
Brianne,
Please try setting:
*export MET_PYTHON_EXE=/usr/local/python3/bin/python3*
And then re-running.
*/usr/local/met/bin/pcp_combine -add PYTHON_NUMPY
'name="/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py
/d2/projects/AF/model_imp/sample_data/imerg IRprecipitation 2020080303
03";' -name APCP_03 ./metprd/pcp_combine/IMERG_03H_00.00_20200803-
030000.nc
<http://IMERG_03H_00.00_20200803-030000.nc>*
That makes it much further.
You can read about MET_PYTHON_EXE in this chapter:
https://dtcenter.github.io/MET/latest/Users_Guide/appendixF.html?highlight=met_python_exe
Thanks,
John
On Mon, Jan 25, 2021 at 3:56 PM briannen at ucar.edu via RT
<met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380 >
>
> This is the first time that I have tried on mohawk. I have also
tried it on
> dakota, and it's not working there either.
>
> Brianne
>
> On Mon, Jan 25, 2021 at 3:42 PM John Halley Gotway via RT <
> met_help at ucar.edu>
> wrote:
>
> > Brianne,
> >
> > When I run your python command by hand, it fails:
> >
> > *python /d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py
> > /d2/projects/AF/model_imp/sample_data/imerg IRprecipitation
2020080303
> 03*
> >
> > Traceback (most recent call last):
> > File "/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py",
line 7,
> > in <module>
> > import h5py
> > File "/usr/local/python3/lib/python3.7/site-
packages/h5py/__init__.py",
> > line 26, in <module>
> > from . import _errors
> > ImportError: cannot import name _error
> >
> > The first step in python embedding is making sure that the python
command
> > runs fine on its own. You'll need to use a version of python that
> includes
> > the h5py module.
> >
> > Has this script ever run successfully on mohawk or is this the
first time
> > you've tried it?
> >
> > John
> >
> > On Mon, Jan 25, 2021 at 12:10 PM briannen at ucar.edu via RT <
> > met_help at ucar.edu>
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380 >
> > >
> > > Sure! I'm working on mohawk. In
/d2/projects/AF/model_imp/scripts there
> > is
> > > a script called run_grid_stat.sh that I use to run everything.
It
> > currently
> > > only has the pcp_combine command uncommented.
> > >
> > > Brianne
> > >
> > > On Mon, Jan 25, 2021 at 11:04 AM John Halley Gotway via RT <
> > > met_help at ucar.edu> wrote:
> > >
> > > > Hi Brianne,
> > > >
> > > > I see you're having a problem with a python embedding script
in MET.
> > I'd
> > > > like to try to replicate this behavior to figure out what's
going on.
> > > >
> > > > Can you tell me the machine you're using, and if possible,
send me
> > > commands
> > > > I can copy/paste to demonstrate the error?
> > > >
> > > > Thanks,
> > > > John Halley Gotway
> > > >
> > > > On Mon, Jan 25, 2021 at 10:57 AM briannen at ucar.edu via RT <
> > > > met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > >
> > > > > Mon Jan 25 10:57:50 2021: Request 98380 was acted upon.
> > > > > Transaction: Ticket created by briannen at ucar.edu
> > > > > Queue: met_help
> > > > > Subject: METv9.1 error with imerg HDF5 data
> > > > > Owner: Nobody
> > > > > Requestors: briannen at ucar.edu
> > > > > Status: new
> > > > > Ticket <URL:
> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380
> > > >
> > > > >
> > > > >
> > > > > Hi!
> > > > >
> > > > > I am currently trying to run pcp_combine in METv9.1 on
mohawk with
> > > imerg
> > > > > HDF5 data. I have a script that John wrote called
> > > sum_IMERG_V06_HDF5.py.
> > > > I
> > > > > have used a similar version of the script in the past using
imerg
> > > NetCDF
> > > > > data that worked fine with the most recent version of
python.
> > > > >
> > > > > I'm getting the following error:
> > > > > Running pcp_combine for IMERG data
> > > > > DEBUG 2: Since the "-field" command line option was not
used,
> parsing
> > > the
> > > > > command line arguments a list of files, each followed by a
> > > configuration
> > > > > string.
> > > > > DEBUG 2: Performing derivation command (sum) for 1 files.
