[Met_help] [rt.rap.ucar.edu #90091] History for Help regarding MET 8.1 Julie Prestopnik
John Halley Gotway via RT
met_help at ucar.edu
Wed Jul 10 16:59:49 MDT 2019
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda 2.4.0. The user asked for 8.1. I took notes last time, but running into problems:
MET Configuration settings...
export MET_FONT_DIR=/software/depot/met-8.1/fonts
export MET_FREETYPEINC=/software/depot/met-8.1/external_libs/include/freetype2
export MET_CAIROINC=/software/depot/met-8.1/external_libs/include/cairo
export MET_GSL=/software/depot/met-8.1/external_libs
export MET_PYTHON_CC=-I/software/depot/anaconda-2.4.0/include/python2.7 -I/software/depot/anaconda-2.4.0/include/python2.7 -fno-strict-aliasing -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
export MET_HDF=/software/depot/met-8.1/external_libs
export MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-8.1/tar_files.tar
export MET_HDFEOS=/software/depot/met-8.1/external_libs
export MET_NETCDF=/software/depot/met-8.1/external_libs
export MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
export MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm -Xlinker -export-dynamic
export MET_GRIB2C=/software/depot/met-8.1/external_libs
export MET_SUBDIR=/software/depot/met-8.1/met-8.1
export MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
cd /software/depot/met-8.1/met-8.1
./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-grib2 --enable-modis --enable-mode_graphics --enable-lidar2nc > configure.log 2>&1
configure returned with non-zero (127) status
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: John Halley Gotway
Time: Mon May 06 17:02:49 2019
Hi Greg,
I'll go ahead and assign this ticket to Julie, and she should be
writing
you back in the next couple of days.
I do know she'll want to see both the "configure.log" file you
generated as
well as the "config.log" file from that same directory. So please
send
those along when you get a chance.
Thanks,
John
On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> Transaction: Ticket created by Greg.Ramos.ctr at nrlmry.navy.mil
> Queue: met_help
> Subject: Help regarding MET 8.1 Julie Prestopnik
> Owner: Nobody
> Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
>
> Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda 2.4.0. The
user
> asked for 8.1. I took notes last time, but running into problems:
>
> MET Configuration settings...
> export MET_FONT_DIR=/software/depot/met-8.1/fonts
> export
> MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> export MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> export MET_GSL=/software/depot/met-8.1/external_libs
> export MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> -I/software/depot/anaconda-2.4.0/include/python2.7 -fno-strict-
aliasing
> -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
> export MET_HDF=/software/depot/met-8.1/external_libs
> export
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> export MET_HDFEOS=/software/depot/met-8.1/external_libs
> export MET_NETCDF=/software/depot/met-8.1/external_libs
> export MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> export MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm -Xlinker
> -export-dynamic
> export MET_GRIB2C=/software/depot/met-8.1/external_libs
> export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> export MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
> cd /software/depot/met-8.1/met-8.1
> ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-grib2
> --enable-modis --enable-mode_graphics --enable-lidar2nc >
configure.log
> 2>&1
> configure returned with non-zero (127) status
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Mon May 06 17:04:48 2019
Yes, I will. Do you require a certain version of GCC? I forgot one
steo, setting LD_LIBRARY_PATH, but still have the following errors:
/software/depot/gcc-
6.3.0/include/c++/6.3.0/bits/basic_string.h:5325:5: note: candidate:
template<class _CharT, class _Traits, class _Alloc>
std::basic_ostream<_CharT, _Traits>&
std::operator<<(std::basic_ostream<_CharT, _Traits>&, const
std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&)
operator<<(basic_ostream<_CharT, _Traits>& __os,
^~~~~~~~
/software/depot/gcc-
6.3.0/include/c++/6.3.0/bits/basic_string.h:5325:5: note: template
argument deduction/substitution failed:
data_line.cc:218:21: note: âstd::ostringstream {aka
std::__cxx11::basic_ostringstream<char>}â is not derived from âconst
std::__cxx11::basic_string<_CharT, _Traits, _Alloc>â
out << prefix << sstream << Offset[j] << "\n";
^~~~~~~
data_line.cc: In member function âint LineDataFile::open(const
char*)â:
data_line.cc:703:5: warning: unused variable âjâ [-Wunused-variable]
int j, n;
^
data_line.cc: In function âstd::ostream& operator<<(std::ostream&,
const DataLine&)â:
data_line.cc:879:15: warning: comparison between signed and unsigned
integer expressions [-Wsign-compare]
for (j = 0; j < L.Items.size(); j++) {
~~^~~~~~~~~~~~~~~~
data_line.cc:881:11: warning: comparison between signed and unsigned
integer expressions [-Wsign-compare]
if (j < (L.Items.size() - 1))
~~^~~~~~~~~~~~~~~~~~~~~~
data_line.cc: In function âLogger& operator<<(Logger&, const
DataLine&)â:
data_line.cc:924:15: warning: comparison between signed and unsigned
integer expressions [-Wsign-compare]
for (j = 0; j < L.Items.size(); j++) {
~~^~~~~~~~~~~~~~~~
data_line.cc:926:11: warning: comparison between signed and unsigned
integer expressions [-Wsign-compare]
if (j < (L.Items.size() - 1))
~~^~~~~~~~~~~~~~~~~~~~~~
data_line.cc:903:8: warning: unused variable âkâ [-Wunused-variable]
int j, k, N;
^
data_line.cc:903:11: warning: unused variable âNâ [-Wunused-variable]
int j, k, N;
^
data_line.cc:904:6: warning: unused variable âcâ [-Wunused-variable]
char c;
^
make[4]: *** [libvx_util_a-data_line.o] Error 1
make[4]: Leaving directory `/users/ramos/met-8.1/met-
8.1/src/basic/vx_util'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory `/users/ramos/met-8.1/met-8.1/src/basic'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/users/ramos/met-8.1/met-8.1/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/users/ramos/met-8.1/met-8.1'
make: *** [all] Error 2
[ramos at predict met-8.1]$
-----Original Message-----
From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
Sent: Monday, May 6, 2019 4:03 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Hi Greg,
I'll go ahead and assign this ticket to Julie, and she should be
writing
you back in the next couple of days.
I do know she'll want to see both the "configure.log" file you
generated as
well as the "config.log" file from that same directory. So please
send
those along when you get a chance.
Thanks,
John
On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> Transaction: Ticket created by Greg.Ramos.ctr at nrlmry.navy.mil
> Queue: met_help
> Subject: Help regarding MET 8.1 Julie Prestopnik
> Owner: Nobody
> Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
>
> Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda 2.4.0. The
user
> asked for 8.1. I took notes last time, but running into problems:
>
> MET Configuration settings...
> export MET_FONT_DIR=/software/depot/met-8.1/fonts
> export
> MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> export MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> export MET_GSL=/software/depot/met-8.1/external_libs
> export MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> -I/software/depot/anaconda-2.4.0/include/python2.7 -fno-strict-
aliasing
> -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
> export MET_HDF=/software/depot/met-8.1/external_libs
> export
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> export MET_HDFEOS=/software/depot/met-8.1/external_libs
> export MET_NETCDF=/software/depot/met-8.1/external_libs
> export MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> export MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm -Xlinker
> -export-dynamic
> export MET_GRIB2C=/software/depot/met-8.1/external_libs
> export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> export MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
> cd /software/depot/met-8.1/met-8.1
> ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-grib2
> --enable-modis --enable-mode_graphics --enable-lidar2nc >
configure.log
> 2>&1
> configure returned with non-zero (127) status
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Mon May 06 17:09:42 2019
Configure.log has no meaningful info:
[ramos at predict met-8.1]$ more configure.log
-bash: [ramos at predict: command not found
[ramos at predict met-8.1]$
-----Original Message-----
From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
Sent: Monday, May 6, 2019 4:03 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Hi Greg,
I'll go ahead and assign this ticket to Julie, and she should be
writing
you back in the next couple of days.
I do know she'll want to see both the "configure.log" file you
generated as
well as the "config.log" file from that same directory. So please
send
those along when you get a chance.
Thanks,
John
On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> Transaction: Ticket created by Greg.Ramos.ctr at nrlmry.navy.mil
> Queue: met_help
> Subject: Help regarding MET 8.1 Julie Prestopnik
> Owner: Nobody
> Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
>
> Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda 2.4.0. The
user
> asked for 8.1. I took notes last time, but running into problems:
>
> MET Configuration settings...
> export MET_FONT_DIR=/software/depot/met-8.1/fonts
> export
> MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> export MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> export MET_GSL=/software/depot/met-8.1/external_libs
> export MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> -I/software/depot/anaconda-2.4.0/include/python2.7 -fno-strict-
aliasing
> -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
> export MET_HDF=/software/depot/met-8.1/external_libs
> export
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> export MET_HDFEOS=/software/depot/met-8.1/external_libs
> export MET_NETCDF=/software/depot/met-8.1/external_libs
> export MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> export MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm -Xlinker
> -export-dynamic
> export MET_GRIB2C=/software/depot/met-8.1/external_libs
> export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> export MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
> cd /software/depot/met-8.1/met-8.1
> ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-grib2
> --enable-modis --enable-mode_graphics --enable-lidar2nc >
configure.log
> 2>&1
> configure returned with non-zero (127) status
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Julie Prestopnik
Time: Tue May 07 09:21:43 2019
Hi Greg. Thank you for passing along your config.log file. I see a
couple
of linker problems in there:
/usr/bin/ld: cannot find -lfl
/usr/bin/ld: cannot find -ll
Based on those errors, it looks like you may not have flex and bison
installed. Please install those and try running configure again.
Please
let us know how it goes.
Also, I just wanted to address one other thing. In your original
email you
listed the following as part of your "MET Configuration settings":
export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm -Xlinker
-export-dynamic
However, in your config.log file it looks like MET_PYTHON_LD was
actually
set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7 -lpthread
-ldl
-lutil -lm -Xlinker -export-dynamic", which is correct because you
need to
have that -L part in there, so I just want to ensure that will stay
there
when you run configure again.
Thanks,
Julie
On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> Configure.log has no meaningful info:
>
> [ramos at predict met-8.1]$ more configure.log
> -bash: [ramos at predict: command not found
> [ramos at predict met-8.1]$
>
>
> -----Original Message-----
> From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 6, 2019 4:03 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hi Greg,
>
> I'll go ahead and assign this ticket to Julie, and she should be
writing
> you back in the next couple of days.
>
> I do know she'll want to see both the "configure.log" file you
generated as
> well as the "config.log" file from that same directory. So please
send
> those along when you get a chance.
>
> Thanks,
> John
>
> On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> > Transaction: Ticket created by Greg.Ramos.ctr at nrlmry.navy.mil
> > Queue: met_help
> > Subject: Help regarding MET 8.1 Julie Prestopnik
> > Owner: Nobody
> > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> >
> > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda 2.4.0.
The user
> > asked for 8.1. I took notes last time, but running into problems:
> >
> > MET Configuration settings...
> > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > export
> > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > export MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > export MET_GSL=/software/depot/met-8.1/external_libs
> > export MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > -I/software/depot/anaconda-2.4.0/include/python2.7 -fno-strict-
aliasing
> > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
> > export MET_HDF=/software/depot/met-8.1/external_libs
> > export
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> > export MET_NETCDF=/software/depot/met-8.1/external_libs
> > export MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > export MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> > -export-dynamic
> > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > export MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
> > cd /software/depot/met-8.1/met-8.1
> > ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2
> > --enable-modis --enable-mode_graphics --enable-lidar2nc >
configure.log
> > 2>&1
> > configure returned with non-zero (127) status
> >
> >
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Tue May 07 10:02:37 2019
OK, here is my new config.log after installing bison and flex. I must
have tried this on another machine before.
Greg
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Tuesday, May 7, 2019 8:22 AM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Hi Greg. Thank you for passing along your config.log file. I see a
couple
of linker problems in there:
/usr/bin/ld: cannot find -lfl
/usr/bin/ld: cannot find -ll
Based on those errors, it looks like you may not have flex and bison
installed. Please install those and try running configure again.
Please
let us know how it goes.
Also, I just wanted to address one other thing. In your original
email you
listed the following as part of your "MET Configuration settings":
export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm -Xlinker
-export-dynamic
However, in your config.log file it looks like MET_PYTHON_LD was
actually
set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7 -lpthread
-ldl
-lutil -lm -Xlinker -export-dynamic", which is correct because you
need to
have that -L part in there, so I just want to ensure that will stay
there
when you run configure again.
Thanks,
Julie
On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> Configure.log has no meaningful info:
>
> [ramos at predict met-8.1]$ more configure.log
> -bash: [ramos at predict: command not found
> [ramos at predict met-8.1]$
>
>
> -----Original Message-----
> From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 6, 2019 4:03 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hi Greg,
>
> I'll go ahead and assign this ticket to Julie, and she should be
writing
> you back in the next couple of days.
>
> I do know she'll want to see both the "configure.log" file you
generated as
> well as the "config.log" file from that same directory. So please
send
> those along when you get a chance.
>
> Thanks,
> John
>
> On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> > Transaction: Ticket created by Greg.Ramos.ctr at nrlmry.navy.mil
> > Queue: met_help
> > Subject: Help regarding MET 8.1 Julie Prestopnik
> > Owner: Nobody
> > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> >
> > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda 2.4.0.
The user
> > asked for 8.1. I took notes last time, but running into problems:
> >
> > MET Configuration settings...
> > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > export
> > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > export MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > export MET_GSL=/software/depot/met-8.1/external_libs
> > export MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > -I/software/depot/anaconda-2.4.0/include/python2.7 -fno-strict-
aliasing
> > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
> > export MET_HDF=/software/depot/met-8.1/external_libs
> > export
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> > export MET_NETCDF=/software/depot/met-8.1/external_libs
> > export MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > export MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> > -export-dynamic
> > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > export MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
> > cd /software/depot/met-8.1/met-8.1
> > ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2
> > --enable-modis --enable-mode_graphics --enable-lidar2nc >
configure.log
> > 2>&1
> > configure returned with non-zero (127) status
> >
> >
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Tue May 07 10:26:07 2019
Attached find the output of make.
Greg
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Tuesday, May 7, 2019 8:22 AM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Hi Greg. Thank you for passing along your config.log file. I see a
couple
of linker problems in there:
/usr/bin/ld: cannot find -lfl
/usr/bin/ld: cannot find -ll
Based on those errors, it looks like you may not have flex and bison
installed. Please install those and try running configure again.
Please
let us know how it goes.
Also, I just wanted to address one other thing. In your original
email you
listed the following as part of your "MET Configuration settings":
export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm -Xlinker
-export-dynamic
However, in your config.log file it looks like MET_PYTHON_LD was
actually
set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7 -lpthread
-ldl
-lutil -lm -Xlinker -export-dynamic", which is correct because you
need to
have that -L part in there, so I just want to ensure that will stay
there
when you run configure again.
Thanks,
Julie
On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> Configure.log has no meaningful info:
>
> [ramos at predict met-8.1]$ more configure.log
> -bash: [ramos at predict: command not found
> [ramos at predict met-8.1]$
>
>
> -----Original Message-----
> From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 6, 2019 4:03 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hi Greg,
>
> I'll go ahead and assign this ticket to Julie, and she should be
writing
> you back in the next couple of days.
>
> I do know she'll want to see both the "configure.log" file you
generated as
> well as the "config.log" file from that same directory. So please
send
> those along when you get a chance.
>
> Thanks,
> John
>
> On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> > Transaction: Ticket created by Greg.Ramos.ctr at nrlmry.navy.mil
> > Queue: met_help
> > Subject: Help regarding MET 8.1 Julie Prestopnik
> > Owner: Nobody
> > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> >
> > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda 2.4.0.
The user
> > asked for 8.1. I took notes last time, but running into problems:
> >
> > MET Configuration settings...
> > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > export
> > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > export MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > export MET_GSL=/software/depot/met-8.1/external_libs
> > export MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > -I/software/depot/anaconda-2.4.0/include/python2.7 -fno-strict-
aliasing
> > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
> > export MET_HDF=/software/depot/met-8.1/external_libs
> > export
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> > export MET_NETCDF=/software/depot/met-8.1/external_libs
> > export MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > export MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> > -export-dynamic
> > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > export MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
> > cd /software/depot/met-8.1/met-8.1
> > ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2
> > --enable-modis --enable-mode_graphics --enable-lidar2nc >
configure.log
> > 2>&1
> > configure returned with non-zero (127) status
> >
> >
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Tue May 07 10:55:25 2019
BTW, these are my exports:
export TEST_BASE=/software/depot/met-8.1
export COMPILER=gnu
export MET_SUBDIR=/software/depot/met-8.1/met-8.1
export MET_TARBALL=/software/depot/met-8.1/tar_files.tar
export PATH=/software/depot/met-8.1/external_libs/bin:$PATH
export LD_LIBRARY_PATH=/software/depot/met-
8.1/external_libs/lib:$LD_LIBRARY_PATH
export PKG_CONFIG_PATH=/software/depot/met-
8.1/external_libs/lib/pkgconfig
export MET_PYTHON_CC=`/software/depot/anaconda-2.4.0/bin/python-config
--cflags`
export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
-lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-dynamic
export LD_LIBRARY_PATH=/software/depot/anaconda-
2.4.0/lib:${LD_LIBRARY_PATH}
export PYTHON_MODULE_USE=/software/Modules/modulefiles
export LD_LIBRARY_PATH=/software/depot/anaconda-
2.4.0/lib:$LD_LIBRARY_PATH
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Tuesday, May 7, 2019 8:22 AM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Hi Greg. Thank you for passing along your config.log file. I see a
couple
of linker problems in there:
/usr/bin/ld: cannot find -lfl
/usr/bin/ld: cannot find -ll
Based on those errors, it looks like you may not have flex and bison
installed. Please install those and try running configure again.
Please
let us know how it goes.
Also, I just wanted to address one other thing. In your original
email you
listed the following as part of your "MET Configuration settings":
export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm -Xlinker
-export-dynamic
However, in your config.log file it looks like MET_PYTHON_LD was
actually
set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7 -lpthread
-ldl
-lutil -lm -Xlinker -export-dynamic", which is correct because you
need to
have that -L part in there, so I just want to ensure that will stay
there
when you run configure again.
Thanks,
Julie
On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> Configure.log has no meaningful info:
>
> [ramos at predict met-8.1]$ more configure.log
> -bash: [ramos at predict: command not found
> [ramos at predict met-8.1]$
>
>
> -----Original Message-----
> From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 6, 2019 4:03 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hi Greg,
>
> I'll go ahead and assign this ticket to Julie, and she should be
writing
> you back in the next couple of days.
>
> I do know she'll want to see both the "configure.log" file you
generated as
> well as the "config.log" file from that same directory. So please
send
> those along when you get a chance.
>
> Thanks,
> John
>
> On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> > Transaction: Ticket created by Greg.Ramos.ctr at nrlmry.navy.mil
> > Queue: met_help
> > Subject: Help regarding MET 8.1 Julie Prestopnik
> > Owner: Nobody
> > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> >
> > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda 2.4.0.
The user
> > asked for 8.1. I took notes last time, but running into problems:
> >
> > MET Configuration settings...
> > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > export
> > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > export MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > export MET_GSL=/software/depot/met-8.1/external_libs
> > export MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > -I/software/depot/anaconda-2.4.0/include/python2.7 -fno-strict-
aliasing
> > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
> > export MET_HDF=/software/depot/met-8.1/external_libs
> > export
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> > export MET_NETCDF=/software/depot/met-8.1/external_libs
> > export MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > export MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> > -export-dynamic
> > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > export MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
> > cd /software/depot/met-8.1/met-8.1
> > ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2
> > --enable-modis --enable-mode_graphics --enable-lidar2nc >
configure.log
> > 2>&1
> > configure returned with non-zero (127) status
> >
> >
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Tue May 07 14:58:39 2019
Did you have any other ideas?
Greg
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Tuesday, May 7, 2019 8:22 AM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Hi Greg. Thank you for passing along your config.log file. I see a
couple
of linker problems in there:
/usr/bin/ld: cannot find -lfl
/usr/bin/ld: cannot find -ll
Based on those errors, it looks like you may not have flex and bison
installed. Please install those and try running configure again.
Please
let us know how it goes.
Also, I just wanted to address one other thing. In your original
email you
listed the following as part of your "MET Configuration settings":
export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm -Xlinker
-export-dynamic
However, in your config.log file it looks like MET_PYTHON_LD was
actually
set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7 -lpthread
-ldl
-lutil -lm -Xlinker -export-dynamic", which is correct because you
need to
have that -L part in there, so I just want to ensure that will stay
there
when you run configure again.
Thanks,
Julie
On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> Configure.log has no meaningful info:
>
> [ramos at predict met-8.1]$ more configure.log
> -bash: [ramos at predict: command not found
> [ramos at predict met-8.1]$
>
>
> -----Original Message-----
> From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 6, 2019 4:03 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hi Greg,
>
> I'll go ahead and assign this ticket to Julie, and she should be
writing
> you back in the next couple of days.
>
> I do know she'll want to see both the "configure.log" file you
generated as
> well as the "config.log" file from that same directory. So please
send
> those along when you get a chance.
>
> Thanks,
> John
>
> On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> > Transaction: Ticket created by Greg.Ramos.ctr at nrlmry.navy.mil
> > Queue: met_help
> > Subject: Help regarding MET 8.1 Julie Prestopnik
> > Owner: Nobody
> > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> >
> > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda 2.4.0.
The user
> > asked for 8.1. I took notes last time, but running into problems:
> >
> > MET Configuration settings...
> > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > export
> > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > export MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > export MET_GSL=/software/depot/met-8.1/external_libs
> > export MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > -I/software/depot/anaconda-2.4.0/include/python2.7 -fno-strict-
aliasing
> > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
> > export MET_HDF=/software/depot/met-8.1/external_libs
> > export
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> > export MET_NETCDF=/software/depot/met-8.1/external_libs
> > export MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > export MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> > -export-dynamic
> > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > export MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
> > cd /software/depot/met-8.1/met-8.1
> > ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2
> > --enable-modis --enable-mode_graphics --enable-lidar2nc >
configure.log
> > 2>&1
> > configure returned with non-zero (127) status
> >
> >
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Julie Prestopnik
Time: Tue May 07 15:06:35 2019
Hi Gregory. My apologies - I have been in meetings most of the day
and
have not had an opportunity to revisit this ticket. I will get back
to you
as soon as I can.
Julie
On Tue, May 7, 2019 at 2:59 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> Did you have any other ideas?
>
> Greg
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Tuesday, May 7, 2019 8:22 AM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hi Greg. Thank you for passing along your config.log file. I see a
couple
> of linker problems in there:
>
> /usr/bin/ld: cannot find -lfl
>
> /usr/bin/ld: cannot find -ll
>
> Based on those errors, it looks like you may not have flex and bison
> installed. Please install those and try running configure again.
Please
> let us know how it goes.
>
> Also, I just wanted to address one other thing. In your original
email you
> listed the following as part of your "MET Configuration settings":
> export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm -Xlinker
> -export-dynamic
>
> However, in your config.log file it looks like MET_PYTHON_LD was
actually
> set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7
-lpthread -ldl
> -lutil -lm -Xlinker -export-dynamic", which is correct because you
need to
> have that -L part in there, so I just want to ensure that will stay
there
> when you run configure again.
>
> Thanks,
> Julie
>
> On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > Configure.log has no meaningful info:
> >
> > [ramos at predict met-8.1]$ more configure.log
> > -bash: [ramos at predict: command not found
> > [ramos at predict met-8.1]$
> >
> >
> > -----Original Message-----
> > From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 6, 2019 4:03 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Hi Greg,
> >
> > I'll go ahead and assign this ticket to Julie, and she should be
writing
> > you back in the next couple of days.
> >
> > I do know she'll want to see both the "configure.log" file you
generated
> as
> > well as the "config.log" file from that same directory. So please
send
> > those along when you get a chance.
> >
> > Thanks,
> > John
> >
> > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory, Contractor,
Code
> 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> > > Transaction: Ticket created by Greg.Ramos.ctr at nrlmry.navy.mil
> > > Queue: met_help
> > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > Owner: Nobody
> > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > Status: new
> > > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> >
> > >
> > >
> > > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda 2.4.0.
The
> user
> > > asked for 8.1. I took notes last time, but running into
problems:
> > >
> > > MET Configuration settings...
> > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > export
> > > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > > export MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > > export MET_GSL=/software/depot/met-8.1/external_libs
> > > export MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > > -I/software/depot/anaconda-2.4.0/include/python2.7 -fno-strict-
aliasing
> > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
> > > export MET_HDF=/software/depot/met-8.1/external_libs
> > > export
> > >
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> > > export MET_NETCDF=/software/depot/met-8.1/external_libs
> > > export MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > export MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> > > -export-dynamic
> > > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > export MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
> > > cd /software/depot/met-8.1/met-8.1
> > > ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2
> > > --enable-modis --enable-mode_graphics --enable-lidar2nc >
> configure.log
> > > 2>&1
> > > configure returned with non-zero (127) status
> > >
> > >
> >
> >
> >
>
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Tue May 07 15:17:09 2019
OK, thank you.
Greg
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Tuesday, May 7, 2019 2:07 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Hi Gregory. My apologies - I have been in meetings most of the day
and
have not had an opportunity to revisit this ticket. I will get back
to you
as soon as I can.
Julie
On Tue, May 7, 2019 at 2:59 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> Did you have any other ideas?
>
> Greg
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Tuesday, May 7, 2019 8:22 AM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hi Greg. Thank you for passing along your config.log file. I see a
couple
> of linker problems in there:
>
> /usr/bin/ld: cannot find -lfl
>
> /usr/bin/ld: cannot find -ll
>
> Based on those errors, it looks like you may not have flex and bison
> installed. Please install those and try running configure again.
Please
> let us know how it goes.
>
> Also, I just wanted to address one other thing. In your original
email you
> listed the following as part of your "MET Configuration settings":
> export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm -Xlinker
> -export-dynamic
>
> However, in your config.log file it looks like MET_PYTHON_LD was
actually
> set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7
-lpthread -ldl
> -lutil -lm -Xlinker -export-dynamic", which is correct because you
need to
> have that -L part in there, so I just want to ensure that will stay
there
> when you run configure again.
>
> Thanks,
> Julie
>
> On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > Configure.log has no meaningful info:
> >
> > [ramos at predict met-8.1]$ more configure.log
> > -bash: [ramos at predict: command not found
> > [ramos at predict met-8.1]$
> >
> >
> > -----Original Message-----
> > From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 6, 2019 4:03 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Hi Greg,
> >
> > I'll go ahead and assign this ticket to Julie, and she should be
writing
> > you back in the next couple of days.
> >
> > I do know she'll want to see both the "configure.log" file you
generated
> as
> > well as the "config.log" file from that same directory. So please
send
> > those along when you get a chance.
> >
> > Thanks,
> > John
> >
> > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory, Contractor,
Code
> 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> > > Transaction: Ticket created by Greg.Ramos.ctr at nrlmry.navy.mil
> > > Queue: met_help
> > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > Owner: Nobody
> > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > Status: new
> > > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> >
> > >
> > >
> > > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda 2.4.0.
The
> user
> > > asked for 8.1. I took notes last time, but running into
problems:
> > >
> > > MET Configuration settings...
> > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > export
> > > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > > export MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > > export MET_GSL=/software/depot/met-8.1/external_libs
> > > export MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > > -I/software/depot/anaconda-2.4.0/include/python2.7 -fno-strict-
aliasing
> > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
> > > export MET_HDF=/software/depot/met-8.1/external_libs
> > > export
> > >
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> > > export MET_NETCDF=/software/depot/met-8.1/external_libs
> > > export MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > export MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> > > -export-dynamic
> > > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > export MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
> > > cd /software/depot/met-8.1/met-8.1
> > > ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2
> > > --enable-modis --enable-mode_graphics --enable-lidar2nc >
> configure.log
> > > 2>&1
> > > configure returned with non-zero (127) status
> > >
> > >
> >
> >
> >
>
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Thu May 09 12:12:39 2019
Any updates or suggestions?
Greg
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Tuesday, May 7, 2019 8:22 AM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Hi Greg. Thank you for passing along your config.log file. I see a
couple
of linker problems in there:
/usr/bin/ld: cannot find -lfl
/usr/bin/ld: cannot find -ll
Based on those errors, it looks like you may not have flex and bison
installed. Please install those and try running configure again.
Please
let us know how it goes.
Also, I just wanted to address one other thing. In your original
email you
listed the following as part of your "MET Configuration settings":
export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm -Xlinker
-export-dynamic
However, in your config.log file it looks like MET_PYTHON_LD was
actually
set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7 -lpthread
-ldl
-lutil -lm -Xlinker -export-dynamic", which is correct because you
need to
have that -L part in there, so I just want to ensure that will stay
there
when you run configure again.
Thanks,
Julie
On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> Configure.log has no meaningful info:
>
> [ramos at predict met-8.1]$ more configure.log
> -bash: [ramos at predict: command not found
> [ramos at predict met-8.1]$
>
>
> -----Original Message-----
> From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 6, 2019 4:03 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hi Greg,
>
> I'll go ahead and assign this ticket to Julie, and she should be
writing
> you back in the next couple of days.
>
> I do know she'll want to see both the "configure.log" file you
generated as
> well as the "config.log" file from that same directory. So please
send
> those along when you get a chance.
>
> Thanks,
> John
>
> On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> > Transaction: Ticket created by Greg.Ramos.ctr at nrlmry.navy.mil
> > Queue: met_help
> > Subject: Help regarding MET 8.1 Julie Prestopnik
> > Owner: Nobody
> > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> >
> > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda 2.4.0.
The user
> > asked for 8.1. I took notes last time, but running into problems:
> >
> > MET Configuration settings...
> > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > export
> > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > export MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > export MET_GSL=/software/depot/met-8.1/external_libs
> > export MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > -I/software/depot/anaconda-2.4.0/include/python2.7 -fno-strict-
aliasing
> > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
> > export MET_HDF=/software/depot/met-8.1/external_libs
> > export
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> > export MET_NETCDF=/software/depot/met-8.1/external_libs
> > export MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > export MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> > -export-dynamic
> > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > export MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
> > cd /software/depot/met-8.1/met-8.1
> > ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2
> > --enable-modis --enable-mode_graphics --enable-lidar2nc >
configure.log
> > 2>&1
> > configure returned with non-zero (127) status
> >
> >
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Julie Prestopnik
Time: Thu May 09 14:04:53 2019
Hi Gregory. I have not tested with version 6.3.0 of the gcc compiler,
but
rather only with lower versions (specifically 4.8.5). We would, of
course,
want our code to work with higher versions as well. I have not yet
had an
opportunity to test with a higher version like 6.3.0. Do you have the
ability to compile MET using a lesser version of the gcc compiler to
see if
that clears up the issues you are experiencing?
Julie
On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> Any updates or suggestions?
>
> Greg
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Tuesday, May 7, 2019 8:22 AM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hi Greg. Thank you for passing along your config.log file. I see a
couple
> of linker problems in there:
>
> /usr/bin/ld: cannot find -lfl
>
> /usr/bin/ld: cannot find -ll
>
> Based on those errors, it looks like you may not have flex and bison
> installed. Please install those and try running configure again.
Please
> let us know how it goes.
>
> Also, I just wanted to address one other thing. In your original
email you
> listed the following as part of your "MET Configuration settings":
> export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm -Xlinker
> -export-dynamic
>
> However, in your config.log file it looks like MET_PYTHON_LD was
actually
> set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7
-lpthread -ldl
> -lutil -lm -Xlinker -export-dynamic", which is correct because you
need to
> have that -L part in there, so I just want to ensure that will stay
there
> when you run configure again.
>
> Thanks,
> Julie
>
> On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > Configure.log has no meaningful info:
> >
> > [ramos at predict met-8.1]$ more configure.log
> > -bash: [ramos at predict: command not found
> > [ramos at predict met-8.1]$
> >
> >
> > -----Original Message-----
> > From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 6, 2019 4:03 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Hi Greg,
> >
> > I'll go ahead and assign this ticket to Julie, and she should be
writing
> > you back in the next couple of days.
> >
> > I do know she'll want to see both the "configure.log" file you
generated
> as
> > well as the "config.log" file from that same directory. So please
send
> > those along when you get a chance.
> >
> > Thanks,
> > John
> >
> > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory, Contractor,
Code
> 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> > > Transaction: Ticket created by Greg.Ramos.ctr at nrlmry.navy.mil
> > > Queue: met_help
> > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > Owner: Nobody
> > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > Status: new
> > > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> >
> > >
> > >
> > > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda 2.4.0.
The
> user
> > > asked for 8.1. I took notes last time, but running into
problems:
> > >
> > > MET Configuration settings...
> > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > export
> > > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > > export MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > > export MET_GSL=/software/depot/met-8.1/external_libs
> > > export MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > > -I/software/depot/anaconda-2.4.0/include/python2.7 -fno-strict-
aliasing
> > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
> > > export MET_HDF=/software/depot/met-8.1/external_libs
> > > export
> > >
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> > > export MET_NETCDF=/software/depot/met-8.1/external_libs
> > > export MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > export MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> > > -export-dynamic
> > > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > export MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
> > > cd /software/depot/met-8.1/met-8.1
> > > ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2
> > > --enable-modis --enable-mode_graphics --enable-lidar2nc >
> configure.log
> > > 2>&1
> > > configure returned with non-zero (127) status
> > >
> > >
> >
> >
> >
>
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Thu May 09 14:17:37 2019
When I compiled MET 8.0 the last time, it worked. I was also able to
compile 8.0 on out Cray:
[root at maury ramos]# ssh ramos at leo1
Password:
Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
*** Welcome to Cray eLogin Server ***
Running 132MB Suse 12.3
16 vcores, boot_memtotal: 257916mb
You are accessing a U.S. Government (USG) Information System (IS) that
is provided for USG-authorized use only.
By using this IS (which includes any device attached to this IS), you
consent to the following conditions:
-The USG routinely intercepts and monitors communications on this IS
for purposes including, but not limited to,
penetration testing, COMSEC monitoring, network operations and
defense, personnel misconduct (PM), law enforcement (LE),
and counterintelligence (CI) investigations.
-At any time, the USG may inspect and seize data stored on this IS.
-Communications using, or data stored on, this IS are not private, are
subject to routine monitoring, interception,
and search, and may be disclosed or used for any USG-authorized
purpose.
-This IS includes security measures (e.g., authentication and access
controls) to protect USG interests -- not for
your personal benefit or privacy.
-Notwithstanding the above, using this IS does not constitute consent
to PM, LE or CI investigative searching or
monitoring of the content of privileged communications, or work
product, related to personal representation or
services by attorneys, psychotherapists, or clergy, and their
assistants. Such communications and work product are
private and confidential. See User Agreement for details.
ramos at leo1:~> which gcc
/opt/gcc/7.3.0/bin/gcc
ramos at leo1:~>
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Thursday, May 9, 2019 1:05 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Hi Gregory. I have not tested with version 6.3.0 of the gcc compiler,
but
rather only with lower versions (specifically 4.8.5). We would, of
course,
want our code to work with higher versions as well. I have not yet
had an
opportunity to test with a higher version like 6.3.0. Do you have the
ability to compile MET using a lesser version of the gcc compiler to
see if
that clears up the issues you are experiencing?
Julie
On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> Any updates or suggestions?
>
> Greg
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Tuesday, May 7, 2019 8:22 AM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hi Greg. Thank you for passing along your config.log file. I see a
couple
> of linker problems in there:
>
> /usr/bin/ld: cannot find -lfl
>
> /usr/bin/ld: cannot find -ll
>
> Based on those errors, it looks like you may not have flex and bison
> installed. Please install those and try running configure again.
Please
> let us know how it goes.
>
> Also, I just wanted to address one other thing. In your original
email you
> listed the following as part of your "MET Configuration settings":
> export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm -Xlinker
> -export-dynamic
>
> However, in your config.log file it looks like MET_PYTHON_LD was
actually
> set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7
-lpthread -ldl
> -lutil -lm -Xlinker -export-dynamic", which is correct because you
need to
> have that -L part in there, so I just want to ensure that will stay
there
> when you run configure again.
>
> Thanks,
> Julie
>
> On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > Configure.log has no meaningful info:
> >
> > [ramos at predict met-8.1]$ more configure.log
> > -bash: [ramos at predict: command not found
> > [ramos at predict met-8.1]$
> >
> >
> > -----Original Message-----
> > From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 6, 2019 4:03 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Hi Greg,
> >
> > I'll go ahead and assign this ticket to Julie, and she should be
writing
> > you back in the next couple of days.
> >
> > I do know she'll want to see both the "configure.log" file you
generated
> as
> > well as the "config.log" file from that same directory. So please
send
> > those along when you get a chance.
> >
> > Thanks,
> > John
> >
> > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory, Contractor,
Code
> 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> > > Transaction: Ticket created by Greg.Ramos.ctr at nrlmry.navy.mil
> > > Queue: met_help
> > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > Owner: Nobody
> > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > Status: new
> > > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> >
> > >
> > >
> > > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda 2.4.0.
The
> user
> > > asked for 8.1. I took notes last time, but running into
problems:
> > >
> > > MET Configuration settings...
> > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > export
> > > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > > export MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > > export MET_GSL=/software/depot/met-8.1/external_libs
> > > export MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > > -I/software/depot/anaconda-2.4.0/include/python2.7 -fno-strict-
aliasing
> > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
> > > export MET_HDF=/software/depot/met-8.1/external_libs
> > > export
> > >
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> > > export MET_NETCDF=/software/depot/met-8.1/external_libs
> > > export MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > export MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> > > -export-dynamic
> > > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > export MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
> > > cd /software/depot/met-8.1/met-8.1
> > > ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2
> > > --enable-modis --enable-mode_graphics --enable-lidar2nc >
> configure.log
> > > 2>&1
> > > configure returned with non-zero (127) status
> > >
> > >
> >
> >
> >
>
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Julie Prestopnik
Time: Thu May 09 14:46:27 2019
Thank you for letting me know. I will proceed with trying to
reproduce the
problem using the gcc-6.3.0. I will follow up once I have more
information.
Julie
On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> When I compiled MET 8.0 the last time, it worked. I was also able to
> compile 8.0 on out Cray:
>
> [root at maury ramos]# ssh ramos at leo1
> Password:
> Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
>
> *** Welcome to Cray eLogin Server ***
> Running 132MB Suse 12.3
> 16 vcores, boot_memtotal: 257916mb
>
> You are accessing a U.S. Government (USG) Information System (IS)
that is
> provided for USG-authorized use only.
> By using this IS (which includes any device attached to this IS),
you
> consent to the following conditions:
> -The USG routinely intercepts and monitors communications on this IS
for
> purposes including, but not limited to,
> penetration testing, COMSEC monitoring, network operations and
defense,
> personnel misconduct (PM), law enforcement (LE),
> and counterintelligence (CI) investigations.
> -At any time, the USG may inspect and seize data stored on this IS.
> -Communications using, or data stored on, this IS are not private,
are
> subject to routine monitoring, interception,
> and search, and may be disclosed or used for any USG-authorized
purpose.
> -This IS includes security measures (e.g., authentication and access
> controls) to protect USG interests -- not for
> your personal benefit or privacy.
