[Met_help] [rt.rap.ucar.edu #97395] History for HDF5 on WCOSS cray for met/9.0.3
Julie Prestopnik via RT
met_help at ucar.edu
Thu Nov 12 12:31:39 MST 2020
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Hi Met Help,
I just switched to met/9.0.3 and I'm getting errors related to the version
of HDF5. I believe the version that is getting loaded from me is
hdf5/1.8.16 and I think it needs to be 1.8.18, however, I cannot find where
to load that version on the cray. Any help would be appreciated.
Thanks
Donnie
--
Donald Lippi
*IMSG* at NOAA/NWS/NCEP/EMC
----------------------------------------------------------------
Complete Ticket History
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Subject: HDF5 on WCOSS cray for met/9.0.3
From: Julie Prestopnik
Time: Tue Nov 10 07:56:31 2020
Hi Donnie.
I see that you are having trouble loading met version 9.0.3 due to
HDF5
problems. We are encouraging our users to no longer use the versions
of
met located at /gpfs/hps3/emc/global/noscrub/Julie.Prestopnik/met, but
to
instead use the new shared area located
at /gpfs/hps3/emc/meso/noscrub/emc.metplus/met. That area does not
have
9.0.3, but does have the latest stable release, 9.1.
To load you would run:
> module use /gpfs/hps3/emc/meso/noscrub/emc.metplus/modulefiles
> module load met/9.1
You can find this information on our Existing Builds page for each
version,
which you can find a link to on our MET download page
<https://dtcenter.org/community-code/model-evaluation-tools-
met/download>.
If possible, we would suggest using version 9.1 in the new area.
Eventually, all of the versions in
the /gpfs/hps3/emc/global/noscrub/Julie.Prestopnik/met area will be
removed.
I did take a look at the modulefile
for /gpfs/hps3/emc/global/noscrub/Julie.Prestopnik/9.0.3 and it is not
using an HDF5 module that is available as a module, but is using its
own
version of HDF5 that was built when MET was built. Perhaps you
already had
a different version loaded and there is a conflict? If you would like
to
continue to use this version, I suggest clearing out your environment
(or
at least any existing NetCDF and HDF5 modules that are loaded) and
trying
again. METv9.1 in the new shared emc.metplus area does load an
available
module of HDF5, which is "HDF5-serial-intel-sandybridge/1.8.9".
I hope that helps. Please let us know how it goes. If you continue
to
experience problems, please send the error that you receive and we'll
help
get it figured out.
Julie
On Tue, Nov 10, 2020 at 7:28 AM Donald Lippi - NOAA Affiliate via RT <
met_help at ucar.edu> wrote:
>
> Tue Nov 10 07:28:53 2020: Request 97395 was acted upon.
> Transaction: Ticket created by donald.e.lippi at noaa.gov
> Queue: met_help
> Subject: HDF5 on WCOSS cray for met/9.0.3
> Owner: Nobody
> Requestors: donald.e.lippi at noaa.gov
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97395 >
>
>
> Hi Met Help,
> I just switched to met/9.0.3 and I'm getting errors related to the
version
> of HDF5. I believe the version that is getting loaded from me is
> hdf5/1.8.16 and I think it needs to be 1.8.18, however, I cannot
find where
> to load that version on the cray. Any help would be appreciated.
>
> Thanks
> Donnie
> --
>
> Donald Lippi
>
> *IMSG* at NOAA/NWS/NCEP/EMC
>
>
--
Julie Prestopnik (she/her/hers)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
Subject: HDF5 on WCOSS cray for met/9.0.3
From: Donald Lippi - NOAA Affiliate
Time: Tue Nov 10 08:38:47 2020
Thanks. I switched to 9.1 and it looks like it is working.
On Tue, Nov 10, 2020 at 9:56 AM Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:
> Hi Donnie.
>
> I see that you are having trouble loading met version 9.0.3 due to
HDF5
> problems. We are encouraging our users to no longer use the
versions of
> met located at /gpfs/hps3/emc/global/noscrub/Julie.Prestopnik/met,
but to
> instead use the new shared area located
> at /gpfs/hps3/emc/meso/noscrub/emc.metplus/met. That area does not
have
> 9.0.3, but does have the latest stable release, 9.1.
>
> To load you would run:
>
> > module use /gpfs/hps3/emc/meso/noscrub/emc.metplus/modulefiles
> > module load met/9.1
>
> You can find this information on our Existing Builds page for each
version,
> which you can find a link to on our MET download page
> <https://dtcenter.org/community-code/model-evaluation-tools-
met/download>.
>
> If possible, we would suggest using version 9.1 in the new area.
> Eventually, all of the versions in
> the /gpfs/hps3/emc/global/noscrub/Julie.Prestopnik/met area will be
> removed.
>
> I did take a look at the modulefile
> for /gpfs/hps3/emc/global/noscrub/Julie.Prestopnik/9.0.3 and it is
not
> using an HDF5 module that is available as a module, but is using its
own
> version of HDF5 that was built when MET was built. Perhaps you
already had
> a different version loaded and there is a conflict? If you would
like to
> continue to use this version, I suggest clearing out your
environment (or
> at least any existing NetCDF and HDF5 modules that are loaded) and
trying
> again. METv9.1 in the new shared emc.metplus area does load an
available
> module of HDF5, which is "HDF5-serial-intel-sandybridge/1.8.9".
>
> I hope that helps. Please let us know how it goes. If you continue
to
> experience problems, please send the error that you receive and
we'll help
> get it figured out.
>
> Julie
>
>
>
> On Tue, Nov 10, 2020 at 7:28 AM Donald Lippi - NOAA Affiliate via RT
<
> met_help at ucar.edu> wrote:
>
> >
> > Tue Nov 10 07:28:53 2020: Request 97395 was acted upon.