> > > > > DEBUG 1: Reading data
(name="${SCRIPTS_PATH}/sum_IMERG_V06_HDF5.py
> > > > > ${OBS_PATH_APCP} IRprecipitation ${YYYYMMDD}${VHH_APCP}
> > > ${ACCUM_TIME}";)
> > > > > from input file: PYTHON_NUMPY
> > > > > Traceback (most recent call last):
> > > > > File
"/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py",
> > line
> > > 7,
> > > > > in <module>
> > > > > import h5py
> > > > > File
> > > "/usr/local/python3/lib/python3.7/site-
packages/h5py/__init__.py",
> > > > > line 34, in <module>
> > > > > from . import version
> > > > > File
> > > "/usr/local/python3/lib/python3.7/site-
packages/h5py/version.py",
> > > > > line 17, in <module>
> > > > > from . import h5 as _h5
> > > > > File "h5py/h5.pyx", line 1, in init h5py.h5
> > > > > ImportError: /usr/local/python3/lib/python3.7/site-
packages/h5py/
> > > > > defs.cpython-37m-x86_64-linux-gnu.so: undefined symbol:
> > > H5Ovisit_by_name
> > > > > WARNING:
> > > > > WARNING: python_dataplane() -> an error occurred importing
module
> > > > > "/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5"
> > > > > WARNING:
> > > > > ERROR :
> > > > > ERROR : get_field() -> can't get data plane from file
> "PYTHON_NUMPY"
> > > > > ERROR :
> > > > >
> > > > > I'm not sure if I'm not using the correct version of python
or if
> > > there's
> > > > > something else that is going wrong.
> > > > >
> > > > > Thanks!
> > > > > Brianne
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: METv9.1 error with imerg HDF5 data
From: briannen at ucar.edu
Time: Mon Jan 25 17:08:52 2021
That did go a lot farther! I'm not sure what the new error is though
(it's
at the very end after it's run through several times):
Python Script: read_pickle_dataplane
Load Pickle: /tmp/tmp_met_pickle_4836_0
ERROR :
ERROR : Python3_Dict::lookup_double(const char * key) -> value for
key
"lat_ll" not a floating point number
ERROR :
Bri
On Mon, Jan 25, 2021 at 5:01 PM John Halley Gotway via RT
<met_help at ucar.edu>
wrote:
> Brianne,
>
> Please try setting:
> *export MET_PYTHON_EXE=/usr/local/python3/bin/python3*
>
> And then re-running.
> */usr/local/met/bin/pcp_combine -add PYTHON_NUMPY
> 'name="/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py
> /d2/projects/AF/model_imp/sample_data/imerg IRprecipitation
2020080303
> 03";' -name APCP_03 ./metprd/pcp_combine/
> IMERG_03H_00.00_20200803-030000.nc
> <http://IMERG_03H_00.00_20200803-030000.nc>*
>
> That makes it much further.
>
> You can read about MET_PYTHON_EXE in this chapter:
>
>
https://dtcenter.github.io/MET/latest/Users_Guide/appendixF.html?highlight=met_python_exe
>
> Thanks,
> John
>
> On Mon, Jan 25, 2021 at 3:56 PM briannen at ucar.edu via RT <
> met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380 >
> >
> > This is the first time that I have tried on mohawk. I have also
tried it
> on
> > dakota, and it's not working there either.
> >
> > Brianne
> >
> > On Mon, Jan 25, 2021 at 3:42 PM John Halley Gotway via RT <
> > met_help at ucar.edu>
> > wrote:
> >
> > > Brianne,
> > >
> > > When I run your python command by hand, it fails:
> > >
> > > *python /d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py
> > > /d2/projects/AF/model_imp/sample_data/imerg IRprecipitation
2020080303
> > 03*
> > >
> > > Traceback (most recent call last):
> > > File
"/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py", line
> 7,
> > > in <module>
> > > import h5py
> > > File
> "/usr/local/python3/lib/python3.7/site-packages/h5py/__init__.py",
> > > line 26, in <module>
> > > from . import _errors
> > > ImportError: cannot import name _error
> > >
> > > The first step in python embedding is making sure that the
python
> command
> > > runs fine on its own. You'll need to use a version of python
that
> > includes
> > > the h5py module.