> -Notwithstanding the above, using this IS does not constitute
consent to
> PM, LE or CI investigative searching or
> monitoring of the content of privileged communications, or work
product,
> related to personal representation or
> services by attorneys, psychotherapists, or clergy, and their
assistants.
> Such communications and work product are
> private and confidential. See User Agreement for details.
>
> ramos at leo1:~> which gcc
> /opt/gcc/7.3.0/bin/gcc
> ramos at leo1:~>
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 9, 2019 1:05 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hi Gregory. I have not tested with version 6.3.0 of the gcc
compiler, but
> rather only with lower versions (specifically 4.8.5). We would, of
course,
> want our code to work with higher versions as well. I have not yet
had an
> opportunity to test with a higher version like 6.3.0. Do you have
the
> ability to compile MET using a lesser version of the gcc compiler to
see if
> that clears up the issues you are experiencing?
>
> Julie
>
> On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > Any updates or suggestions?
> >
> > Greg
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Tuesday, May 7, 2019 8:22 AM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Hi Greg. Thank you for passing along your config.log file. I see
a
> couple
> > of linker problems in there:
> >
> > /usr/bin/ld: cannot find -lfl
> >
> > /usr/bin/ld: cannot find -ll
> >
> > Based on those errors, it looks like you may not have flex and
bison
> > installed. Please install those and try running configure again.
Please
> > let us know how it goes.
> >
> > Also, I just wanted to address one other thing. In your original
email
> you
> > listed the following as part of your "MET Configuration settings":
> > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> > -export-dynamic
> >
> > However, in your config.log file it looks like MET_PYTHON_LD was
actually
> > set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7
-lpthread
> -ldl
> > -lutil -lm -Xlinker -export-dynamic", which is correct because you
need
> to
> > have that -L part in there, so I just want to ensure that will
stay there
> > when you run configure again.
> >
> > Thanks,
> > Julie
> >
> > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory, Contractor,
Code
> 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >
> > > Configure.log has no meaningful info:
> > >
> > > [ramos at predict met-8.1]$ more configure.log
> > > -bash: [ramos at predict: command not found
> > > [ramos at predict met-8.1]$
> > >
> > >
> > > -----Original Message-----
> > > From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 6, 2019 4:03 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Hi Greg,
> > >
> > > I'll go ahead and assign this ticket to Julie, and she should be
> writing
> > > you back in the next couple of days.
> > >
> > > I do know she'll want to see both the "configure.log" file you
> generated
> > as
> > > well as the "config.log" file from that same directory. So
please send
> > > those along when you get a chance.
> > >
> > > Thanks,
> > > John
> > >
> > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1
> > > via RT <met_help at ucar.edu> wrote:
> > >
> > > >
> > > > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> > > > Transaction: Ticket created by Greg.Ramos.ctr at nrlmry.navy.mil
> > > > Queue: met_help
> > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > > Owner: Nobody
> > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > Status: new
> > > > Ticket <URL:
> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > >
> > > >
> > > >
> > > > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda
2.4.0. The
> > user
> > > > asked for 8.1. I took notes last time, but running into
problems:
> > > >
> > > > MET Configuration settings...
> > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > > export
> > > >
> MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > > > export
> MET_CAIROINC=/software/depot/met-8.1/external_libs/include/cairo
> > > > export MET_GSL=/software/depot/met-8.1/external_libs
> > > > export
> MET_PYTHON_CC=-I/software/depot/anaconda-2.4.0/include/python2.7
> > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> -fno-strict-aliasing
> > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
> > > > export MET_HDF=/software/depot/met-8.1/external_libs
> > > > export
> > > >
> > >
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > > > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> > > > export MET_NETCDF=/software/depot/met-8.1/external_libs
> > > > export MET_FREETYPELIB=/software/depot/met-
8.1/external_libs/lib
> > > > export MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> > > > -export-dynamic
> > > > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > > export MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
> > > > cd /software/depot/met-8.1/met-8.1
> > > > ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2
> > > > --enable-modis --enable-mode_graphics --enable-lidar2nc >
> > configure.log
> > > > 2>&1
> > > > configure returned with non-zero (127) status
> > > >
> > > >
> > >
> > >
> > >
> >
> >
> >
> >
>
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Sun May 12 14:01:28 2019
I was able to build on Red Hat using:
[ramos at lorenz ~]$ gcc --version
gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There
is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE.
[ramos at lorenz ~]$
Not all of the tests passed, please see attachment.
Greg
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Thursday, May 9, 2019 1:46 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Thank you for letting me know. I will proceed with trying to
reproduce the
problem using the gcc-6.3.0. I will follow up once I have more
information.
Julie
On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> When I compiled MET 8.0 the last time, it worked. I was also able to
> compile 8.0 on out Cray:
>
> [root at maury ramos]# ssh ramos at leo1
> Password:
> Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
>
> *** Welcome to Cray eLogin Server ***
> Running 132MB Suse 12.3
> 16 vcores, boot_memtotal: 257916mb
>
> You are accessing a U.S. Government (USG) Information System (IS)
that is
> provided for USG-authorized use only.
> By using this IS (which includes any device attached to this IS),
you
> consent to the following conditions:
> -The USG routinely intercepts and monitors communications on this IS
for
> purposes including, but not limited to,
> penetration testing, COMSEC monitoring, network operations and
defense,
> personnel misconduct (PM), law enforcement (LE),
> and counterintelligence (CI) investigations.
> -At any time, the USG may inspect and seize data stored on this IS.
> -Communications using, or data stored on, this IS are not private,
are
> subject to routine monitoring, interception,
> and search, and may be disclosed or used for any USG-authorized
purpose.
> -This IS includes security measures (e.g., authentication and access
> controls) to protect USG interests -- not for
> your personal benefit or privacy.
> -Notwithstanding the above, using this IS does not constitute
consent to
> PM, LE or CI investigative searching or
> monitoring of the content of privileged communications, or work
product,
> related to personal representation or
> services by attorneys, psychotherapists, or clergy, and their
assistants.
> Such communications and work product are
> private and confidential. See User Agreement for details.
>
> ramos at leo1:~> which gcc
> /opt/gcc/7.3.0/bin/gcc
> ramos at leo1:~>
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 9, 2019 1:05 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hi Gregory. I have not tested with version 6.3.0 of the gcc
compiler, but
> rather only with lower versions (specifically 4.8.5). We would, of
course,
> want our code to work with higher versions as well. I have not yet
had an
> opportunity to test with a higher version like 6.3.0. Do you have
the
> ability to compile MET using a lesser version of the gcc compiler to
see if
> that clears up the issues you are experiencing?
>
> Julie
>
> On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > Any updates or suggestions?
> >
> > Greg
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Tuesday, May 7, 2019 8:22 AM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Hi Greg. Thank you for passing along your config.log file. I see
a
> couple
> > of linker problems in there:
> >
> > /usr/bin/ld: cannot find -lfl
> >
> > /usr/bin/ld: cannot find -ll
> >
> > Based on those errors, it looks like you may not have flex and
bison
> > installed. Please install those and try running configure again.
Please
> > let us know how it goes.
> >
> > Also, I just wanted to address one other thing. In your original
email
> you
> > listed the following as part of your "MET Configuration settings":
> > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> > -export-dynamic
> >
> > However, in your config.log file it looks like MET_PYTHON_LD was
actually
> > set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7
-lpthread
> -ldl
> > -lutil -lm -Xlinker -export-dynamic", which is correct because you
need
> to
> > have that -L part in there, so I just want to ensure that will
stay there
> > when you run configure again.
> >
> > Thanks,
> > Julie
> >
> > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory, Contractor,
Code
> 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >
> > > Configure.log has no meaningful info:
> > >
> > > [ramos at predict met-8.1]$ more configure.log
> > > -bash: [ramos at predict: command not found
> > > [ramos at predict met-8.1]$
> > >
> > >
> > > -----Original Message-----
> > > From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 6, 2019 4:03 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Hi Greg,
> > >
> > > I'll go ahead and assign this ticket to Julie, and she should be
> writing
> > > you back in the next couple of days.
> > >
> > > I do know she'll want to see both the "configure.log" file you
> generated
> > as
> > > well as the "config.log" file from that same directory. So
please send
> > > those along when you get a chance.
> > >
> > > Thanks,
> > > John
> > >
> > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1
> > > via RT <met_help at ucar.edu> wrote:
> > >
> > > >
> > > > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> > > > Transaction: Ticket created by Greg.Ramos.ctr at nrlmry.navy.mil
> > > > Queue: met_help
> > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > > Owner: Nobody
> > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > Status: new
> > > > Ticket <URL:
> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > >
> > > >
> > > >
> > > > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda
2.4.0. The
> > user
> > > > asked for 8.1. I took notes last time, but running into
problems:
> > > >
> > > > MET Configuration settings...
> > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > > export
> > > >
> MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > > > export
> MET_CAIROINC=/software/depot/met-8.1/external_libs/include/cairo
> > > > export MET_GSL=/software/depot/met-8.1/external_libs
> > > > export
> MET_PYTHON_CC=-I/software/depot/anaconda-2.4.0/include/python2.7
> > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> -fno-strict-aliasing
> > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
> > > > export MET_HDF=/software/depot/met-8.1/external_libs
> > > > export
> > > >
> > >
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > > > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> > > > export MET_NETCDF=/software/depot/met-8.1/external_libs
> > > > export MET_FREETYPELIB=/software/depot/met-
8.1/external_libs/lib
> > > > export MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> > > > -export-dynamic
> > > > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > > export MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
> > > > cd /software/depot/met-8.1/met-8.1
> > > > ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2
> > > > --enable-modis --enable-mode_graphics --enable-lidar2nc >
> > configure.log
> > > > 2>&1
> > > > configure returned with non-zero (127) status
> > > >
> > > >
> > >
> > >
> > >
> >
> >
> >
> >
>
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Julie Prestopnik
Time: Mon May 13 10:14:05 2019
Hi Greg. I am checking in with another developer regarding the error
you
experienced. Thank you for your patience.
Julie
On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> I was able to build on Red Hat using:
>
> [ramos at lorenz ~]$ gcc --version
> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> Copyright (C) 2010 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions. There
is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE.
>
> [ramos at lorenz ~]$
>
> Not all of the tests passed, please see attachment.
>
> Greg
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 9, 2019 1:46 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Thank you for letting me know. I will proceed with trying to
reproduce the
> problem using the gcc-6.3.0. I will follow up once I have more
> information.
>
> Julie
>
> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > When I compiled MET 8.0 the last time, it worked. I was also able
to
> > compile 8.0 on out Cray:
> >
> > [root at maury ramos]# ssh ramos at leo1
> > Password:
> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> >
> > *** Welcome to Cray eLogin Server ***
> > Running 132MB Suse 12.3
> > 16 vcores, boot_memtotal: 257916mb
> >
> > You are accessing a U.S. Government (USG) Information System (IS)
that is
> > provided for USG-authorized use only.
> > By using this IS (which includes any device attached to this IS),
you
> > consent to the following conditions:
> > -The USG routinely intercepts and monitors communications on this
IS for
> > purposes including, but not limited to,
> > penetration testing, COMSEC monitoring, network operations and
defense,
> > personnel misconduct (PM), law enforcement (LE),
> > and counterintelligence (CI) investigations.
> > -At any time, the USG may inspect and seize data stored on this
IS.
> > -Communications using, or data stored on, this IS are not private,
are
> > subject to routine monitoring, interception,
> > and search, and may be disclosed or used for any USG-authorized
purpose.
> > -This IS includes security measures (e.g., authentication and
access
> > controls) to protect USG interests -- not for
> > your personal benefit or privacy.
> > -Notwithstanding the above, using this IS does not constitute
consent to
> > PM, LE or CI investigative searching or
> > monitoring of the content of privileged communications, or work
product,
> > related to personal representation or
> > services by attorneys, psychotherapists, or clergy, and their
assistants.
> > Such communications and work product are
> > private and confidential. See User Agreement for details.
> >
> > ramos at leo1:~> which gcc
> > /opt/gcc/7.3.0/bin/gcc
> > ramos at leo1:~>
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, May 9, 2019 1:05 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Hi Gregory. I have not tested with version 6.3.0 of the gcc
compiler,
> but
> > rather only with lower versions (specifically 4.8.5). We would,
of
> course,
> > want our code to work with higher versions as well. I have not
yet had
> an
> > opportunity to test with a higher version like 6.3.0. Do you have
the
> > ability to compile MET using a lesser version of the gcc compiler
to see
> if
> > that clears up the issues you are experiencing?
> >
> > Julie
> >
> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory, Contractor,
Code
> 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >
> > > Any updates or suggestions?
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Hi Greg. Thank you for passing along your config.log file. I
see a
> > couple
> > > of linker problems in there:
> > >
> > > /usr/bin/ld: cannot find -lfl
> > >
> > > /usr/bin/ld: cannot find -ll
> > >
> > > Based on those errors, it looks like you may not have flex and
bison
> > > installed. Please install those and try running configure
again.
> Please
> > > let us know how it goes.
> > >
> > > Also, I just wanted to address one other thing. In your
original email
> > you
> > > listed the following as part of your "MET Configuration
settings":
> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> > > -export-dynamic
> > >
> > > However, in your config.log file it looks like MET_PYTHON_LD was
> actually
> > > set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7
-lpthread
> > -ldl
> > > -lutil -lm -Xlinker -export-dynamic", which is correct because
you need
> > to
> > > have that -L part in there, so I just want to ensure that will
stay
> there
> > > when you run configure again.
> > >
> > > Thanks,
> > > Julie
> > >
> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1
> > > via RT <met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >
> > > > Configure.log has no meaningful info:
> > > >
> > > > [ramos at predict met-8.1]$ more configure.log
> > > > -bash: [ramos at predict: command not found
> > > > [ramos at predict met-8.1]$
> > > >
> > > >
> > > > -----Original Message-----
> > > > From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > Prestopnik
> > > >
> > > > Hi Greg,
> > > >
> > > > I'll go ahead and assign this ticket to Julie, and she should
be
> > writing
> > > > you back in the next couple of days.
> > > >
> > > > I do know she'll want to see both the "configure.log" file you
> > generated
> > > as
> > > > well as the "config.log" file from that same directory. So
please
> send
> > > > those along when you get a chance.
> > > >
> > > > Thanks,
> > > > John
> > > >
> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory, Contractor,
Code
> > > 7501.1
> > > > via RT <met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> > > > > Transaction: Ticket created by
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > Queue: met_help
> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > > > Owner: Nobody
> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > Status: new
> > > > > Ticket <URL:
> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > >
> > > > >
> > > > >
> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda
2.4.0.
> The
> > > user
> > > > > asked for 8.1. I took notes last time, but running into
problems:
> > > > >
> > > > > MET Configuration settings...
> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > > > export
> > > > >
> > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > > > > export
> > MET_CAIROINC=/software/depot/met-8.1/external_libs/include/cairo
> > > > > export MET_GSL=/software/depot/met-8.1/external_libs
> > > > > export
> > MET_PYTHON_CC=-I/software/depot/anaconda-2.4.0/include/python2.7
> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> > -fno-strict-aliasing
> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
> > > > > export MET_HDF=/software/depot/met-8.1/external_libs
> > > > > export
> > > > >
> > > >
> > >
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > > > > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> > > > > export MET_NETCDF=/software/depot/met-8.1/external_libs
> > > > > export MET_FREETYPELIB=/software/depot/met-
8.1/external_libs/lib
> > > > > export MET_CAIROLIB=/software/depot/met-
8.1/external_libs/lib
> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> > > > > -export-dynamic
> > > > > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > > > export MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
--enable-grib2
> > > > > --enable-modis --enable-mode_graphics --enable-lidar2nc >
> > > configure.log
> > > > > 2>&1
> > > > > configure returned with non-zero (127) status
> > > > >
> > > > >
> > > >
> > > >
> > > >
> > >
> > >
> > >
> > >
> >
> >
> >
> >
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Julie Prestopnik
Time: Mon May 13 15:07:05 2019
Hi Greg. Our developer suspects it may be a mismatched
compiler/library
version. Was BUFRLIB installed with the same compiler as MET? Also,
what
version of BURRLIB are you using?
Thanks,
Julie
On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik <jpresto at ucar.edu>
wrote:
> Hi Greg. I am checking in with another developer regarding the
error you
> experienced. Thank you for your patience.
>
> Julie
>
> On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory, Contractor, Code
> 7501.1 via RT <met_help at ucar.edu> wrote:
>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>>
>> I was able to build on Red Hat using:
>>
>> [ramos at lorenz ~]$ gcc --version
>> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
>> Copyright (C) 2010 Free Software Foundation, Inc.
>> This is free software; see the source for copying conditions.
There is NO
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
>> PURPOSE.
>>
>> [ramos at lorenz ~]$
>>
>> Not all of the tests passed, please see attachment.
>>
>> Greg
>>
>> -----Original Message-----
>> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
>> Sent: Thursday, May 9, 2019 1:46 PM
>> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
>> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
>> Prestopnik
>>
>> Thank you for letting me know. I will proceed with trying to
reproduce
>> the
>> problem using the gcc-6.3.0. I will follow up once I have more
>> information.
>>
>> Julie
>>
>> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
>> via RT <met_help at ucar.edu> wrote:
>>
>> >
>> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>> >
>> > When I compiled MET 8.0 the last time, it worked. I was also able
to
>> > compile 8.0 on out Cray:
>> >
>> > [root at maury ramos]# ssh ramos at leo1
>> > Password:
>> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
>> >
>> > *** Welcome to Cray eLogin Server ***
>> > Running 132MB Suse 12.3
>> > 16 vcores, boot_memtotal: 257916mb
>> >
>> > You are accessing a U.S. Government (USG) Information System (IS)
that
>> is
>> > provided for USG-authorized use only.
>> > By using this IS (which includes any device attached to this IS),
you
>> > consent to the following conditions:
>> > -The USG routinely intercepts and monitors communications on this
IS for
>> > purposes including, but not limited to,
>> > penetration testing, COMSEC monitoring, network operations and
defense,
>> > personnel misconduct (PM), law enforcement (LE),
>> > and counterintelligence (CI) investigations.
>> > -At any time, the USG may inspect and seize data stored on this
IS.
>> > -Communications using, or data stored on, this IS are not
private, are
>> > subject to routine monitoring, interception,
>> > and search, and may be disclosed or used for any USG-authorized
purpose.
>> > -This IS includes security measures (e.g., authentication and
access
>> > controls) to protect USG interests -- not for
>> > your personal benefit or privacy.
>> > -Notwithstanding the above, using this IS does not constitute
consent to
>> > PM, LE or CI investigative searching or
>> > monitoring of the content of privileged communications, or work
product,
>> > related to personal representation or
>> > services by attorneys, psychotherapists, or clergy, and their
>> assistants.
>> > Such communications and work product are
>> > private and confidential. See User Agreement for details.
>> >
>> > ramos at leo1:~> which gcc
>> > /opt/gcc/7.3.0/bin/gcc
>> > ramos at leo1:~>
>> >
>> > -----Original Message-----
>> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
>> > Sent: Thursday, May 9, 2019 1:05 PM
>> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
>> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
>> > Prestopnik
>> >
>> > Hi Gregory. I have not tested with version 6.3.0 of the gcc
compiler,
>> but
>> > rather only with lower versions (specifically 4.8.5). We would,
of
>> course,
>> > want our code to work with higher versions as well. I have not
yet had
>> an
>> > opportunity to test with a higher version like 6.3.0. Do you
have the
>> > ability to compile MET using a lesser version of the gcc compiler
to
>> see if
>> > that clears up the issues you are experiencing?
>> >
>> > Julie
>> >
>> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory, Contractor,
Code
>> 7501.1
>> > via RT <met_help at ucar.edu> wrote:
>> >
>> > >
>> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>> > >
>> > > Any updates or suggestions?
>> > >
>> > > Greg
>> > >
>> > > -----Original Message-----
>> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
>> > > Sent: Tuesday, May 7, 2019 8:22 AM
>> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
>> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
>> > > Prestopnik
>> > >
>> > > Hi Greg. Thank you for passing along your config.log file. I
see a
>> > couple
>> > > of linker problems in there:
>> > >
>> > > /usr/bin/ld: cannot find -lfl
>> > >
>> > > /usr/bin/ld: cannot find -ll
>> > >
>> > > Based on those errors, it looks like you may not have flex and
bison
>> > > installed. Please install those and try running configure
again.
>> Please
>> > > let us know how it goes.
>> > >
>> > > Also, I just wanted to address one other thing. In your
original
>> email
>> > you
>> > > listed the following as part of your "MET Configuration
settings":
>> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
>> > > -export-dynamic
>> > >
>> > > However, in your config.log file it looks like MET_PYTHON_LD
was
>> actually
>> > > set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7
-lpthread
>> > -ldl
>> > > -lutil -lm -Xlinker -export-dynamic", which is correct because
you
>> need
>> > to
>> > > have that -L part in there, so I just want to ensure that will
stay
>> there
>> > > when you run configure again.
>> > >
>> > > Thanks,
>> > > Julie
>> > >
>> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory, Contractor,
Code
>> > 7501.1
>> > > via RT <met_help at ucar.edu> wrote:
>> > >
>> > > >
>> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
>> > > >
>> > > > Configure.log has no meaningful info:
>> > > >
>> > > > [ramos at predict met-8.1]$ more configure.log
>> > > > -bash: [ramos at predict: command not found
>> > > > [ramos at predict met-8.1]$
>> > > >
>> > > >
>> > > > -----Original Message-----
>> > > > From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
>> > > > Sent: Monday, May 6, 2019 4:03 PM
>> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
>> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
>> > > > Prestopnik
>> > > >
>> > > > Hi Greg,
>> > > >
>> > > > I'll go ahead and assign this ticket to Julie, and she should
be
>> > writing
>> > > > you back in the next couple of days.
>> > > >
>> > > > I do know she'll want to see both the "configure.log" file
you
>> > generated
>> > > as
>> > > > well as the "config.log" file from that same directory. So
please
>> send
>> > > > those along when you get a chance.
>> > > >
>> > > > Thanks,
>> > > > John
>> > > >
>> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
Contractor, Code
>> > > 7501.1
>> > > > via RT <met_help at ucar.edu> wrote:
>> > > >
>> > > > >
>> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
>> > > > > Transaction: Ticket created by
Greg.Ramos.ctr at nrlmry.navy.mil
>> > > > > Queue: met_help
>> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
>> > > > > Owner: Nobody
>> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
>> > > > > Status: new
>> > > > > Ticket <URL:
>> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>> > > >
>> > > > >
>> > > > >
>> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda
2.4.0.
>> The
>> > > user
>> > > > > asked for 8.1. I took notes last time, but running into
problems:
>> > > > >
>> > > > > MET Configuration settings...
>> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
>> > > > > export
>> > > > >
>> > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
>> > > > > export
>> > MET_CAIROINC=/software/depot/met-8.1/external_libs/include/cairo
>> > > > > export MET_GSL=/software/depot/met-8.1/external_libs
>> > > > > export
>> > MET_PYTHON_CC=-I/software/depot/anaconda-2.4.0/include/python2.7
>> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
>> > -fno-strict-aliasing
>> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
prototypes
>> > > > > export MET_HDF=/software/depot/met-8.1/external_libs
>> > > > > export
>> > > > >
>> > > >
>> > >
>> >
>> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
>> > > > > export MET_HDFEOS=/software/depot/met-8.1/external_libs
>> > > > > export MET_NETCDF=/software/depot/met-8.1/external_libs
>> > > > > export MET_FREETYPELIB=/software/depot/met-
8.1/external_libs/lib
>> > > > > export MET_CAIROLIB=/software/depot/met-
8.1/external_libs/lib
>> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
>> -Xlinker
>> > > > > -export-dynamic
>> > > > > export MET_GRIB2C=/software/depot/met-8.1/external_libs
>> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
>> > > > > export MET_BUFRLIB=/software/depot/met-
8.1/external_libs/lib
>> > > > > cd /software/depot/met-8.1/met-8.1
>> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
>> --enable-grib2
>> > > > > --enable-modis --enable-mode_graphics --enable-lidar2nc >
>> > > configure.log
>> > > > > 2>&1
>> > > > > configure returned with non-zero (127) status
>> > > > >
>> > > > >
>> > > >
>> > > >
>> > > >
>> > >
>> > >
>> > >
>> > >
>> >
>> >
>> >
>> >
>>
>>
>>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Mon May 13 15:08:55 2019
I used the buildscript. It should build all of the external libraries,
so I believe everything was built with the same compiler.
Greg
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Monday, May 13, 2019 2:07 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Hi Greg. Our developer suspects it may be a mismatched
compiler/library
version. Was BUFRLIB installed with the same compiler as MET? Also,
what
version of BURRLIB are you using?
Thanks,
Julie
On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik <jpresto at ucar.edu>
wrote:
> Hi Greg. I am checking in with another developer regarding the
error you
> experienced. Thank you for your patience.
>
> Julie
>
> On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory, Contractor, Code
> 7501.1 via RT <met_help at ucar.edu> wrote:
>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>>
>> I was able to build on Red Hat using:
>>
>> [ramos at lorenz ~]$ gcc --version
>> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
>> Copyright (C) 2010 Free Software Foundation, Inc.
>> This is free software; see the source for copying conditions.
There is NO
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
>> PURPOSE.
>>
>> [ramos at lorenz ~]$
>>
>> Not all of the tests passed, please see attachment.
>>
>> Greg
>>
>> -----Original Message-----
>> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
>> Sent: Thursday, May 9, 2019 1:46 PM
>> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
>> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
>> Prestopnik
>>
>> Thank you for letting me know. I will proceed with trying to
reproduce
>> the
>> problem using the gcc-6.3.0. I will follow up once I have more
>> information.
>>
>> Julie
>>
>> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
>> via RT <met_help at ucar.edu> wrote:
>>
>> >
>> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>> >
>> > When I compiled MET 8.0 the last time, it worked. I was also able
to
>> > compile 8.0 on out Cray:
>> >
>> > [root at maury ramos]# ssh ramos at leo1
>> > Password:
>> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
>> >
>> > *** Welcome to Cray eLogin Server ***
>> > Running 132MB Suse 12.3
>> > 16 vcores, boot_memtotal: 257916mb
>> >
>> > You are accessing a U.S. Government (USG) Information System (IS)
that
>> is
>> > provided for USG-authorized use only.
>> > By using this IS (which includes any device attached to this IS),
you
>> > consent to the following conditions:
>> > -The USG routinely intercepts and monitors communications on this
IS for
>> > purposes including, but not limited to,
>> > penetration testing, COMSEC monitoring, network operations and
defense,
>> > personnel misconduct (PM), law enforcement (LE),
>> > and counterintelligence (CI) investigations.
>> > -At any time, the USG may inspect and seize data stored on this
IS.
>> > -Communications using, or data stored on, this IS are not
private, are
>> > subject to routine monitoring, interception,
>> > and search, and may be disclosed or used for any USG-authorized
purpose.
>> > -This IS includes security measures (e.g., authentication and
access
>> > controls) to protect USG interests -- not for
>> > your personal benefit or privacy.
>> > -Notwithstanding the above, using this IS does not constitute
consent to
>> > PM, LE or CI investigative searching or
>> > monitoring of the content of privileged communications, or work
product,
>> > related to personal representation or
>> > services by attorneys, psychotherapists, or clergy, and their
>> assistants.
>> > Such communications and work product are
>> > private and confidential. See User Agreement for details.
>> >
>> > ramos at leo1:~> which gcc
>> > /opt/gcc/7.3.0/bin/gcc
>> > ramos at leo1:~>
>> >
>> > -----Original Message-----
>> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
>> > Sent: Thursday, May 9, 2019 1:05 PM
>> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
>> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
>> > Prestopnik
>> >
>> > Hi Gregory. I have not tested with version 6.3.0 of the gcc
compiler,
>> but
>> > rather only with lower versions (specifically 4.8.5). We would,
of
>> course,
>> > want our code to work with higher versions as well. I have not
yet had
>> an
>> > opportunity to test with a higher version like 6.3.0. Do you
have the
>> > ability to compile MET using a lesser version of the gcc compiler
to
>> see if
>> > that clears up the issues you are experiencing?
>> >
>> > Julie
>> >
>> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory, Contractor,
Code
>> 7501.1
>> > via RT <met_help at ucar.edu> wrote:
>> >
>> > >
>> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>> > >
>> > > Any updates or suggestions?
>> > >
>> > > Greg
>> > >
>> > > -----Original Message-----
>> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
>> > > Sent: Tuesday, May 7, 2019 8:22 AM
>> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
>> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
>> > > Prestopnik
>> > >
>> > > Hi Greg. Thank you for passing along your config.log file. I
see a
>> > couple
>> > > of linker problems in there:
>> > >
>> > > /usr/bin/ld: cannot find -lfl
>> > >
>> > > /usr/bin/ld: cannot find -ll
>> > >
>> > > Based on those errors, it looks like you may not have flex and
bison
>> > > installed. Please install those and try running configure
again.
>> Please
>> > > let us know how it goes.
>> > >
>> > > Also, I just wanted to address one other thing. In your
original
>> email
>> > you
>> > > listed the following as part of your "MET Configuration
settings":
>> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
>> > > -export-dynamic
>> > >
>> > > However, in your config.log file it looks like MET_PYTHON_LD
was
>> actually
>> > > set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7
-lpthread
>> > -ldl
>> > > -lutil -lm -Xlinker -export-dynamic", which is correct because
you
>> need
>> > to
>> > > have that -L part in there, so I just want to ensure that will
stay
>> there
>> > > when you run configure again.
>> > >
>> > > Thanks,
>> > > Julie
>> > >
>> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory, Contractor,
Code
>> > 7501.1
>> > > via RT <met_help at ucar.edu> wrote:
>> > >
>> > > >
>> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
>> > > >
>> > > > Configure.log has no meaningful info:
>> > > >
>> > > > [ramos at predict met-8.1]$ more configure.log
>> > > > -bash: [ramos at predict: command not found
>> > > > [ramos at predict met-8.1]$
>> > > >
>> > > >
>> > > > -----Original Message-----
>> > > > From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
>> > > > Sent: Monday, May 6, 2019 4:03 PM
>> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
>> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
>> > > > Prestopnik
>> > > >
>> > > > Hi Greg,
>> > > >
>> > > > I'll go ahead and assign this ticket to Julie, and she should
be
>> > writing
>> > > > you back in the next couple of days.
>> > > >
>> > > > I do know she'll want to see both the "configure.log" file
you
>> > generated
>> > > as
>> > > > well as the "config.log" file from that same directory. So
please
>> send
>> > > > those along when you get a chance.
>> > > >
>> > > > Thanks,
>> > > > John
>> > > >
>> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
Contractor, Code
>> > > 7501.1
>> > > > via RT <met_help at ucar.edu> wrote:
>> > > >
>> > > > >
>> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
>> > > > > Transaction: Ticket created by
Greg.Ramos.ctr at nrlmry.navy.mil
>> > > > > Queue: met_help
>> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
>> > > > > Owner: Nobody
>> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
>> > > > > Status: new
>> > > > > Ticket <URL:
>> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>> > > >
>> > > > >
>> > > > >
>> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda
2.4.0.
>> The
>> > > user
>> > > > > asked for 8.1. I took notes last time, but running into
problems:
>> > > > >
>> > > > > MET Configuration settings...
>> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
>> > > > > export
>> > > > >
>> > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
>> > > > > export
>> > MET_CAIROINC=/software/depot/met-8.1/external_libs/include/cairo
>> > > > > export MET_GSL=/software/depot/met-8.1/external_libs
>> > > > > export
>> > MET_PYTHON_CC=-I/software/depot/anaconda-2.4.0/include/python2.7
>> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
>> > -fno-strict-aliasing
>> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
prototypes
>> > > > > export MET_HDF=/software/depot/met-8.1/external_libs
>> > > > > export
>> > > > >
>> > > >
>> > >
>> >
>> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
>> > > > > export MET_HDFEOS=/software/depot/met-8.1/external_libs
>> > > > > export MET_NETCDF=/software/depot/met-8.1/external_libs
>> > > > > export MET_FREETYPELIB=/software/depot/met-
8.1/external_libs/lib
>> > > > > export MET_CAIROLIB=/software/depot/met-
8.1/external_libs/lib
>> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
>> -Xlinker
>> > > > > -export-dynamic
>> > > > > export MET_GRIB2C=/software/depot/met-8.1/external_libs
>> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
>> > > > > export MET_BUFRLIB=/software/depot/met-
8.1/external_libs/lib
>> > > > > cd /software/depot/met-8.1/met-8.1
>> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
>> --enable-grib2
>> > > > > --enable-modis --enable-mode_graphics --enable-lidar2nc >
>> > > configure.log
>> > > > > 2>&1
>> > > > > configure returned with non-zero (127) status
>> > > > >
>> > > > >
>> > > >
>> > > >
>> > > >
>> > >
>> > >
>> > >
>> > >
>> >
>> >
>> >
>> >
>>
>>
>>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Mon May 13 15:11:31 2019
These are my binaries:
[ramos at lorenz ~]$ ls -larth /software/depot/met-8.1/met-8.1/bin
total 395M
-rwxr-xr-x. 1 ramos ramos 19M May 11 13:27 ensemble_stat
-rwxr-xr-x. 1 ramos ramos 19M May 11 13:27 grid_stat
-rwxr-xr-x. 1 ramos ramos 20M May 11 13:27 mode
-rwxr-xr-x. 1 ramos ramos 9.2M May 11 13:27 mode_analysis
-rwxr-xr-x. 1 ramos ramos 13M May 11 13:27 pcp_combine
-rwxr-xr-x. 1 ramos ramos 18M May 11 13:27 point_stat
-rwxr-xr-x. 1 ramos ramos 21M May 11 13:27 stat_analysis
-rwxr-xr-x. 1 ramos ramos 19M May 11 13:27 wavelet_stat
-rwxr-xr-x. 1 ramos ramos 16M May 11 13:27 series_analysis
-rwxr-xr-x. 1 ramos ramos 1.3M May 11 13:27 gis_dump_shp
-rwxr-xr-x. 1 ramos ramos 1.1M May 11 13:27 gis_dump_shx
-rwxr-xr-x. 1 ramos ramos 1023K May 11 13:27 gis_dump_dbf
-rwxr-xr-x. 1 ramos ramos 14M May 11 13:27 gen_vx_mask
-rwxr-xr-x. 1 ramos ramos 14M May 11 13:27 plot_data_plane
-rwxr-xr-x. 1 ramos ramos 13M May 11 13:27 plot_point_obs
-rwxr-xr-x. 1 ramos ramos 16M May 11 13:27 ascii2nc
-rwxr-xr-x. 1 ramos ramos 3.7M May 11 13:27 lidar2nc
-rwxr-xr-x. 1 ramos ramos 15M May 11 13:27 madis2nc
-rwxr-xr-x. 1 ramos ramos 16M May 11 13:27 pb2nc
-rwxr-xr-x. 1 ramos ramos 14M May 11 13:27 wwmca_regrid
-rwxr-xr-x. 1 ramos ramos 15M May 11 13:27 wwmca_plot
-rwxr-xr-x. 1 ramos ramos 14M May 11 13:27 modis_regrid
-rwxr-xr-x. 1 ramos ramos 7.1M May 11 13:27 plot_mode_field
-rwxr-xr-x. 1 ramos ramos 16M May 11 13:27 mtd
-rwxr-xr-x. 1 ramos ramos 11M May 11 13:27 gsid2mpr
-rwxr-xr-x. 1 ramos ramos 11M May 11 13:27 gsidens2orank
-rwxr-xr-x. 1 ramos ramos 14M May 11 13:27 regrid_data_plane
-rwxr-xr-x. 1 ramos ramos 13M May 11 13:27 shift_data_plane
-rwxr-xr-x. 1 ramos ramos 6.0M May 11 13:27 tc_dland
-rwxr-xr-x. 1 ramos ramos 16M May 11 13:27 tc_pairs
-rwxr-xr-x. 1 ramos ramos 19M May 11 13:27 tc_stat
drwxr-xr-x. 9 ramos ramos 4.0K May 11 13:27 ..
drwxr-xr-x. 2 ramos ramos 4.0K May 11 13:44 .
[ramos at lorenz ~]$
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Monday, May 13, 2019 2:07 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Hi Greg. Our developer suspects it may be a mismatched
compiler/library
version. Was BUFRLIB installed with the same compiler as MET? Also,
what
version of BURRLIB are you using?
Thanks,
Julie
On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik <jpresto at ucar.edu>
wrote:
> Hi Greg. I am checking in with another developer regarding the
error you
> experienced. Thank you for your patience.
>
> Julie
>
> On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory, Contractor, Code
> 7501.1 via RT <met_help at ucar.edu> wrote:
>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>>
>> I was able to build on Red Hat using:
>>
>> [ramos at lorenz ~]$ gcc --version
>> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
>> Copyright (C) 2010 Free Software Foundation, Inc.
>> This is free software; see the source for copying conditions.
There is NO
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
>> PURPOSE.
>>
>> [ramos at lorenz ~]$
>>
>> Not all of the tests passed, please see attachment.
>>
>> Greg
>>
>> -----Original Message-----
>> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
>> Sent: Thursday, May 9, 2019 1:46 PM
>> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
>> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
>> Prestopnik
>>
>> Thank you for letting me know. I will proceed with trying to
reproduce
>> the
>> problem using the gcc-6.3.0. I will follow up once I have more
>> information.
>>
>> Julie
>>
>> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
>> via RT <met_help at ucar.edu> wrote:
>>
>> >
>> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>> >
>> > When I compiled MET 8.0 the last time, it worked. I was also able
to
>> > compile 8.0 on out Cray:
>> >
>> > [root at maury ramos]# ssh ramos at leo1
>> > Password:
>> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
>> >
>> > *** Welcome to Cray eLogin Server ***
>> > Running 132MB Suse 12.3
>> > 16 vcores, boot_memtotal: 257916mb
>> >
>> > You are accessing a U.S. Government (USG) Information System (IS)
that
>> is
>> > provided for USG-authorized use only.
>> > By using this IS (which includes any device attached to this IS),
you
>> > consent to the following conditions:
>> > -The USG routinely intercepts and monitors communications on this
IS for
>> > purposes including, but not limited to,
>> > penetration testing, COMSEC monitoring, network operations and
defense,
>> > personnel misconduct (PM), law enforcement (LE),
>> > and counterintelligence (CI) investigations.
>> > -At any time, the USG may inspect and seize data stored on this
IS.
>> > -Communications using, or data stored on, this IS are not
private, are
>> > subject to routine monitoring, interception,
>> > and search, and may be disclosed or used for any USG-authorized
purpose.
>> > -This IS includes security measures (e.g., authentication and
access
>> > controls) to protect USG interests -- not for
>> > your personal benefit or privacy.
>> > -Notwithstanding the above, using this IS does not constitute
consent to
>> > PM, LE or CI investigative searching or
>> > monitoring of the content of privileged communications, or work
product,
>> > related to personal representation or
>> > services by attorneys, psychotherapists, or clergy, and their
>> assistants.
>> > Such communications and work product are
>> > private and confidential. See User Agreement for details.