> > Transaction: Ticket created by donald.e.lippi at noaa.gov
> > Queue: met_help
> > Subject: HDF5 on WCOSS cray for met/9.0.3
> > Owner: Nobody
> > Requestors: donald.e.lippi at noaa.gov
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97395 >
> >
> >
> > Hi Met Help,
> > I just switched to met/9.0.3 and I'm getting errors related to the
> version
> > of HDF5. I believe the version that is getting loaded from me is
> > hdf5/1.8.16 and I think it needs to be 1.8.18, however, I cannot
find
> where
> > to load that version on the cray. Any help would be appreciated.
> >
> > Thanks
> > Donnie
> > --
> >
> > Donald Lippi
> >
> > *IMSG* at NOAA/NWS/NCEP/EMC
> >
> >
>
> --
> Julie Prestopnik (she/her/hers)
> Software Engineer
> National Center for Atmospheric Research
> Research Applications Laboratory
> Email: jpresto at ucar.edu
>
> My working day may not be your working day. Please do not feel
obliged to
> reply to this email outside of your normal working hours.
>
>
--
Donald Lippi
*IMSG* at NOAA/NWS/NCEP/EMC
------------------------------------------------
Subject: HDF5 on WCOSS cray for met/9.0.3
From: Julie Prestopnik
Time: Tue Nov 10 09:18:18 2020
Great news! Thank you for letting us know. I'll go ahead and close
this
ticket, but please feel free to open a new one with any new issues.
Julie
On Tue, Nov 10, 2020 at 8:39 AM Donald Lippi - NOAA Affiliate via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97395 >
>
> Thanks. I switched to 9.1 and it looks like it is working.
>
> On Tue, Nov 10, 2020 at 9:56 AM Julie Prestopnik via RT
<met_help at ucar.edu
> >
> wrote:
>
> > Hi Donnie.
> >
> > I see that you are having trouble loading met version 9.0.3 due to
HDF5
> > problems. We are encouraging our users to no longer use the
versions of
> > met located at /gpfs/hps3/emc/global/noscrub/Julie.Prestopnik/met,
but to
> > instead use the new shared area located
> > at /gpfs/hps3/emc/meso/noscrub/emc.metplus/met. That area does
not have
> > 9.0.3, but does have the latest stable release, 9.1.
> >
> > To load you would run:
> >
> > > module use /gpfs/hps3/emc/meso/noscrub/emc.metplus/modulefiles
> > > module load met/9.1
> >
> > You can find this information on our Existing Builds page for each
> version,
> > which you can find a link to on our MET download page
> > <https://dtcenter.org/community-code/model-evaluation-tools-
met/download
> >.
> >
> > If possible, we would suggest using version 9.1 in the new area.
> > Eventually, all of the versions in
> > the /gpfs/hps3/emc/global/noscrub/Julie.Prestopnik/met area will
be
> > removed.
> >
> > I did take a look at the modulefile
> > for /gpfs/hps3/emc/global/noscrub/Julie.Prestopnik/9.0.3 and it is
not
> > using an HDF5 module that is available as a module, but is using
its own
> > version of HDF5 that was built when MET was built. Perhaps you
already
> had
> > a different version loaded and there is a conflict? If you would
like to
> > continue to use this version, I suggest clearing out your
environment (or
> > at least any existing NetCDF and HDF5 modules that are loaded) and
trying
> > again. METv9.1 in the new shared emc.metplus area does load an
available
> > module of HDF5, which is "HDF5-serial-intel-sandybridge/1.8.9".
> >
> > I hope that helps. Please let us know how it goes. If you
continue to
> > experience problems, please send the error that you receive and
we'll
> help
> > get it figured out.
> >
> > Julie
> >
> >
> >
> > On Tue, Nov 10, 2020 at 7:28 AM Donald Lippi - NOAA Affiliate via
RT <
> > met_help at ucar.edu> wrote:
> >
> > >
> > > Tue Nov 10 07:28:53 2020: Request 97395 was acted upon.
> > > Transaction: Ticket created by donald.e.lippi at noaa.gov
> > > Queue: met_help
> > > Subject: HDF5 on WCOSS cray for met/9.0.3
> > > Owner: Nobody
> > > Requestors: donald.e.lippi at noaa.gov
> > > Status: new
> > > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=97395
> >
> > >
> > >
> > > Hi Met Help,
> > > I just switched to met/9.0.3 and I'm getting errors related to
the
> > version
> > > of HDF5. I believe the version that is getting loaded from me is
> > > hdf5/1.8.16 and I think it needs to be 1.8.18, however, I cannot
find
> > where
> > > to load that version on the cray. Any help would be appreciated.
> > >
> > > Thanks
> > > Donnie
> > > --
> > >
> > > Donald Lippi
> > >
> > > *IMSG* at NOAA/NWS/NCEP/EMC
> > >
> > >
> >
> > --
> > Julie Prestopnik (she/her/hers)
> > Software Engineer
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Email: jpresto at ucar.edu
> >
> > My working day may not be your working day. Please do not feel
obliged
> to
> > reply to this email outside of your normal working hours.
> >
> >
>
> --
>
> Donald Lippi
>
> *IMSG* at NOAA/NWS/NCEP/EMC
>
>
--
Julie Prestopnik (she/her/hers)
Software Engineer
National Center for Atmospheric Research
Research Applications Laboratory
Email: jpresto at ucar.edu
My working day may not be your working day. Please do not feel
obliged to
reply to this email outside of your normal working hours.
------------------------------------------------
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