> > >
> > > Has this script ever run successfully on mohawk or is this the
first
> time
> > > you've tried it?
> > >
> > > John
> > >
> > > On Mon, Jan 25, 2021 at 12:10 PM briannen at ucar.edu via RT <
> > > met_help at ucar.edu>
> > > wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380
>
> > > >
> > > > Sure! I'm working on mohawk. In
/d2/projects/AF/model_imp/scripts
> there
> > > is
> > > > a script called run_grid_stat.sh that I use to run everything.
It
> > > currently
> > > > only has the pcp_combine command uncommented.
> > > >
> > > > Brianne
> > > >
> > > > On Mon, Jan 25, 2021 at 11:04 AM John Halley Gotway via RT <
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > > Hi Brianne,
> > > > >
> > > > > I see you're having a problem with a python embedding script
in
> MET.
> > > I'd
> > > > > like to try to replicate this behavior to figure out what's
going
> on.
> > > > >
> > > > > Can you tell me the machine you're using, and if possible,
send me
> > > > commands
> > > > > I can copy/paste to demonstrate the error?
> > > > >
> > > > > Thanks,
> > > > > John Halley Gotway
> > > > >
> > > > > On Mon, Jan 25, 2021 at 10:57 AM briannen at ucar.edu via RT <
> > > > > met_help at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > >
> > > > > > Mon Jan 25 10:57:50 2021: Request 98380 was acted upon.
> > > > > > Transaction: Ticket created by briannen at ucar.edu
> > > > > > Queue: met_help
> > > > > > Subject: METv9.1 error with imerg HDF5 data
> > > > > > Owner: Nobody
> > > > > > Requestors: briannen at ucar.edu
> > > > > > Status: new
> > > > > > Ticket <URL:
> > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380
> > > > >
> > > > > >
> > > > > >
> > > > > > Hi!
> > > > > >
> > > > > > I am currently trying to run pcp_combine in METv9.1 on
mohawk
> with
> > > > imerg
> > > > > > HDF5 data. I have a script that John wrote called
> > > > sum_IMERG_V06_HDF5.py.
> > > > > I
> > > > > > have used a similar version of the script in the past
using imerg
> > > > NetCDF
> > > > > > data that worked fine with the most recent version of
python.
> > > > > >
> > > > > > I'm getting the following error:
> > > > > > Running pcp_combine for IMERG data
> > > > > > DEBUG 2: Since the "-field" command line option was not
used,
> > parsing
> > > > the
> > > > > > command line arguments a list of files, each followed by a
> > > > configuration
> > > > > > string.
> > > > > > DEBUG 2: Performing derivation command (sum) for 1 files.
> > > > > > DEBUG 1: Reading data
> (name="${SCRIPTS_PATH}/sum_IMERG_V06_HDF5.py
> > > > > > ${OBS_PATH_APCP} IRprecipitation ${YYYYMMDD}${VHH_APCP}
> > > > ${ACCUM_TIME}";)
> > > > > > from input file: PYTHON_NUMPY
> > > > > > Traceback (most recent call last):
> > > > > > File
"/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py",
> > > line
> > > > 7,
> > > > > > in <module>
> > > > > > import h5py
> > > > > > File
> > > > "/usr/local/python3/lib/python3.7/site-
packages/h5py/__init__.py",
> > > > > > line 34, in <module>
> > > > > > from . import version
> > > > > > File
> > > > "/usr/local/python3/lib/python3.7/site-
packages/h5py/version.py",
> > > > > > line 17, in <module>
> > > > > > from . import h5 as _h5
> > > > > > File "h5py/h5.pyx", line 1, in init h5py.h5
> > > > > > ImportError: /usr/local/python3/lib/python3.7/site-
packages/h5py/
> > > > > > defs.cpython-37m-x86_64-linux-gnu.so: undefined symbol:
> > > > H5Ovisit_by_name
> > > > > > WARNING:
> > > > > > WARNING: python_dataplane() -> an error occurred importing
module
> > > > > > "/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5"
> > > > > > WARNING:
> > > > > > ERROR :
> > > > > > ERROR : get_field() -> can't get data plane from file
> > "PYTHON_NUMPY"
> > > > > > ERROR :
> > > > > >
> > > > > > I'm not sure if I'm not using the correct version of
python or if
> > > > there's
> > > > > > something else that is going wrong.