>> >
>> > ramos at leo1:~> which gcc
>> > /opt/gcc/7.3.0/bin/gcc
>> > ramos at leo1:~>
>> >
>> > -----Original Message-----
>> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
>> > Sent: Thursday, May 9, 2019 1:05 PM
>> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
>> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
>> > Prestopnik
>> >
>> > Hi Gregory. I have not tested with version 6.3.0 of the gcc
compiler,
>> but
>> > rather only with lower versions (specifically 4.8.5). We would,
of
>> course,
>> > want our code to work with higher versions as well. I have not
yet had
>> an
>> > opportunity to test with a higher version like 6.3.0. Do you
have the
>> > ability to compile MET using a lesser version of the gcc compiler
to
>> see if
>> > that clears up the issues you are experiencing?
>> >
>> > Julie
>> >
>> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory, Contractor,
Code
>> 7501.1
>> > via RT <met_help at ucar.edu> wrote:
>> >
>> > >
>> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>> > >
>> > > Any updates or suggestions?
>> > >
>> > > Greg
>> > >
>> > > -----Original Message-----
>> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
>> > > Sent: Tuesday, May 7, 2019 8:22 AM
>> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
>> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
>> > > Prestopnik
>> > >
>> > > Hi Greg. Thank you for passing along your config.log file. I
see a
>> > couple
>> > > of linker problems in there:
>> > >
>> > > /usr/bin/ld: cannot find -lfl
>> > >
>> > > /usr/bin/ld: cannot find -ll
>> > >
>> > > Based on those errors, it looks like you may not have flex and
bison
>> > > installed. Please install those and try running configure
again.
>> Please
>> > > let us know how it goes.
>> > >
>> > > Also, I just wanted to address one other thing. In your
original
>> email
>> > you
>> > > listed the following as part of your "MET Configuration
settings":
>> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
>> > > -export-dynamic
>> > >
>> > > However, in your config.log file it looks like MET_PYTHON_LD
was
>> actually
>> > > set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7
-lpthread
>> > -ldl
>> > > -lutil -lm -Xlinker -export-dynamic", which is correct because
you
>> need
>> > to
>> > > have that -L part in there, so I just want to ensure that will
stay
>> there
>> > > when you run configure again.
>> > >
>> > > Thanks,
>> > > Julie
>> > >
>> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory, Contractor,
Code
>> > 7501.1
>> > > via RT <met_help at ucar.edu> wrote:
>> > >
>> > > >
>> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
>> > > >
>> > > > Configure.log has no meaningful info:
>> > > >
>> > > > [ramos at predict met-8.1]$ more configure.log
>> > > > -bash: [ramos at predict: command not found
>> > > > [ramos at predict met-8.1]$
>> > > >
>> > > >
>> > > > -----Original Message-----
>> > > > From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
>> > > > Sent: Monday, May 6, 2019 4:03 PM
>> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
>> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
>> > > > Prestopnik
>> > > >
>> > > > Hi Greg,
>> > > >
>> > > > I'll go ahead and assign this ticket to Julie, and she should
be
>> > writing
>> > > > you back in the next couple of days.
>> > > >
>> > > > I do know she'll want to see both the "configure.log" file
you
>> > generated
>> > > as
>> > > > well as the "config.log" file from that same directory. So
please
>> send
>> > > > those along when you get a chance.
>> > > >
>> > > > Thanks,
>> > > > John
>> > > >
>> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
Contractor, Code
>> > > 7501.1
>> > > > via RT <met_help at ucar.edu> wrote:
>> > > >
>> > > > >
>> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
>> > > > > Transaction: Ticket created by
Greg.Ramos.ctr at nrlmry.navy.mil
>> > > > > Queue: met_help
>> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
>> > > > > Owner: Nobody
>> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
>> > > > > Status: new
>> > > > > Ticket <URL:
>> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>> > > >
>> > > > >
>> > > > >
>> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda
2.4.0.
>> The
>> > > user
>> > > > > asked for 8.1. I took notes last time, but running into
problems:
>> > > > >
>> > > > > MET Configuration settings...
>> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
>> > > > > export
>> > > > >
>> > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
>> > > > > export
>> > MET_CAIROINC=/software/depot/met-8.1/external_libs/include/cairo
>> > > > > export MET_GSL=/software/depot/met-8.1/external_libs
>> > > > > export
>> > MET_PYTHON_CC=-I/software/depot/anaconda-2.4.0/include/python2.7
>> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
>> > -fno-strict-aliasing
>> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
prototypes
>> > > > > export MET_HDF=/software/depot/met-8.1/external_libs
>> > > > > export
>> > > > >
>> > > >
>> > >
>> >
>> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
>> > > > > export MET_HDFEOS=/software/depot/met-8.1/external_libs
>> > > > > export MET_NETCDF=/software/depot/met-8.1/external_libs
>> > > > > export MET_FREETYPELIB=/software/depot/met-
8.1/external_libs/lib
>> > > > > export MET_CAIROLIB=/software/depot/met-
8.1/external_libs/lib
>> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
>> -Xlinker
>> > > > > -export-dynamic
>> > > > > export MET_GRIB2C=/software/depot/met-8.1/external_libs
>> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
>> > > > > export MET_BUFRLIB=/software/depot/met-
8.1/external_libs/lib
>> > > > > cd /software/depot/met-8.1/met-8.1
>> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
>> --enable-grib2
>> > > > > --enable-modis --enable-mode_graphics --enable-lidar2nc >
>> > > configure.log
>> > > > > 2>&1
>> > > > > configure returned with non-zero (127) status
>> > > > >
>> > > > >
>> > > >
>> > > >
>> > > >
>> > >
>> > >
>> > >
>> > >
>> >
>> >
>> >
>> >
>>
>>
>>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Julie Prestopnik
Time: Mon May 13 15:14:36 2019
Could you please run the following:
which pb2nc
ldd <full path to pb2nc> | grep gfortran
and send me the output?
Please also send your config.log and make.log file.
Thank you!
Julie
On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> I used the buildscript. It should build all of the external
libraries, so
> I believe everything was built with the same compiler.
>
> Greg
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 13, 2019 2:07 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hi Greg. Our developer suspects it may be a mismatched
compiler/library
> version. Was BUFRLIB installed with the same compiler as MET?
Also, what
> version of BURRLIB are you using?
>
> Thanks,
> Julie
>
> On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik <jpresto at ucar.edu>
> wrote:
>
> > Hi Greg. I am checking in with another developer regarding the
error you
> > experienced. Thank you for your patience.
> >
> > Julie
> >
> > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1 via RT <met_help at ucar.edu> wrote:
> >
> >>
> >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >>
> >> I was able to build on Red Hat using:
> >>
> >> [ramos at lorenz ~]$ gcc --version
> >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> >> Copyright (C) 2010 Free Software Foundation, Inc.
> >> This is free software; see the source for copying conditions.
There is
> NO
> >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> >> PURPOSE.
> >>
> >> [ramos at lorenz ~]$
> >>
> >> Not all of the tests passed, please see attachment.
> >>
> >> Greg
> >>
> >> -----Original Message-----
> >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> >> Sent: Thursday, May 9, 2019 1:46 PM
> >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> >> Prestopnik
> >>
> >> Thank you for letting me know. I will proceed with trying to
reproduce
> >> the
> >> problem using the gcc-6.3.0. I will follow up once I have more
> >> information.
> >>
> >> Julie
> >>
> >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory, Contractor,
Code
> 7501.1
> >> via RT <met_help at ucar.edu> wrote:
> >>
> >> >
> >> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >> >
> >> > When I compiled MET 8.0 the last time, it worked. I was also
able to
> >> > compile 8.0 on out Cray:
> >> >
> >> > [root at maury ramos]# ssh ramos at leo1
> >> > Password:
> >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> >> >
> >> > *** Welcome to Cray eLogin Server ***
> >> > Running 132MB Suse 12.3
> >> > 16 vcores, boot_memtotal: 257916mb
> >> >
> >> > You are accessing a U.S. Government (USG) Information System
(IS) that
> >> is
> >> > provided for USG-authorized use only.
> >> > By using this IS (which includes any device attached to this
IS), you
> >> > consent to the following conditions:
> >> > -The USG routinely intercepts and monitors communications on
this IS
> for
> >> > purposes including, but not limited to,
> >> > penetration testing, COMSEC monitoring, network operations and
> defense,
> >> > personnel misconduct (PM), law enforcement (LE),
> >> > and counterintelligence (CI) investigations.
> >> > -At any time, the USG may inspect and seize data stored on this
IS.
> >> > -Communications using, or data stored on, this IS are not
private, are
> >> > subject to routine monitoring, interception,
> >> > and search, and may be disclosed or used for any USG-authorized
> purpose.
> >> > -This IS includes security measures (e.g., authentication and
access
> >> > controls) to protect USG interests -- not for
> >> > your personal benefit or privacy.
> >> > -Notwithstanding the above, using this IS does not constitute
consent
> to
> >> > PM, LE or CI investigative searching or
> >> > monitoring of the content of privileged communications, or work
> product,
> >> > related to personal representation or
> >> > services by attorneys, psychotherapists, or clergy, and their
> >> assistants.
> >> > Such communications and work product are
> >> > private and confidential. See User Agreement for details.
> >> >
> >> > ramos at leo1:~> which gcc
> >> > /opt/gcc/7.3.0/bin/gcc
> >> > ramos at leo1:~>
> >> >
> >> > -----Original Message-----
> >> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> >> > Sent: Thursday, May 9, 2019 1:05 PM
> >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> >> > Prestopnik
> >> >
> >> > Hi Gregory. I have not tested with version 6.3.0 of the gcc
compiler,
> >> but
> >> > rather only with lower versions (specifically 4.8.5). We
would, of
> >> course,
> >> > want our code to work with higher versions as well. I have not
yet
> had
> >> an
> >> > opportunity to test with a higher version like 6.3.0. Do you
have the
> >> > ability to compile MET using a lesser version of the gcc
compiler to
> >> see if
> >> > that clears up the issues you are experiencing?
> >> >
> >> > Julie
> >> >
> >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory, Contractor,
Code
> >> 7501.1
> >> > via RT <met_help at ucar.edu> wrote:
> >> >
> >> > >
> >> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> >> > >
> >> > > Any updates or suggestions?
> >> > >
> >> > > Greg
> >> > >
> >> > > -----Original Message-----
> >> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> >> > > Prestopnik
> >> > >
> >> > > Hi Greg. Thank you for passing along your config.log file.
I see a
> >> > couple
> >> > > of linker problems in there:
> >> > >
> >> > > /usr/bin/ld: cannot find -lfl
> >> > >
> >> > > /usr/bin/ld: cannot find -ll
> >> > >
> >> > > Based on those errors, it looks like you may not have flex
and bison
> >> > > installed. Please install those and try running configure
again.
> >> Please
> >> > > let us know how it goes.
> >> > >
> >> > > Also, I just wanted to address one other thing. In your
original
> >> email
> >> > you
> >> > > listed the following as part of your "MET Configuration
settings":
> >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> >> > > -export-dynamic
> >> > >
> >> > > However, in your config.log file it looks like MET_PYTHON_LD
was
> >> actually
> >> > > set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7
> -lpthread
> >> > -ldl
> >> > > -lutil -lm -Xlinker -export-dynamic", which is correct
because you
> >> need
> >> > to
> >> > > have that -L part in there, so I just want to ensure that
will stay
> >> there
> >> > > when you run configure again.
> >> > >
> >> > > Thanks,
> >> > > Julie
> >> > >
> >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
Contractor, Code
> >> > 7501.1
> >> > > via RT <met_help at ucar.edu> wrote:
> >> > >
> >> > > >
> >> > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >> > > >
> >> > > > Configure.log has no meaningful info:
> >> > > >
> >> > > > [ramos at predict met-8.1]$ more configure.log
> >> > > > -bash: [ramos at predict: command not found
> >> > > > [ramos at predict met-8.1]$
> >> > > >
> >> > > >
> >> > > > -----Original Message-----
> >> > > > From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
> >> > > > Sent: Monday, May 6, 2019 4:03 PM
> >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> Julie
> >> > > > Prestopnik
> >> > > >
> >> > > > Hi Greg,
> >> > > >
> >> > > > I'll go ahead and assign this ticket to Julie, and she
should be
> >> > writing
> >> > > > you back in the next couple of days.
> >> > > >
> >> > > > I do know she'll want to see both the "configure.log" file
you
> >> > generated
> >> > > as
> >> > > > well as the "config.log" file from that same directory. So
please
> >> send
> >> > > > those along when you get a chance.
> >> > > >
> >> > > > Thanks,
> >> > > > John
> >> > > >
> >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
Contractor,
> Code
> >> > > 7501.1
> >> > > > via RT <met_help at ucar.edu> wrote:
> >> > > >
> >> > > > >
> >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> >> > > > > Transaction: Ticket created by
Greg.Ramos.ctr at nrlmry.navy.mil
> >> > > > > Queue: met_help
> >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> >> > > > > Owner: Nobody
> >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> >> > > > > Status: new
> >> > > > > Ticket <URL:
> >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> >> > > >
> >> > > > >
> >> > > > >
> >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda
2.4.0.
> >> The
> >> > > user
> >> > > > > asked for 8.1. I took notes last time, but running into
> problems:
> >> > > > >
> >> > > > > MET Configuration settings...
> >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> >> > > > > export
> >> > > > >
> >> >
> MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> >> > > > > export
> >> > MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> >> > > > > export MET_GSL=/software/depot/met-8.1/external_libs
> >> > > > > export
> >> > MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> >> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> >> > -fno-strict-aliasing
> >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
prototypes
> >> > > > > export MET_HDF=/software/depot/met-8.1/external_libs
> >> > > > > export
> >> > > > >
> >> > > >
> >> > >
> >> >
> >>
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> >> > > > > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> >> > > > > export MET_NETCDF=/software/depot/met-8.1/external_libs
> >> > > > > export MET_FREETYPELIB=/software/depot/met-
8.1/external_libs/lib
> >> > > > > export MET_CAIROLIB=/software/depot/met-
8.1/external_libs/lib
> >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil
-lm
> >> -Xlinker
> >> > > > > -export-dynamic
> >> > > > > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> >> > > > > export MET_BUFRLIB=/software/depot/met-
8.1/external_libs/lib
> >> > > > > cd /software/depot/met-8.1/met-8.1
> >> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> >> --enable-grib2
> >> > > > > --enable-modis --enable-mode_graphics --enable-lidar2nc
>
> >> > > configure.log
> >> > > > > 2>&1
> >> > > > > configure returned with non-zero (127) status
> >> > > > >
> >> > > > >
> >> > > >
> >> > > >
> >> > > >
> >> > >
> >> > >
> >> > >
> >> > >
> >> >
> >> >
> >> >
> >> >
> >>
> >>
> >>
>
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Mon May 13 15:16:46 2019
[ramos at lorenz ~]$ which pb2nc
/software/depot/met-8.1/met-8.1/bin/pb2nc
[ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-8.1/bin/pb2nc |grep
gfortran
libgfortran.so.4 => /software/depot/anaconda-
2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
[ramos at lorenz ~]$
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Monday, May 13, 2019 2:15 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Could you please run the following:
which pb2nc
ldd <full path to pb2nc> | grep gfortran
and send me the output?
Please also send your config.log and make.log file.
Thank you!
Julie
On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> I used the buildscript. It should build all of the external
libraries, so
> I believe everything was built with the same compiler.
>
> Greg
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 13, 2019 2:07 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hi Greg. Our developer suspects it may be a mismatched
compiler/library
> version. Was BUFRLIB installed with the same compiler as MET?
Also, what
> version of BURRLIB are you using?
>
> Thanks,
> Julie
>
> On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik <jpresto at ucar.edu>
> wrote:
>
> > Hi Greg. I am checking in with another developer regarding the
error you
> > experienced. Thank you for your patience.
> >
> > Julie
> >
> > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1 via RT <met_help at ucar.edu> wrote:
> >
> >>
> >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >>
> >> I was able to build on Red Hat using:
> >>
> >> [ramos at lorenz ~]$ gcc --version
> >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> >> Copyright (C) 2010 Free Software Foundation, Inc.
> >> This is free software; see the source for copying conditions.
There is
> NO
> >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> >> PURPOSE.
> >>
> >> [ramos at lorenz ~]$
> >>
> >> Not all of the tests passed, please see attachment.
> >>
> >> Greg
> >>
> >> -----Original Message-----
> >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> >> Sent: Thursday, May 9, 2019 1:46 PM
> >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> >> Prestopnik
> >>
> >> Thank you for letting me know. I will proceed with trying to
reproduce
> >> the
> >> problem using the gcc-6.3.0. I will follow up once I have more
> >> information.
> >>
> >> Julie
> >>
> >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory, Contractor,
Code
> 7501.1
> >> via RT <met_help at ucar.edu> wrote:
> >>
> >> >
> >> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >> >
> >> > When I compiled MET 8.0 the last time, it worked. I was also
able to
> >> > compile 8.0 on out Cray:
> >> >
> >> > [root at maury ramos]# ssh ramos at leo1
> >> > Password:
> >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> >> >
> >> > *** Welcome to Cray eLogin Server ***
> >> > Running 132MB Suse 12.3
> >> > 16 vcores, boot_memtotal: 257916mb
> >> >
> >> > You are accessing a U.S. Government (USG) Information System
(IS) that
> >> is
> >> > provided for USG-authorized use only.
> >> > By using this IS (which includes any device attached to this
IS), you
> >> > consent to the following conditions:
> >> > -The USG routinely intercepts and monitors communications on
this IS
> for
> >> > purposes including, but not limited to,
> >> > penetration testing, COMSEC monitoring, network operations and
> defense,
> >> > personnel misconduct (PM), law enforcement (LE),
> >> > and counterintelligence (CI) investigations.
> >> > -At any time, the USG may inspect and seize data stored on this
IS.
> >> > -Communications using, or data stored on, this IS are not
private, are
> >> > subject to routine monitoring, interception,
> >> > and search, and may be disclosed or used for any USG-authorized
> purpose.
> >> > -This IS includes security measures (e.g., authentication and
access
> >> > controls) to protect USG interests -- not for
> >> > your personal benefit or privacy.
> >> > -Notwithstanding the above, using this IS does not constitute
consent
> to
> >> > PM, LE or CI investigative searching or
> >> > monitoring of the content of privileged communications, or work
> product,
> >> > related to personal representation or
> >> > services by attorneys, psychotherapists, or clergy, and their
> >> assistants.
> >> > Such communications and work product are
> >> > private and confidential. See User Agreement for details.
> >> >
> >> > ramos at leo1:~> which gcc
> >> > /opt/gcc/7.3.0/bin/gcc
> >> > ramos at leo1:~>
> >> >
> >> > -----Original Message-----
> >> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> >> > Sent: Thursday, May 9, 2019 1:05 PM
> >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> >> > Prestopnik
> >> >
> >> > Hi Gregory. I have not tested with version 6.3.0 of the gcc
compiler,
> >> but
> >> > rather only with lower versions (specifically 4.8.5). We
would, of
> >> course,
> >> > want our code to work with higher versions as well. I have not
yet
> had
> >> an
> >> > opportunity to test with a higher version like 6.3.0. Do you
have the
> >> > ability to compile MET using a lesser version of the gcc
compiler to
> >> see if
> >> > that clears up the issues you are experiencing?
> >> >
> >> > Julie
> >> >
> >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory, Contractor,
Code
> >> 7501.1
> >> > via RT <met_help at ucar.edu> wrote:
> >> >
> >> > >
> >> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> >> > >
> >> > > Any updates or suggestions?
> >> > >
> >> > > Greg
> >> > >
> >> > > -----Original Message-----
> >> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> >> > > Prestopnik
> >> > >
> >> > > Hi Greg. Thank you for passing along your config.log file.
I see a
> >> > couple
> >> > > of linker problems in there:
> >> > >
> >> > > /usr/bin/ld: cannot find -lfl
> >> > >
> >> > > /usr/bin/ld: cannot find -ll
> >> > >
> >> > > Based on those errors, it looks like you may not have flex
and bison
> >> > > installed. Please install those and try running configure
again.
> >> Please
> >> > > let us know how it goes.
> >> > >
> >> > > Also, I just wanted to address one other thing. In your
original
> >> email
> >> > you
> >> > > listed the following as part of your "MET Configuration
settings":
> >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> >> > > -export-dynamic
> >> > >
> >> > > However, in your config.log file it looks like MET_PYTHON_LD
was
> >> actually
> >> > > set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7
> -lpthread
> >> > -ldl
> >> > > -lutil -lm -Xlinker -export-dynamic", which is correct
because you
> >> need
> >> > to
> >> > > have that -L part in there, so I just want to ensure that
will stay
> >> there
> >> > > when you run configure again.
> >> > >
> >> > > Thanks,
> >> > > Julie
> >> > >
> >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
Contractor, Code
> >> > 7501.1
> >> > > via RT <met_help at ucar.edu> wrote:
> >> > >
> >> > > >
> >> > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >> > > >
> >> > > > Configure.log has no meaningful info:
> >> > > >
> >> > > > [ramos at predict met-8.1]$ more configure.log
> >> > > > -bash: [ramos at predict: command not found
> >> > > > [ramos at predict met-8.1]$
> >> > > >
> >> > > >
> >> > > > -----Original Message-----
> >> > > > From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
> >> > > > Sent: Monday, May 6, 2019 4:03 PM
> >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> Julie
> >> > > > Prestopnik
> >> > > >
> >> > > > Hi Greg,
> >> > > >
> >> > > > I'll go ahead and assign this ticket to Julie, and she
should be
> >> > writing
> >> > > > you back in the next couple of days.
> >> > > >
> >> > > > I do know she'll want to see both the "configure.log" file
you
> >> > generated
> >> > > as
> >> > > > well as the "config.log" file from that same directory. So
please
> >> send
> >> > > > those along when you get a chance.
> >> > > >
> >> > > > Thanks,
> >> > > > John
> >> > > >
> >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
Contractor,
> Code
> >> > > 7501.1
> >> > > > via RT <met_help at ucar.edu> wrote:
> >> > > >
> >> > > > >
> >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> >> > > > > Transaction: Ticket created by
Greg.Ramos.ctr at nrlmry.navy.mil
> >> > > > > Queue: met_help
> >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> >> > > > > Owner: Nobody
> >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> >> > > > > Status: new
> >> > > > > Ticket <URL:
> >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> >> > > >
> >> > > > >
> >> > > > >
> >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda
2.4.0.
> >> The
> >> > > user
> >> > > > > asked for 8.1. I took notes last time, but running into
> problems:
> >> > > > >
> >> > > > > MET Configuration settings...
> >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> >> > > > > export
> >> > > > >
> >> >
> MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> >> > > > > export
> >> > MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> >> > > > > export MET_GSL=/software/depot/met-8.1/external_libs
> >> > > > > export
> >> > MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> >> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> >> > -fno-strict-aliasing
> >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
prototypes
> >> > > > > export MET_HDF=/software/depot/met-8.1/external_libs
> >> > > > > export
> >> > > > >
> >> > > >
> >> > >
> >> >
> >>
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> >> > > > > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> >> > > > > export MET_NETCDF=/software/depot/met-8.1/external_libs
> >> > > > > export MET_FREETYPELIB=/software/depot/met-
8.1/external_libs/lib
> >> > > > > export MET_CAIROLIB=/software/depot/met-
8.1/external_libs/lib
> >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil
-lm
> >> -Xlinker
> >> > > > > -export-dynamic
> >> > > > > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> >> > > > > export MET_BUFRLIB=/software/depot/met-
8.1/external_libs/lib
> >> > > > > cd /software/depot/met-8.1/met-8.1
> >> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> >> --enable-grib2
> >> > > > > --enable-modis --enable-mode_graphics --enable-lidar2nc
>
> >> > > configure.log
> >> > > > > 2>&1
> >> > > > > configure returned with non-zero (127) status
> >> > > > >
> >> > > > >
> >> > > >
> >> > > >
> >> > > >
> >> > >
> >> > >
> >> > >
> >> > >
> >> >
> >> >
> >> >
> >> >
> >>
> >>
> >>
>
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Mon May 13 15:20:49 2019
Find the logs attached.
Greg
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Monday, May 13, 2019 2:15 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Could you please run the following:
which pb2nc
ldd <full path to pb2nc> | grep gfortran
and send me the output?
Please also send your config.log and make.log file.
Thank you!
Julie
On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> I used the buildscript. It should build all of the external
libraries, so
> I believe everything was built with the same compiler.
>
> Greg
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 13, 2019 2:07 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hi Greg. Our developer suspects it may be a mismatched
compiler/library
> version. Was BUFRLIB installed with the same compiler as MET?
Also, what
> version of BURRLIB are you using?
>
> Thanks,
> Julie
>
> On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik <jpresto at ucar.edu>
> wrote:
>
> > Hi Greg. I am checking in with another developer regarding the
error you
> > experienced. Thank you for your patience.
> >
> > Julie
> >
> > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1 via RT <met_help at ucar.edu> wrote:
> >
> >>
> >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >>
> >> I was able to build on Red Hat using:
> >>
> >> [ramos at lorenz ~]$ gcc --version
> >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> >> Copyright (C) 2010 Free Software Foundation, Inc.
> >> This is free software; see the source for copying conditions.
There is
> NO
> >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> >> PURPOSE.
> >>
> >> [ramos at lorenz ~]$
> >>
> >> Not all of the tests passed, please see attachment.
> >>
> >> Greg
> >>
> >> -----Original Message-----
> >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> >> Sent: Thursday, May 9, 2019 1:46 PM
> >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> >> Prestopnik
> >>
> >> Thank you for letting me know. I will proceed with trying to
reproduce
> >> the
> >> problem using the gcc-6.3.0. I will follow up once I have more
> >> information.
> >>
> >> Julie
> >>
> >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory, Contractor,
Code
> 7501.1
> >> via RT <met_help at ucar.edu> wrote:
> >>
> >> >
> >> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >> >
> >> > When I compiled MET 8.0 the last time, it worked. I was also
able to
> >> > compile 8.0 on out Cray:
> >> >
> >> > [root at maury ramos]# ssh ramos at leo1
> >> > Password:
> >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> >> >
> >> > *** Welcome to Cray eLogin Server ***
> >> > Running 132MB Suse 12.3
> >> > 16 vcores, boot_memtotal: 257916mb
> >> >
> >> > You are accessing a U.S. Government (USG) Information System
(IS) that
> >> is
> >> > provided for USG-authorized use only.
> >> > By using this IS (which includes any device attached to this
IS), you
> >> > consent to the following conditions:
> >> > -The USG routinely intercepts and monitors communications on
this IS
> for
> >> > purposes including, but not limited to,
> >> > penetration testing, COMSEC monitoring, network operations and
> defense,
> >> > personnel misconduct (PM), law enforcement (LE),
> >> > and counterintelligence (CI) investigations.
> >> > -At any time, the USG may inspect and seize data stored on this
IS.
> >> > -Communications using, or data stored on, this IS are not
private, are
> >> > subject to routine monitoring, interception,
> >> > and search, and may be disclosed or used for any USG-authorized
> purpose.
> >> > -This IS includes security measures (e.g., authentication and
access
> >> > controls) to protect USG interests -- not for
> >> > your personal benefit or privacy.
> >> > -Notwithstanding the above, using this IS does not constitute
consent
> to
> >> > PM, LE or CI investigative searching or
> >> > monitoring of the content of privileged communications, or work
> product,
> >> > related to personal representation or
> >> > services by attorneys, psychotherapists, or clergy, and their
> >> assistants.
> >> > Such communications and work product are
> >> > private and confidential. See User Agreement for details.
> >> >
> >> > ramos at leo1:~> which gcc
> >> > /opt/gcc/7.3.0/bin/gcc
> >> > ramos at leo1:~>
> >> >
> >> > -----Original Message-----
> >> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> >> > Sent: Thursday, May 9, 2019 1:05 PM
> >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> >> > Prestopnik
> >> >
> >> > Hi Gregory. I have not tested with version 6.3.0 of the gcc
compiler,
> >> but
> >> > rather only with lower versions (specifically 4.8.5). We
would, of
> >> course,
> >> > want our code to work with higher versions as well. I have not
yet
> had
> >> an
> >> > opportunity to test with a higher version like 6.3.0. Do you
have the
> >> > ability to compile MET using a lesser version of the gcc
compiler to
> >> see if
> >> > that clears up the issues you are experiencing?
> >> >
> >> > Julie
> >> >
> >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory, Contractor,
Code
> >> 7501.1
> >> > via RT <met_help at ucar.edu> wrote:
> >> >
> >> > >
> >> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> >> > >
> >> > > Any updates or suggestions?
> >> > >
> >> > > Greg
> >> > >
> >> > > -----Original Message-----
> >> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> >> > > Prestopnik
> >> > >
> >> > > Hi Greg. Thank you for passing along your config.log file.
I see a
> >> > couple
> >> > > of linker problems in there:
> >> > >
> >> > > /usr/bin/ld: cannot find -lfl
> >> > >
> >> > > /usr/bin/ld: cannot find -ll
> >> > >
> >> > > Based on those errors, it looks like you may not have flex
and bison
> >> > > installed. Please install those and try running configure
again.
> >> Please
> >> > > let us know how it goes.
> >> > >
> >> > > Also, I just wanted to address one other thing. In your
original
> >> email
> >> > you
> >> > > listed the following as part of your "MET Configuration
settings":
> >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
-Xlinker
> >> > > -export-dynamic
> >> > >
> >> > > However, in your config.log file it looks like MET_PYTHON_LD
was
> >> actually
> >> > > set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7
> -lpthread
> >> > -ldl
> >> > > -lutil -lm -Xlinker -export-dynamic", which is correct
because you
> >> need
> >> > to
> >> > > have that -L part in there, so I just want to ensure that
will stay
> >> there
> >> > > when you run configure again.
> >> > >
> >> > > Thanks,
> >> > > Julie
> >> > >
> >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
Contractor, Code
> >> > 7501.1
> >> > > via RT <met_help at ucar.edu> wrote:
> >> > >
> >> > > >
> >> > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >> > > >
> >> > > > Configure.log has no meaningful info:
> >> > > >
> >> > > > [ramos at predict met-8.1]$ more configure.log
> >> > > > -bash: [ramos at predict: command not found
> >> > > > [ramos at predict met-8.1]$
> >> > > >
> >> > > >
> >> > > > -----Original Message-----
> >> > > > From: John Halley Gotway via RT [mailto:met_help at ucar.edu]
> >> > > > Sent: Monday, May 6, 2019 4:03 PM
> >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> Julie
> >> > > > Prestopnik
> >> > > >
> >> > > > Hi Greg,
> >> > > >
> >> > > > I'll go ahead and assign this ticket to Julie, and she
should be
> >> > writing
> >> > > > you back in the next couple of days.
> >> > > >
> >> > > > I do know she'll want to see both the "configure.log" file
you
> >> > generated
> >> > > as
> >> > > > well as the "config.log" file from that same directory. So
please
> >> send
> >> > > > those along when you get a chance.
> >> > > >
> >> > > > Thanks,
> >> > > > John
> >> > > >
> >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
Contractor,
> Code
> >> > > 7501.1
> >> > > > via RT <met_help at ucar.edu> wrote:
> >> > > >
> >> > > > >
> >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> >> > > > > Transaction: Ticket created by
Greg.Ramos.ctr at nrlmry.navy.mil
> >> > > > > Queue: met_help
> >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> >> > > > > Owner: Nobody
> >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> >> > > > > Status: new
> >> > > > > Ticket <URL:
> >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> >> > > >
> >> > > > >
> >> > > > >
> >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and Anaconda
2.4.0.
> >> The
> >> > > user
> >> > > > > asked for 8.1. I took notes last time, but running into
> problems:
> >> > > > >
> >> > > > > MET Configuration settings...
> >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> >> > > > > export
> >> > > > >
> >> >
> MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> >> > > > > export
> >> > MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> >> > > > > export MET_GSL=/software/depot/met-8.1/external_libs
> >> > > > > export
> >> > MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> >> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> >> > -fno-strict-aliasing
> >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
prototypes
> >> > > > > export MET_HDF=/software/depot/met-8.1/external_libs
> >> > > > > export
> >> > > > >
> >> > > >
> >> > >
> >> >
> >>
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> >> > > > > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> >> > > > > export MET_NETCDF=/software/depot/met-8.1/external_libs
> >> > > > > export MET_FREETYPELIB=/software/depot/met-
8.1/external_libs/lib
> >> > > > > export MET_CAIROLIB=/software/depot/met-
8.1/external_libs/lib
> >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil
-lm
> >> -Xlinker
> >> > > > > -export-dynamic
> >> > > > > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> >> > > > > export MET_BUFRLIB=/software/depot/met-
8.1/external_libs/lib
> >> > > > > cd /software/depot/met-8.1/met-8.1
> >> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> >> --enable-grib2
> >> > > > > --enable-modis --enable-mode_graphics --enable-lidar2nc
>
> >> > > configure.log
> >> > > > > 2>&1
> >> > > > > configure returned with non-zero (127) status
> >> > > > >
> >> > > > >
> >> > > >
> >> > > >
> >> > > >
> >> > >
> >> > >
> >> > >
> >> > >
> >> >
> >> >
> >> >
> >> >
> >>
> >>
> >>
>
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Julie Prestopnik
Time: Mon May 13 17:26:04 2019
Thank you, Greg. Can you please tell me - were the libraries and the
MET
code built with the same version of the compiler. I'm checking to see
if,
for example, the libraries were built with gcc-6.3.0 but the MET code
was
build with gcc-4.4.7.
It sounds like we need the libraries and the MET code to be built with
the
same version of the compiler, in this case.
Thanks for any information you can provide.
Julie
On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> Find the logs attached.
>
> Greg
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 13, 2019 2:15 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Could you please run the following:
>
> which pb2nc
> ldd <full path to pb2nc> | grep gfortran
>
> and send me the output?
>
> Please also send your config.log and make.log file.
>
> Thank you!
>
> Julie
>
> On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > I used the buildscript. It should build all of the external
libraries, so
> > I believe everything was built with the same compiler.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 2:07 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Hi Greg. Our developer suspects it may be a mismatched
compiler/library
> > version. Was BUFRLIB installed with the same compiler as MET?
Also,
> what
> > version of BURRLIB are you using?
> >
> > Thanks,
> > Julie
> >
> > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
<jpresto at ucar.edu>
> > wrote:
> >
> > > Hi Greg. I am checking in with another developer regarding the
error
> you
> > > experienced. Thank you for your patience.
> > >
> > > Julie
> > >
> > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory, Contractor,
Code
> > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > >
> > >>
> > >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >>
> > >> I was able to build on Red Hat using:
> > >>
> > >> [ramos at lorenz ~]$ gcc --version
> > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > >> This is free software; see the source for copying conditions.
There
> is
> > NO
> > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > >> PURPOSE.
> > >>
> > >> [ramos at lorenz ~]$
> > >>
> > >> Not all of the tests passed, please see attachment.
> > >>
> > >> Greg
> > >>
> > >> -----Original Message-----
> > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > >> Sent: Thursday, May 9, 2019 1:46 PM
> > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > >> Prestopnik
> > >>
> > >> Thank you for letting me know. I will proceed with trying to
> reproduce
> > >> the
> > >> problem using the gcc-6.3.0. I will follow up once I have more
> > >> information.
> > >>
> > >> Julie
> > >>
> > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1
> > >> via RT <met_help at ucar.edu> wrote:
> > >>
> > >> >
> > >> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > >> >
> > >> > When I compiled MET 8.0 the last time, it worked. I was also
able to
> > >> > compile 8.0 on out Cray:
> > >> >
> > >> > [root at maury ramos]# ssh ramos at leo1
> > >> > Password:
> > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > >> >
> > >> > *** Welcome to Cray eLogin Server ***
> > >> > Running 132MB Suse 12.3
> > >> > 16 vcores, boot_memtotal: 257916mb
> > >> >
> > >> > You are accessing a U.S. Government (USG) Information System
(IS)
> that
> > >> is
> > >> > provided for USG-authorized use only.
> > >> > By using this IS (which includes any device attached to this
IS),
> you
> > >> > consent to the following conditions:
> > >> > -The USG routinely intercepts and monitors communications on
this IS
> > for
> > >> > purposes including, but not limited to,
> > >> > penetration testing, COMSEC monitoring, network operations
and
> > defense,
> > >> > personnel misconduct (PM), law enforcement (LE),
> > >> > and counterintelligence (CI) investigations.
> > >> > -At any time, the USG may inspect and seize data stored on
this IS.
> > >> > -Communications using, or data stored on, this IS are not
private,
> are
> > >> > subject to routine monitoring, interception,
> > >> > and search, and may be disclosed or used for any USG-
authorized
> > purpose.
> > >> > -This IS includes security measures (e.g., authentication and
access
> > >> > controls) to protect USG interests -- not for
> > >> > your personal benefit or privacy.
> > >> > -Notwithstanding the above, using this IS does not constitute
> consent
> > to
> > >> > PM, LE or CI investigative searching or
> > >> > monitoring of the content of privileged communications, or
work
> > product,
> > >> > related to personal representation or
> > >> > services by attorneys, psychotherapists, or clergy, and their
> > >> assistants.
> > >> > Such communications and work product are
> > >> > private and confidential. See User Agreement for details.
> > >> >
> > >> > ramos at leo1:~> which gcc
> > >> > /opt/gcc/7.3.0/bin/gcc
> > >> > ramos at leo1:~>
> > >> >
> > >> > -----Original Message-----
> > >> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > >> > Prestopnik
> > >> >
> > >> > Hi Gregory. I have not tested with version 6.3.0 of the gcc
> compiler,
> > >> but
> > >> > rather only with lower versions (specifically 4.8.5). We
would, of
> > >> course,
> > >> > want our code to work with higher versions as well. I have
not yet
> > had
> > >> an
> > >> > opportunity to test with a higher version like 6.3.0. Do you
have
> the
> > >> > ability to compile MET using a lesser version of the gcc
compiler to
> > >> see if
> > >> > that clears up the issues you are experiencing?
> > >> >
> > >> > Julie
> > >> >
> > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
Contractor, Code
> > >> 7501.1
> > >> > via RT <met_help at ucar.edu> wrote:
> > >> >
> > >> > >
> > >> > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >> > >
> > >> > > Any updates or suggestions?
> > >> > >
> > >> > > Greg
> > >> > >
> > >> > > -----Original Message-----
> > >> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> Julie
> > >> > > Prestopnik
> > >> > >
> > >> > > Hi Greg. Thank you for passing along your config.log file.
I
> see a
> > >> > couple
> > >> > > of linker problems in there:
> > >> > >
> > >> > > /usr/bin/ld: cannot find -lfl
> > >> > >
> > >> > > /usr/bin/ld: cannot find -ll
> > >> > >
> > >> > > Based on those errors, it looks like you may not have flex
and
> bison
> > >> > > installed. Please install those and try running configure
again.
> > >> Please
> > >> > > let us know how it goes.
> > >> > >
> > >> > > Also, I just wanted to address one other thing. In your
original
> > >> email
> > >> > you
> > >> > > listed the following as part of your "MET Configuration
settings":
> > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
> -Xlinker
> > >> > > -export-dynamic
> > >> > >
> > >> > > However, in your config.log file it looks like
MET_PYTHON_LD was
> > >> actually
> > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7
> > -lpthread
> > >> > -ldl
> > >> > > -lutil -lm -Xlinker -export-dynamic", which is correct
because you
> > >> need
> > >> > to
> > >> > > have that -L part in there, so I just want to ensure that
will
> stay
> > >> there
> > >> > > when you run configure again.
> > >> > >
> > >> > > Thanks,
> > >> > > Julie
> > >> > >
> > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
Contractor,
> Code
> > >> > 7501.1
> > >> > > via RT <met_help at ucar.edu> wrote:
> > >> > >
> > >> > > >
> > >> > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >> > > >
> > >> > > > Configure.log has no meaningful info:
> > >> > > >
> > >> > > > [ramos at predict met-8.1]$ more configure.log
> > >> > > > -bash: [ramos at predict: command not found
> > >> > > > [ramos at predict met-8.1]$
> > >> > > >
> > >> > > >
> > >> > > > -----Original Message-----
> > >> > > > From: John Halley Gotway via RT
[mailto:met_help at ucar.edu]
> > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > Julie
> > >> > > > Prestopnik
> > >> > > >
> > >> > > > Hi Greg,
> > >> > > >
> > >> > > > I'll go ahead and assign this ticket to Julie, and she
should be
> > >> > writing
> > >> > > > you back in the next couple of days.
> > >> > > >
> > >> > > > I do know she'll want to see both the "configure.log"
file you
> > >> > generated
> > >> > > as
> > >> > > > well as the "config.log" file from that same directory.
So
> please
> > >> send
> > >> > > > those along when you get a chance.
> > >> > > >
> > >> > > > Thanks,
> > >> > > > John
> > >> > > >
> > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
Contractor,
> > Code
> > >> > > 7501.1
> > >> > > > via RT <met_help at ucar.edu> wrote:
> > >> > > >
> > >> > > > >
> > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> > >> > > > > Transaction: Ticket created by
Greg.Ramos.ctr at nrlmry.navy.mil
> > >> > > > > Queue: met_help
> > >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > >> > > > > Owner: Nobody
> > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > >> > > > > Status: new
> > >> > > > > Ticket <URL:
> > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > >> > > >
> > >> > > > >
> > >> > > > >
> > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
Anaconda
> 2.4.0.
> > >> The
> > >> > > user
> > >> > > > > asked for 8.1. I took notes last time, but running into
> > problems:
> > >> > > > >
> > >> > > > > MET Configuration settings...
> > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > >> > > > > export
> > >> > > > >
> > >> >
> > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > >> > > > > export
> > >> > MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > >> > > > > export MET_GSL=/software/depot/met-8.1/external_libs
> > >> > > > > export
> > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > >> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> > >> > -fno-strict-aliasing
> > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
prototypes
> > >> > > > > export MET_HDF=/software/depot/met-8.1/external_libs
> > >> > > > > export
> > >> > > > >
> > >> > > >
> > >> > >
> > >> >
> > >>
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > >> > > > > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> > >> > > > > export MET_NETCDF=/software/depot/met-8.1/external_libs
> > >> > > > > export
> MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > >> > > > > export MET_CAIROLIB=/software/depot/met-
8.1/external_libs/lib
> > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil
-lm
> > >> -Xlinker
> > >> > > > > -export-dynamic
> > >> > > > > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > >> > > > > export MET_BUFRLIB=/software/depot/met-
8.1/external_libs/lib
> > >> > > > > cd /software/depot/met-8.1/met-8.1
> > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > >> --enable-grib2
> > >> > > > > --enable-modis --enable-mode_graphics --enable-lidar2nc
>
> > >> > > configure.log
> > >> > > > > 2>&1
> > >> > > > > configure returned with non-zero (127) status
> > >> > > > >
> > >> > > > >
> > >> > > >
> > >> > > >
> > >> > > >
> > >> > >
> > >> > >
> > >> > >
> > >> > >
> > >> >
> > >> >
> > >> >
> > >> >
> > >>
> > >>
> > >>
> >
> >
> >
> >
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Mon May 13 17:34:34 2019
I previously sent you the directory of the libraries and the MET 8.1
with the timestamps.
Greg
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Monday, May 13, 2019 4:26 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Thank you, Greg. Can you please tell me - were the libraries and the
MET
code built with the same version of the compiler. I'm checking to see
if,
for example, the libraries were built with gcc-6.3.0 but the MET code
was
build with gcc-4.4.7.
It sounds like we need the libraries and the MET code to be built with
the
same version of the compiler, in this case.
Thanks for any information you can provide.
Julie
On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> Find the logs attached.
>
> Greg
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 13, 2019 2:15 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Could you please run the following:
>
> which pb2nc
> ldd <full path to pb2nc> | grep gfortran
>
> and send me the output?
>
> Please also send your config.log and make.log file.
>
> Thank you!
>
> Julie
>
> On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > I used the buildscript. It should build all of the external
libraries, so
> > I believe everything was built with the same compiler.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 2:07 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Hi Greg. Our developer suspects it may be a mismatched
compiler/library
> > version. Was BUFRLIB installed with the same compiler as MET?
Also,
> what
> > version of BURRLIB are you using?
> >
> > Thanks,
> > Julie
> >
> > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
<jpresto at ucar.edu>
> > wrote:
> >
> > > Hi Greg. I am checking in with another developer regarding the
error
> you
> > > experienced. Thank you for your patience.
> > >
> > > Julie
> > >
> > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory, Contractor,
Code
> > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > >
> > >>
> > >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >>
> > >> I was able to build on Red Hat using:
> > >>
> > >> [ramos at lorenz ~]$ gcc --version
> > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > >> This is free software; see the source for copying conditions.
There
> is
> > NO
> > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > >> PURPOSE.
> > >>
> > >> [ramos at lorenz ~]$
> > >>
> > >> Not all of the tests passed, please see attachment.
> > >>
> > >> Greg
> > >>
> > >> -----Original Message-----
> > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > >> Sent: Thursday, May 9, 2019 1:46 PM
> > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > >> Prestopnik
> > >>
> > >> Thank you for letting me know. I will proceed with trying to
> reproduce
> > >> the
> > >> problem using the gcc-6.3.0. I will follow up once I have more
> > >> information.
> > >>
> > >> Julie
> > >>
> > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1
> > >> via RT <met_help at ucar.edu> wrote:
> > >>
> > >> >
> > >> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > >> >
> > >> > When I compiled MET 8.0 the last time, it worked. I was also
able to
> > >> > compile 8.0 on out Cray:
> > >> >
> > >> > [root at maury ramos]# ssh ramos at leo1
> > >> > Password:
> > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > >> >
> > >> > *** Welcome to Cray eLogin Server ***
> > >> > Running 132MB Suse 12.3
> > >> > 16 vcores, boot_memtotal: 257916mb
> > >> >
> > >> > You are accessing a U.S. Government (USG) Information System
(IS)
> that
> > >> is
> > >> > provided for USG-authorized use only.
> > >> > By using this IS (which includes any device attached to this
IS),
> you
> > >> > consent to the following conditions:
> > >> > -The USG routinely intercepts and monitors communications on
this IS
> > for
> > >> > purposes including, but not limited to,
> > >> > penetration testing, COMSEC monitoring, network operations
and
> > defense,
> > >> > personnel misconduct (PM), law enforcement (LE),
> > >> > and counterintelligence (CI) investigations.
> > >> > -At any time, the USG may inspect and seize data stored on
this IS.
> > >> > -Communications using, or data stored on, this IS are not
private,
> are
> > >> > subject to routine monitoring, interception,
> > >> > and search, and may be disclosed or used for any USG-
authorized
> > purpose.
> > >> > -This IS includes security measures (e.g., authentication and
access
> > >> > controls) to protect USG interests -- not for
> > >> > your personal benefit or privacy.
> > >> > -Notwithstanding the above, using this IS does not constitute
> consent
> > to
> > >> > PM, LE or CI investigative searching or
> > >> > monitoring of the content of privileged communications, or
work
> > product,
> > >> > related to personal representation or
> > >> > services by attorneys, psychotherapists, or clergy, and their
> > >> assistants.
> > >> > Such communications and work product are
> > >> > private and confidential. See User Agreement for details.
> > >> >
> > >> > ramos at leo1:~> which gcc
> > >> > /opt/gcc/7.3.0/bin/gcc
> > >> > ramos at leo1:~>
> > >> >
> > >> > -----Original Message-----
> > >> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > >> > Prestopnik
> > >> >
> > >> > Hi Gregory. I have not tested with version 6.3.0 of the gcc
> compiler,
> > >> but
> > >> > rather only with lower versions (specifically 4.8.5). We
would, of
> > >> course,
> > >> > want our code to work with higher versions as well. I have
not yet
> > had
> > >> an
> > >> > opportunity to test with a higher version like 6.3.0. Do you
have
> the
> > >> > ability to compile MET using a lesser version of the gcc
compiler to
> > >> see if
> > >> > that clears up the issues you are experiencing?
> > >> >
> > >> > Julie
> > >> >
> > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
Contractor, Code
> > >> 7501.1
> > >> > via RT <met_help at ucar.edu> wrote:
> > >> >
> > >> > >
> > >> > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >> > >
> > >> > > Any updates or suggestions?
> > >> > >
> > >> > > Greg
> > >> > >
> > >> > > -----Original Message-----
> > >> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> Julie
> > >> > > Prestopnik
> > >> > >
> > >> > > Hi Greg. Thank you for passing along your config.log file.
I
> see a
> > >> > couple
> > >> > > of linker problems in there:
> > >> > >
> > >> > > /usr/bin/ld: cannot find -lfl
> > >> > >
> > >> > > /usr/bin/ld: cannot find -ll
> > >> > >
> > >> > > Based on those errors, it looks like you may not have flex
and
> bison
> > >> > > installed. Please install those and try running configure
again.
> > >> Please
> > >> > > let us know how it goes.
> > >> > >
> > >> > > Also, I just wanted to address one other thing. In your
original
> > >> email
> > >> > you
> > >> > > listed the following as part of your "MET Configuration
settings":
> > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
> -Xlinker
> > >> > > -export-dynamic
> > >> > >
> > >> > > However, in your config.log file it looks like
MET_PYTHON_LD was
> > >> actually
> > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7
> > -lpthread
> > >> > -ldl
> > >> > > -lutil -lm -Xlinker -export-dynamic", which is correct
because you
> > >> need
> > >> > to
> > >> > > have that -L part in there, so I just want to ensure that
will
> stay
> > >> there
> > >> > > when you run configure again.
> > >> > >
> > >> > > Thanks,
> > >> > > Julie
> > >> > >
> > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
Contractor,
> Code
> > >> > 7501.1
> > >> > > via RT <met_help at ucar.edu> wrote:
> > >> > >
> > >> > > >
> > >> > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >> > > >
> > >> > > > Configure.log has no meaningful info:
> > >> > > >
> > >> > > > [ramos at predict met-8.1]$ more configure.log
> > >> > > > -bash: [ramos at predict: command not found
> > >> > > > [ramos at predict met-8.1]$
> > >> > > >
> > >> > > >
> > >> > > > -----Original Message-----
> > >> > > > From: John Halley Gotway via RT
[mailto:met_help at ucar.edu]
> > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > Julie
> > >> > > > Prestopnik
> > >> > > >
> > >> > > > Hi Greg,
> > >> > > >
> > >> > > > I'll go ahead and assign this ticket to Julie, and she
should be
> > >> > writing
> > >> > > > you back in the next couple of days.
> > >> > > >
> > >> > > > I do know she'll want to see both the "configure.log"
file you
> > >> > generated
> > >> > > as
> > >> > > > well as the "config.log" file from that same directory.
So
> please
> > >> send
> > >> > > > those along when you get a chance.
> > >> > > >
> > >> > > > Thanks,
> > >> > > > John
> > >> > > >
> > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
Contractor,
> > Code
> > >> > > 7501.1
> > >> > > > via RT <met_help at ucar.edu> wrote:
> > >> > > >
> > >> > > > >
> > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> > >> > > > > Transaction: Ticket created by
Greg.Ramos.ctr at nrlmry.navy.mil
> > >> > > > > Queue: met_help
> > >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > >> > > > > Owner: Nobody
> > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > >> > > > > Status: new
> > >> > > > > Ticket <URL:
> > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > >> > > >
> > >> > > > >
> > >> > > > >
> > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
Anaconda
> 2.4.0.
> > >> The
> > >> > > user
> > >> > > > > asked for 8.1. I took notes last time, but running into
> > problems:
> > >> > > > >
> > >> > > > > MET Configuration settings...
> > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > >> > > > > export
> > >> > > > >
> > >> >
> > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > >> > > > > export
> > >> > MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > >> > > > > export MET_GSL=/software/depot/met-8.1/external_libs
> > >> > > > > export
> > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > >> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> > >> > -fno-strict-aliasing
> > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
prototypes
> > >> > > > > export MET_HDF=/software/depot/met-8.1/external_libs
> > >> > > > > export
> > >> > > > >
> > >> > > >
> > >> > >
> > >> >
> > >>
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > >> > > > > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> > >> > > > > export MET_NETCDF=/software/depot/met-8.1/external_libs
> > >> > > > > export
> MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > >> > > > > export MET_CAIROLIB=/software/depot/met-
8.1/external_libs/lib
> > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil
-lm
> > >> -Xlinker
> > >> > > > > -export-dynamic
> > >> > > > > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > >> > > > > export MET_BUFRLIB=/software/depot/met-
8.1/external_libs/lib
> > >> > > > > cd /software/depot/met-8.1/met-8.1
> > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > >> --enable-grib2
> > >> > > > > --enable-modis --enable-mode_graphics --enable-lidar2nc
>
> > >> > > configure.log
> > >> > > > > 2>&1
> > >> > > > > configure returned with non-zero (127) status
> > >> > > > >
> > >> > > > >
> > >> > > >
> > >> > > >
> > >> > > >
> > >> > >
> > >> > >
> > >> > >
> > >> > >
> > >> >
> > >> >
> > >> >
> > >> >
> > >>
> > >>
> > >>
> >
> >
> >
> >
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Mon May 13 17:36:21 2019
[root at maury2 modulefiles]# ls -larth /software/depot/met-8.1/met-
8.1/bin
total 395M
-rwxr-xr-x 1 ramos ramos 19M May 11 20:27 ensemble_stat
-rwxr-xr-x 1 ramos ramos 19M May 11 20:27 grid_stat
-rwxr-xr-x 1 ramos ramos 20M May 11 20:27 mode
-rwxr-xr-x 1 ramos ramos 9.2M May 11 20:27 mode_analysis
-rwxr-xr-x 1 ramos ramos 13M May 11 20:27 pcp_combine
-rwxr-xr-x 1 ramos ramos 18M May 11 20:27 point_stat
-rwxr-xr-x 1 ramos ramos 21M May 11 20:27 stat_analysis
-rwxr-xr-x 1 ramos ramos 19M May 11 20:27 wavelet_stat
-rwxr-xr-x 1 ramos ramos 16M May 11 20:27 series_analysis
-rwxr-xr-x 1 ramos ramos 1.3M May 11 20:27 gis_dump_shp
-rwxr-xr-x 1 ramos ramos 1.1M May 11 20:27 gis_dump_shx
-rwxr-xr-x 1 ramos ramos 1023K May 11 20:27 gis_dump_dbf
-rwxr-xr-x 1 ramos ramos 14M May 11 20:27 gen_vx_mask
-rwxr-xr-x 1 ramos ramos 14M May 11 20:27 plot_data_plane
-rwxr-xr-x 1 ramos ramos 13M May 11 20:27 plot_point_obs
-rwxr-xr-x 1 ramos ramos 16M May 11 20:27 ascii2nc
-rwxr-xr-x 1 ramos ramos 3.7M May 11 20:27 lidar2nc
-rwxr-xr-x 1 ramos ramos 15M May 11 20:27 madis2nc
-rwxr-xr-x 1 ramos ramos 16M May 11 20:27 pb2nc
-rwxr-xr-x 1 ramos ramos 14M May 11 20:27 wwmca_regrid
-rwxr-xr-x 1 ramos ramos 15M May 11 20:27 wwmca_plot
-rwxr-xr-x 1 ramos ramos 14M May 11 20:27 modis_regrid
-rwxr-xr-x 1 ramos ramos 7.1M May 11 20:27 plot_mode_field
-rwxr-xr-x 1 ramos ramos 16M May 11 20:27 mtd
-rwxr-xr-x 1 ramos ramos 11M May 11 20:27 gsid2mpr
-rwxr-xr-x 1 ramos ramos 11M May 11 20:27 gsidens2orank
-rwxr-xr-x 1 ramos ramos 14M May 11 20:27 regrid_data_plane
-rwxr-xr-x 1 ramos ramos 13M May 11 20:27 shift_data_plane
-rwxr-xr-x 1 ramos ramos 6.0M May 11 20:27 tc_dland
-rwxr-xr-x 1 ramos ramos 16M May 11 20:27 tc_pairs
-rwxr-xr-x 1 ramos ramos 19M May 11 20:27 tc_stat
drwxr-xr-x 9 ramos ramos 4.0K May 11 20:27 ..
drwxr-xr-x 2 ramos ramos 4.0K May 11 20:44 .
[root at maury2 modulefiles]#
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Monday, May 13, 2019 4:26 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Thank you, Greg. Can you please tell me - were the libraries and the
MET
code built with the same version of the compiler. I'm checking to see
if,
for example, the libraries were built with gcc-6.3.0 but the MET code
was
build with gcc-4.4.7.
It sounds like we need the libraries and the MET code to be built with
the
same version of the compiler, in this case.
Thanks for any information you can provide.
Julie
On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> Find the logs attached.
>
> Greg
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 13, 2019 2:15 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Could you please run the following:
>
> which pb2nc
> ldd <full path to pb2nc> | grep gfortran
>
> and send me the output?
>
> Please also send your config.log and make.log file.
>
> Thank you!
>
> Julie
>
> On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > I used the buildscript. It should build all of the external
libraries, so
> > I believe everything was built with the same compiler.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 2:07 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Hi Greg. Our developer suspects it may be a mismatched
compiler/library
> > version. Was BUFRLIB installed with the same compiler as MET?
Also,
> what
> > version of BURRLIB are you using?
> >
> > Thanks,
> > Julie
> >
> > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
<jpresto at ucar.edu>
> > wrote:
> >
> > > Hi Greg. I am checking in with another developer regarding the
error
> you
> > > experienced. Thank you for your patience.
> > >
> > > Julie
> > >
> > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory, Contractor,
Code
> > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > >
> > >>
> > >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >>
> > >> I was able to build on Red Hat using:
> > >>
> > >> [ramos at lorenz ~]$ gcc --version
> > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > >> This is free software; see the source for copying conditions.
There
> is
> > NO
> > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > >> PURPOSE.
> > >>
> > >> [ramos at lorenz ~]$
> > >>
> > >> Not all of the tests passed, please see attachment.
> > >>
> > >> Greg
> > >>
> > >> -----Original Message-----
> > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > >> Sent: Thursday, May 9, 2019 1:46 PM
> > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > >> Prestopnik
> > >>
> > >> Thank you for letting me know. I will proceed with trying to
> reproduce
> > >> the
> > >> problem using the gcc-6.3.0. I will follow up once I have more
> > >> information.
> > >>
> > >> Julie
> > >>
> > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1
> > >> via RT <met_help at ucar.edu> wrote:
> > >>
> > >> >
> > >> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > >> >
> > >> > When I compiled MET 8.0 the last time, it worked. I was also
able to
> > >> > compile 8.0 on out Cray:
> > >> >
> > >> > [root at maury ramos]# ssh ramos at leo1
> > >> > Password:
> > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > >> >
> > >> > *** Welcome to Cray eLogin Server ***
> > >> > Running 132MB Suse 12.3
> > >> > 16 vcores, boot_memtotal: 257916mb
> > >> >
> > >> > You are accessing a U.S. Government (USG) Information System
(IS)
> that
> > >> is
> > >> > provided for USG-authorized use only.
> > >> > By using this IS (which includes any device attached to this
IS),
> you
> > >> > consent to the following conditions:
> > >> > -The USG routinely intercepts and monitors communications on
this IS
> > for
> > >> > purposes including, but not limited to,
> > >> > penetration testing, COMSEC monitoring, network operations
and
> > defense,
> > >> > personnel misconduct (PM), law enforcement (LE),
> > >> > and counterintelligence (CI) investigations.
> > >> > -At any time, the USG may inspect and seize data stored on
this IS.
> > >> > -Communications using, or data stored on, this IS are not
private,
> are
> > >> > subject to routine monitoring, interception,
> > >> > and search, and may be disclosed or used for any USG-
authorized
> > purpose.
> > >> > -This IS includes security measures (e.g., authentication and
access
> > >> > controls) to protect USG interests -- not for
> > >> > your personal benefit or privacy.
> > >> > -Notwithstanding the above, using this IS does not constitute
> consent
> > to
> > >> > PM, LE or CI investigative searching or
> > >> > monitoring of the content of privileged communications, or
work
> > product,
> > >> > related to personal representation or
> > >> > services by attorneys, psychotherapists, or clergy, and their
> > >> assistants.
> > >> > Such communications and work product are
> > >> > private and confidential. See User Agreement for details.
> > >> >
> > >> > ramos at leo1:~> which gcc
> > >> > /opt/gcc/7.3.0/bin/gcc
> > >> > ramos at leo1:~>
> > >> >
> > >> > -----Original Message-----
> > >> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > >> > Prestopnik
> > >> >
> > >> > Hi Gregory. I have not tested with version 6.3.0 of the gcc
> compiler,
> > >> but
> > >> > rather only with lower versions (specifically 4.8.5). We
would, of
> > >> course,
> > >> > want our code to work with higher versions as well. I have
not yet
> > had
> > >> an
> > >> > opportunity to test with a higher version like 6.3.0. Do you
have
> the
> > >> > ability to compile MET using a lesser version of the gcc
compiler to
> > >> see if
> > >> > that clears up the issues you are experiencing?
> > >> >
> > >> > Julie
> > >> >
> > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
Contractor, Code
> > >> 7501.1
> > >> > via RT <met_help at ucar.edu> wrote:
> > >> >
> > >> > >
> > >> > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >> > >
> > >> > > Any updates or suggestions?
> > >> > >
> > >> > > Greg
> > >> > >
> > >> > > -----Original Message-----
> > >> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> Julie
> > >> > > Prestopnik
> > >> > >
> > >> > > Hi Greg. Thank you for passing along your config.log file.
I
> see a
> > >> > couple
> > >> > > of linker problems in there:
> > >> > >
> > >> > > /usr/bin/ld: cannot find -lfl
> > >> > >
> > >> > > /usr/bin/ld: cannot find -ll
> > >> > >
> > >> > > Based on those errors, it looks like you may not have flex
and
> bison
> > >> > > installed. Please install those and try running configure
again.
> > >> Please
> > >> > > let us know how it goes.
> > >> > >
> > >> > > Also, I just wanted to address one other thing. In your
original
> > >> email
> > >> > you
> > >> > > listed the following as part of your "MET Configuration
settings":
> > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
> -Xlinker
> > >> > > -export-dynamic
> > >> > >
> > >> > > However, in your config.log file it looks like
MET_PYTHON_LD was
> > >> actually
> > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7
> > -lpthread
> > >> > -ldl
> > >> > > -lutil -lm -Xlinker -export-dynamic", which is correct
because you
> > >> need
> > >> > to
> > >> > > have that -L part in there, so I just want to ensure that
will
> stay
> > >> there
> > >> > > when you run configure again.
> > >> > >
> > >> > > Thanks,
> > >> > > Julie
> > >> > >
> > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
Contractor,
> Code
> > >> > 7501.1
> > >> > > via RT <met_help at ucar.edu> wrote:
> > >> > >
> > >> > > >
> > >> > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >> > > >
> > >> > > > Configure.log has no meaningful info:
> > >> > > >
> > >> > > > [ramos at predict met-8.1]$ more configure.log
> > >> > > > -bash: [ramos at predict: command not found
> > >> > > > [ramos at predict met-8.1]$
> > >> > > >
> > >> > > >
> > >> > > > -----Original Message-----
> > >> > > > From: John Halley Gotway via RT
[mailto:met_help at ucar.edu]
> > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > Julie
> > >> > > > Prestopnik
> > >> > > >
> > >> > > > Hi Greg,
> > >> > > >
> > >> > > > I'll go ahead and assign this ticket to Julie, and she
should be
> > >> > writing
> > >> > > > you back in the next couple of days.
> > >> > > >
> > >> > > > I do know she'll want to see both the "configure.log"
file you
> > >> > generated
> > >> > > as
> > >> > > > well as the "config.log" file from that same directory.
So
> please
> > >> send
> > >> > > > those along when you get a chance.
> > >> > > >
> > >> > > > Thanks,
> > >> > > > John
> > >> > > >
> > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
Contractor,
> > Code
> > >> > > 7501.1
> > >> > > > via RT <met_help at ucar.edu> wrote:
> > >> > > >
> > >> > > > >
> > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> > >> > > > > Transaction: Ticket created by
Greg.Ramos.ctr at nrlmry.navy.mil
> > >> > > > > Queue: met_help
> > >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > >> > > > > Owner: Nobody
> > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > >> > > > > Status: new
> > >> > > > > Ticket <URL:
> > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > >> > > >
> > >> > > > >
> > >> > > > >
> > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
Anaconda
> 2.4.0.
> > >> The
> > >> > > user
> > >> > > > > asked for 8.1. I took notes last time, but running into
> > problems:
> > >> > > > >
> > >> > > > > MET Configuration settings...
> > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > >> > > > > export
> > >> > > > >
> > >> >
> > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > >> > > > > export
> > >> > MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > >> > > > > export MET_GSL=/software/depot/met-8.1/external_libs
> > >> > > > > export
> > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > >> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> > >> > -fno-strict-aliasing
> > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
prototypes
> > >> > > > > export MET_HDF=/software/depot/met-8.1/external_libs
> > >> > > > > export
> > >> > > > >
> > >> > > >
> > >> > >
> > >> >
> > >>
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > >> > > > > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> > >> > > > > export MET_NETCDF=/software/depot/met-8.1/external_libs
> > >> > > > > export
> MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > >> > > > > export MET_CAIROLIB=/software/depot/met-
8.1/external_libs/lib
> > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil
-lm
> > >> -Xlinker
> > >> > > > > -export-dynamic
> > >> > > > > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > >> > > > > export MET_BUFRLIB=/software/depot/met-
8.1/external_libs/lib
> > >> > > > > cd /software/depot/met-8.1/met-8.1
> > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > >> --enable-grib2
> > >> > > > > --enable-modis --enable-mode_graphics --enable-lidar2nc
>
> > >> > > configure.log
> > >> > > > > 2>&1
> > >> > > > > configure returned with non-zero (127) status
> > >> > > > >
> > >> > > > >
> > >> > > >
> > >> > > >
> > >> > > >
> > >> > >
> > >> > >
> > >> > >
> > >> > >
> > >> >
> > >> >
> > >> >
> > >> >
> > >>
> > >>
> > >>
> >
> >
> >
> >
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Mon May 13 17:38:33 2019
You can see I am using those libraries for MET 8.1:
[root at maury2 bin]# ldd modis_regrid
linux-vdso.so.1 => (0x00007ffd449a3000)
libpython2.7.so.1.0 => /software/depot/anaconda-
2.4.0/lib/libpython2.7.so.1.0 (0x00002ab75e1f3000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x00002ab75e63b000)
libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
libutil.so.1 => /lib64/libutil.so.1 (0x00002ab75ea5c000)
libpng16.so.16 => /software/depot/met-
8.1/external_libs/lib/libpng16.so.16 (0x00002ab75ec60000)
libz.so.1 => /software/depot/met-
8.1/external_libs/lib/libz.so.1 (0x00002ab75ee92000)
libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
libnetcdf_c++4.so.1 => /software/depot/met-
8.1/external_libs/lib/libnetcdf_c++4.so.1 (0x00002ab75f32f000)
libnetcdf.so.11 => /software/depot/met-
8.1/external_libs/lib/libnetcdf.so.11 (0x00002ab75f57c000)
libgsl.so.19 => /software/depot/met-
8.1/external_libs/lib/libgsl.so.19 (0x00002ab75f8bb000)
libgslcblas.so.0 => /software/depot/met-
8.1/external_libs/lib/libgslcblas.so.0 (0x00002ab75fcfe000)
libjpeg.so.9 => /software/depot/anaconda-
2.4.0/lib/libjpeg.so.9 (0x00002ab75ff37000)
libstdc++.so.6 => /software/depot/anaconda-
2.4.0/lib/libstdc++.so.6 (0x00002ab760189000)
libgcc_s.so.1 => /software/depot/anaconda-
2.4.0/lib/libgcc_s.so.1 (0x00002ab7602cb000)
libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
/lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
libhdf5_hl.so.10 => /software/depot/met-
8.1/external_libs/lib/libhdf5_hl.so.10 (0x00002ab760675000)
libhdf5.so.10 => /software/depot/met-
8.1/external_libs/lib/libhdf5.so.10 (0x00002ab760894000)
librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
[root at maury2 bin]#
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Monday, May 13, 2019 4:26 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Thank you, Greg. Can you please tell me - were the libraries and the
MET
code built with the same version of the compiler. I'm checking to see
if,
for example, the libraries were built with gcc-6.3.0 but the MET code
was
build with gcc-4.4.7.
It sounds like we need the libraries and the MET code to be built with
the
same version of the compiler, in this case.
Thanks for any information you can provide.
Julie
On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> Find the logs attached.
>
> Greg
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 13, 2019 2:15 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Could you please run the following:
>
> which pb2nc
> ldd <full path to pb2nc> | grep gfortran
>
> and send me the output?
>
> Please also send your config.log and make.log file.
>
> Thank you!
>
> Julie
>
> On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > I used the buildscript. It should build all of the external
libraries, so
> > I believe everything was built with the same compiler.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 2:07 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Hi Greg. Our developer suspects it may be a mismatched
compiler/library
> > version. Was BUFRLIB installed with the same compiler as MET?
Also,
> what
> > version of BURRLIB are you using?
> >
> > Thanks,
> > Julie
> >
> > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
<jpresto at ucar.edu>
> > wrote:
> >
> > > Hi Greg. I am checking in with another developer regarding the
error
> you
> > > experienced. Thank you for your patience.
> > >
> > > Julie
> > >
> > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory, Contractor,
Code
> > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > >
> > >>
> > >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >>
> > >> I was able to build on Red Hat using:
> > >>
> > >> [ramos at lorenz ~]$ gcc --version
> > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > >> This is free software; see the source for copying conditions.
There
> is
> > NO
> > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > >> PURPOSE.
> > >>
> > >> [ramos at lorenz ~]$
> > >>
> > >> Not all of the tests passed, please see attachment.
> > >>
> > >> Greg
> > >>
> > >> -----Original Message-----
> > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > >> Sent: Thursday, May 9, 2019 1:46 PM
> > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > >> Prestopnik
> > >>
> > >> Thank you for letting me know. I will proceed with trying to
> reproduce
> > >> the
> > >> problem using the gcc-6.3.0. I will follow up once I have more
> > >> information.
> > >>
> > >> Julie
> > >>
> > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1
> > >> via RT <met_help at ucar.edu> wrote:
> > >>
> > >> >
> > >> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > >> >
> > >> > When I compiled MET 8.0 the last time, it worked. I was also
able to
> > >> > compile 8.0 on out Cray:
> > >> >
> > >> > [root at maury ramos]# ssh ramos at leo1
> > >> > Password:
> > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > >> >
> > >> > *** Welcome to Cray eLogin Server ***
> > >> > Running 132MB Suse 12.3
> > >> > 16 vcores, boot_memtotal: 257916mb
> > >> >
> > >> > You are accessing a U.S. Government (USG) Information System
(IS)
> that
> > >> is
> > >> > provided for USG-authorized use only.
> > >> > By using this IS (which includes any device attached to this
IS),
> you
> > >> > consent to the following conditions:
> > >> > -The USG routinely intercepts and monitors communications on
this IS
> > for
> > >> > purposes including, but not limited to,
> > >> > penetration testing, COMSEC monitoring, network operations
and
> > defense,
> > >> > personnel misconduct (PM), law enforcement (LE),
> > >> > and counterintelligence (CI) investigations.
> > >> > -At any time, the USG may inspect and seize data stored on
this IS.
> > >> > -Communications using, or data stored on, this IS are not
private,
> are
> > >> > subject to routine monitoring, interception,
> > >> > and search, and may be disclosed or used for any USG-
authorized
> > purpose.
> > >> > -This IS includes security measures (e.g., authentication and
access
> > >> > controls) to protect USG interests -- not for
> > >> > your personal benefit or privacy.
> > >> > -Notwithstanding the above, using this IS does not constitute
> consent
> > to
> > >> > PM, LE or CI investigative searching or
> > >> > monitoring of the content of privileged communications, or
work
> > product,
> > >> > related to personal representation or
> > >> > services by attorneys, psychotherapists, or clergy, and their
> > >> assistants.
> > >> > Such communications and work product are
> > >> > private and confidential. See User Agreement for details.
> > >> >
> > >> > ramos at leo1:~> which gcc
> > >> > /opt/gcc/7.3.0/bin/gcc
> > >> > ramos at leo1:~>
> > >> >
> > >> > -----Original Message-----
> > >> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > >> > Prestopnik
> > >> >
> > >> > Hi Gregory. I have not tested with version 6.3.0 of the gcc
> compiler,
> > >> but
> > >> > rather only with lower versions (specifically 4.8.5). We
would, of
> > >> course,
> > >> > want our code to work with higher versions as well. I have
not yet
> > had
> > >> an
> > >> > opportunity to test with a higher version like 6.3.0. Do you
have
> the
> > >> > ability to compile MET using a lesser version of the gcc
compiler to
> > >> see if
> > >> > that clears up the issues you are experiencing?
> > >> >
> > >> > Julie
> > >> >
> > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
Contractor, Code
> > >> 7501.1
> > >> > via RT <met_help at ucar.edu> wrote:
> > >> >
> > >> > >
> > >> > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >> > >
> > >> > > Any updates or suggestions?
> > >> > >
> > >> > > Greg
> > >> > >
> > >> > > -----Original Message-----
> > >> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> Julie
> > >> > > Prestopnik
> > >> > >
> > >> > > Hi Greg. Thank you for passing along your config.log file.
I
> see a
> > >> > couple
> > >> > > of linker problems in there:
> > >> > >
> > >> > > /usr/bin/ld: cannot find -lfl
> > >> > >
> > >> > > /usr/bin/ld: cannot find -ll
> > >> > >
> > >> > > Based on those errors, it looks like you may not have flex
and
> bison
> > >> > > installed. Please install those and try running configure
again.
> > >> Please
> > >> > > let us know how it goes.
> > >> > >
> > >> > > Also, I just wanted to address one other thing. In your
original
> > >> email
> > >> > you
> > >> > > listed the following as part of your "MET Configuration
settings":
> > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil -lm
> -Xlinker
> > >> > > -export-dynamic
> > >> > >
> > >> > > However, in your config.log file it looks like
MET_PYTHON_LD was
> > >> actually
> > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib -lpython2.7
> > -lpthread
> > >> > -ldl
> > >> > > -lutil -lm -Xlinker -export-dynamic", which is correct
because you
> > >> need
> > >> > to
> > >> > > have that -L part in there, so I just want to ensure that
will
> stay
> > >> there
> > >> > > when you run configure again.
> > >> > >
> > >> > > Thanks,
> > >> > > Julie
> > >> > >
> > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
Contractor,
> Code
> > >> > 7501.1
> > >> > > via RT <met_help at ucar.edu> wrote:
> > >> > >
> > >> > > >
> > >> > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >> > > >
> > >> > > > Configure.log has no meaningful info:
> > >> > > >
> > >> > > > [ramos at predict met-8.1]$ more configure.log
> > >> > > > -bash: [ramos at predict: command not found
> > >> > > > [ramos at predict met-8.1]$
> > >> > > >
> > >> > > >
> > >> > > > -----Original Message-----
> > >> > > > From: John Halley Gotway via RT
[mailto:met_help at ucar.edu]
> > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > Julie
> > >> > > > Prestopnik
> > >> > > >
> > >> > > > Hi Greg,
> > >> > > >
> > >> > > > I'll go ahead and assign this ticket to Julie, and she
should be
> > >> > writing
> > >> > > > you back in the next couple of days.
> > >> > > >
> > >> > > > I do know she'll want to see both the "configure.log"
file you
> > >> > generated
> > >> > > as
> > >> > > > well as the "config.log" file from that same directory.
So
> please
> > >> send
> > >> > > > those along when you get a chance.
> > >> > > >
> > >> > > > Thanks,
> > >> > > > John
> > >> > > >
> > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
Contractor,
> > Code
> > >> > > 7501.1
> > >> > > > via RT <met_help at ucar.edu> wrote:
> > >> > > >
> > >> > > > >
> > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted upon.
> > >> > > > > Transaction: Ticket created by
Greg.Ramos.ctr at nrlmry.navy.mil
> > >> > > > > Queue: met_help
> > >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > >> > > > > Owner: Nobody
> > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > >> > > > > Status: new
> > >> > > > > Ticket <URL:
> > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > >> > > >
> > >> > > > >
> > >> > > > >
> > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
Anaconda
> 2.4.0.
> > >> The
> > >> > > user
> > >> > > > > asked for 8.1. I took notes last time, but running into
> > problems:
> > >> > > > >
> > >> > > > > MET Configuration settings...
> > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > >> > > > > export
> > >> > > > >
> > >> >
> > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > >> > > > > export
> > >> > MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > >> > > > > export MET_GSL=/software/depot/met-8.1/external_libs
> > >> > > > > export
> > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > >> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> > >> > -fno-strict-aliasing
> > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
prototypes
> > >> > > > > export MET_HDF=/software/depot/met-8.1/external_libs
> > >> > > > > export
> > >> > > > >
> > >> > > >
> > >> > >
> > >> >
> > >>
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > >> > > > > export MET_HDFEOS=/software/depot/met-8.1/external_libs
> > >> > > > > export MET_NETCDF=/software/depot/met-8.1/external_libs
> > >> > > > > export
> MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > >> > > > > export MET_CAIROLIB=/software/depot/met-
8.1/external_libs/lib
> > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil
-lm
> > >> -Xlinker
> > >> > > > > -export-dynamic
> > >> > > > > export MET_GRIB2C=/software/depot/met-8.1/external_libs
> > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > >> > > > > export MET_BUFRLIB=/software/depot/met-
8.1/external_libs/lib
> > >> > > > > cd /software/depot/met-8.1/met-8.1
> > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > >> --enable-grib2
> > >> > > > > --enable-modis --enable-mode_graphics --enable-lidar2nc
>
> > >> > > configure.log
> > >> > > > > 2>&1
> > >> > > > > configure returned with non-zero (127) status
> > >> > > > >
> > >> > > > >
> > >> > > >
> > >> > > >
> > >> > > >
> > >> > >
> > >> > >
> > >> > >
> > >> > >
> > >> >
> > >> >
> > >> >
> > >> >
> > >>
> > >>
> > >>
> >
> >
> >
> >
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Julie Prestopnik
Time: Mon May 13 17:38:49 2019
Looking back on our email history I only see timestamp listings for
the MET
8.1 executables and not for any libraries.