> > > > > >
> > > > > > Thanks!
> > > > > > Brianne
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: METv9.1 error with imerg HDF5 data
From: John Halley Gotway
Time: Mon Jan 25 19:07:05 2021
Bri,
Please try using this version of that script:
/d2/personal/johnhg/MET/MET_Help/brianne_data_20210125/sum_IMERG_V06_HDF5.py
It includes 3 changes... storing lat_ll and lon_ll as np.float64 and
converting the "units" to a string. That makes pcp_combine happy.
Would be
interesting to know if the updated development version for met-10.0.0
would
be as picky? But I didn't have a chance to test that.
John
On Mon, Jan 25, 2021 at 5:09 PM briannen at ucar.edu via RT
<met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380 >
>
> That did go a lot farther! I'm not sure what the new error is though
(it's
> at the very end after it's run through several times):
> Python Script: read_pickle_dataplane
> Load Pickle: /tmp/tmp_met_pickle_4836_0
> ERROR :
> ERROR : Python3_Dict::lookup_double(const char * key) -> value for
key
> "lat_ll" not a floating point number
> ERROR :
>
> Bri
>
> On Mon, Jan 25, 2021 at 5:01 PM John Halley Gotway via RT <
> met_help at ucar.edu>
> wrote:
>
> > Brianne,
> >
> > Please try setting:
> > *export MET_PYTHON_EXE=/usr/local/python3/bin/python3*
> >
> > And then re-running.
> > */usr/local/met/bin/pcp_combine -add PYTHON_NUMPY
> > 'name="/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py
> > /d2/projects/AF/model_imp/sample_data/imerg IRprecipitation
2020080303
> > 03";' -name APCP_03 ./metprd/pcp_combine/
> > IMERG_03H_00.00_20200803-030000.nc
> > <http://IMERG_03H_00.00_20200803-030000.nc>*
> >
> > That makes it much further.
> >
> > You can read about MET_PYTHON_EXE in this chapter:
> >
> >
>
https://dtcenter.github.io/MET/latest/Users_Guide/appendixF.html?highlight=met_python_exe
> >
> > Thanks,
> > John
> >
> > On Mon, Jan 25, 2021 at 3:56 PM briannen at ucar.edu via RT <
> > met_help at ucar.edu>
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380 >
> > >
> > > This is the first time that I have tried on mohawk. I have also
tried
> it
> > on
> > > dakota, and it's not working there either.
> > >
> > > Brianne
> > >
> > > On Mon, Jan 25, 2021 at 3:42 PM John Halley Gotway via RT <
> > > met_help at ucar.edu>
> > > wrote:
> > >
> > > > Brianne,
> > > >
> > > > When I run your python command by hand, it fails:
> > > >
> > > > *python
/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py
> > > > /d2/projects/AF/model_imp/sample_data/imerg IRprecipitation
> 2020080303
> > > 03*
> > > >
> > > > Traceback (most recent call last):
> > > > File
"/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py",
> line
> > 7,
> > > > in <module>
> > > > import h5py
> > > > File
> > "/usr/local/python3/lib/python3.7/site-packages/h5py/__init__.py",
> > > > line 26, in <module>
> > > > from . import _errors
> > > > ImportError: cannot import name _error
> > > >
> > > > The first step in python embedding is making sure that the
python
> > command
> > > > runs fine on its own. You'll need to use a version of python
that
> > > includes
> > > > the h5py module.
> > > >
> > > > Has this script ever run successfully on mohawk or is this the
first
> > time
> > > > you've tried it?
> > > >
> > > > John
> > > >
> > > > On Mon, Jan 25, 2021 at 12:10 PM briannen at ucar.edu via RT <
> > > > met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380 >
> > > > >
> > > > > Sure! I'm working on mohawk. In
/d2/projects/AF/model_imp/scripts
> > there
> > > > is
> > > > > a script called run_grid_stat.sh that I use to run
everything. It
> > > > currently
> > > > > only has the pcp_combine command uncommented.
> > > > >
> > > > > Brianne
> > > > >
> > > > > On Mon, Jan 25, 2021 at 11:04 AM John Halley Gotway via RT <
> > > > > met_help at ucar.edu> wrote:
> > > > >
> > > > > > Hi Brianne,
> > > > > >
> > > > > > I see you're having a problem with a python embedding
script in
> > MET.