Julie
On Mon, May 13, 2019 at 5:34 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> I previously sent you the directory of the libraries and the MET
8.1 with
> the timestamps.
>
> Greg
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 13, 2019 4:26 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Thank you, Greg. Can you please tell me - were the libraries and
the MET
> code built with the same version of the compiler. I'm checking to
see if,
> for example, the libraries were built with gcc-6.3.0 but the MET
code was
> build with gcc-4.4.7.
>
> It sounds like we need the libraries and the MET code to be built
with the
> same version of the compiler, in this case.
>
> Thanks for any information you can provide.
>
> Julie
>
> On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > Find the logs attached.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 2:15 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Could you please run the following:
> >
> > which pb2nc
> > ldd <full path to pb2nc> | grep gfortran
> >
> > and send me the output?
> >
> > Please also send your config.log and make.log file.
> >
> > Thank you!
> >
> > Julie
> >
> > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory, Contractor,
Code
> 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >
> > > I used the buildscript. It should build all of the external
libraries,
> so
> > > I believe everything was built with the same compiler.
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 2:07 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Hi Greg. Our developer suspects it may be a mismatched
> compiler/library
> > > version. Was BUFRLIB installed with the same compiler as MET?
Also,
> > what
> > > version of BURRLIB are you using?
> > >
> > > Thanks,
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
<jpresto at ucar.edu>
> > > wrote:
> > >
> > > > Hi Greg. I am checking in with another developer regarding
the error
> > you
> > > > experienced. Thank you for your patience.
> > > >
> > > > Julie
> > > >
> > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
Contractor, Code
> > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > >
> > > >>
> > > >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >>
> > > >> I was able to build on Red Hat using:
> > > >>
> > > >> [ramos at lorenz ~]$ gcc --version
> > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > >> This is free software; see the source for copying conditions.
There
> > is
> > > NO
> > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > > >> PURPOSE.
> > > >>
> > > >> [ramos at lorenz ~]$
> > > >>
> > > >> Not all of the tests passed, please see attachment.
> > > >>
> > > >> Greg
> > > >>
> > > >> -----Original Message-----
> > > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > >> Prestopnik
> > > >>
> > > >> Thank you for letting me know. I will proceed with trying to
> > reproduce
> > > >> the
> > > >> problem using the gcc-6.3.0. I will follow up once I have
more
> > > >> information.
> > > >>
> > > >> Julie
> > > >>
> > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
Contractor, Code
> > > 7501.1
> > > >> via RT <met_help at ucar.edu> wrote:
> > > >>
> > > >> >
> > > >> > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > >> >
> > > >> > When I compiled MET 8.0 the last time, it worked. I was
also able
> to
> > > >> > compile 8.0 on out Cray:
> > > >> >
> > > >> > [root at maury ramos]# ssh ramos at leo1
> > > >> > Password:
> > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > >> >
> > > >> > *** Welcome to Cray eLogin Server ***
> > > >> > Running 132MB Suse 12.3
> > > >> > 16 vcores, boot_memtotal: 257916mb
> > > >> >
> > > >> > You are accessing a U.S. Government (USG) Information
System (IS)
> > that
> > > >> is
> > > >> > provided for USG-authorized use only.
> > > >> > By using this IS (which includes any device attached to
this IS),
> > you
> > > >> > consent to the following conditions:
> > > >> > -The USG routinely intercepts and monitors communications
on this
> IS
> > > for
> > > >> > purposes including, but not limited to,
> > > >> > penetration testing, COMSEC monitoring, network operations
and
> > > defense,
> > > >> > personnel misconduct (PM), law enforcement (LE),
> > > >> > and counterintelligence (CI) investigations.
> > > >> > -At any time, the USG may inspect and seize data stored on
this
> IS.
> > > >> > -Communications using, or data stored on, this IS are not
private,
> > are
> > > >> > subject to routine monitoring, interception,
> > > >> > and search, and may be disclosed or used for any USG-
authorized
> > > purpose.
> > > >> > -This IS includes security measures (e.g., authentication
and
> access
> > > >> > controls) to protect USG interests -- not for
> > > >> > your personal benefit or privacy.
> > > >> > -Notwithstanding the above, using this IS does not
constitute
> > consent
> > > to
> > > >> > PM, LE or CI investigative searching or
> > > >> > monitoring of the content of privileged communications, or
work
> > > product,
> > > >> > related to personal representation or
> > > >> > services by attorneys, psychotherapists, or clergy, and
their
> > > >> assistants.
> > > >> > Such communications and work product are
> > > >> > private and confidential. See User Agreement for details.
> > > >> >
> > > >> > ramos at leo1:~> which gcc
> > > >> > /opt/gcc/7.3.0/bin/gcc
> > > >> > ramos at leo1:~>
> > > >> >
> > > >> > -----Original Message-----
> > > >> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> Julie
> > > >> > Prestopnik
> > > >> >
> > > >> > Hi Gregory. I have not tested with version 6.3.0 of the
gcc
> > compiler,
> > > >> but
> > > >> > rather only with lower versions (specifically 4.8.5). We
would,
> of
> > > >> course,
> > > >> > want our code to work with higher versions as well. I have
not
> yet
> > > had
> > > >> an
> > > >> > opportunity to test with a higher version like 6.3.0. Do
you have
> > the
> > > >> > ability to compile MET using a lesser version of the gcc
compiler
> to
> > > >> see if
> > > >> > that clears up the issues you are experiencing?
> > > >> >
> > > >> > Julie
> > > >> >
> > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
Contractor,
> Code
> > > >> 7501.1
> > > >> > via RT <met_help at ucar.edu> wrote:
> > > >> >
> > > >> > >
> > > >> > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > >> > >
> > > >> > > Any updates or suggestions?
> > > >> > >
> > > >> > > Greg
> > > >> > >
> > > >> > > -----Original Message-----
> > > >> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > Julie
> > > >> > > Prestopnik
> > > >> > >
> > > >> > > Hi Greg. Thank you for passing along your config.log
file. I
> > see a
> > > >> > couple
> > > >> > > of linker problems in there:
> > > >> > >
> > > >> > > /usr/bin/ld: cannot find -lfl
> > > >> > >
> > > >> > > /usr/bin/ld: cannot find -ll
> > > >> > >
> > > >> > > Based on those errors, it looks like you may not have
flex and
> > bison
> > > >> > > installed. Please install those and try running
configure
> again.
> > > >> Please
> > > >> > > let us know how it goes.
> > > >> > >
> > > >> > > Also, I just wanted to address one other thing. In your
> original
> > > >> email
> > > >> > you
> > > >> > > listed the following as part of your "MET Configuration
> settings":
> > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil
-lm
> > -Xlinker
> > > >> > > -export-dynamic
> > > >> > >
> > > >> > > However, in your config.log file it looks like
MET_PYTHON_LD was
> > > >> actually
> > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
-lpython2.7
> > > -lpthread
> > > >> > -ldl
> > > >> > > -lutil -lm -Xlinker -export-dynamic", which is correct
because
> you
> > > >> need
> > > >> > to
> > > >> > > have that -L part in there, so I just want to ensure that
will
> > stay
> > > >> there
> > > >> > > when you run configure again.
> > > >> > >
> > > >> > > Thanks,
> > > >> > > Julie
> > > >> > >
> > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
Contractor,
> > Code
> > > >> > 7501.1
> > > >> > > via RT <met_help at ucar.edu> wrote:
> > > >> > >
> > > >> > > >
> > > >> > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> >
> > > >> > > >
> > > >> > > > Configure.log has no meaningful info:
> > > >> > > >
> > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > >> > > > -bash: [ramos at predict: command not found
> > > >> > > > [ramos at predict met-8.1]$
> > > >> > > >
> > > >> > > >
> > > >> > > > -----Original Message-----
> > > >> > > > From: John Halley Gotway via RT
[mailto:met_help at ucar.edu]
> > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET 8.1
> > > Julie
> > > >> > > > Prestopnik
> > > >> > > >
> > > >> > > > Hi Greg,
> > > >> > > >
> > > >> > > > I'll go ahead and assign this ticket to Julie, and she
should
> be
> > > >> > writing
> > > >> > > > you back in the next couple of days.
> > > >> > > >
> > > >> > > > I do know she'll want to see both the "configure.log"
file you
> > > >> > generated
> > > >> > > as
> > > >> > > > well as the "config.log" file from that same directory.
So
> > please
> > > >> send
> > > >> > > > those along when you get a chance.
> > > >> > > >
> > > >> > > > Thanks,
> > > >> > > > John
> > > >> > > >
> > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
Contractor,
> > > Code
> > > >> > > 7501.1
> > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > >> > > >
> > > >> > > > >
> > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted
upon.
> > > >> > > > > Transaction: Ticket created by
> Greg.Ramos.ctr at nrlmry.navy.mil
> > > >> > > > > Queue: met_help
> > > >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > >> > > > > Owner: Nobody
> > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > >> > > > > Status: new
> > > >> > > > > Ticket <URL:
> > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > >> > > >
> > > >> > > > >
> > > >> > > > >
> > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
Anaconda
> > 2.4.0.
> > > >> The
> > > >> > > user
> > > >> > > > > asked for 8.1. I took notes last time, but running
into
> > > problems:
> > > >> > > > >
> > > >> > > > > MET Configuration settings...
> > > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > >> > > > > export
> > > >> > > > >
> > > >> >
> > > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > > >> > > > > export
> > > >> > MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > > >> > > > > export MET_GSL=/software/depot/met-8.1/external_libs
> > > >> > > > > export
> > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > > >> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> > > >> > -fno-strict-aliasing
> > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
prototypes
> > > >> > > > > export MET_HDF=/software/depot/met-8.1/external_libs
> > > >> > > > > export
> > > >> > > > >
> > > >> > > >
> > > >> > >
> > > >> >
> > > >>
> > >
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > > >> > > > > export MET_HDFEOS=/software/depot/met-
8.1/external_libs
> > > >> > > > > export MET_NETCDF=/software/depot/met-
8.1/external_libs
> > > >> > > > > export
> > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > >> > > > > export
> MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil -lm
> > > >> -Xlinker
> > > >> > > > > -export-dynamic
> > > >> > > > > export MET_GRIB2C=/software/depot/met-
8.1/external_libs
> > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > >> > > > > export MET_BUFRLIB=/software/depot/met-
8.1/external_libs/lib
> > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > >> --enable-grib2
> > > >> > > > > --enable-modis --enable-mode_graphics --enable-
lidar2nc >
> > > >> > > configure.log
> > > >> > > > > 2>&1
> > > >> > > > > configure returned with non-zero (127) status
> > > >> > > > >
> > > >> > > > >
> > > >> > > >
> > > >> > > >
> > > >> > > >
> > > >> > >
> > > >> > >
> > > >> > >
> > > >> > >
> > > >> >
> > > >> >
> > > >> >
> > > >> >
> > > >>
> > > >>
> > > >>
> > >
> > >
> > >
> > >
> >
> >
> >
>
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Julie Prestopnik
Time: Mon May 13 17:43:42 2019
Thank you. Unfortunately, that does not tell me if the libraries and
the
MET code were built with the same version of the compiler. I also do
not
see bufrlib in that list.
Can you please tell me - were the libraries and the MET code built
with the
same version of the compiler? I'm checking to see if, for example,
the
libraries were built with gcc-6.3.0 but the MET code was build with
gcc-4.4.7.
Thanks!
Julie
On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> You can see I am using those libraries for MET 8.1:
>
> [root at maury2 bin]# ldd modis_regrid
> linux-vdso.so.1 => (0x00007ffd449a3000)
> libpython2.7.so.1.0 =>
> /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
(0x00002ab75e1f3000)
> libpthread.so.0 => /lib64/libpthread.so.0
(0x00002ab75e63b000)
> libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> libutil.so.1 => /lib64/libutil.so.1 (0x00002ab75ea5c000)
> libpng16.so.16 =>
> /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> (0x00002ab75ec60000)
> libz.so.1 => /software/depot/met-
8.1/external_libs/lib/libz.so.1
> (0x00002ab75ee92000)
> libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> libnetcdf_c++4.so.1 =>
> /software/depot/met-8.1/external_libs/lib/libnetcdf_c++4.so.1
> (0x00002ab75f32f000)
> libnetcdf.so.11 =>
> /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> (0x00002ab75f57c000)
> libgsl.so.19 =>
> /software/depot/met-8.1/external_libs/lib/libgsl.so.19
(0x00002ab75f8bb000)
> libgslcblas.so.0 =>
> /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> (0x00002ab75fcfe000)
> libjpeg.so.9 => /software/depot/anaconda-
2.4.0/lib/libjpeg.so.9
> (0x00002ab75ff37000)
> libstdc++.so.6 =>
> /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
(0x00002ab760189000)
> libgcc_s.so.1 => /software/depot/anaconda-
2.4.0/lib/libgcc_s.so.1
> (0x00002ab7602cb000)
> libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> libhdf5_hl.so.10 =>
> /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> (0x00002ab760675000)
> libhdf5.so.10 =>
> /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
(0x00002ab760894000)
> librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> [root at maury2 bin]#
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 13, 2019 4:26 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Thank you, Greg. Can you please tell me - were the libraries and
the MET
> code built with the same version of the compiler. I'm checking to
see if,
> for example, the libraries were built with gcc-6.3.0 but the MET
code was
> build with gcc-4.4.7.
>
> It sounds like we need the libraries and the MET code to be built
with the
> same version of the compiler, in this case.
>
> Thanks for any information you can provide.
>
> Julie
>
> On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > Find the logs attached.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 2:15 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Could you please run the following:
> >
> > which pb2nc
> > ldd <full path to pb2nc> | grep gfortran
> >
> > and send me the output?
> >
> > Please also send your config.log and make.log file.
> >
> > Thank you!
> >
> > Julie
> >
> > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory, Contractor,
Code
> 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >
> > > I used the buildscript. It should build all of the external
libraries,
> so
> > > I believe everything was built with the same compiler.
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 2:07 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Hi Greg. Our developer suspects it may be a mismatched
> compiler/library
> > > version. Was BUFRLIB installed with the same compiler as MET?
Also,
> > what
> > > version of BURRLIB are you using?
> > >
> > > Thanks,
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
<jpresto at ucar.edu>
> > > wrote:
> > >
> > > > Hi Greg. I am checking in with another developer regarding
the error
> > you
> > > > experienced. Thank you for your patience.
> > > >
> > > > Julie
> > > >
> > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
Contractor, Code
> > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > >
> > > >>
> > > >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >>
> > > >> I was able to build on Red Hat using:
> > > >>
> > > >> [ramos at lorenz ~]$ gcc --version
> > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > >> This is free software; see the source for copying conditions.
There
> > is
> > > NO
> > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > > >> PURPOSE.
> > > >>
> > > >> [ramos at lorenz ~]$
> > > >>
> > > >> Not all of the tests passed, please see attachment.
> > > >>
> > > >> Greg
> > > >>
> > > >> -----Original Message-----
> > > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > >> Prestopnik
> > > >>
> > > >> Thank you for letting me know. I will proceed with trying to
> > reproduce
> > > >> the
> > > >> problem using the gcc-6.3.0. I will follow up once I have
more
> > > >> information.
> > > >>
> > > >> Julie
> > > >>
> > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
Contractor, Code
> > > 7501.1
> > > >> via RT <met_help at ucar.edu> wrote:
> > > >>
> > > >> >
> > > >> > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > >> >
> > > >> > When I compiled MET 8.0 the last time, it worked. I was
also able
> to
> > > >> > compile 8.0 on out Cray:
> > > >> >
> > > >> > [root at maury ramos]# ssh ramos at leo1
> > > >> > Password:
> > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > >> >
> > > >> > *** Welcome to Cray eLogin Server ***
> > > >> > Running 132MB Suse 12.3
> > > >> > 16 vcores, boot_memtotal: 257916mb
> > > >> >
> > > >> > You are accessing a U.S. Government (USG) Information
System (IS)
> > that
> > > >> is
> > > >> > provided for USG-authorized use only.
> > > >> > By using this IS (which includes any device attached to
this IS),
> > you
> > > >> > consent to the following conditions:
> > > >> > -The USG routinely intercepts and monitors communications
on this
> IS
> > > for
> > > >> > purposes including, but not limited to,
> > > >> > penetration testing, COMSEC monitoring, network operations
and
> > > defense,
> > > >> > personnel misconduct (PM), law enforcement (LE),
> > > >> > and counterintelligence (CI) investigations.
> > > >> > -At any time, the USG may inspect and seize data stored on
this
> IS.
> > > >> > -Communications using, or data stored on, this IS are not
private,
> > are
> > > >> > subject to routine monitoring, interception,
> > > >> > and search, and may be disclosed or used for any USG-
authorized
> > > purpose.
> > > >> > -This IS includes security measures (e.g., authentication
and
> access
> > > >> > controls) to protect USG interests -- not for
> > > >> > your personal benefit or privacy.
> > > >> > -Notwithstanding the above, using this IS does not
constitute
> > consent
> > > to
> > > >> > PM, LE or CI investigative searching or
> > > >> > monitoring of the content of privileged communications, or
work
> > > product,
> > > >> > related to personal representation or
> > > >> > services by attorneys, psychotherapists, or clergy, and
their
> > > >> assistants.
> > > >> > Such communications and work product are
> > > >> > private and confidential. See User Agreement for details.
> > > >> >
> > > >> > ramos at leo1:~> which gcc
> > > >> > /opt/gcc/7.3.0/bin/gcc
> > > >> > ramos at leo1:~>
> > > >> >
> > > >> > -----Original Message-----
> > > >> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> Julie
> > > >> > Prestopnik
> > > >> >
> > > >> > Hi Gregory. I have not tested with version 6.3.0 of the
gcc
> > compiler,
> > > >> but
> > > >> > rather only with lower versions (specifically 4.8.5). We
would,
> of
> > > >> course,
> > > >> > want our code to work with higher versions as well. I have
not
> yet
> > > had
> > > >> an
> > > >> > opportunity to test with a higher version like 6.3.0. Do
you have
> > the
> > > >> > ability to compile MET using a lesser version of the gcc
compiler
> to
> > > >> see if
> > > >> > that clears up the issues you are experiencing?
> > > >> >
> > > >> > Julie
> > > >> >
> > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
Contractor,
> Code
> > > >> 7501.1
> > > >> > via RT <met_help at ucar.edu> wrote:
> > > >> >
> > > >> > >
> > > >> > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > >> > >
> > > >> > > Any updates or suggestions?
> > > >> > >
> > > >> > > Greg
> > > >> > >
> > > >> > > -----Original Message-----
> > > >> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > Julie
> > > >> > > Prestopnik
> > > >> > >
> > > >> > > Hi Greg. Thank you for passing along your config.log
file. I
> > see a
> > > >> > couple
> > > >> > > of linker problems in there:
> > > >> > >
> > > >> > > /usr/bin/ld: cannot find -lfl
> > > >> > >
> > > >> > > /usr/bin/ld: cannot find -ll
> > > >> > >
> > > >> > > Based on those errors, it looks like you may not have
flex and
> > bison
> > > >> > > installed. Please install those and try running
configure
> again.
> > > >> Please
> > > >> > > let us know how it goes.
> > > >> > >
> > > >> > > Also, I just wanted to address one other thing. In your
> original
> > > >> email
> > > >> > you
> > > >> > > listed the following as part of your "MET Configuration
> settings":
> > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil
-lm
> > -Xlinker
> > > >> > > -export-dynamic
> > > >> > >
> > > >> > > However, in your config.log file it looks like
MET_PYTHON_LD was
> > > >> actually
> > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
-lpython2.7
> > > -lpthread
> > > >> > -ldl
> > > >> > > -lutil -lm -Xlinker -export-dynamic", which is correct
because
> you
> > > >> need
> > > >> > to
> > > >> > > have that -L part in there, so I just want to ensure that
will
> > stay
> > > >> there
> > > >> > > when you run configure again.
> > > >> > >
> > > >> > > Thanks,
> > > >> > > Julie
> > > >> > >
> > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
Contractor,
> > Code
> > > >> > 7501.1
> > > >> > > via RT <met_help at ucar.edu> wrote:
> > > >> > >
> > > >> > > >
> > > >> > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> >
> > > >> > > >
> > > >> > > > Configure.log has no meaningful info:
> > > >> > > >
> > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > >> > > > -bash: [ramos at predict: command not found
> > > >> > > > [ramos at predict met-8.1]$
> > > >> > > >
> > > >> > > >
> > > >> > > > -----Original Message-----
> > > >> > > > From: John Halley Gotway via RT
[mailto:met_help at ucar.edu]
> > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET 8.1
> > > Julie
> > > >> > > > Prestopnik
> > > >> > > >
> > > >> > > > Hi Greg,
> > > >> > > >
> > > >> > > > I'll go ahead and assign this ticket to Julie, and she
should
> be
> > > >> > writing
> > > >> > > > you back in the next couple of days.
> > > >> > > >
> > > >> > > > I do know she'll want to see both the "configure.log"
file you
> > > >> > generated
> > > >> > > as
> > > >> > > > well as the "config.log" file from that same directory.
So
> > please
> > > >> send
> > > >> > > > those along when you get a chance.
> > > >> > > >
> > > >> > > > Thanks,
> > > >> > > > John
> > > >> > > >
> > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
Contractor,
> > > Code
> > > >> > > 7501.1
> > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > >> > > >
> > > >> > > > >
> > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted
upon.
> > > >> > > > > Transaction: Ticket created by
> Greg.Ramos.ctr at nrlmry.navy.mil
> > > >> > > > > Queue: met_help
> > > >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > >> > > > > Owner: Nobody
> > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > >> > > > > Status: new
> > > >> > > > > Ticket <URL:
> > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > >> > > >
> > > >> > > > >
> > > >> > > > >
> > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
Anaconda
> > 2.4.0.
> > > >> The
> > > >> > > user
> > > >> > > > > asked for 8.1. I took notes last time, but running
into
> > > problems:
> > > >> > > > >
> > > >> > > > > MET Configuration settings...
> > > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > >> > > > > export
> > > >> > > > >
> > > >> >
> > > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > > >> > > > > export
> > > >> > MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > > >> > > > > export MET_GSL=/software/depot/met-8.1/external_libs
> > > >> > > > > export
> > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > > >> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> > > >> > -fno-strict-aliasing
> > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
prototypes
> > > >> > > > > export MET_HDF=/software/depot/met-8.1/external_libs
> > > >> > > > > export
> > > >> > > > >
> > > >> > > >
> > > >> > >
> > > >> >
> > > >>
> > >
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > > >> > > > > export MET_HDFEOS=/software/depot/met-
8.1/external_libs
> > > >> > > > > export MET_NETCDF=/software/depot/met-
8.1/external_libs
> > > >> > > > > export
> > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > >> > > > > export
> MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil -lm
> > > >> -Xlinker
> > > >> > > > > -export-dynamic
> > > >> > > > > export MET_GRIB2C=/software/depot/met-
8.1/external_libs
> > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > >> > > > > export MET_BUFRLIB=/software/depot/met-
8.1/external_libs/lib
> > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > >> --enable-grib2
> > > >> > > > > --enable-modis --enable-mode_graphics --enable-
lidar2nc >
> > > >> > > configure.log
> > > >> > > > > 2>&1
> > > >> > > > > configure returned with non-zero (127) status
> > > >> > > > >
> > > >> > > > >
> > > >> > > >
> > > >> > > >
> > > >> > > >
> > > >> > >
> > > >> > >
> > > >> > >
> > > >> > >
> > > >> >
> > > >> >
> > > >> >
> > > >> >
> > > >>
> > > >>
> > > >>
> > >
> > >
> > >
> > >
> >
> >
> >
>
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Mon May 13 17:45:55 2019
I sent you the output of ldd of one of the binaries. IT clearly shows
I used the libraries in the 8.1 directory.
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Monday, May 13, 2019 4:44 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Thank you. Unfortunately, that does not tell me if the libraries and
the
MET code were built with the same version of the compiler. I also do
not
see bufrlib in that list.
Can you please tell me - were the libraries and the MET code built
with the
same version of the compiler? I'm checking to see if, for example,
the
libraries were built with gcc-6.3.0 but the MET code was build with
gcc-4.4.7.
Thanks!
Julie
On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> You can see I am using those libraries for MET 8.1:
>
> [root at maury2 bin]# ldd modis_regrid
> linux-vdso.so.1 => (0x00007ffd449a3000)
> libpython2.7.so.1.0 =>
> /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
(0x00002ab75e1f3000)
> libpthread.so.0 => /lib64/libpthread.so.0
(0x00002ab75e63b000)
> libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> libutil.so.1 => /lib64/libutil.so.1 (0x00002ab75ea5c000)
> libpng16.so.16 =>
> /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> (0x00002ab75ec60000)
> libz.so.1 => /software/depot/met-
8.1/external_libs/lib/libz.so.1
> (0x00002ab75ee92000)
> libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> libnetcdf_c++4.so.1 =>
> /software/depot/met-8.1/external_libs/lib/libnetcdf_c++4.so.1
> (0x00002ab75f32f000)
> libnetcdf.so.11 =>
> /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> (0x00002ab75f57c000)
> libgsl.so.19 =>
> /software/depot/met-8.1/external_libs/lib/libgsl.so.19
(0x00002ab75f8bb000)
> libgslcblas.so.0 =>
> /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> (0x00002ab75fcfe000)
> libjpeg.so.9 => /software/depot/anaconda-
2.4.0/lib/libjpeg.so.9
> (0x00002ab75ff37000)
> libstdc++.so.6 =>
> /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
(0x00002ab760189000)
> libgcc_s.so.1 => /software/depot/anaconda-
2.4.0/lib/libgcc_s.so.1
> (0x00002ab7602cb000)
> libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> libhdf5_hl.so.10 =>
> /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> (0x00002ab760675000)
> libhdf5.so.10 =>
> /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
(0x00002ab760894000)
> librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> [root at maury2 bin]#
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 13, 2019 4:26 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Thank you, Greg. Can you please tell me - were the libraries and
the MET
> code built with the same version of the compiler. I'm checking to
see if,
> for example, the libraries were built with gcc-6.3.0 but the MET
code was
> build with gcc-4.4.7.
>
> It sounds like we need the libraries and the MET code to be built
with the
> same version of the compiler, in this case.
>
> Thanks for any information you can provide.
>
> Julie
>
> On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > Find the logs attached.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 2:15 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Could you please run the following:
> >
> > which pb2nc
> > ldd <full path to pb2nc> | grep gfortran
> >
> > and send me the output?
> >
> > Please also send your config.log and make.log file.
> >
> > Thank you!
> >
> > Julie
> >
> > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory, Contractor,
Code
> 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >
> > > I used the buildscript. It should build all of the external
libraries,
> so
> > > I believe everything was built with the same compiler.
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 2:07 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Hi Greg. Our developer suspects it may be a mismatched
> compiler/library
> > > version. Was BUFRLIB installed with the same compiler as MET?
Also,
> > what
> > > version of BURRLIB are you using?
> > >
> > > Thanks,
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
<jpresto at ucar.edu>
> > > wrote:
> > >
> > > > Hi Greg. I am checking in with another developer regarding
the error
> > you
> > > > experienced. Thank you for your patience.
> > > >
> > > > Julie
> > > >
> > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
Contractor, Code
> > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > >
> > > >>
> > > >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >>
> > > >> I was able to build on Red Hat using:
> > > >>
> > > >> [ramos at lorenz ~]$ gcc --version
> > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > >> This is free software; see the source for copying conditions.
There
> > is
> > > NO
> > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > > >> PURPOSE.
> > > >>
> > > >> [ramos at lorenz ~]$
> > > >>
> > > >> Not all of the tests passed, please see attachment.
> > > >>
> > > >> Greg
> > > >>
> > > >> -----Original Message-----
> > > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > >> Prestopnik
> > > >>
> > > >> Thank you for letting me know. I will proceed with trying to
> > reproduce
> > > >> the
> > > >> problem using the gcc-6.3.0. I will follow up once I have
more
> > > >> information.
> > > >>
> > > >> Julie
> > > >>
> > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
Contractor, Code
> > > 7501.1
> > > >> via RT <met_help at ucar.edu> wrote:
> > > >>
> > > >> >
> > > >> > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > >> >
> > > >> > When I compiled MET 8.0 the last time, it worked. I was
also able
> to
> > > >> > compile 8.0 on out Cray:
> > > >> >
> > > >> > [root at maury ramos]# ssh ramos at leo1
> > > >> > Password:
> > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > >> >
> > > >> > *** Welcome to Cray eLogin Server ***
> > > >> > Running 132MB Suse 12.3
> > > >> > 16 vcores, boot_memtotal: 257916mb
> > > >> >
> > > >> > You are accessing a U.S. Government (USG) Information
System (IS)
> > that
> > > >> is
> > > >> > provided for USG-authorized use only.
> > > >> > By using this IS (which includes any device attached to
this IS),
> > you
> > > >> > consent to the following conditions:
> > > >> > -The USG routinely intercepts and monitors communications
on this
> IS
> > > for
> > > >> > purposes including, but not limited to,
> > > >> > penetration testing, COMSEC monitoring, network operations
and
> > > defense,
> > > >> > personnel misconduct (PM), law enforcement (LE),
> > > >> > and counterintelligence (CI) investigations.
> > > >> > -At any time, the USG may inspect and seize data stored on
this
> IS.
> > > >> > -Communications using, or data stored on, this IS are not
private,
> > are
> > > >> > subject to routine monitoring, interception,
> > > >> > and search, and may be disclosed or used for any USG-
authorized
> > > purpose.
> > > >> > -This IS includes security measures (e.g., authentication
and
> access
> > > >> > controls) to protect USG interests -- not for
> > > >> > your personal benefit or privacy.
> > > >> > -Notwithstanding the above, using this IS does not
constitute
> > consent
> > > to
> > > >> > PM, LE or CI investigative searching or
> > > >> > monitoring of the content of privileged communications, or
work
> > > product,
> > > >> > related to personal representation or
> > > >> > services by attorneys, psychotherapists, or clergy, and
their
> > > >> assistants.
> > > >> > Such communications and work product are
> > > >> > private and confidential. See User Agreement for details.
> > > >> >
> > > >> > ramos at leo1:~> which gcc
> > > >> > /opt/gcc/7.3.0/bin/gcc
> > > >> > ramos at leo1:~>
> > > >> >
> > > >> > -----Original Message-----
> > > >> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> Julie
> > > >> > Prestopnik
> > > >> >
> > > >> > Hi Gregory. I have not tested with version 6.3.0 of the
gcc
> > compiler,
> > > >> but
> > > >> > rather only with lower versions (specifically 4.8.5). We
would,
> of
> > > >> course,
> > > >> > want our code to work with higher versions as well. I have
not
> yet
> > > had
> > > >> an
> > > >> > opportunity to test with a higher version like 6.3.0. Do
you have
> > the
> > > >> > ability to compile MET using a lesser version of the gcc
compiler
> to
> > > >> see if
> > > >> > that clears up the issues you are experiencing?
> > > >> >
> > > >> > Julie
> > > >> >
> > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
Contractor,
> Code
> > > >> 7501.1
> > > >> > via RT <met_help at ucar.edu> wrote:
> > > >> >
> > > >> > >
> > > >> > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > >> > >
> > > >> > > Any updates or suggestions?
> > > >> > >
> > > >> > > Greg
> > > >> > >
> > > >> > > -----Original Message-----
> > > >> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > Julie
> > > >> > > Prestopnik
> > > >> > >
> > > >> > > Hi Greg. Thank you for passing along your config.log
file. I
> > see a
> > > >> > couple
> > > >> > > of linker problems in there:
> > > >> > >
> > > >> > > /usr/bin/ld: cannot find -lfl
> > > >> > >
> > > >> > > /usr/bin/ld: cannot find -ll
> > > >> > >
> > > >> > > Based on those errors, it looks like you may not have
flex and
> > bison
> > > >> > > installed. Please install those and try running
configure
> again.
> > > >> Please
> > > >> > > let us know how it goes.
> > > >> > >
> > > >> > > Also, I just wanted to address one other thing. In your
> original
> > > >> email
> > > >> > you
> > > >> > > listed the following as part of your "MET Configuration
> settings":
> > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil
-lm
> > -Xlinker
> > > >> > > -export-dynamic
> > > >> > >
> > > >> > > However, in your config.log file it looks like
MET_PYTHON_LD was
> > > >> actually
> > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
-lpython2.7
> > > -lpthread
> > > >> > -ldl
> > > >> > > -lutil -lm -Xlinker -export-dynamic", which is correct
because
> you
> > > >> need
> > > >> > to
> > > >> > > have that -L part in there, so I just want to ensure that
will
> > stay
> > > >> there
> > > >> > > when you run configure again.
> > > >> > >
> > > >> > > Thanks,
> > > >> > > Julie
> > > >> > >
> > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
Contractor,
> > Code
> > > >> > 7501.1
> > > >> > > via RT <met_help at ucar.edu> wrote:
> > > >> > >
> > > >> > > >
> > > >> > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> >
> > > >> > > >
> > > >> > > > Configure.log has no meaningful info:
> > > >> > > >
> > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > >> > > > -bash: [ramos at predict: command not found
> > > >> > > > [ramos at predict met-8.1]$
> > > >> > > >
> > > >> > > >
> > > >> > > > -----Original Message-----
> > > >> > > > From: John Halley Gotway via RT
[mailto:met_help at ucar.edu]
> > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET 8.1
> > > Julie
> > > >> > > > Prestopnik
> > > >> > > >
> > > >> > > > Hi Greg,
> > > >> > > >
> > > >> > > > I'll go ahead and assign this ticket to Julie, and she
should
> be
> > > >> > writing
> > > >> > > > you back in the next couple of days.
> > > >> > > >
> > > >> > > > I do know she'll want to see both the "configure.log"
file you
> > > >> > generated
> > > >> > > as
> > > >> > > > well as the "config.log" file from that same directory.
So
> > please
> > > >> send
> > > >> > > > those along when you get a chance.
> > > >> > > >
> > > >> > > > Thanks,
> > > >> > > > John
> > > >> > > >
> > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
Contractor,
> > > Code
> > > >> > > 7501.1
> > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > >> > > >
> > > >> > > > >
> > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted
upon.
> > > >> > > > > Transaction: Ticket created by
> Greg.Ramos.ctr at nrlmry.navy.mil
> > > >> > > > > Queue: met_help
> > > >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > >> > > > > Owner: Nobody
> > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > >> > > > > Status: new
> > > >> > > > > Ticket <URL:
> > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > >> > > >
> > > >> > > > >
> > > >> > > > >
> > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
Anaconda
> > 2.4.0.
> > > >> The
> > > >> > > user
> > > >> > > > > asked for 8.1. I took notes last time, but running
into
> > > problems:
> > > >> > > > >
> > > >> > > > > MET Configuration settings...
> > > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > >> > > > > export
> > > >> > > > >
> > > >> >
> > > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > > >> > > > > export
> > > >> > MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > > >> > > > > export MET_GSL=/software/depot/met-8.1/external_libs
> > > >> > > > > export
> > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > > >> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> > > >> > -fno-strict-aliasing
> > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
prototypes
> > > >> > > > > export MET_HDF=/software/depot/met-8.1/external_libs
> > > >> > > > > export
> > > >> > > > >
> > > >> > > >
> > > >> > >
> > > >> >
> > > >>
> > >
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > > >> > > > > export MET_HDFEOS=/software/depot/met-
8.1/external_libs
> > > >> > > > > export MET_NETCDF=/software/depot/met-
8.1/external_libs
> > > >> > > > > export
> > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > >> > > > > export
> MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil -lm
> > > >> -Xlinker
> > > >> > > > > -export-dynamic
> > > >> > > > > export MET_GRIB2C=/software/depot/met-
8.1/external_libs
> > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > >> > > > > export MET_BUFRLIB=/software/depot/met-
8.1/external_libs/lib
> > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > >> --enable-grib2
> > > >> > > > > --enable-modis --enable-mode_graphics --enable-
lidar2nc >
> > > >> > > configure.log
> > > >> > > > > 2>&1
> > > >> > > > > configure returned with non-zero (127) status
> > > >> > > > >
> > > >> > > > >
> > > >> > > >
> > > >> > > >
> > > >> > > >
> > > >> > >
> > > >> > >
> > > >> > >
> > > >> > >
> > > >> >
> > > >> >
> > > >> >
> > > >> >
> > > >>
> > > >>
> > > >>
> > >
> > >
> > >
> > >
> >
> >
> >
>
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Mon May 13 17:48:24 2019
These are the exports I used, doesn't the make or config log show the
libraries I used?
[ramos at lorenz met]$ more exports
export TEST_BASE=/software/depot/met-8.1
export COMPILER=gnu
export MET_SUBDIR=/software/depot/met-8.1/met-8.1
export MET_TARBALL=/software/depot/met-8.1/tar_files.tar
export PATH=/software/depot/met-8.1/external_libs/bin:$PATH
export LD_LIBRARY_PATH=/software/depot/met-
8.1/external_libs/lib:$LD_LIBRARY_PATH
export PKG_CONFIG_PATH=/software/depot/met-
8.1/external_libs/lib/pkgconfig
export MET_PYTHON_CC=`/software/depot/anaconda-2.4.0/bin/python-config
--cflags`
export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
-lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-dynamic
export LD_LIBRARY_PATH=/software/depot/anaconda-
2.4.0/lib:${LD_LIBRARY_PATH}
export PYTHON_MODULE_USE=/software/Modules/modulefiles
export LD_LIBRARY_PATH=/software/depot/anaconda-
2.4.0/lib:$LD_LIBRARY_PATH
[ramos at lorenz met]$
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Monday, May 13, 2019 4:44 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Thank you. Unfortunately, that does not tell me if the libraries and
the
MET code were built with the same version of the compiler. I also do
not
see bufrlib in that list.
Can you please tell me - were the libraries and the MET code built
with the
same version of the compiler? I'm checking to see if, for example,
the
libraries were built with gcc-6.3.0 but the MET code was build with
gcc-4.4.7.
Thanks!
Julie
On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> You can see I am using those libraries for MET 8.1:
>
> [root at maury2 bin]# ldd modis_regrid
> linux-vdso.so.1 => (0x00007ffd449a3000)
> libpython2.7.so.1.0 =>
> /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
(0x00002ab75e1f3000)
> libpthread.so.0 => /lib64/libpthread.so.0
(0x00002ab75e63b000)
> libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> libutil.so.1 => /lib64/libutil.so.1 (0x00002ab75ea5c000)
> libpng16.so.16 =>
> /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> (0x00002ab75ec60000)
> libz.so.1 => /software/depot/met-
8.1/external_libs/lib/libz.so.1
> (0x00002ab75ee92000)
> libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> libnetcdf_c++4.so.1 =>
> /software/depot/met-8.1/external_libs/lib/libnetcdf_c++4.so.1
> (0x00002ab75f32f000)
> libnetcdf.so.11 =>
> /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> (0x00002ab75f57c000)
> libgsl.so.19 =>
> /software/depot/met-8.1/external_libs/lib/libgsl.so.19
(0x00002ab75f8bb000)
> libgslcblas.so.0 =>
> /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> (0x00002ab75fcfe000)
> libjpeg.so.9 => /software/depot/anaconda-
2.4.0/lib/libjpeg.so.9
> (0x00002ab75ff37000)
> libstdc++.so.6 =>
> /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
(0x00002ab760189000)
> libgcc_s.so.1 => /software/depot/anaconda-
2.4.0/lib/libgcc_s.so.1
> (0x00002ab7602cb000)
> libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> libhdf5_hl.so.10 =>
> /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> (0x00002ab760675000)
> libhdf5.so.10 =>
> /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
(0x00002ab760894000)
> librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> [root at maury2 bin]#
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 13, 2019 4:26 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Thank you, Greg. Can you please tell me - were the libraries and
the MET
> code built with the same version of the compiler. I'm checking to
see if,
> for example, the libraries were built with gcc-6.3.0 but the MET
code was
> build with gcc-4.4.7.
>
> It sounds like we need the libraries and the MET code to be built
with the
> same version of the compiler, in this case.
>
> Thanks for any information you can provide.
>
> Julie
>
> On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > Find the logs attached.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 2:15 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Could you please run the following:
> >
> > which pb2nc
> > ldd <full path to pb2nc> | grep gfortran
> >
> > and send me the output?
> >
> > Please also send your config.log and make.log file.
> >
> > Thank you!
> >
> > Julie
> >
> > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory, Contractor,
Code
> 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >
> > > I used the buildscript. It should build all of the external
libraries,
> so
> > > I believe everything was built with the same compiler.
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 2:07 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Hi Greg. Our developer suspects it may be a mismatched
> compiler/library
> > > version. Was BUFRLIB installed with the same compiler as MET?
Also,
> > what
> > > version of BURRLIB are you using?
> > >
> > > Thanks,
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
<jpresto at ucar.edu>
> > > wrote:
> > >
> > > > Hi Greg. I am checking in with another developer regarding
the error
> > you
> > > > experienced. Thank you for your patience.
> > > >
> > > > Julie
> > > >
> > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
Contractor, Code
> > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > >
> > > >>
> > > >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >>
> > > >> I was able to build on Red Hat using:
> > > >>
> > > >> [ramos at lorenz ~]$ gcc --version
> > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > >> This is free software; see the source for copying conditions.
There
> > is
> > > NO
> > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > > >> PURPOSE.
> > > >>
> > > >> [ramos at lorenz ~]$
> > > >>
> > > >> Not all of the tests passed, please see attachment.
> > > >>
> > > >> Greg
> > > >>
> > > >> -----Original Message-----
> > > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > >> Prestopnik
> > > >>
> > > >> Thank you for letting me know. I will proceed with trying to
> > reproduce
> > > >> the
> > > >> problem using the gcc-6.3.0. I will follow up once I have
more
> > > >> information.
> > > >>
> > > >> Julie
> > > >>
> > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
Contractor, Code
> > > 7501.1
> > > >> via RT <met_help at ucar.edu> wrote:
> > > >>
> > > >> >
> > > >> > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > >> >
> > > >> > When I compiled MET 8.0 the last time, it worked. I was
also able
> to
> > > >> > compile 8.0 on out Cray:
> > > >> >
> > > >> > [root at maury ramos]# ssh ramos at leo1
> > > >> > Password:
> > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > >> >
> > > >> > *** Welcome to Cray eLogin Server ***
> > > >> > Running 132MB Suse 12.3
> > > >> > 16 vcores, boot_memtotal: 257916mb
> > > >> >
> > > >> > You are accessing a U.S. Government (USG) Information
System (IS)
> > that
> > > >> is
> > > >> > provided for USG-authorized use only.
> > > >> > By using this IS (which includes any device attached to
this IS),
> > you
> > > >> > consent to the following conditions:
> > > >> > -The USG routinely intercepts and monitors communications
on this
> IS
> > > for
> > > >> > purposes including, but not limited to,
> > > >> > penetration testing, COMSEC monitoring, network operations
and
> > > defense,
> > > >> > personnel misconduct (PM), law enforcement (LE),
> > > >> > and counterintelligence (CI) investigations.
> > > >> > -At any time, the USG may inspect and seize data stored on
this
> IS.
> > > >> > -Communications using, or data stored on, this IS are not
private,
> > are
> > > >> > subject to routine monitoring, interception,
> > > >> > and search, and may be disclosed or used for any USG-
authorized
> > > purpose.
> > > >> > -This IS includes security measures (e.g., authentication
and
> access
> > > >> > controls) to protect USG interests -- not for
> > > >> > your personal benefit or privacy.
> > > >> > -Notwithstanding the above, using this IS does not
constitute
> > consent
> > > to
> > > >> > PM, LE or CI investigative searching or
> > > >> > monitoring of the content of privileged communications, or
work
> > > product,
> > > >> > related to personal representation or
> > > >> > services by attorneys, psychotherapists, or clergy, and
their
> > > >> assistants.
> > > >> > Such communications and work product are
> > > >> > private and confidential. See User Agreement for details.
> > > >> >
> > > >> > ramos at leo1:~> which gcc
> > > >> > /opt/gcc/7.3.0/bin/gcc
> > > >> > ramos at leo1:~>
> > > >> >
> > > >> > -----Original Message-----
> > > >> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> Julie
> > > >> > Prestopnik
> > > >> >
> > > >> > Hi Gregory. I have not tested with version 6.3.0 of the
gcc
> > compiler,
> > > >> but
> > > >> > rather only with lower versions (specifically 4.8.5). We
would,
> of
> > > >> course,
> > > >> > want our code to work with higher versions as well. I have
not
> yet
> > > had
> > > >> an
> > > >> > opportunity to test with a higher version like 6.3.0. Do
you have
> > the
> > > >> > ability to compile MET using a lesser version of the gcc
compiler
> to
> > > >> see if
> > > >> > that clears up the issues you are experiencing?
> > > >> >
> > > >> > Julie
> > > >> >
> > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
Contractor,
> Code
> > > >> 7501.1
> > > >> > via RT <met_help at ucar.edu> wrote:
> > > >> >
> > > >> > >
> > > >> > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > >> > >
> > > >> > > Any updates or suggestions?
> > > >> > >
> > > >> > > Greg
> > > >> > >
> > > >> > > -----Original Message-----
> > > >> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > Julie
> > > >> > > Prestopnik
> > > >> > >
> > > >> > > Hi Greg. Thank you for passing along your config.log
file. I
> > see a
> > > >> > couple
> > > >> > > of linker problems in there:
> > > >> > >
> > > >> > > /usr/bin/ld: cannot find -lfl
> > > >> > >
> > > >> > > /usr/bin/ld: cannot find -ll
> > > >> > >
> > > >> > > Based on those errors, it looks like you may not have
flex and
> > bison
> > > >> > > installed. Please install those and try running
configure
> again.
> > > >> Please
> > > >> > > let us know how it goes.
> > > >> > >
> > > >> > > Also, I just wanted to address one other thing. In your
> original
> > > >> email
> > > >> > you
> > > >> > > listed the following as part of your "MET Configuration
> settings":
> > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil
-lm
> > -Xlinker
> > > >> > > -export-dynamic
> > > >> > >
> > > >> > > However, in your config.log file it looks like
MET_PYTHON_LD was
> > > >> actually
> > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
-lpython2.7
> > > -lpthread
> > > >> > -ldl
> > > >> > > -lutil -lm -Xlinker -export-dynamic", which is correct
because
> you
> > > >> need
> > > >> > to
> > > >> > > have that -L part in there, so I just want to ensure that
will
> > stay
> > > >> there
> > > >> > > when you run configure again.
> > > >> > >
> > > >> > > Thanks,
> > > >> > > Julie
> > > >> > >
> > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
Contractor,
> > Code
> > > >> > 7501.1
> > > >> > > via RT <met_help at ucar.edu> wrote:
> > > >> > >
> > > >> > > >
> > > >> > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> >
> > > >> > > >
> > > >> > > > Configure.log has no meaningful info:
> > > >> > > >
> > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > >> > > > -bash: [ramos at predict: command not found
> > > >> > > > [ramos at predict met-8.1]$
> > > >> > > >
> > > >> > > >
> > > >> > > > -----Original Message-----
> > > >> > > > From: John Halley Gotway via RT
[mailto:met_help at ucar.edu]
> > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET 8.1
> > > Julie
> > > >> > > > Prestopnik
> > > >> > > >
> > > >> > > > Hi Greg,
> > > >> > > >
> > > >> > > > I'll go ahead and assign this ticket to Julie, and she
should
> be
> > > >> > writing
> > > >> > > > you back in the next couple of days.
> > > >> > > >
> > > >> > > > I do know she'll want to see both the "configure.log"
file you
> > > >> > generated
> > > >> > > as
> > > >> > > > well as the "config.log" file from that same directory.
So
> > please
> > > >> send
> > > >> > > > those along when you get a chance.
> > > >> > > >
> > > >> > > > Thanks,
> > > >> > > > John
> > > >> > > >
> > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
Contractor,
> > > Code
> > > >> > > 7501.1
> > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > >> > > >
> > > >> > > > >
> > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted
upon.
> > > >> > > > > Transaction: Ticket created by
> Greg.Ramos.ctr at nrlmry.navy.mil
> > > >> > > > > Queue: met_help
> > > >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > >> > > > > Owner: Nobody
> > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > >> > > > > Status: new
> > > >> > > > > Ticket <URL:
> > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > >> > > >
> > > >> > > > >
> > > >> > > > >
> > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
Anaconda
> > 2.4.0.
> > > >> The
> > > >> > > user
> > > >> > > > > asked for 8.1. I took notes last time, but running
into
> > > problems:
> > > >> > > > >
> > > >> > > > > MET Configuration settings...
> > > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > >> > > > > export
> > > >> > > > >
> > > >> >
> > > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > > >> > > > > export
> > > >> > MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > > >> > > > > export MET_GSL=/software/depot/met-8.1/external_libs
> > > >> > > > > export
> > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > > >> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> > > >> > -fno-strict-aliasing
> > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
prototypes
> > > >> > > > > export MET_HDF=/software/depot/met-8.1/external_libs
> > > >> > > > > export
> > > >> > > > >
> > > >> > > >
> > > >> > >
> > > >> >
> > > >>
> > >
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > > >> > > > > export MET_HDFEOS=/software/depot/met-
8.1/external_libs
> > > >> > > > > export MET_NETCDF=/software/depot/met-
8.1/external_libs
> > > >> > > > > export
> > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > >> > > > > export
> MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil -lm
> > > >> -Xlinker
> > > >> > > > > -export-dynamic
> > > >> > > > > export MET_GRIB2C=/software/depot/met-
8.1/external_libs
> > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > >> > > > > export MET_BUFRLIB=/software/depot/met-
8.1/external_libs/lib
> > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > >> --enable-grib2
> > > >> > > > > --enable-modis --enable-mode_graphics --enable-
lidar2nc >
> > > >> > > configure.log
> > > >> > > > > 2>&1
> > > >> > > > > configure returned with non-zero (127) status
> > > >> > > > >
> > > >> > > > >
> > > >> > > >
> > > >> > > >
> > > >> > > >
> > > >> > >
> > > >> > >
> > > >> > >
> > > >> > >
> > > >> >
> > > >> >
> > > >> >
> > > >> >
> > > >>
> > > >>
> > > >>
> > >
> > >
> > >
> > >
> >
> >
> >
>
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Mon May 13 17:51:09 2019
I just checked the config.log file and it show gcc is /usr/bin/gcc
[ramos at lorenz met-8.1]$ gcc --version
gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There
is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE.
[ramos at lorenz met-8.1]$
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Monday, May 13, 2019 4:44 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Thank you. Unfortunately, that does not tell me if the libraries and
the
MET code were built with the same version of the compiler. I also do
not
see bufrlib in that list.
Can you please tell me - were the libraries and the MET code built
with the
same version of the compiler? I'm checking to see if, for example,
the
libraries were built with gcc-6.3.0 but the MET code was build with
gcc-4.4.7.
Thanks!
Julie
On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> You can see I am using those libraries for MET 8.1:
>
> [root at maury2 bin]# ldd modis_regrid
> linux-vdso.so.1 => (0x00007ffd449a3000)
> libpython2.7.so.1.0 =>
> /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
(0x00002ab75e1f3000)
> libpthread.so.0 => /lib64/libpthread.so.0
(0x00002ab75e63b000)
> libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> libutil.so.1 => /lib64/libutil.so.1 (0x00002ab75ea5c000)
> libpng16.so.16 =>
> /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> (0x00002ab75ec60000)
> libz.so.1 => /software/depot/met-
8.1/external_libs/lib/libz.so.1
> (0x00002ab75ee92000)
> libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> libnetcdf_c++4.so.1 =>
> /software/depot/met-8.1/external_libs/lib/libnetcdf_c++4.so.1
> (0x00002ab75f32f000)
> libnetcdf.so.11 =>
> /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> (0x00002ab75f57c000)
> libgsl.so.19 =>
> /software/depot/met-8.1/external_libs/lib/libgsl.so.19
(0x00002ab75f8bb000)
> libgslcblas.so.0 =>
> /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> (0x00002ab75fcfe000)
> libjpeg.so.9 => /software/depot/anaconda-
2.4.0/lib/libjpeg.so.9
> (0x00002ab75ff37000)
> libstdc++.so.6 =>
> /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
(0x00002ab760189000)
> libgcc_s.so.1 => /software/depot/anaconda-
2.4.0/lib/libgcc_s.so.1
> (0x00002ab7602cb000)
> libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> libhdf5_hl.so.10 =>
> /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> (0x00002ab760675000)
> libhdf5.so.10 =>
> /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
(0x00002ab760894000)
> librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> [root at maury2 bin]#
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 13, 2019 4:26 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Thank you, Greg. Can you please tell me - were the libraries and
the MET
> code built with the same version of the compiler. I'm checking to
see if,
> for example, the libraries were built with gcc-6.3.0 but the MET
code was
> build with gcc-4.4.7.
>
> It sounds like we need the libraries and the MET code to be built
with the
> same version of the compiler, in this case.
>
> Thanks for any information you can provide.
>
> Julie
>
> On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > Find the logs attached.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 2:15 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Could you please run the following:
> >
> > which pb2nc
> > ldd <full path to pb2nc> | grep gfortran
> >
> > and send me the output?
> >
> > Please also send your config.log and make.log file.
> >
> > Thank you!
> >
> > Julie
> >
> > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory, Contractor,
Code
> 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >
> > > I used the buildscript. It should build all of the external
libraries,
> so
> > > I believe everything was built with the same compiler.
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 2:07 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Hi Greg. Our developer suspects it may be a mismatched
> compiler/library
> > > version. Was BUFRLIB installed with the same compiler as MET?
Also,
> > what
> > > version of BURRLIB are you using?
> > >
> > > Thanks,
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
<jpresto at ucar.edu>
> > > wrote:
> > >
> > > > Hi Greg. I am checking in with another developer regarding
the error
> > you
> > > > experienced. Thank you for your patience.
> > > >
> > > > Julie
> > > >
> > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
Contractor, Code
> > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > >
> > > >>
> > > >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >>
> > > >> I was able to build on Red Hat using:
> > > >>
> > > >> [ramos at lorenz ~]$ gcc --version
> > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > >> This is free software; see the source for copying conditions.
There
> > is
> > > NO
> > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > > >> PURPOSE.
> > > >>
> > > >> [ramos at lorenz ~]$
> > > >>
> > > >> Not all of the tests passed, please see attachment.
> > > >>
> > > >> Greg
> > > >>
> > > >> -----Original Message-----
> > > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > >> Prestopnik
> > > >>
> > > >> Thank you for letting me know. I will proceed with trying to
> > reproduce
> > > >> the
> > > >> problem using the gcc-6.3.0. I will follow up once I have
more
> > > >> information.
> > > >>
> > > >> Julie
> > > >>
> > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
Contractor, Code
> > > 7501.1
> > > >> via RT <met_help at ucar.edu> wrote:
> > > >>
> > > >> >
> > > >> > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > >> >
> > > >> > When I compiled MET 8.0 the last time, it worked. I was
also able
> to
> > > >> > compile 8.0 on out Cray:
> > > >> >
> > > >> > [root at maury ramos]# ssh ramos at leo1
> > > >> > Password:
> > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > >> >
> > > >> > *** Welcome to Cray eLogin Server ***
> > > >> > Running 132MB Suse 12.3
> > > >> > 16 vcores, boot_memtotal: 257916mb
> > > >> >
> > > >> > You are accessing a U.S. Government (USG) Information
System (IS)
> > that
> > > >> is
> > > >> > provided for USG-authorized use only.
> > > >> > By using this IS (which includes any device attached to
this IS),
> > you
> > > >> > consent to the following conditions:
> > > >> > -The USG routinely intercepts and monitors communications
on this
> IS
> > > for
> > > >> > purposes including, but not limited to,
> > > >> > penetration testing, COMSEC monitoring, network operations
and
> > > defense,
> > > >> > personnel misconduct (PM), law enforcement (LE),
> > > >> > and counterintelligence (CI) investigations.
> > > >> > -At any time, the USG may inspect and seize data stored on
this
> IS.
> > > >> > -Communications using, or data stored on, this IS are not
private,
> > are
> > > >> > subject to routine monitoring, interception,
> > > >> > and search, and may be disclosed or used for any USG-
authorized
> > > purpose.
> > > >> > -This IS includes security measures (e.g., authentication
and
> access
> > > >> > controls) to protect USG interests -- not for
> > > >> > your personal benefit or privacy.
> > > >> > -Notwithstanding the above, using this IS does not
constitute
> > consent
> > > to
> > > >> > PM, LE or CI investigative searching or
> > > >> > monitoring of the content of privileged communications, or
work
> > > product,
> > > >> > related to personal representation or
> > > >> > services by attorneys, psychotherapists, or clergy, and
their
> > > >> assistants.
> > > >> > Such communications and work product are
> > > >> > private and confidential. See User Agreement for details.
> > > >> >
> > > >> > ramos at leo1:~> which gcc
> > > >> > /opt/gcc/7.3.0/bin/gcc
> > > >> > ramos at leo1:~>
> > > >> >
> > > >> > -----Original Message-----
> > > >> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> Julie
> > > >> > Prestopnik
> > > >> >
> > > >> > Hi Gregory. I have not tested with version 6.3.0 of the
gcc
> > compiler,
> > > >> but
> > > >> > rather only with lower versions (specifically 4.8.5). We
would,
> of
> > > >> course,
> > > >> > want our code to work with higher versions as well. I have
not
> yet
> > > had
> > > >> an
> > > >> > opportunity to test with a higher version like 6.3.0. Do
you have
> > the
> > > >> > ability to compile MET using a lesser version of the gcc
compiler
> to
> > > >> see if
> > > >> > that clears up the issues you are experiencing?
> > > >> >
> > > >> > Julie
> > > >> >
> > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
Contractor,
> Code
> > > >> 7501.1
> > > >> > via RT <met_help at ucar.edu> wrote:
> > > >> >
> > > >> > >
> > > >> > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > >> > >
> > > >> > > Any updates or suggestions?
> > > >> > >
> > > >> > > Greg
> > > >> > >
> > > >> > > -----Original Message-----
> > > >> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > Julie
> > > >> > > Prestopnik
> > > >> > >
> > > >> > > Hi Greg. Thank you for passing along your config.log
file. I
> > see a
> > > >> > couple
> > > >> > > of linker problems in there:
> > > >> > >
> > > >> > > /usr/bin/ld: cannot find -lfl
> > > >> > >
> > > >> > > /usr/bin/ld: cannot find -ll
> > > >> > >
> > > >> > > Based on those errors, it looks like you may not have
flex and
> > bison
> > > >> > > installed. Please install those and try running
configure
> again.
> > > >> Please
> > > >> > > let us know how it goes.
> > > >> > >
> > > >> > > Also, I just wanted to address one other thing. In your
> original
> > > >> email
> > > >> > you
> > > >> > > listed the following as part of your "MET Configuration
> settings":
> > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil
-lm
> > -Xlinker
> > > >> > > -export-dynamic
> > > >> > >
> > > >> > > However, in your config.log file it looks like
MET_PYTHON_LD was
> > > >> actually
> > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
-lpython2.7
> > > -lpthread
> > > >> > -ldl
> > > >> > > -lutil -lm -Xlinker -export-dynamic", which is correct
because
> you
> > > >> need
> > > >> > to
> > > >> > > have that -L part in there, so I just want to ensure that
will
> > stay
> > > >> there
> > > >> > > when you run configure again.
> > > >> > >
> > > >> > > Thanks,
> > > >> > > Julie
> > > >> > >
> > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
Contractor,
> > Code
> > > >> > 7501.1
> > > >> > > via RT <met_help at ucar.edu> wrote:
> > > >> > >
> > > >> > > >
> > > >> > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> >
> > > >> > > >
> > > >> > > > Configure.log has no meaningful info:
> > > >> > > >
> > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > >> > > > -bash: [ramos at predict: command not found
> > > >> > > > [ramos at predict met-8.1]$
> > > >> > > >
> > > >> > > >
> > > >> > > > -----Original Message-----
> > > >> > > > From: John Halley Gotway via RT
[mailto:met_help at ucar.edu]
> > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET 8.1
> > > Julie
> > > >> > > > Prestopnik
> > > >> > > >
> > > >> > > > Hi Greg,
> > > >> > > >
> > > >> > > > I'll go ahead and assign this ticket to Julie, and she
should
> be
> > > >> > writing
> > > >> > > > you back in the next couple of days.
> > > >> > > >
> > > >> > > > I do know she'll want to see both the "configure.log"
file you
> > > >> > generated
> > > >> > > as
> > > >> > > > well as the "config.log" file from that same directory.
So
> > please
> > > >> send
> > > >> > > > those along when you get a chance.
> > > >> > > >
> > > >> > > > Thanks,
> > > >> > > > John
> > > >> > > >
> > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
Contractor,
> > > Code
> > > >> > > 7501.1
> > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > >> > > >
> > > >> > > > >
> > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted
upon.
> > > >> > > > > Transaction: Ticket created by
> Greg.Ramos.ctr at nrlmry.navy.mil
> > > >> > > > > Queue: met_help
> > > >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > >> > > > > Owner: Nobody
> > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > >> > > > > Status: new
> > > >> > > > > Ticket <URL:
> > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > >> > > >
> > > >> > > > >
> > > >> > > > >
> > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
Anaconda
> > 2.4.0.
> > > >> The
> > > >> > > user
> > > >> > > > > asked for 8.1. I took notes last time, but running
into
> > > problems:
> > > >> > > > >
> > > >> > > > > MET Configuration settings...
> > > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > >> > > > > export
> > > >> > > > >
> > > >> >
> > > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > > >> > > > > export
> > > >> > MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > > >> > > > > export MET_GSL=/software/depot/met-8.1/external_libs
> > > >> > > > > export
> > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > > >> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> > > >> > -fno-strict-aliasing
> > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
prototypes
> > > >> > > > > export MET_HDF=/software/depot/met-8.1/external_libs
> > > >> > > > > export
> > > >> > > > >
> > > >> > > >
> > > >> > >
> > > >> >
> > > >>
> > >
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > > >> > > > > export MET_HDFEOS=/software/depot/met-
8.1/external_libs
> > > >> > > > > export MET_NETCDF=/software/depot/met-
8.1/external_libs
> > > >> > > > > export
> > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > >> > > > > export
> MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil -lm
> > > >> -Xlinker
> > > >> > > > > -export-dynamic
> > > >> > > > > export MET_GRIB2C=/software/depot/met-
8.1/external_libs
> > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > >> > > > > export MET_BUFRLIB=/software/depot/met-
8.1/external_libs/lib
> > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > >> --enable-grib2
> > > >> > > > > --enable-modis --enable-mode_graphics --enable-
lidar2nc >
> > > >> > > configure.log
> > > >> > > > > 2>&1
> > > >> > > > > configure returned with non-zero (127) status
> > > >> > > > >
> > > >> > > > >
> > > >> > > >
> > > >> > > >
> > > >> > > >
> > > >> > >
> > > >> > >
> > > >> > >
> > > >> > >
> > > >> >
> > > >> >
> > > >> >
> > > >> >
> > > >>
> > > >>
> > > >>
> > >
> > >
> > >
> > >
> >
> >
> >
>
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Mon May 13 18:36:04 2019
Attached is the config.log for NetCDf it shows /usr/bin/gcc
Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat version.
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Monday, May 13, 2019 4:44 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Thank you. Unfortunately, that does not tell me if the libraries and
the
MET code were built with the same version of the compiler. I also do
not
see bufrlib in that list.
Can you please tell me - were the libraries and the MET code built
with the
same version of the compiler? I'm checking to see if, for example,
the
libraries were built with gcc-6.3.0 but the MET code was build with
gcc-4.4.7.
Thanks!
Julie
On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> You can see I am using those libraries for MET 8.1:
>
> [root at maury2 bin]# ldd modis_regrid
> linux-vdso.so.1 => (0x00007ffd449a3000)
> libpython2.7.so.1.0 =>
> /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
(0x00002ab75e1f3000)
> libpthread.so.0 => /lib64/libpthread.so.0
(0x00002ab75e63b000)
> libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> libutil.so.1 => /lib64/libutil.so.1 (0x00002ab75ea5c000)
> libpng16.so.16 =>
> /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> (0x00002ab75ec60000)
> libz.so.1 => /software/depot/met-
8.1/external_libs/lib/libz.so.1
> (0x00002ab75ee92000)
> libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> libnetcdf_c++4.so.1 =>
> /software/depot/met-8.1/external_libs/lib/libnetcdf_c++4.so.1
> (0x00002ab75f32f000)
> libnetcdf.so.11 =>
> /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> (0x00002ab75f57c000)
> libgsl.so.19 =>
> /software/depot/met-8.1/external_libs/lib/libgsl.so.19
(0x00002ab75f8bb000)
> libgslcblas.so.0 =>
> /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> (0x00002ab75fcfe000)
> libjpeg.so.9 => /software/depot/anaconda-
2.4.0/lib/libjpeg.so.9
> (0x00002ab75ff37000)
> libstdc++.so.6 =>
> /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
(0x00002ab760189000)
> libgcc_s.so.1 => /software/depot/anaconda-
2.4.0/lib/libgcc_s.so.1
> (0x00002ab7602cb000)
> libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> libhdf5_hl.so.10 =>
> /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> (0x00002ab760675000)
> libhdf5.so.10 =>
> /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
(0x00002ab760894000)
> librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> [root at maury2 bin]#
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 13, 2019 4:26 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Thank you, Greg. Can you please tell me - were the libraries and
the MET
> code built with the same version of the compiler. I'm checking to
see if,
> for example, the libraries were built with gcc-6.3.0 but the MET
code was
> build with gcc-4.4.7.
>
> It sounds like we need the libraries and the MET code to be built
with the
> same version of the compiler, in this case.
>
> Thanks for any information you can provide.
>
> Julie
>
> On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > Find the logs attached.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 2:15 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Could you please run the following:
> >
> > which pb2nc
> > ldd <full path to pb2nc> | grep gfortran
> >
> > and send me the output?
> >
> > Please also send your config.log and make.log file.
> >
> > Thank you!
> >
> > Julie
> >
> > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory, Contractor,
Code
> 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >
> > > I used the buildscript. It should build all of the external
libraries,
> so
> > > I believe everything was built with the same compiler.
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 2:07 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Hi Greg. Our developer suspects it may be a mismatched
> compiler/library
> > > version. Was BUFRLIB installed with the same compiler as MET?
Also,
> > what
> > > version of BURRLIB are you using?
> > >
> > > Thanks,
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
<jpresto at ucar.edu>
> > > wrote:
> > >
> > > > Hi Greg. I am checking in with another developer regarding
the error
> > you
> > > > experienced. Thank you for your patience.
> > > >
> > > > Julie
> > > >
> > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
Contractor, Code
> > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > >
> > > >>
> > > >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >>
> > > >> I was able to build on Red Hat using:
> > > >>
> > > >> [ramos at lorenz ~]$ gcc --version
> > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > >> This is free software; see the source for copying conditions.
There
> > is
> > > NO
> > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > > >> PURPOSE.
> > > >>
> > > >> [ramos at lorenz ~]$
> > > >>
> > > >> Not all of the tests passed, please see attachment.
> > > >>
> > > >> Greg
> > > >>
> > > >> -----Original Message-----
> > > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > >> Prestopnik
> > > >>
> > > >> Thank you for letting me know. I will proceed with trying to
> > reproduce
> > > >> the
> > > >> problem using the gcc-6.3.0. I will follow up once I have
more
> > > >> information.
> > > >>
> > > >> Julie
> > > >>
> > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
Contractor, Code
> > > 7501.1
> > > >> via RT <met_help at ucar.edu> wrote:
> > > >>
> > > >> >
> > > >> > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > >> >
> > > >> > When I compiled MET 8.0 the last time, it worked. I was
also able
> to
> > > >> > compile 8.0 on out Cray:
> > > >> >
> > > >> > [root at maury ramos]# ssh ramos at leo1
> > > >> > Password:
> > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > >> >
> > > >> > *** Welcome to Cray eLogin Server ***
> > > >> > Running 132MB Suse 12.3
> > > >> > 16 vcores, boot_memtotal: 257916mb
> > > >> >
> > > >> > You are accessing a U.S. Government (USG) Information
System (IS)
> > that
> > > >> is
> > > >> > provided for USG-authorized use only.
> > > >> > By using this IS (which includes any device attached to
this IS),
> > you
> > > >> > consent to the following conditions:
> > > >> > -The USG routinely intercepts and monitors communications
on this
> IS
> > > for
> > > >> > purposes including, but not limited to,
> > > >> > penetration testing, COMSEC monitoring, network operations
and
> > > defense,
> > > >> > personnel misconduct (PM), law enforcement (LE),
> > > >> > and counterintelligence (CI) investigations.
> > > >> > -At any time, the USG may inspect and seize data stored on
this
> IS.
> > > >> > -Communications using, or data stored on, this IS are not
private,
> > are
> > > >> > subject to routine monitoring, interception,
> > > >> > and search, and may be disclosed or used for any USG-
authorized
> > > purpose.
> > > >> > -This IS includes security measures (e.g., authentication
and
> access
> > > >> > controls) to protect USG interests -- not for
> > > >> > your personal benefit or privacy.
> > > >> > -Notwithstanding the above, using this IS does not
constitute
> > consent
> > > to
> > > >> > PM, LE or CI investigative searching or
> > > >> > monitoring of the content of privileged communications, or
work
> > > product,
> > > >> > related to personal representation or
> > > >> > services by attorneys, psychotherapists, or clergy, and
their
> > > >> assistants.
> > > >> > Such communications and work product are
> > > >> > private and confidential. See User Agreement for details.
> > > >> >
> > > >> > ramos at leo1:~> which gcc
> > > >> > /opt/gcc/7.3.0/bin/gcc
> > > >> > ramos at leo1:~>
> > > >> >
> > > >> > -----Original Message-----
> > > >> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> Julie
> > > >> > Prestopnik
> > > >> >
> > > >> > Hi Gregory. I have not tested with version 6.3.0 of the
gcc
> > compiler,
> > > >> but
> > > >> > rather only with lower versions (specifically 4.8.5). We
would,
> of
> > > >> course,
> > > >> > want our code to work with higher versions as well. I have
not
> yet
> > > had
> > > >> an
> > > >> > opportunity to test with a higher version like 6.3.0. Do
you have
> > the
> > > >> > ability to compile MET using a lesser version of the gcc
compiler
> to
> > > >> see if
> > > >> > that clears up the issues you are experiencing?
> > > >> >
> > > >> > Julie
> > > >> >
> > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
Contractor,
> Code
> > > >> 7501.1
> > > >> > via RT <met_help at ucar.edu> wrote:
> > > >> >
> > > >> > >
> > > >> > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > >> > >
> > > >> > > Any updates or suggestions?
> > > >> > >
> > > >> > > Greg
> > > >> > >
> > > >> > > -----Original Message-----
> > > >> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > Julie
> > > >> > > Prestopnik
> > > >> > >
> > > >> > > Hi Greg. Thank you for passing along your config.log
file. I
> > see a
> > > >> > couple
> > > >> > > of linker problems in there:
> > > >> > >
> > > >> > > /usr/bin/ld: cannot find -lfl
> > > >> > >
> > > >> > > /usr/bin/ld: cannot find -ll
> > > >> > >
> > > >> > > Based on those errors, it looks like you may not have
flex and
> > bison
> > > >> > > installed. Please install those and try running
configure
> again.
> > > >> Please
> > > >> > > let us know how it goes.
> > > >> > >
> > > >> > > Also, I just wanted to address one other thing. In your
> original
> > > >> email
> > > >> > you
> > > >> > > listed the following as part of your "MET Configuration
> settings":
> > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil
-lm
> > -Xlinker
> > > >> > > -export-dynamic
> > > >> > >
> > > >> > > However, in your config.log file it looks like
MET_PYTHON_LD was
> > > >> actually
> > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
-lpython2.7
> > > -lpthread
> > > >> > -ldl
> > > >> > > -lutil -lm -Xlinker -export-dynamic", which is correct
because
> you
> > > >> need
> > > >> > to
> > > >> > > have that -L part in there, so I just want to ensure that
will
> > stay
> > > >> there
> > > >> > > when you run configure again.
> > > >> > >
> > > >> > > Thanks,
> > > >> > > Julie
> > > >> > >
> > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
Contractor,
> > Code
> > > >> > 7501.1
> > > >> > > via RT <met_help at ucar.edu> wrote:
> > > >> > >
> > > >> > > >
> > > >> > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> >
> > > >> > > >
> > > >> > > > Configure.log has no meaningful info:
> > > >> > > >
> > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > >> > > > -bash: [ramos at predict: command not found
> > > >> > > > [ramos at predict met-8.1]$
> > > >> > > >
> > > >> > > >
> > > >> > > > -----Original Message-----
> > > >> > > > From: John Halley Gotway via RT
[mailto:met_help at ucar.edu]
> > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET 8.1
> > > Julie
> > > >> > > > Prestopnik
> > > >> > > >
> > > >> > > > Hi Greg,
> > > >> > > >
> > > >> > > > I'll go ahead and assign this ticket to Julie, and she
should
> be
> > > >> > writing
> > > >> > > > you back in the next couple of days.
> > > >> > > >
> > > >> > > > I do know she'll want to see both the "configure.log"
file you
> > > >> > generated
> > > >> > > as
> > > >> > > > well as the "config.log" file from that same directory.
So
> > please
> > > >> send
> > > >> > > > those along when you get a chance.
> > > >> > > >
> > > >> > > > Thanks,
> > > >> > > > John
> > > >> > > >
> > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
Contractor,
> > > Code
> > > >> > > 7501.1
> > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > >> > > >
> > > >> > > > >
> > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted
upon.
> > > >> > > > > Transaction: Ticket created by
> Greg.Ramos.ctr at nrlmry.navy.mil
> > > >> > > > > Queue: met_help
> > > >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > >> > > > > Owner: Nobody
> > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > >> > > > > Status: new
> > > >> > > > > Ticket <URL:
> > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > >> > > >
> > > >> > > > >
> > > >> > > > >
> > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
Anaconda
> > 2.4.0.
> > > >> The
> > > >> > > user
> > > >> > > > > asked for 8.1. I took notes last time, but running
into
> > > problems:
> > > >> > > > >
> > > >> > > > > MET Configuration settings...
> > > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > >> > > > > export
> > > >> > > > >
> > > >> >
> > > MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > > >> > > > > export
> > > >> > MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > > >> > > > > export MET_GSL=/software/depot/met-8.1/external_libs
> > > >> > > > > export
> > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > > >> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> > > >> > -fno-strict-aliasing
> > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
prototypes
> > > >> > > > > export MET_HDF=/software/depot/met-8.1/external_libs
> > > >> > > > > export
> > > >> > > > >
> > > >> > > >
> > > >> > >
> > > >> >
> > > >>
> > >
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > > >> > > > > export MET_HDFEOS=/software/depot/met-
8.1/external_libs
> > > >> > > > > export MET_NETCDF=/software/depot/met-
8.1/external_libs
> > > >> > > > > export
> > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > >> > > > > export
> MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil -lm
> > > >> -Xlinker
> > > >> > > > > -export-dynamic
> > > >> > > > > export MET_GRIB2C=/software/depot/met-
8.1/external_libs
> > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > >> > > > > export MET_BUFRLIB=/software/depot/met-
8.1/external_libs/lib
> > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > >> --enable-grib2
> > > >> > > > > --enable-modis --enable-mode_graphics --enable-
lidar2nc >
> > > >> > > configure.log
> > > >> > > > > 2>&1
> > > >> > > > > configure returned with non-zero (127) status
> > > >> > > > >
> > > >> > > > >
> > > >> > > >
> > > >> > > >
> > > >> > > >
> > > >> > >
> > > >> > >
> > > >> > >
> > > >> > >
> > > >> >
> > > >> >
> > > >> >
> > > >> >
> > > >>
> > > >>
> > > >>
> > >
> > >
> > >
> > >
> >
> >
> >
>
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Julie Prestopnik
Time: Tue May 14 09:18:04 2019
Good morning, Greg.
ldd indicates that libgfortran.so.4 is being used:
[ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-8.1/bin/pb2nc |grep
gfortran
libgfortran.so.4 =>
/software/depot/anaconda-2.4.0/lib/libgfortran.so.4
(0x00007fa8eeec7000)
It seems that you built the MET and libraries for MET with the same
compiler (4.4.7), however, the executables built with gcc 4.4.7 do not
work
with libgfortran.so.4.
>From your config.log file, it seems that the path for libgfortan.so.4
is
from "-L/software/depot/anaconda-2.4.0/lib". And it seems that the
executables are compiled using gcc 4.4.7 linking libgfortan.so.4.
We know:
- gcc 4.4.7 & gcc 6.3.0 compiler works with libgfortan.so.3.
- gcc 7.x compiler works with libgfortan.so.4.
- gcc 8.x compiler works with libgfortan.so.5.
What we don't know is whether or not gcc 4.4.7 supports
libgfortan.so.4.
It seems there are two options:
1) Try to rebuild anaconda using gcc 4.4.7
2) Try to ebuild MET and its supporting libraries with gcc 7.x so that
it
supports the libgfortan.so.4 library being linked in.
I hope that helps.
Julie
On Mon, May 13, 2019 at 6:36 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
via RT <met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
>
> Attached is the config.log for NetCDf it shows /usr/bin/gcc
>
> Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat version.
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 13, 2019 4:44 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Thank you. Unfortunately, that does not tell me if the libraries
and the
> MET code were built with the same version of the compiler. I also
do not
> see bufrlib in that list.
>
> Can you please tell me - were the libraries and the MET code built
with the
> same version of the compiler? I'm checking to see if, for example,
the
> libraries were built with gcc-6.3.0 but the MET code was build with
> gcc-4.4.7.
>
> Thanks!