> > > > I'd
> > > > > > like to try to replicate this behavior to figure out
what's going
> > on.
> > > > > >
> > > > > > Can you tell me the machine you're using, and if possible,
send
> me
> > > > > commands
> > > > > > I can copy/paste to demonstrate the error?
> > > > > >
> > > > > > Thanks,
> > > > > > John Halley Gotway
> > > > > >
> > > > > > On Mon, Jan 25, 2021 at 10:57 AM briannen at ucar.edu via RT
<
> > > > > > met_help at ucar.edu>
> > > > > > wrote:
> > > > > >
> > > > > > >
> > > > > > > Mon Jan 25 10:57:50 2021: Request 98380 was acted upon.
> > > > > > > Transaction: Ticket created by briannen at ucar.edu
> > > > > > > Queue: met_help
> > > > > > > Subject: METv9.1 error with imerg HDF5 data
> > > > > > > Owner: Nobody
> > > > > > > Requestors: briannen at ucar.edu
> > > > > > > Status: new
> > > > > > > Ticket <URL:
> > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380
> > > > > >
> > > > > > >
> > > > > > >
> > > > > > > Hi!
> > > > > > >
> > > > > > > I am currently trying to run pcp_combine in METv9.1 on
mohawk
> > with
> > > > > imerg
> > > > > > > HDF5 data. I have a script that John wrote called
> > > > > sum_IMERG_V06_HDF5.py.
> > > > > > I
> > > > > > > have used a similar version of the script in the past
using
> imerg
> > > > > NetCDF
> > > > > > > data that worked fine with the most recent version of
python.
> > > > > > >
> > > > > > > I'm getting the following error:
> > > > > > > Running pcp_combine for IMERG data
> > > > > > > DEBUG 2: Since the "-field" command line option was not
used,
> > > parsing
> > > > > the
> > > > > > > command line arguments a list of files, each followed by
a
> > > > > configuration
> > > > > > > string.
> > > > > > > DEBUG 2: Performing derivation command (sum) for 1
files.
> > > > > > > DEBUG 1: Reading data
> > (name="${SCRIPTS_PATH}/sum_IMERG_V06_HDF5.py
> > > > > > > ${OBS_PATH_APCP} IRprecipitation ${YYYYMMDD}${VHH_APCP}
> > > > > ${ACCUM_TIME}";)
> > > > > > > from input file: PYTHON_NUMPY
> > > > > > > Traceback (most recent call last):
> > > > > > > File
> "/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py",
> > > > line
> > > > > 7,
> > > > > > > in <module>
> > > > > > > import h5py
> > > > > > > File
> > > > > "/usr/local/python3/lib/python3.7/site-
packages/h5py/__init__.py",
> > > > > > > line 34, in <module>
> > > > > > > from . import version
> > > > > > > File
> > > > > "/usr/local/python3/lib/python3.7/site-
packages/h5py/version.py",
> > > > > > > line 17, in <module>
> > > > > > > from . import h5 as _h5
> > > > > > > File "h5py/h5.pyx", line 1, in init h5py.h5
> > > > > > > ImportError:
> /usr/local/python3/lib/python3.7/site-packages/h5py/
> > > > > > > defs.cpython-37m-x86_64-linux-gnu.so: undefined symbol:
> > > > > H5Ovisit_by_name
> > > > > > > WARNING:
> > > > > > > WARNING: python_dataplane() -> an error occurred
importing
> module
> > > > > > > "/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5"
> > > > > > > WARNING:
> > > > > > > ERROR :
> > > > > > > ERROR : get_field() -> can't get data plane from file
> > > "PYTHON_NUMPY"
> > > > > > > ERROR :
> > > > > > >
> > > > > > > I'm not sure if I'm not using the correct version of
python or
> if
> > > > > there's
> > > > > > > something else that is going wrong.
> > > > > > >
> > > > > > > Thanks!
> > > > > > > Brianne
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: METv9.1 error with imerg HDF5 data
From: briannen at ucar.edu
Time: Tue Jan 26 09:54:47 2021
Thanks John! It looks good!