>
> Julie
>
> On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory, Contractor, Code
7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > You can see I am using those libraries for MET 8.1:
> >
> > [root at maury2 bin]# ldd modis_regrid
> > linux-vdso.so.1 => (0x00007ffd449a3000)
> > libpython2.7.so.1.0 =>
> > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> (0x00002ab75e1f3000)
> > libpthread.so.0 => /lib64/libpthread.so.0
(0x00002ab75e63b000)
> > libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> > libutil.so.1 => /lib64/libutil.so.1 (0x00002ab75ea5c000)
> > libpng16.so.16 =>
> > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > (0x00002ab75ec60000)
> > libz.so.1 => /software/depot/met-
8.1/external_libs/lib/libz.so.1
> > (0x00002ab75ee92000)
> > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > libnetcdf_c++4.so.1 =>
> > /software/depot/met-8.1/external_libs/lib/libnetcdf_c++4.so.1
> > (0x00002ab75f32f000)
> > libnetcdf.so.11 =>
> > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > (0x00002ab75f57c000)
> > libgsl.so.19 =>
> > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> (0x00002ab75f8bb000)
> > libgslcblas.so.0 =>
> > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > (0x00002ab75fcfe000)
> > libjpeg.so.9 => /software/depot/anaconda-
2.4.0/lib/libjpeg.so.9
> > (0x00002ab75ff37000)
> > libstdc++.so.6 =>
> > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
(0x00002ab760189000)
> > libgcc_s.so.1 => /software/depot/anaconda-
2.4.0/lib/libgcc_s.so.1
> > (0x00002ab7602cb000)
> > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > libhdf5_hl.so.10 =>
> > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > (0x00002ab760675000)
> > libhdf5.so.10 =>
> > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> (0x00002ab760894000)
> > librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> > [root at maury2 bin]#
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 4:26 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Thank you, Greg. Can you please tell me - were the libraries and
the MET
> > code built with the same version of the compiler. I'm checking to
see
> if,
> > for example, the libraries were built with gcc-6.3.0 but the MET
code was
> > build with gcc-4.4.7.
> >
> > It sounds like we need the libraries and the MET code to be built
with
> the
> > same version of the compiler, in this case.
> >
> > Thanks for any information you can provide.
> >
> > Julie
> >
> > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor,
Code
> 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >
> > > Find the logs attached.
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 2:15 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Could you please run the following:
> > >
> > > which pb2nc
> > > ldd <full path to pb2nc> | grep gfortran
> > >
> > > and send me the output?
> > >
> > > Please also send your config.log and make.log file.
> > >
> > > Thank you!
> > >
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1
> > > via RT <met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >
> > > > I used the buildscript. It should build all of the external
> libraries,
> > so
> > > > I believe everything was built with the same compiler.
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > Prestopnik
> > > >
> > > > Hi Greg. Our developer suspects it may be a mismatched
> > compiler/library
> > > > version. Was BUFRLIB installed with the same compiler as
MET?
> Also,
> > > what
> > > > version of BURRLIB are you using?
> > > >
> > > > Thanks,
> > > > Julie
> > > >
> > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
<jpresto at ucar.edu>
> > > > wrote:
> > > >
> > > > > Hi Greg. I am checking in with another developer regarding
the
> error
> > > you
> > > > > experienced. Thank you for your patience.
> > > > >
> > > > > Julie
> > > > >
> > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
Contractor,
> Code
> > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > >
> > > > >>
> > > > >> <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > > >>
> > > > >> I was able to build on Red Hat using:
> > > > >>
> > > > >> [ramos at lorenz ~]$ gcc --version
> > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > >> This is free software; see the source for copying
conditions.
> There
> > > is
> > > > NO
> > > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > > > >> PURPOSE.
> > > > >>
> > > > >> [ramos at lorenz ~]$
> > > > >>
> > > > >> Not all of the tests passed, please see attachment.
> > > > >>
> > > > >> Greg
> > > > >>
> > > > >> -----Original Message-----
> > > > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> Julie
> > > > >> Prestopnik
> > > > >>
> > > > >> Thank you for letting me know. I will proceed with trying
to
> > > reproduce
> > > > >> the
> > > > >> problem using the gcc-6.3.0. I will follow up once I have
more
> > > > >> information.
> > > > >>
> > > > >> Julie
> > > > >>
> > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
Contractor,
> Code
> > > > 7501.1
> > > > >> via RT <met_help at ucar.edu> wrote:
> > > > >>
> > > > >> >
> > > > >> > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > > >> >
> > > > >> > When I compiled MET 8.0 the last time, it worked. I was
also
> able
> > to
> > > > >> > compile 8.0 on out Cray:
> > > > >> >
> > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > >> > Password:
> > > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > > >> >
> > > > >> > *** Welcome to Cray eLogin Server ***
> > > > >> > Running 132MB Suse 12.3
> > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > >> >
> > > > >> > You are accessing a U.S. Government (USG) Information
System
> (IS)
> > > that
> > > > >> is
> > > > >> > provided for USG-authorized use only.
> > > > >> > By using this IS (which includes any device attached to
this
> IS),
> > > you
> > > > >> > consent to the following conditions:
> > > > >> > -The USG routinely intercepts and monitors communications
on
> this
> > IS
> > > > for
> > > > >> > purposes including, but not limited to,
> > > > >> > penetration testing, COMSEC monitoring, network
operations and
> > > > defense,
> > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > >> > and counterintelligence (CI) investigations.
> > > > >> > -At any time, the USG may inspect and seize data stored
on this
> > IS.
> > > > >> > -Communications using, or data stored on, this IS are not
> private,
> > > are
> > > > >> > subject to routine monitoring, interception,
> > > > >> > and search, and may be disclosed or used for any USG-
authorized
> > > > purpose.
> > > > >> > -This IS includes security measures (e.g., authentication
and
> > access
> > > > >> > controls) to protect USG interests -- not for
> > > > >> > your personal benefit or privacy.
> > > > >> > -Notwithstanding the above, using this IS does not
constitute
> > > consent
> > > > to
> > > > >> > PM, LE or CI investigative searching or
> > > > >> > monitoring of the content of privileged communications,
or work
> > > > product,
> > > > >> > related to personal representation or
> > > > >> > services by attorneys, psychotherapists, or clergy, and
their
> > > > >> assistants.
> > > > >> > Such communications and work product are
> > > > >> > private and confidential. See User Agreement for details.
> > > > >> >
> > > > >> > ramos at leo1:~> which gcc
> > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > >> > ramos at leo1:~>
> > > > >> >
> > > > >> > -----Original Message-----
> > > > >> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > Julie
> > > > >> > Prestopnik
> > > > >> >
> > > > >> > Hi Gregory. I have not tested with version 6.3.0 of the
gcc
> > > compiler,
> > > > >> but
> > > > >> > rather only with lower versions (specifically 4.8.5). We
would,
> > of
> > > > >> course,
> > > > >> > want our code to work with higher versions as well. I
have not
> > yet
> > > > had
> > > > >> an
> > > > >> > opportunity to test with a higher version like 6.3.0. Do
you
> have
> > > the
> > > > >> > ability to compile MET using a lesser version of the gcc
> compiler
> > to
> > > > >> see if
> > > > >> > that clears up the issues you are experiencing?
> > > > >> >
> > > > >> > Julie
> > > > >> >
> > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
Contractor,
> > Code
> > > > >> 7501.1
> > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > >> >
> > > > >> > >
> > > > >> > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> >
> > > > >> > >
> > > > >> > > Any updates or suggestions?
> > > > >> > >
> > > > >> > > Greg
> > > > >> > >
> > > > >> > > -----Original Message-----
> > > > >> > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET 8.1
> > > Julie
> > > > >> > > Prestopnik
> > > > >> > >
> > > > >> > > Hi Greg. Thank you for passing along your config.log
file. I
> > > see a
> > > > >> > couple
> > > > >> > > of linker problems in there:
> > > > >> > >
> > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > >> > >
> > > > >> > > /usr/bin/ld: cannot find -ll
> > > > >> > >
> > > > >> > > Based on those errors, it looks like you may not have
flex and
> > > bison
> > > > >> > > installed. Please install those and try running
configure
> > again.
> > > > >> Please
> > > > >> > > let us know how it goes.
> > > > >> > >
> > > > >> > > Also, I just wanted to address one other thing. In
your
> > original
> > > > >> email
> > > > >> > you
> > > > >> > > listed the following as part of your "MET Configuration
> > settings":
> > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil
-lm
> > > -Xlinker
> > > > >> > > -export-dynamic
> > > > >> > >
> > > > >> > > However, in your config.log file it looks like
MET_PYTHON_LD
> was
> > > > >> actually
> > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
-lpython2.7
> > > > -lpthread
> > > > >> > -ldl
> > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is correct
because
> > you
> > > > >> need
> > > > >> > to
> > > > >> > > have that -L part in there, so I just want to ensure
that will
> > > stay
> > > > >> there
> > > > >> > > when you run configure again.
> > > > >> > >
> > > > >> > > Thanks,
> > > > >> > > Julie
> > > > >> > >
> > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
Contractor,
> > > Code
> > > > >> > 7501.1
> > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > >> > >
> > > > >> > > >
> > > > >> > > > <URL:
> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > >
> > > > >> > > >
> > > > >> > > > Configure.log has no meaningful info:
> > > > >> > > >
> > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > >> > > > -bash: [ramos at predict: command not found
> > > > >> > > > [ramos at predict met-8.1]$
> > > > >> > > >
> > > > >> > > >
> > > > >> > > > -----Original Message-----
> > > > >> > > > From: John Halley Gotway via RT
[mailto:met_help at ucar.edu]
> > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> 8.1
> > > > Julie
> > > > >> > > > Prestopnik
> > > > >> > > >
> > > > >> > > > Hi Greg,
> > > > >> > > >
> > > > >> > > > I'll go ahead and assign this ticket to Julie, and
she
> should
> > be
> > > > >> > writing
> > > > >> > > > you back in the next couple of days.
> > > > >> > > >
> > > > >> > > > I do know she'll want to see both the "configure.log"
file
> you
> > > > >> > generated
> > > > >> > > as
> > > > >> > > > well as the "config.log" file from that same
directory. So
> > > please
> > > > >> send
> > > > >> > > > those along when you get a chance.
> > > > >> > > >
> > > > >> > > > Thanks,
> > > > >> > > > John
> > > > >> > > >
> > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
> Contractor,
> > > > Code
> > > > >> > > 7501.1
> > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > >> > > >
> > > > >> > > > >
> > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted
upon.
> > > > >> > > > > Transaction: Ticket created by
> > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > >> > > > > Queue: met_help
> > > > >> > > > > Subject: Help regarding MET 8.1 Julie
Prestopnik
> > > > >> > > > > Owner: Nobody
> > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > >> > > > > Status: new
> > > > >> > > > > Ticket <URL:
> > > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > >> > > >
> > > > >> > > > >
> > > > >> > > > >
> > > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
Anaconda
> > > 2.4.0.
> > > > >> The
> > > > >> > > user
> > > > >> > > > > asked for 8.1. I took notes last time, but running
into
> > > > problems:
> > > > >> > > > >
> > > > >> > > > > MET Configuration settings...
> > > > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > > >> > > > > export
> > > > >> > > > >
> > > > >> >
> > > >
> MET_FREETYPEINC=/software/depot/met-
8.1/external_libs/include/freetype2
> > > > >> > > > > export
> > > > >> > MET_CAIROINC=/software/depot/met-
8.1/external_libs/include/cairo
> > > > >> > > > > export MET_GSL=/software/depot/met-
8.1/external_libs
> > > > >> > > > > export
> > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
2.4.0/include/python2.7
> > > > >> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> > > > >> > -fno-strict-aliasing
> > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
> -Wstrict-prototypes
> > > > >> > > > > export MET_HDF=/software/depot/met-
8.1/external_libs
> > > > >> > > > > export
> > > > >> > > > >
> > > > >> > > >
> > > > >> > >
> > > > >> >
> > > > >>
> > > >
> > >
> >
> MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
8.1/tar_files.tar
> > > > >> > > > > export MET_HDFEOS=/software/depot/met-
8.1/external_libs
> > > > >> > > > > export MET_NETCDF=/software/depot/met-
8.1/external_libs
> > > > >> > > > > export
> > > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > > >> > > > > export
> > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil -lm
> > > > >> -Xlinker
> > > > >> > > > > -export-dynamic
> > > > >> > > > > export MET_GRIB2C=/software/depot/met-
8.1/external_libs
> > > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > > >> > > > > export
> MET_BUFRLIB=/software/depot/met-8.1/external_libs/lib
> > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-
8.1
> > > > >> --enable-grib2
> > > > >> > > > > --enable-modis --enable-mode_graphics --enable-
lidar2nc >
> > > > >> > > configure.log
> > > > >> > > > > 2>&1
> > > > >> > > > > configure returned with non-zero (127) status
> > > > >> > > > >
> > > > >> > > > >
> > > > >> > > >
> > > > >> > > >
> > > > >> > > >
> > > > >> > >
> > > > >> > >
> > > > >> > >
> > > > >> > >
> > > > >> >
> > > > >> >
> > > > >> >
> > > > >> >
> > > > >>
> > > > >>
> > > > >>
> > > >
> > > >
> > > >
> > > >
> > >
> > >
> > >
> >
> >
> >
> >
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Howard Soh
Time: Thu May 16 14:10:47 2019
Hello,
Is gcc/gfortran 7.x compiler available?
The problem was caused by the path for python library
(/software/depot/anaconda-2.4.0/lib). libgfortran.so.4 exists there
from the ldd output. It was used on building MET. MET was compiled
with gcc 4.4.7 which supports only libgfortran.so.3, and linked with
libgfortran.so.4 because of MET_PYTHON_LD configuration. Some
libraries do not support the backward compatibility. libgfortran.so is
one of them. In this case, the compiler version and library version
should match.
[ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-8.1/bin/pb2nc
|grep gfortran
libgfortran.so.4 => /software/depot/anaconda-
2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
-lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-dynamic
The solution is compiling third party libraries and MET with version
7.x gcc/gfortran. Version 8.x gcc/gfortran supports libgfortran.so.5,
So the same problem will happen if MET is built with gcc/gfortran 6.x
or gcc/gfortran 8.x.
Cheers,
Howard
On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> Attached is the config.log for NetCDf it shows /usr/bin/gcc
>
> Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat version.
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 13, 2019 4:44 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Thank you. Unfortunately, that does not tell me if the libraries
and
> the
> MET code were built with the same version of the compiler. I also
do
> not
> see bufrlib in that list.
>
> Can you please tell me - were the libraries and the MET code built
> with the
> same version of the compiler? I'm checking to see if, for example,
> the
> libraries were built with gcc-6.3.0 but the MET code was build with
> gcc-4.4.7.
>
> Thanks!
>
> Julie
>
> On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory, Contractor, Code
> 7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > You can see I am using those libraries for MET 8.1:
> >
> > [root at maury2 bin]# ldd modis_regrid
> > linux-vdso.so.1 => (0x00007ffd449a3000)
> > libpython2.7.so.1.0 =>
> > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > (0x00002ab75e1f3000)
> > libpthread.so.0 => /lib64/libpthread.so.0
> > (0x00002ab75e63b000)
> > libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> > libutil.so.1 => /lib64/libutil.so.1 (0x00002ab75ea5c000)
> > libpng16.so.16 =>
> > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > (0x00002ab75ec60000)
> > libz.so.1 => /software/depot/met-
> > 8.1/external_libs/lib/libz.so.1
> > (0x00002ab75ee92000)
> > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > libnetcdf_c++4.so.1 =>
> > /software/depot/met-8.1/external_libs/lib/libnetcdf_c++4.so.1
> > (0x00002ab75f32f000)
> > libnetcdf.so.11 =>
> > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > (0x00002ab75f57c000)
> > libgsl.so.19 =>
> > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > (0x00002ab75f8bb000)
> > libgslcblas.so.0 =>
> > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > (0x00002ab75fcfe000)
> > libjpeg.so.9 => /software/depot/anaconda-
> > 2.4.0/lib/libjpeg.so.9
> > (0x00002ab75ff37000)
> > libstdc++.so.6 =>
> > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > (0x00002ab760189000)
> > libgcc_s.so.1 => /software/depot/anaconda-
> > 2.4.0/lib/libgcc_s.so.1
> > (0x00002ab7602cb000)
> > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > libhdf5_hl.so.10 =>
> > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > (0x00002ab760675000)
> > libhdf5.so.10 =>
> > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > (0x00002ab760894000)
> > librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> > [root at maury2 bin]#
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 4:26 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Thank you, Greg. Can you please tell me - were the libraries and
the
> > MET
> > code built with the same version of the compiler. I'm checking to
> > see if,
> > for example, the libraries were built with gcc-6.3.0 but the MET
code
> > was
> > build with gcc-4.4.7.
> >
> > It sounds like we need the libraries and the MET code to be built
> > with the
> > same version of the compiler, in this case.
> >
> > Thanks for any information you can provide.
> >
> > Julie
> >
> > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >
> > > Find the logs attached.
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 2:15 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Could you please run the following:
> > >
> > > which pb2nc
> > > ldd <full path to pb2nc> | grep gfortran
> > >
> > > and send me the output?
> > >
> > > Please also send your config.log and make.log file.
> > >
> > > Thank you!
> > >
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory, Contractor,
> > > Code
> > 7501.1
> > > via RT <met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >
> > > > I used the buildscript. It should build all of the external
> > > > libraries,
> > so
> > > > I believe everything was built with the same compiler.
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > Julie
> > > > Prestopnik
> > > >
> > > > Hi Greg. Our developer suspects it may be a mismatched
> > compiler/library
> > > > version. Was BUFRLIB installed with the same compiler as
MET?
> > > > Also,
> > > what
> > > > version of BURRLIB are you using?
> > > >
> > > > Thanks,
> > > > Julie
> > > >
> > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > <jpresto at ucar.edu>
> > > > wrote:
> > > >
> > > > > Hi Greg. I am checking in with another developer regarding
the
> > > > > error
> > > you
> > > > > experienced. Thank you for your patience.
> > > > >
> > > > > Julie
> > > > >
> > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
Contractor,
> > > > > Code
> > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > >
> > > > >>
> > > > >> <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > >> >
> > > > >>
> > > > >> I was able to build on Red Hat using:
> > > > >>
> > > > >> [ramos at lorenz ~]$ gcc --version
> > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > >> This is free software; see the source for copying
conditions.
> > > > >> There
> > > is
> > > > NO
> > > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > >> PARTICULAR
> > > > >> PURPOSE.
> > > > >>
> > > > >> [ramos at lorenz ~]$
> > > > >>
> > > > >> Not all of the tests passed, please see attachment.
> > > > >>
> > > > >> Greg
> > > > >>
> > > > >> -----Original Message-----
> > > > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > >> Julie
> > > > >> Prestopnik
> > > > >>
> > > > >> Thank you for letting me know. I will proceed with trying
to
> > > reproduce
> > > > >> the
> > > > >> problem using the gcc-6.3.0. I will follow up once I have
> > > > >> more
> > > > >> information.
> > > > >>
> > > > >> Julie
> > > > >>
> > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
Contractor,
> > > > >> Code
> > > > 7501.1
> > > > >> via RT <met_help at ucar.edu> wrote:
> > > > >>
> > > > >> >
> > > > >> > <URL:
> > > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > > >> >
> > > > >> > When I compiled MET 8.0 the last time, it worked. I was
also
> > > > >> > able
> > to
> > > > >> > compile 8.0 on out Cray:
> > > > >> >
> > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > >> > Password:
> > > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > > >> >
> > > > >> > *** Welcome to Cray eLogin Server ***
> > > > >> > Running 132MB Suse 12.3
> > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > >> >
> > > > >> > You are accessing a U.S. Government (USG) Information
System
> > > > >> > (IS)
> > > that
> > > > >> is
> > > > >> > provided for USG-authorized use only.
> > > > >> > By using this IS (which includes any device attached to
this
> > > > >> > IS),
> > > you
> > > > >> > consent to the following conditions:
> > > > >> > -The USG routinely intercepts and monitors communications
on
> > > > >> > this
> > IS
> > > > for
> > > > >> > purposes including, but not limited to,
> > > > >> > penetration testing, COMSEC monitoring, network
operations
> > > > >> > and
> > > > defense,
> > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > >> > and counterintelligence (CI) investigations.
> > > > >> > -At any time, the USG may inspect and seize data stored
on
> > > > >> > this
> > IS.
> > > > >> > -Communications using, or data stored on, this IS are not
> > > > >> > private,
> > > are
> > > > >> > subject to routine monitoring, interception,
> > > > >> > and search, and may be disclosed or used for any USG-
> > > > >> > authorized
> > > > purpose.
> > > > >> > -This IS includes security measures (e.g., authentication
> > > > >> > and
> > access
> > > > >> > controls) to protect USG interests -- not for
> > > > >> > your personal benefit or privacy.
> > > > >> > -Notwithstanding the above, using this IS does not
> > > > >> > constitute
> > > consent
> > > > to
> > > > >> > PM, LE or CI investigative searching or
> > > > >> > monitoring of the content of privileged communications,
or
> > > > >> > work
> > > > product,
> > > > >> > related to personal representation or
> > > > >> > services by attorneys, psychotherapists, or clergy, and
> > > > >> > their
> > > > >> assistants.
> > > > >> > Such communications and work product are
> > > > >> > private and confidential. See User Agreement for details.
> > > > >> >
> > > > >> > ramos at leo1:~> which gcc
> > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > >> > ramos at leo1:~>
> > > > >> >
> > > > >> > -----Original Message-----
> > > > >> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > Julie
> > > > >> > Prestopnik
> > > > >> >
> > > > >> > Hi Gregory. I have not tested with version 6.3.0 of the
gcc
> > > compiler,
> > > > >> but
> > > > >> > rather only with lower versions (specifically 4.8.5). We
> > > > >> > would,
> > of
> > > > >> course,
> > > > >> > want our code to work with higher versions as well. I
have
> > > > >> > not
> > yet
> > > > had
> > > > >> an
> > > > >> > opportunity to test with a higher version like 6.3.0. Do
> > > > >> > you have
> > > the
> > > > >> > ability to compile MET using a lesser version of the gcc
> > > > >> > compiler
> > to
> > > > >> see if
> > > > >> > that clears up the issues you are experiencing?
> > > > >> >
> > > > >> > Julie
> > > > >> >
> > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
> > > > >> > Contractor,
> > Code
> > > > >> 7501.1
> > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > >> >
> > > > >> > >
> > > > >> > > <URL:
> > > > >> > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > > >> > >
> > > > >> > > Any updates or suggestions?
> > > > >> > >
> > > > >> > > Greg
> > > > >> > >
> > > > >> > > -----Original Message-----
> > > > >> > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > >> > > 8.1
> > > Julie
> > > > >> > > Prestopnik
> > > > >> > >
> > > > >> > > Hi Greg. Thank you for passing along your config.log
> > > > >> > > file. I
> > > see a
> > > > >> > couple
> > > > >> > > of linker problems in there:
> > > > >> > >
> > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > >> > >
> > > > >> > > /usr/bin/ld: cannot find -ll
> > > > >> > >
> > > > >> > > Based on those errors, it looks like you may not have
flex
> > > > >> > > and
> > > bison
> > > > >> > > installed. Please install those and try running
configure
> > again.
> > > > >> Please
> > > > >> > > let us know how it goes.
> > > > >> > >
> > > > >> > > Also, I just wanted to address one other thing. In
your
> > original
> > > > >> email
> > > > >> > you
> > > > >> > > listed the following as part of your "MET Configuration
> > settings":
> > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil
-lm
> > > -Xlinker
> > > > >> > > -export-dynamic
> > > > >> > >
> > > > >> > > However, in your config.log file it looks like
> > > > >> > > MET_PYTHON_LD was
> > > > >> actually
> > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
> > > > >> > > -lpython2.7
> > > > -lpthread
> > > > >> > -ldl
> > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is correct
> > > > >> > > because
> > you
> > > > >> need
> > > > >> > to
> > > > >> > > have that -L part in there, so I just want to ensure
that
> > > > >> > > will
> > > stay
> > > > >> there
> > > > >> > > when you run configure again.
> > > > >> > >
> > > > >> > > Thanks,
> > > > >> > > Julie
> > > > >> > >
> > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
> > > > >> > > Contractor,
> > > Code
> > > > >> > 7501.1
> > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > >> > >
> > > > >> > > >
> > > > >> > > > <URL:
> > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > >
> > > > >> > > >
> > > > >> > > > Configure.log has no meaningful info:
> > > > >> > > >
> > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > >> > > > -bash: [ramos at predict: command not found
> > > > >> > > > [ramos at predict met-8.1]$
> > > > >> > > >
> > > > >> > > >
> > > > >> > > > -----Original Message-----
> > > > >> > > > From: John Halley Gotway via RT
> > > > >> > > > [mailto:met_help at ucar.edu]
> > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > >> > > > 8.1
> > > > Julie
> > > > >> > > > Prestopnik
> > > > >> > > >
> > > > >> > > > Hi Greg,
> > > > >> > > >
> > > > >> > > > I'll go ahead and assign this ticket to Julie, and
she
> > > > >> > > > should
> > be
> > > > >> > writing
> > > > >> > > > you back in the next couple of days.
> > > > >> > > >
> > > > >> > > > I do know she'll want to see both the "configure.log"
> > > > >> > > > file you
> > > > >> > generated
> > > > >> > > as
> > > > >> > > > well as the "config.log" file from that same
directory.
> > > > >> > > > So
> > > please
> > > > >> send
> > > > >> > > > those along when you get a chance.
> > > > >> > > >
> > > > >> > > > Thanks,
> > > > >> > > > John
> > > > >> > > >
> > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
> > > > >> > > > Contractor,
> > > > Code
> > > > >> > > 7501.1
> > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > >> > > >
> > > > >> > > > >
> > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted
> > > > >> > > > > upon.
> > > > >> > > > > Transaction: Ticket created by
> > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > >> > > > > Queue: met_help
> > > > >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > > >> > > > > Owner: Nobody
> > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > >> > > > > Status: new
> > > > >> > > > > Ticket <URL:
> > > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > >> > > >
> > > > >> > > > >
> > > > >> > > > >
> > > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
> > > > >> > > > > Anaconda
> > > 2.4.0.
> > > > >> The
> > > > >> > > user
> > > > >> > > > > asked for 8.1. I took notes last time, but running
> > > > >> > > > > into
> > > > problems:
> > > > >> > > > >
> > > > >> > > > > MET Configuration settings...
> > > > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > > >> > > > > export
> > > > >> > > > >
> > > > >> >
> > > > MET_FREETYPEINC=/software/depot/met-
> > > > 8.1/external_libs/include/freetype2
> > > > >> > > > > export
> > > > >> > MET_CAIROINC=/software/depot/met-
> > > > >> > 8.1/external_libs/include/cairo
> > > > >> > > > > export MET_GSL=/software/depot/met-
8.1/external_libs
> > > > >> > > > > export
> > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > >> > 2.4.0/include/python2.7
> > > > >> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> > > > >> > -fno-strict-aliasing
> > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
> > > > >> > > > > prototypes
> > > > >> > > > > export MET_HDF=/software/depot/met-
8.1/external_libs
> > > > >> > > > > export
> > > > >> > > > >
> > > > >> > > >
> > > > >> > >
> > > > >> >
> > > > >>
> > > >
> > >
> > MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
> > 8.1/tar_files.tar
> > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > >> > > > > 8.1/external_libs
> > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > >> > > > > 8.1/external_libs
> > > > >> > > > > export
> > > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > > >> > > > > export
> > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil
> > > > >> > > > > -lm
> > > > >> -Xlinker
> > > > >> > > > > -export-dynamic
> > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > >> > > > > 8.1/external_libs
> > > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > >> > > > > 8.1/external_libs/lib
> > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-
8.1
> > > > >> --enable-grib2
> > > > >> > > > > --enable-modis --enable-mode_graphics --enable-
> > > > >> > > > > lidar2nc >
> > > > >> > > configure.log
> > > > >> > > > > 2> &1
> > > > >> > > > > configure returned with non-zero (127) status
> > > > >> > > > >
> > > > >> > > > >
> > > > >> > > >
> > > > >> > > >
> > > > >> > > >
> > > > >> > >
> > > > >> > >
> > > > >> > >
> > > > >> > >
> > > > >> >
> > > > >> >
> > > > >> >
> > > > >> >
> > > > >>
> > > > >>
> > > > >>
> > > >
> > > >
> > > >
> > > >
> > >
> > >
> > >
> >
> >
> >
> >
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Thu May 16 14:17:40 2019
I was able to compile Met 8.0 on our Cray with:
ramos at leo1:~> gcc --version
gcc (GCC) 7.3.0 20180125 (Cray Inc.)
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There
is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE.
ramos at leo1:~> gfortran --version
GNU Fortran (GCC) 7.3.0 20180125 (Cray Inc.)
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There
is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE.
ramos at leo1:~>
We don't have that version on our Red Hat systems. Met 8.0 worked on
RH, but 8.1 failed on the 'make test'. The user says she is fine with
the executables so far. I will have to build a gfortran 7.x version.
Greg
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Thursday, May 16, 2019 1:11 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Hello,
Is gcc/gfortran 7.x compiler available?
The problem was caused by the path for python library
(/software/depot/anaconda-2.4.0/lib). libgfortran.so.4 exists there
from the ldd output. It was used on building MET. MET was compiled
with gcc 4.4.7 which supports only libgfortran.so.3, and linked with
libgfortran.so.4 because of MET_PYTHON_LD configuration. Some
libraries do not support the backward compatibility. libgfortran.so is
one of them. In this case, the compiler version and library version
should match.
[ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-8.1/bin/pb2nc
|grep gfortran
libgfortran.so.4 => /software/depot/anaconda-
2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
-lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-dynamic
The solution is compiling third party libraries and MET with version
7.x gcc/gfortran. Version 8.x gcc/gfortran supports libgfortran.so.5,
So the same problem will happen if MET is built with gcc/gfortran 6.x
or gcc/gfortran 8.x.
Cheers,
Howard
On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> Attached is the config.log for NetCDf it shows /usr/bin/gcc
>
> Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat version.
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Monday, May 13, 2019 4:44 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Thank you. Unfortunately, that does not tell me if the libraries
and
> the
> MET code were built with the same version of the compiler. I also
do
> not
> see bufrlib in that list.
>
> Can you please tell me - were the libraries and the MET code built
> with the
> same version of the compiler? I'm checking to see if, for example,
> the
> libraries were built with gcc-6.3.0 but the MET code was build with
> gcc-4.4.7.
>
> Thanks!
>
> Julie
>
> On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory, Contractor, Code
> 7501.1
> via RT <met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> >
> > You can see I am using those libraries for MET 8.1:
> >
> > [root at maury2 bin]# ldd modis_regrid
> > linux-vdso.so.1 => (0x00007ffd449a3000)
> > libpython2.7.so.1.0 =>
> > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > (0x00002ab75e1f3000)
> > libpthread.so.0 => /lib64/libpthread.so.0
> > (0x00002ab75e63b000)
> > libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> > libutil.so.1 => /lib64/libutil.so.1 (0x00002ab75ea5c000)
> > libpng16.so.16 =>
> > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > (0x00002ab75ec60000)
> > libz.so.1 => /software/depot/met-
> > 8.1/external_libs/lib/libz.so.1
> > (0x00002ab75ee92000)
> > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > libnetcdf_c++4.so.1 =>
> > /software/depot/met-8.1/external_libs/lib/libnetcdf_c++4.so.1
> > (0x00002ab75f32f000)
> > libnetcdf.so.11 =>
> > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > (0x00002ab75f57c000)
> > libgsl.so.19 =>
> > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > (0x00002ab75f8bb000)
> > libgslcblas.so.0 =>
> > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > (0x00002ab75fcfe000)
> > libjpeg.so.9 => /software/depot/anaconda-
> > 2.4.0/lib/libjpeg.so.9
> > (0x00002ab75ff37000)
> > libstdc++.so.6 =>
> > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > (0x00002ab760189000)
> > libgcc_s.so.1 => /software/depot/anaconda-
> > 2.4.0/lib/libgcc_s.so.1
> > (0x00002ab7602cb000)
> > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > libhdf5_hl.so.10 =>
> > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > (0x00002ab760675000)
> > libhdf5.so.10 =>
> > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > (0x00002ab760894000)
> > librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> > [root at maury2 bin]#
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 4:26 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Thank you, Greg. Can you please tell me - were the libraries and
the
> > MET
> > code built with the same version of the compiler. I'm checking to
> > see if,
> > for example, the libraries were built with gcc-6.3.0 but the MET
code
> > was
> > build with gcc-4.4.7.
> >
> > It sounds like we need the libraries and the MET code to be built
> > with the
> > same version of the compiler, in this case.
> >
> > Thanks for any information you can provide.
> >
> > Julie
> >
> > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >
> > > Find the logs attached.
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 2:15 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Could you please run the following:
> > >
> > > which pb2nc
> > > ldd <full path to pb2nc> | grep gfortran
> > >
> > > and send me the output?
> > >
> > > Please also send your config.log and make.log file.
> > >
> > > Thank you!
> > >
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory, Contractor,
> > > Code
> > 7501.1
> > > via RT <met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >
> > > > I used the buildscript. It should build all of the external
> > > > libraries,
> > so
> > > > I believe everything was built with the same compiler.
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > Julie
> > > > Prestopnik
> > > >
> > > > Hi Greg. Our developer suspects it may be a mismatched
> > compiler/library
> > > > version. Was BUFRLIB installed with the same compiler as
MET?
> > > > Also,
> > > what
> > > > version of BURRLIB are you using?
> > > >
> > > > Thanks,
> > > > Julie
> > > >
> > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > <jpresto at ucar.edu>
> > > > wrote:
> > > >
> > > > > Hi Greg. I am checking in with another developer regarding
the
> > > > > error
> > > you
> > > > > experienced. Thank you for your patience.
> > > > >
> > > > > Julie
> > > > >
> > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
Contractor,
> > > > > Code
> > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > >
> > > > >>
> > > > >> <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > >> >
> > > > >>
> > > > >> I was able to build on Red Hat using:
> > > > >>
> > > > >> [ramos at lorenz ~]$ gcc --version
> > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > >> This is free software; see the source for copying
conditions.
> > > > >> There
> > > is
> > > > NO
> > > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > >> PARTICULAR
> > > > >> PURPOSE.
> > > > >>
> > > > >> [ramos at lorenz ~]$
> > > > >>
> > > > >> Not all of the tests passed, please see attachment.
> > > > >>
> > > > >> Greg
> > > > >>
> > > > >> -----Original Message-----
> > > > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > >> Julie
> > > > >> Prestopnik
> > > > >>
> > > > >> Thank you for letting me know. I will proceed with trying
to
> > > reproduce
> > > > >> the
> > > > >> problem using the gcc-6.3.0. I will follow up once I have
> > > > >> more
> > > > >> information.
> > > > >>
> > > > >> Julie
> > > > >>
> > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
Contractor,
> > > > >> Code
> > > > 7501.1
> > > > >> via RT <met_help at ucar.edu> wrote:
> > > > >>
> > > > >> >
> > > > >> > <URL:
> > > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > > >> >
> > > > >> > When I compiled MET 8.0 the last time, it worked. I was
also
> > > > >> > able
> > to
> > > > >> > compile 8.0 on out Cray:
> > > > >> >
> > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > >> > Password:
> > > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > > >> >
> > > > >> > *** Welcome to Cray eLogin Server ***
> > > > >> > Running 132MB Suse 12.3
> > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > >> >
> > > > >> > You are accessing a U.S. Government (USG) Information
System
> > > > >> > (IS)
> > > that
> > > > >> is
> > > > >> > provided for USG-authorized use only.
> > > > >> > By using this IS (which includes any device attached to
this
> > > > >> > IS),
> > > you
> > > > >> > consent to the following conditions:
> > > > >> > -The USG routinely intercepts and monitors communications
on
> > > > >> > this
> > IS
> > > > for
> > > > >> > purposes including, but not limited to,
> > > > >> > penetration testing, COMSEC monitoring, network
operations
> > > > >> > and
> > > > defense,
> > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > >> > and counterintelligence (CI) investigations.
> > > > >> > -At any time, the USG may inspect and seize data stored
on
> > > > >> > this
> > IS.
> > > > >> > -Communications using, or data stored on, this IS are not
> > > > >> > private,
> > > are
> > > > >> > subject to routine monitoring, interception,
> > > > >> > and search, and may be disclosed or used for any USG-
> > > > >> > authorized
> > > > purpose.
> > > > >> > -This IS includes security measures (e.g., authentication
> > > > >> > and
> > access
> > > > >> > controls) to protect USG interests -- not for
> > > > >> > your personal benefit or privacy.
> > > > >> > -Notwithstanding the above, using this IS does not
> > > > >> > constitute
> > > consent
> > > > to
> > > > >> > PM, LE or CI investigative searching or
> > > > >> > monitoring of the content of privileged communications,
or
> > > > >> > work
> > > > product,
> > > > >> > related to personal representation or
> > > > >> > services by attorneys, psychotherapists, or clergy, and
> > > > >> > their
> > > > >> assistants.
> > > > >> > Such communications and work product are
> > > > >> > private and confidential. See User Agreement for details.
> > > > >> >
> > > > >> > ramos at leo1:~> which gcc
> > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > >> > ramos at leo1:~>
> > > > >> >
> > > > >> > -----Original Message-----
> > > > >> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > Julie
> > > > >> > Prestopnik
> > > > >> >
> > > > >> > Hi Gregory. I have not tested with version 6.3.0 of the
gcc
> > > compiler,
> > > > >> but
> > > > >> > rather only with lower versions (specifically 4.8.5). We
> > > > >> > would,
> > of
> > > > >> course,
> > > > >> > want our code to work with higher versions as well. I
have
> > > > >> > not
> > yet
> > > > had
> > > > >> an
> > > > >> > opportunity to test with a higher version like 6.3.0. Do
> > > > >> > you have
> > > the
> > > > >> > ability to compile MET using a lesser version of the gcc
> > > > >> > compiler
> > to
> > > > >> see if
> > > > >> > that clears up the issues you are experiencing?
> > > > >> >
> > > > >> > Julie
> > > > >> >
> > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
> > > > >> > Contractor,
> > Code
> > > > >> 7501.1
> > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > >> >
> > > > >> > >
> > > > >> > > <URL:
> > > > >> > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > > >> > >
> > > > >> > > Any updates or suggestions?
> > > > >> > >
> > > > >> > > Greg
> > > > >> > >
> > > > >> > > -----Original Message-----
> > > > >> > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > >> > > 8.1
> > > Julie
> > > > >> > > Prestopnik
> > > > >> > >
> > > > >> > > Hi Greg. Thank you for passing along your config.log
> > > > >> > > file. I
> > > see a
> > > > >> > couple
> > > > >> > > of linker problems in there:
> > > > >> > >
> > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > >> > >
> > > > >> > > /usr/bin/ld: cannot find -ll
> > > > >> > >
> > > > >> > > Based on those errors, it looks like you may not have
flex
> > > > >> > > and
> > > bison
> > > > >> > > installed. Please install those and try running
configure
> > again.
> > > > >> Please
> > > > >> > > let us know how it goes.
> > > > >> > >
> > > > >> > > Also, I just wanted to address one other thing. In
your
> > original
> > > > >> email
> > > > >> > you
> > > > >> > > listed the following as part of your "MET Configuration
> > settings":
> > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl -lutil
-lm
> > > -Xlinker
> > > > >> > > -export-dynamic
> > > > >> > >
> > > > >> > > However, in your config.log file it looks like
> > > > >> > > MET_PYTHON_LD was
> > > > >> actually
> > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
> > > > >> > > -lpython2.7
> > > > -lpthread
> > > > >> > -ldl
> > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is correct
> > > > >> > > because
> > you
> > > > >> need
> > > > >> > to
> > > > >> > > have that -L part in there, so I just want to ensure
that
> > > > >> > > will
> > > stay
> > > > >> there
> > > > >> > > when you run configure again.