Bri
On Mon, Jan 25, 2021 at 7:07 PM John Halley Gotway via RT
<met_help at ucar.edu>
wrote:
> Bri,
>
> Please try using this version of that script:
>
>
>
/d2/personal/johnhg/MET/MET_Help/brianne_data_20210125/sum_IMERG_V06_HDF5.py
>
> It includes 3 changes... storing lat_ll and lon_ll as np.float64 and
> converting the "units" to a string. That makes pcp_combine happy.
Would be
> interesting to know if the updated development version for met-
10.0.0 would
> be as picky? But I didn't have a chance to test that.
>
> John
>
>
> On Mon, Jan 25, 2021 at 5:09 PM briannen at ucar.edu via RT <
> met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380 >
> >
> > That did go a lot farther! I'm not sure what the new error is
though
> (it's
> > at the very end after it's run through several times):
> > Python Script: read_pickle_dataplane
> > Load Pickle: /tmp/tmp_met_pickle_4836_0
> > ERROR :
> > ERROR : Python3_Dict::lookup_double(const char * key) -> value
for key
> > "lat_ll" not a floating point number
> > ERROR :
> >
> > Bri
> >
> > On Mon, Jan 25, 2021 at 5:01 PM John Halley Gotway via RT <
> > met_help at ucar.edu>
> > wrote:
> >
> > > Brianne,
> > >
> > > Please try setting:
> > > *export MET_PYTHON_EXE=/usr/local/python3/bin/python3*
> > >
> > > And then re-running.
> > > */usr/local/met/bin/pcp_combine -add PYTHON_NUMPY
> > > 'name="/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py
> > > /d2/projects/AF/model_imp/sample_data/imerg IRprecipitation
2020080303
> > > 03";' -name APCP_03 ./metprd/pcp_combine/
> > > IMERG_03H_00.00_20200803-030000.nc
> > > <http://IMERG_03H_00.00_20200803-030000.nc>*
> > >
> > > That makes it much further.
> > >
> > > You can read about MET_PYTHON_EXE in this chapter:
> > >
> > >
> >
>
https://dtcenter.github.io/MET/latest/Users_Guide/appendixF.html?highlight=met_python_exe
> > >
> > > Thanks,
> > > John
> > >
> > > On Mon, Jan 25, 2021 at 3:56 PM briannen at ucar.edu via RT <
> > > met_help at ucar.edu>
> > > wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380
>
> > > >
> > > > This is the first time that I have tried on mohawk. I have
also tried
> > it
> > > on
> > > > dakota, and it's not working there either.
> > > >
> > > > Brianne
> > > >
> > > > On Mon, Jan 25, 2021 at 3:42 PM John Halley Gotway via RT <
> > > > met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > > Brianne,
> > > > >
> > > > > When I run your python command by hand, it fails:
> > > > >
> > > > > *python
/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py
> > > > > /d2/projects/AF/model_imp/sample_data/imerg IRprecipitation
> > 2020080303
> > > > 03*
> > > > >
> > > > > Traceback (most recent call last):
> > > > > File
"/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py",
> > line
> > > 7,
> > > > > in <module>
> > > > > import h5py
> > > > > File
> > > "/usr/local/python3/lib/python3.7/site-
packages/h5py/__init__.py",
> > > > > line 26, in <module>
> > > > > from . import _errors
> > > > > ImportError: cannot import name _error
> > > > >
> > > > > The first step in python embedding is making sure that the
python
> > > command
> > > > > runs fine on its own. You'll need to use a version of python
that
> > > > includes
> > > > > the h5py module.
> > > > >
> > > > > Has this script ever run successfully on mohawk or is this
the
> first
> > > time
> > > > > you've tried it?
> > > > >
> > > > > John
> > > > >
> > > > > On Mon, Jan 25, 2021 at 12:10 PM briannen at ucar.edu via RT <
> > > > > met_help at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380 >
> > > > > >
> > > > > > Sure! I'm working on mohawk. In
/d2/projects/AF/model_imp/scripts
> > > there
> > > > > is
> > > > > > a script called run_grid_stat.sh that I use to run
everything. It
> > > > > currently
> > > > > > only has the pcp_combine command uncommented.
> > > > > >
> > > > > > Brianne
> > > > > >
> > > > > > On Mon, Jan 25, 2021 at 11:04 AM John Halley Gotway via RT
<
> > > > > > met_help at ucar.edu> wrote:
> > > > > >
> > > > > > > Hi Brianne,
> > > > > > >
> > > > > > > I see you're having a problem with a python embedding
script in
> > > MET.
> > > > > I'd
> > > > > > > like to try to replicate this behavior to figure out
what's
> going
> > > on.
> > > > > > >
> > > > > > > Can you tell me the machine you're using, and if
possible, send
> > me
> > > > > > commands
> > > > > > > I can copy/paste to demonstrate the error?
> > > > > > >
> > > > > > > Thanks,
> > > > > > > John Halley Gotway
> > > > > > >
> > > > > > > On Mon, Jan 25, 2021 at 10:57 AM briannen at ucar.edu via
RT <
> > > > > > > met_help at ucar.edu>
> > > > > > > wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > Mon Jan 25 10:57:50 2021: Request 98380 was acted
upon.
> > > > > > > > Transaction: Ticket created by briannen at ucar.edu
> > > > > > > > Queue: met_help
> > > > > > > > Subject: METv9.1 error with imerg HDF5 data
> > > > > > > > Owner: Nobody
> > > > > > > > Requestors: briannen at ucar.edu
> > > > > > > > Status: new
> > > > > > > > Ticket <URL:
> > > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=98380
> > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > Hi!
> > > > > > > >
> > > > > > > > I am currently trying to run pcp_combine in METv9.1 on
mohawk
> > > with
> > > > > > imerg
> > > > > > > > HDF5 data. I have a script that John wrote called
> > > > > > sum_IMERG_V06_HDF5.py.
> > > > > > > I
> > > > > > > > have used a similar version of the script in the past
using
> > imerg
> > > > > > NetCDF
> > > > > > > > data that worked fine with the most recent version of
python.
> > > > > > > >
> > > > > > > > I'm getting the following error:
> > > > > > > > Running pcp_combine for IMERG data
> > > > > > > > DEBUG 2: Since the "-field" command line option was
not used,
> > > > parsing
> > > > > > the
> > > > > > > > command line arguments a list of files, each followed
by a
> > > > > > configuration
> > > > > > > > string.
> > > > > > > > DEBUG 2: Performing derivation command (sum) for 1
files.
> > > > > > > > DEBUG 1: Reading data
> > > (name="${SCRIPTS_PATH}/sum_IMERG_V06_HDF5.py
> > > > > > > > ${OBS_PATH_APCP} IRprecipitation
${YYYYMMDD}${VHH_APCP}
> > > > > > ${ACCUM_TIME}";)
> > > > > > > > from input file: PYTHON_NUMPY
> > > > > > > > Traceback (most recent call last):
> > > > > > > > File
> > "/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5.py",
> > > > > line
> > > > > > 7,
> > > > > > > > in <module>
> > > > > > > > import h5py
> > > > > > > > File
> > > > > >
> "/usr/local/python3/lib/python3.7/site-packages/h5py/__init__.py",
> > > > > > > > line 34, in <module>
> > > > > > > > from . import version
> > > > > > > > File
> > > > > > "/usr/local/python3/lib/python3.7/site-
packages/h5py/version.py",
> > > > > > > > line 17, in <module>
> > > > > > > > from . import h5 as _h5
> > > > > > > > File "h5py/h5.pyx", line 1, in init h5py.h5
> > > > > > > > ImportError:
> > /usr/local/python3/lib/python3.7/site-packages/h5py/
> > > > > > > > defs.cpython-37m-x86_64-linux-gnu.so: undefined
symbol:
> > > > > > H5Ovisit_by_name
> > > > > > > > WARNING:
> > > > > > > > WARNING: python_dataplane() -> an error occurred
importing
> > module
> > > > > > > > "/d2/projects/AF/model_imp/scripts/sum_IMERG_V06_HDF5"
> > > > > > > > WARNING:
> > > > > > > > ERROR :
> > > > > > > > ERROR : get_field() -> can't get data plane from file
> > > > "PYTHON_NUMPY"
> > > > > > > > ERROR :
> > > > > > > >
> > > > > > > > I'm not sure if I'm not using the correct version of
python
> or
> > if
> > > > > > there's
> > > > > > > > something else that is going wrong.
> > > > > > > >
> > > > > > > > Thanks!
> > > > > > > > Brianne
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
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