> > > > >> > >
> > > > >> > > Thanks,
> > > > >> > > Julie
> > > > >> > >
> > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
> > > > >> > > Contractor,
> > > Code
> > > > >> > 7501.1
> > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > >> > >
> > > > >> > > >
> > > > >> > > > <URL:
> > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > >
> > > > >> > > >
> > > > >> > > > Configure.log has no meaningful info:
> > > > >> > > >
> > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > >> > > > -bash: [ramos at predict: command not found
> > > > >> > > > [ramos at predict met-8.1]$
> > > > >> > > >
> > > > >> > > >
> > > > >> > > > -----Original Message-----
> > > > >> > > > From: John Halley Gotway via RT
> > > > >> > > > [mailto:met_help at ucar.edu]
> > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > >> > > > 8.1
> > > > Julie
> > > > >> > > > Prestopnik
> > > > >> > > >
> > > > >> > > > Hi Greg,
> > > > >> > > >
> > > > >> > > > I'll go ahead and assign this ticket to Julie, and
she
> > > > >> > > > should
> > be
> > > > >> > writing
> > > > >> > > > you back in the next couple of days.
> > > > >> > > >
> > > > >> > > > I do know she'll want to see both the "configure.log"
> > > > >> > > > file you
> > > > >> > generated
> > > > >> > > as
> > > > >> > > > well as the "config.log" file from that same
directory.
> > > > >> > > > So
> > > please
> > > > >> send
> > > > >> > > > those along when you get a chance.
> > > > >> > > >
> > > > >> > > > Thanks,
> > > > >> > > > John
> > > > >> > > >
> > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
> > > > >> > > > Contractor,
> > > > Code
> > > > >> > > 7501.1
> > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > >> > > >
> > > > >> > > > >
> > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted
> > > > >> > > > > upon.
> > > > >> > > > > Transaction: Ticket created by
> > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > >> > > > > Queue: met_help
> > > > >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > > >> > > > > Owner: Nobody
> > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > >> > > > > Status: new
> > > > >> > > > > Ticket <URL:
> > > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > >> > > >
> > > > >> > > > >
> > > > >> > > > >
> > > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
> > > > >> > > > > Anaconda
> > > 2.4.0.
> > > > >> The
> > > > >> > > user
> > > > >> > > > > asked for 8.1. I took notes last time, but running
> > > > >> > > > > into
> > > > problems:
> > > > >> > > > >
> > > > >> > > > > MET Configuration settings...
> > > > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > > >> > > > > export
> > > > >> > > > >
> > > > >> >
> > > > MET_FREETYPEINC=/software/depot/met-
> > > > 8.1/external_libs/include/freetype2
> > > > >> > > > > export
> > > > >> > MET_CAIROINC=/software/depot/met-
> > > > >> > 8.1/external_libs/include/cairo
> > > > >> > > > > export MET_GSL=/software/depot/met-
8.1/external_libs
> > > > >> > > > > export
> > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > >> > 2.4.0/include/python2.7
> > > > >> > > > > -I/software/depot/anaconda-2.4.0/include/python2.7
> > > > >> > -fno-strict-aliasing
> > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-
> > > > >> > > > > prototypes
> > > > >> > > > > export MET_HDF=/software/depot/met-
8.1/external_libs
> > > > >> > > > > export
> > > > >> > > > >
> > > > >> > > >
> > > > >> > >
> > > > >> >
> > > > >>
> > > >
> > >
> > MET_TARBALL=/software/depot/met-8.1/tar_files//software/depot/met-
> > 8.1/tar_files.tar
> > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > >> > > > > 8.1/external_libs
> > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > >> > > > > 8.1/external_libs
> > > > >> > > > > export
> > > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > > >> > > > > export
> > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil
> > > > >> > > > > -lm
> > > > >> -Xlinker
> > > > >> > > > > -export-dynamic
> > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > >> > > > > 8.1/external_libs
> > > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > >> > > > > 8.1/external_libs/lib
> > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-
8.1
> > > > >> --enable-grib2
> > > > >> > > > > --enable-modis --enable-mode_graphics --enable-
> > > > >> > > > > lidar2nc >
> > > > >> > > configure.log
> > > > >> > > > > 2> &1
> > > > >> > > > > configure returned with non-zero (127) status
> > > > >> > > > >
> > > > >> > > > >
> > > > >> > > >
> > > > >> > > >
> > > > >> > > >
> > > > >> > >
> > > > >> > >
> > > > >> > >
> > > > >> > >
> > > > >> >
> > > > >> >
> > > > >> >
> > > > >> >
> > > > >>
> > > > >>
> > > > >>
> > > >
> > > >
> > > >
> > > >
> > >
> > >
> > >
> >
> >
> >
> >
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Howard Soh
Time: Thu May 16 14:34:59 2019
MET is expecting "libpython2.7.so" to enable python support.
A log message shows the python was not enabled. Is python supporting
is critical?
./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-grib2
--enable-modis --enable-mode_graphics --enable-lidar2nc >
configure.log 2>&1
If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
1. Make sure python is not enabled
no "--enable-python" option for ./configure
2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
3. Remove "/software/depot/anaconda-2.4.0/lib" from LD_LIBRARY_PATH
at the build time and runtime both.
Cheers,
Howard
On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> I was able to compile Met 8.0 on our Cray with:
>
> ramos at leo1:~> gcc --version
> gcc (GCC) 7.3.0 20180125 (Cray Inc.)
> Copyright (C) 2017 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions. There
> is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> PURPOSE.
>
> ramos at leo1:~> gfortran --version
> GNU Fortran (GCC) 7.3.0 20180125 (Cray Inc.)
> Copyright (C) 2017 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions. There
> is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> PURPOSE.
>
> ramos at leo1:~>
>
> We don't have that version on our Red Hat systems. Met 8.0 worked on
> RH, but 8.1 failed on the 'make test'. The user says she is fine
with
> the executables so far. I will have to build a gfortran 7.x version.
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 16, 2019 1:11 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hello,
>
> Is gcc/gfortran 7.x compiler available?
>
> The problem was caused by the path for python library
> (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4 exists there
> from the ldd output. It was used on building MET. MET was compiled
> with gcc 4.4.7 which supports only libgfortran.so.3, and linked with
> libgfortran.so.4 because of MET_PYTHON_LD configuration. Some
> libraries do not support the backward compatibility. libgfortran.so
is
> one of them. In this case, the compiler version and library version
> should match.
>
> [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-8.1/bin/pb2nc
|grep
> gfortran
> libgfortran.so.4 => /software/depot/anaconda-
> 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
>
> export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-dynamic
>
> The solution is compiling third party libraries and MET with version
> 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
libgfortran.so.5,
> So the same problem will happen if MET is built with gcc/gfortran
6.x
> or gcc/gfortran 8.x.
>
> Cheers,
> Howard
>
> On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > Attached is the config.log for NetCDf it shows /usr/bin/gcc
> >
> > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat version.
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 4:44 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Thank you. Unfortunately, that does not tell me if the libraries
and
> > the
> > MET code were built with the same version of the compiler. I also
do
> > not
> > see bufrlib in that list.
> >
> > Can you please tell me - were the libraries and the MET code built
> > with the
> > same version of the compiler? I'm checking to see if, for
example,
> > the
> > libraries were built with gcc-6.3.0 but the MET code was build
with
> > gcc-4.4.7.
> >
> > Thanks!
> >
> > Julie
> >
> > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >
> > > You can see I am using those libraries for MET 8.1:
> > >
> > > [root at maury2 bin]# ldd modis_regrid
> > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > libpython2.7.so.1.0 =>
> > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > (0x00002ab75e1f3000)
> > > libpthread.so.0 => /lib64/libpthread.so.0
> > > (0x00002ab75e63b000)
> > > libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> > > libutil.so.1 => /lib64/libutil.so.1 (0x00002ab75ea5c000)
> > > libpng16.so.16 =>
> > > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > > (0x00002ab75ec60000)
> > > libz.so.1 => /software/depot/met-
> > > 8.1/external_libs/lib/libz.so.1
> > > (0x00002ab75ee92000)
> > > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > > libnetcdf_c++4.so.1 =>
> > > /software/depot/met-8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > (0x00002ab75f32f000)
> > > libnetcdf.so.11 =>
> > > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > > (0x00002ab75f57c000)
> > > libgsl.so.19 =>
> > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > (0x00002ab75f8bb000)
> > > libgslcblas.so.0 =>
> > > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > > (0x00002ab75fcfe000)
> > > libjpeg.so.9 => /software/depot/anaconda-
> > > 2.4.0/lib/libjpeg.so.9
> > > (0x00002ab75ff37000)
> > > libstdc++.so.6 =>
> > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > (0x00002ab760189000)
> > > libgcc_s.so.1 => /software/depot/anaconda-
> > > 2.4.0/lib/libgcc_s.so.1
> > > (0x00002ab7602cb000)
> > > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > > libhdf5_hl.so.10 =>
> > > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > > (0x00002ab760675000)
> > > libhdf5.so.10 =>
> > > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > > (0x00002ab760894000)
> > > librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> > > [root at maury2 bin]#
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 4:26 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Thank you, Greg. Can you please tell me - were the libraries
and
> > > the
> > > MET
> > > code built with the same version of the compiler. I'm checking
to
> > > see if,
> > > for example, the libraries were built with gcc-6.3.0 but the MET
> > > code
> > > was
> > > build with gcc-4.4.7.
> > >
> > > It sounds like we need the libraries and the MET code to be
built
> > > with the
> > > same version of the compiler, in this case.
> > >
> > > Thanks for any information you can provide.
> > >
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor,
> > > Code
> > > 7501.1
> > > via RT <met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >
> > > > Find the logs attached.
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > Julie
> > > > Prestopnik
> > > >
> > > > Could you please run the following:
> > > >
> > > > which pb2nc
> > > > ldd <full path to pb2nc> | grep gfortran
> > > >
> > > > and send me the output?
> > > >
> > > > Please also send your config.log and make.log file.
> > > >
> > > > Thank you!
> > > >
> > > > Julie
> > > >
> > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
Contractor,
> > > > Code
> > > 7501.1
> > > > via RT <met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > > >
> > > > > I used the buildscript. It should build all of the external
> > > > > libraries,
> > > so
> > > > > I believe everything was built with the same compiler.
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > Julie
> > > > > Prestopnik
> > > > >
> > > > > Hi Greg. Our developer suspects it may be a mismatched
> > > compiler/library
> > > > > version. Was BUFRLIB installed with the same compiler as
MET?
> > > > > Also,
> > > > what
> > > > > version of BURRLIB are you using?
> > > > >
> > > > > Thanks,
> > > > > Julie
> > > > >
> > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > <jpresto at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > > Hi Greg. I am checking in with another developer
regarding
> > > > > > the
> > > > > > error
> > > > you
> > > > > > experienced. Thank you for your patience.
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
> > > > > > Contractor,
> > > > > > Code
> > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > >
> > > > > >>
> > > > > >> <URL:
> > > > > >> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >> >
> > > > > >>
> > > > > >> I was able to build on Red Hat using:
> > > > > >>
> > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > > >> This is free software; see the source for copying
> > > > > >> conditions.
> > > > > >> There
> > > > is
> > > > > NO
> > > > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > >> PARTICULAR
> > > > > >> PURPOSE.
> > > > > >>
> > > > > >> [ramos at lorenz ~]$
> > > > > >>
> > > > > >> Not all of the tests passed, please see attachment.
> > > > > >>
> > > > > >> Greg
> > > > > >>
> > > > > >> -----Original Message-----
> > > > > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > >> Julie
> > > > > >> Prestopnik
> > > > > >>
> > > > > >> Thank you for letting me know. I will proceed with
trying
> > > > > >> to
> > > > reproduce
> > > > > >> the
> > > > > >> problem using the gcc-6.3.0. I will follow up once I
have
> > > > > >> more
> > > > > >> information.
> > > > > >>
> > > > > >> Julie
> > > > > >>
> > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
> > > > > >> Contractor,
> > > > > >> Code
> > > > > 7501.1
> > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > >>
> > > > > >> >
> > > > > >> > <URL:
> > > > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > > > >> >
> > > > > >> > When I compiled MET 8.0 the last time, it worked. I was
> > > > > >> > also
> > > > > >> > able
> > > to
> > > > > >> > compile 8.0 on out Cray:
> > > > > >> >
> > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > >> > Password:
> > > > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > > > >> >
> > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > >> > Running 132MB Suse 12.3
> > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > >> >
> > > > > >> > You are accessing a U.S. Government (USG) Information
> > > > > >> > System
> > > > > >> > (IS)
> > > > that
> > > > > >> is
> > > > > >> > provided for USG-authorized use only.
> > > > > >> > By using this IS (which includes any device attached to
> > > > > >> > this
> > > > > >> > IS),
> > > > you
> > > > > >> > consent to the following conditions:
> > > > > >> > -The USG routinely intercepts and monitors
communications
> > > > > >> > on
> > > > > >> > this
> > > IS
> > > > > for
> > > > > >> > purposes including, but not limited to,
> > > > > >> > penetration testing, COMSEC monitoring, network
operations
> > > > > >> > and
> > > > > defense,
> > > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > > >> > and counterintelligence (CI) investigations.
> > > > > >> > -At any time, the USG may inspect and seize data stored
on
> > > > > >> > this
> > > IS.
> > > > > >> > -Communications using, or data stored on, this IS are
not
> > > > > >> > private,
> > > > are
> > > > > >> > subject to routine monitoring, interception,
> > > > > >> > and search, and may be disclosed or used for any USG-
> > > > > >> > authorized
> > > > > purpose.
> > > > > >> > -This IS includes security measures (e.g.,
authentication
> > > > > >> > and
> > > access
> > > > > >> > controls) to protect USG interests -- not for
> > > > > >> > your personal benefit or privacy.
> > > > > >> > -Notwithstanding the above, using this IS does not
> > > > > >> > constitute
> > > > consent
> > > > > to
> > > > > >> > PM, LE or CI investigative searching or
> > > > > >> > monitoring of the content of privileged communications,
or
> > > > > >> > work
> > > > > product,
> > > > > >> > related to personal representation or
> > > > > >> > services by attorneys, psychotherapists, or clergy, and
> > > > > >> > their
> > > > > >> assistants.
> > > > > >> > Such communications and work product are
> > > > > >> > private and confidential. See User Agreement for
details.
> > > > > >> >
> > > > > >> > ramos at leo1:~> which gcc
> > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > >> > ramos at leo1:~>
> > > > > >> >
> > > > > >> > -----Original Message-----
> > > > > >> > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > >> > 8.1
> > > Julie
> > > > > >> > Prestopnik
> > > > > >> >
> > > > > >> > Hi Gregory. I have not tested with version 6.3.0 of
the
> > > > > >> > gcc
> > > > compiler,
> > > > > >> but
> > > > > >> > rather only with lower versions (specifically 4.8.5).
We
> > > > > >> > would,
> > > of
> > > > > >> course,
> > > > > >> > want our code to work with higher versions as well. I
> > > > > >> > have
> > > > > >> > not
> > > yet
> > > > > had
> > > > > >> an
> > > > > >> > opportunity to test with a higher version like 6.3.0.
Do
> > > > > >> > you have
> > > > the
> > > > > >> > ability to compile MET using a lesser version of the
gcc
> > > > > >> > compiler
> > > to
> > > > > >> see if
> > > > > >> > that clears up the issues you are experiencing?
> > > > > >> >
> > > > > >> > Julie
> > > > > >> >
> > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
> > > > > >> > Contractor,
> > > Code
> > > > > >> 7501.1
> > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > >> >
> > > > > >> > >
> > > > > >> > > <URL:
> > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >> > > >
> > > > > >> > >
> > > > > >> > > Any updates or suggestions?
> > > > > >> > >
> > > > > >> > > Greg
> > > > > >> > >
> > > > > >> > > -----Original Message-----
> > > > > >> > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > >> > > 8.1
> > > > Julie
> > > > > >> > > Prestopnik
> > > > > >> > >
> > > > > >> > > Hi Greg. Thank you for passing along your config.log
> > > > > >> > > file. I
> > > > see a
> > > > > >> > couple
> > > > > >> > > of linker problems in there:
> > > > > >> > >
> > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > >> > >
> > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > >> > >
> > > > > >> > > Based on those errors, it looks like you may not have
> > > > > >> > > flex
> > > > > >> > > and
> > > > bison
> > > > > >> > > installed. Please install those and try running
> > > > > >> > > configure
> > > again.
> > > > > >> Please
> > > > > >> > > let us know how it goes.
> > > > > >> > >
> > > > > >> > > Also, I just wanted to address one other thing. In
your
> > > original
> > > > > >> email
> > > > > >> > you
> > > > > >> > > listed the following as part of your "MET
Configuration
> > > settings":
> > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil
> > > > > >> > > -lm
> > > > -Xlinker
> > > > > >> > > -export-dynamic
> > > > > >> > >
> > > > > >> > > However, in your config.log file it looks like
> > > > > >> > > MET_PYTHON_LD was
> > > > > >> actually
> > > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
> > > > > >> > > -lpython2.7
> > > > > -lpthread
> > > > > >> > -ldl
> > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is
correct
> > > > > >> > > because
> > > you
> > > > > >> need
> > > > > >> > to
> > > > > >> > > have that -L part in there, so I just want to ensure
> > > > > >> > > that
> > > > > >> > > will
> > > > stay
> > > > > >> there
> > > > > >> > > when you run configure again.
> > > > > >> > >
> > > > > >> > > Thanks,
> > > > > >> > > Julie
> > > > > >> > >
> > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
> > > > > >> > > Contractor,
> > > > Code
> > > > > >> > 7501.1
> > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > >> > >
> > > > > >> > > >
> > > > > >> > > > <URL:
> > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > >
> > > > > >> > > >
> > > > > >> > > > Configure.log has no meaningful info:
> > > > > >> > > >
> > > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > >> > > > [ramos at predict met-8.1]$
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > > > -----Original Message-----
> > > > > >> > > > From: John Halley Gotway via RT
> > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > >> > > > MET
> > > > > >> > > > 8.1
> > > > > Julie
> > > > > >> > > > Prestopnik
> > > > > >> > > >
> > > > > >> > > > Hi Greg,
> > > > > >> > > >
> > > > > >> > > > I'll go ahead and assign this ticket to Julie, and
she
> > > > > >> > > > should
> > > be
> > > > > >> > writing
> > > > > >> > > > you back in the next couple of days.
> > > > > >> > > >
> > > > > >> > > > I do know she'll want to see both the
"configure.log"
> > > > > >> > > > file you
> > > > > >> > generated
> > > > > >> > > as
> > > > > >> > > > well as the "config.log" file from that same
> > > > > >> > > > directory.
> > > > > >> > > > So
> > > > please
> > > > > >> send
> > > > > >> > > > those along when you get a chance.
> > > > > >> > > >
> > > > > >> > > > Thanks,
> > > > > >> > > > John
> > > > > >> > > >
> > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
> > > > > >> > > > Contractor,
> > > > > Code
> > > > > >> > > 7501.1
> > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > >> > > >
> > > > > >> > > > >
> > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted
> > > > > >> > > > > upon.
> > > > > >> > > > > Transaction: Ticket created by
> > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > >> > > > > Queue: met_help
> > > > > >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > > > >> > > > > Owner: Nobody
> > > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > >> > > > > Status: new
> > > > > >> > > > > Ticket <URL:
> > > > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >> > > >
> > > > > >> > > > >
> > > > > >> > > > >
> > > > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
> > > > > >> > > > > Anaconda
> > > > 2.4.0.
> > > > > >> The
> > > > > >> > > user
> > > > > >> > > > > asked for 8.1. I took notes last time, but
running
> > > > > >> > > > > into
> > > > > problems:
> > > > > >> > > > >
> > > > > >> > > > > MET Configuration settings...
> > > > > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > > > >> > > > > export
> > > > > >> > > > >
> > > > > >> >
> > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > 8.1/external_libs/include/freetype2
> > > > > >> > > > > export
> > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > >> > 8.1/external_libs/include/cairo
> > > > > >> > > > > export MET_GSL=/software/depot/met-
8.1/external_libs
> > > > > >> > > > > export
> > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > >> > 2.4.0/include/python2.7
> > > > > >> > > > > -I/software/depot/anaconda-
2.4.0/include/python2.7
> > > > > >> > -fno-strict-aliasing
> > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
-Wstrict-
> > > > > >> > > > > prototypes
> > > > > >> > > > > export MET_HDF=/software/depot/met-
8.1/external_libs
> > > > > >> > > > > export
> > > > > >> > > > >
> > > > > >> > > >
> > > > > >> > >
> > > > > >> >
> > > > > >>
> > > > >
> > > >
> > > MET_TARBALL=/software/depot/met-
8.1/tar_files//software/depot/met-
> > > 8.1/tar_files.tar
> > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs
> > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs
> > > > > >> > > > > export
> > > > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > > > >> > > > > export
> > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
> > > > > >> > > > > -lutil
> > > > > >> > > > > -lm
> > > > > >> -Xlinker
> > > > > >> > > > > -export-dynamic
> > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs
> > > > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs/lib
> > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-
8.1
> > > > > >> --enable-grib2
> > > > > >> > > > > --enable-modis --enable-mode_graphics --enable-
> > > > > >> > > > > lidar2nc >
> > > > > >> > > configure.log
> > > > > >> > > > > 2> &1
> > > > > >> > > > > configure returned with non-zero (127) status
> > > > > >> > > > >
> > > > > >> > > > >
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > >
> > > > > >> > >
> > > > > >> > >
> > > > > >> > >
> > > > > >> >
> > > > > >> >
> > > > > >> >
> > > > > >> >
> > > > > >>
> > > > > >>
> > > > > >>
> > > > >
> > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > >
> > >
> > >
> > >
> > >
> >
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Thu May 16 15:20:06 2019
Yes, Python support was requested. Here are the exports I used:
export TEST_BASE=/software/depot/met-8.1
export COMPILER=gnu
export MET_SUBDIR=/software/depot/met-8.1/met-8.1
export MET_TARBALL=/software/depot/met-8.1/tar_files.tar
export PATH=/software/depot/met-8.1/external_libs/bin:$PATH
export LD_LIBRARY_PATH=/software/depot/met-
8.1/external_libs/lib:$LD_LIBRARY_PATH
export PKG_CONFIG_PATH=/software/depot/met-
8.1/external_libs/lib/pkgconfig
export MET_PYTHON_CC=`/software/depot/anaconda-2.4.0/bin/python-config
--cflags`
export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
-lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-dynamic
export LD_LIBRARY_PATH=/software/depot/anaconda-
2.4.0/lib:${LD_LIBRARY_PATH}
export PYTHON_MODULE_USE=/software/Modules/modulefiles
export LD_LIBRARY_PATH=/software/depot/anaconda-
2.4.0/lib:$LD_LIBRARY_PATH
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Thursday, May 16, 2019 1:35 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
MET is expecting "libpython2.7.so" to enable python support.
A log message shows the python was not enabled. Is python supporting
is critical?
./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-grib2
--enable-modis --enable-mode_graphics --enable-lidar2nc >
configure.log 2>&1
If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
1. Make sure python is not enabled
no "--enable-python" option for ./configure
2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
3. Remove "/software/depot/anaconda-2.4.0/lib" from LD_LIBRARY_PATH
at the build time and runtime both.
Cheers,
Howard
On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> I was able to compile Met 8.0 on our Cray with:
>
> ramos at leo1:~> gcc --version
> gcc (GCC) 7.3.0 20180125 (Cray Inc.)
> Copyright (C) 2017 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions. There
> is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> PURPOSE.
>
> ramos at leo1:~> gfortran --version
> GNU Fortran (GCC) 7.3.0 20180125 (Cray Inc.)
> Copyright (C) 2017 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions. There
> is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> PURPOSE.
>
> ramos at leo1:~>
>
> We don't have that version on our Red Hat systems. Met 8.0 worked on
> RH, but 8.1 failed on the 'make test'. The user says she is fine
with
> the executables so far. I will have to build a gfortran 7.x version.
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 16, 2019 1:11 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hello,
>
> Is gcc/gfortran 7.x compiler available?
>
> The problem was caused by the path for python library
> (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4 exists there
> from the ldd output. It was used on building MET. MET was compiled
> with gcc 4.4.7 which supports only libgfortran.so.3, and linked with
> libgfortran.so.4 because of MET_PYTHON_LD configuration. Some
> libraries do not support the backward compatibility. libgfortran.so
is
> one of them. In this case, the compiler version and library version
> should match.
>
> [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-8.1/bin/pb2nc
|grep
> gfortran
> libgfortran.so.4 => /software/depot/anaconda-
> 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
>
> export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-dynamic
>
> The solution is compiling third party libraries and MET with version
> 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
libgfortran.so.5,
> So the same problem will happen if MET is built with gcc/gfortran
6.x
> or gcc/gfortran 8.x.
>
> Cheers,
> Howard
>
> On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > Attached is the config.log for NetCDf it shows /usr/bin/gcc
> >
> > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat version.
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 4:44 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Thank you. Unfortunately, that does not tell me if the libraries
and
> > the
> > MET code were built with the same version of the compiler. I also
do
> > not
> > see bufrlib in that list.
> >
> > Can you please tell me - were the libraries and the MET code built
> > with the
> > same version of the compiler? I'm checking to see if, for
example,
> > the
> > libraries were built with gcc-6.3.0 but the MET code was build
with
> > gcc-4.4.7.
> >
> > Thanks!
> >
> > Julie
> >
> > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >
> > > You can see I am using those libraries for MET 8.1:
> > >
> > > [root at maury2 bin]# ldd modis_regrid
> > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > libpython2.7.so.1.0 =>
> > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > (0x00002ab75e1f3000)
> > > libpthread.so.0 => /lib64/libpthread.so.0
> > > (0x00002ab75e63b000)
> > > libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> > > libutil.so.1 => /lib64/libutil.so.1 (0x00002ab75ea5c000)
> > > libpng16.so.16 =>
> > > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > > (0x00002ab75ec60000)
> > > libz.so.1 => /software/depot/met-
> > > 8.1/external_libs/lib/libz.so.1
> > > (0x00002ab75ee92000)
> > > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > > libnetcdf_c++4.so.1 =>
> > > /software/depot/met-8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > (0x00002ab75f32f000)
> > > libnetcdf.so.11 =>
> > > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > > (0x00002ab75f57c000)
> > > libgsl.so.19 =>
> > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > (0x00002ab75f8bb000)
> > > libgslcblas.so.0 =>
> > > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > > (0x00002ab75fcfe000)
> > > libjpeg.so.9 => /software/depot/anaconda-
> > > 2.4.0/lib/libjpeg.so.9
> > > (0x00002ab75ff37000)
> > > libstdc++.so.6 =>
> > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > (0x00002ab760189000)
> > > libgcc_s.so.1 => /software/depot/anaconda-
> > > 2.4.0/lib/libgcc_s.so.1
> > > (0x00002ab7602cb000)
> > > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > > libhdf5_hl.so.10 =>
> > > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > > (0x00002ab760675000)
> > > libhdf5.so.10 =>
> > > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > > (0x00002ab760894000)
> > > librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> > > [root at maury2 bin]#
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 4:26 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Thank you, Greg. Can you please tell me - were the libraries
and
> > > the
> > > MET
> > > code built with the same version of the compiler. I'm checking
to
> > > see if,
> > > for example, the libraries were built with gcc-6.3.0 but the MET
> > > code
> > > was
> > > build with gcc-4.4.7.
> > >
> > > It sounds like we need the libraries and the MET code to be
built
> > > with the
> > > same version of the compiler, in this case.
> > >
> > > Thanks for any information you can provide.
> > >
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor,
> > > Code
> > > 7501.1
> > > via RT <met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >
> > > > Find the logs attached.
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > Julie
> > > > Prestopnik
> > > >
> > > > Could you please run the following:
> > > >
> > > > which pb2nc
> > > > ldd <full path to pb2nc> | grep gfortran
> > > >
> > > > and send me the output?
> > > >
> > > > Please also send your config.log and make.log file.
> > > >
> > > > Thank you!
> > > >
> > > > Julie
> > > >
> > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
Contractor,
> > > > Code
> > > 7501.1
> > > > via RT <met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > > >
> > > > > I used the buildscript. It should build all of the external
> > > > > libraries,
> > > so
> > > > > I believe everything was built with the same compiler.
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > Julie
> > > > > Prestopnik
> > > > >
> > > > > Hi Greg. Our developer suspects it may be a mismatched
> > > compiler/library
> > > > > version. Was BUFRLIB installed with the same compiler as
MET?
> > > > > Also,
> > > > what
> > > > > version of BURRLIB are you using?
> > > > >
> > > > > Thanks,
> > > > > Julie
> > > > >
> > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > <jpresto at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > > Hi Greg. I am checking in with another developer
regarding
> > > > > > the
> > > > > > error
> > > > you
> > > > > > experienced. Thank you for your patience.
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
> > > > > > Contractor,
> > > > > > Code
> > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > >
> > > > > >>
> > > > > >> <URL:
> > > > > >> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >> >
> > > > > >>
> > > > > >> I was able to build on Red Hat using:
> > > > > >>
> > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > > >> This is free software; see the source for copying
> > > > > >> conditions.
> > > > > >> There
> > > > is
> > > > > NO
> > > > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > >> PARTICULAR
> > > > > >> PURPOSE.
> > > > > >>
> > > > > >> [ramos at lorenz ~]$
> > > > > >>
> > > > > >> Not all of the tests passed, please see attachment.
> > > > > >>
> > > > > >> Greg
> > > > > >>
> > > > > >> -----Original Message-----
> > > > > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > >> Julie
> > > > > >> Prestopnik
> > > > > >>
> > > > > >> Thank you for letting me know. I will proceed with
trying
> > > > > >> to
> > > > reproduce
> > > > > >> the
> > > > > >> problem using the gcc-6.3.0. I will follow up once I
have
> > > > > >> more
> > > > > >> information.
> > > > > >>
> > > > > >> Julie
> > > > > >>
> > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
> > > > > >> Contractor,
> > > > > >> Code
> > > > > 7501.1
> > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > >>
> > > > > >> >
> > > > > >> > <URL:
> > > > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > > > >> >
> > > > > >> > When I compiled MET 8.0 the last time, it worked. I was
> > > > > >> > also
> > > > > >> > able
> > > to
> > > > > >> > compile 8.0 on out Cray:
> > > > > >> >
> > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > >> > Password:
> > > > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > > > >> >
> > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > >> > Running 132MB Suse 12.3
> > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > >> >
> > > > > >> > You are accessing a U.S. Government (USG) Information
> > > > > >> > System
> > > > > >> > (IS)
> > > > that
> > > > > >> is
> > > > > >> > provided for USG-authorized use only.
> > > > > >> > By using this IS (which includes any device attached to
> > > > > >> > this
> > > > > >> > IS),
> > > > you
> > > > > >> > consent to the following conditions:
> > > > > >> > -The USG routinely intercepts and monitors
communications
> > > > > >> > on
> > > > > >> > this
> > > IS
> > > > > for
> > > > > >> > purposes including, but not limited to,
> > > > > >> > penetration testing, COMSEC monitoring, network
operations
> > > > > >> > and
> > > > > defense,
> > > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > > >> > and counterintelligence (CI) investigations.
> > > > > >> > -At any time, the USG may inspect and seize data stored
on
> > > > > >> > this
> > > IS.
> > > > > >> > -Communications using, or data stored on, this IS are
not
> > > > > >> > private,
> > > > are
> > > > > >> > subject to routine monitoring, interception,
> > > > > >> > and search, and may be disclosed or used for any USG-
> > > > > >> > authorized
> > > > > purpose.
> > > > > >> > -This IS includes security measures (e.g.,
authentication
> > > > > >> > and
> > > access
> > > > > >> > controls) to protect USG interests -- not for
> > > > > >> > your personal benefit or privacy.
> > > > > >> > -Notwithstanding the above, using this IS does not
> > > > > >> > constitute
> > > > consent
> > > > > to
> > > > > >> > PM, LE or CI investigative searching or
> > > > > >> > monitoring of the content of privileged communications,
or
> > > > > >> > work
> > > > > product,
> > > > > >> > related to personal representation or
> > > > > >> > services by attorneys, psychotherapists, or clergy, and
> > > > > >> > their
> > > > > >> assistants.
> > > > > >> > Such communications and work product are
> > > > > >> > private and confidential. See User Agreement for
details.
> > > > > >> >
> > > > > >> > ramos at leo1:~> which gcc
> > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > >> > ramos at leo1:~>
> > > > > >> >
> > > > > >> > -----Original Message-----
> > > > > >> > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > >> > 8.1
> > > Julie
> > > > > >> > Prestopnik
> > > > > >> >
> > > > > >> > Hi Gregory. I have not tested with version 6.3.0 of
the
> > > > > >> > gcc
> > > > compiler,
> > > > > >> but
> > > > > >> > rather only with lower versions (specifically 4.8.5).
We
> > > > > >> > would,
> > > of
> > > > > >> course,
> > > > > >> > want our code to work with higher versions as well. I
> > > > > >> > have
> > > > > >> > not
> > > yet
> > > > > had
> > > > > >> an
> > > > > >> > opportunity to test with a higher version like 6.3.0.
Do
> > > > > >> > you have
> > > > the
> > > > > >> > ability to compile MET using a lesser version of the
gcc
> > > > > >> > compiler
> > > to
> > > > > >> see if
> > > > > >> > that clears up the issues you are experiencing?
> > > > > >> >
> > > > > >> > Julie
> > > > > >> >
> > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
> > > > > >> > Contractor,
> > > Code
> > > > > >> 7501.1
> > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > >> >
> > > > > >> > >
> > > > > >> > > <URL:
> > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >> > > >
> > > > > >> > >
> > > > > >> > > Any updates or suggestions?
> > > > > >> > >
> > > > > >> > > Greg
> > > > > >> > >
> > > > > >> > > -----Original Message-----
> > > > > >> > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > >> > > 8.1
> > > > Julie
> > > > > >> > > Prestopnik
> > > > > >> > >
> > > > > >> > > Hi Greg. Thank you for passing along your config.log
> > > > > >> > > file. I
> > > > see a
> > > > > >> > couple
> > > > > >> > > of linker problems in there:
> > > > > >> > >
> > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > >> > >
> > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > >> > >
> > > > > >> > > Based on those errors, it looks like you may not have
> > > > > >> > > flex
> > > > > >> > > and
> > > > bison
> > > > > >> > > installed. Please install those and try running
> > > > > >> > > configure
> > > again.
> > > > > >> Please
> > > > > >> > > let us know how it goes.
> > > > > >> > >
> > > > > >> > > Also, I just wanted to address one other thing. In
your
> > > original
> > > > > >> email
> > > > > >> > you
> > > > > >> > > listed the following as part of your "MET
Configuration
> > > settings":
> > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil
> > > > > >> > > -lm
> > > > -Xlinker
> > > > > >> > > -export-dynamic
> > > > > >> > >
> > > > > >> > > However, in your config.log file it looks like
> > > > > >> > > MET_PYTHON_LD was
> > > > > >> actually
> > > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
> > > > > >> > > -lpython2.7
> > > > > -lpthread
> > > > > >> > -ldl
> > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is
correct
> > > > > >> > > because
> > > you
> > > > > >> need
> > > > > >> > to
> > > > > >> > > have that -L part in there, so I just want to ensure
> > > > > >> > > that
> > > > > >> > > will
> > > > stay
> > > > > >> there
> > > > > >> > > when you run configure again.
> > > > > >> > >
> > > > > >> > > Thanks,
> > > > > >> > > Julie
> > > > > >> > >
> > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
> > > > > >> > > Contractor,
> > > > Code
> > > > > >> > 7501.1
> > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > >> > >
> > > > > >> > > >
> > > > > >> > > > <URL:
> > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > >
> > > > > >> > > >
> > > > > >> > > > Configure.log has no meaningful info:
> > > > > >> > > >
> > > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > >> > > > [ramos at predict met-8.1]$
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > > > -----Original Message-----
> > > > > >> > > > From: John Halley Gotway via RT
> > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > >> > > > MET
> > > > > >> > > > 8.1
> > > > > Julie
> > > > > >> > > > Prestopnik
> > > > > >> > > >
> > > > > >> > > > Hi Greg,
> > > > > >> > > >
> > > > > >> > > > I'll go ahead and assign this ticket to Julie, and
she
> > > > > >> > > > should
> > > be
> > > > > >> > writing
> > > > > >> > > > you back in the next couple of days.
> > > > > >> > > >
> > > > > >> > > > I do know she'll want to see both the
"configure.log"
> > > > > >> > > > file you
> > > > > >> > generated
> > > > > >> > > as
> > > > > >> > > > well as the "config.log" file from that same
> > > > > >> > > > directory.
> > > > > >> > > > So
> > > > please
> > > > > >> send
> > > > > >> > > > those along when you get a chance.
> > > > > >> > > >
> > > > > >> > > > Thanks,
> > > > > >> > > > John
> > > > > >> > > >
> > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
> > > > > >> > > > Contractor,
> > > > > Code
> > > > > >> > > 7501.1
> > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > >> > > >
> > > > > >> > > > >
> > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted
> > > > > >> > > > > upon.
> > > > > >> > > > > Transaction: Ticket created by
> > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > >> > > > > Queue: met_help
> > > > > >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > > > >> > > > > Owner: Nobody
> > > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > >> > > > > Status: new
> > > > > >> > > > > Ticket <URL:
> > > > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >> > > >
> > > > > >> > > > >
> > > > > >> > > > >
> > > > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
> > > > > >> > > > > Anaconda
> > > > 2.4.0.
> > > > > >> The
> > > > > >> > > user
> > > > > >> > > > > asked for 8.1. I took notes last time, but
running
> > > > > >> > > > > into
> > > > > problems:
> > > > > >> > > > >
> > > > > >> > > > > MET Configuration settings...
> > > > > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > > > >> > > > > export
> > > > > >> > > > >
> > > > > >> >
> > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > 8.1/external_libs/include/freetype2
> > > > > >> > > > > export
> > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > >> > 8.1/external_libs/include/cairo
> > > > > >> > > > > export MET_GSL=/software/depot/met-
8.1/external_libs
> > > > > >> > > > > export
> > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > >> > 2.4.0/include/python2.7
> > > > > >> > > > > -I/software/depot/anaconda-
2.4.0/include/python2.7
> > > > > >> > -fno-strict-aliasing
> > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
-Wstrict-
> > > > > >> > > > > prototypes
> > > > > >> > > > > export MET_HDF=/software/depot/met-
8.1/external_libs
> > > > > >> > > > > export
> > > > > >> > > > >
> > > > > >> > > >
> > > > > >> > >
> > > > > >> >
> > > > > >>
> > > > >
> > > >
> > > MET_TARBALL=/software/depot/met-
8.1/tar_files//software/depot/met-
> > > 8.1/tar_files.tar
> > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs
> > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs
> > > > > >> > > > > export
> > > > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > > > >> > > > > export
> > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
> > > > > >> > > > > -lutil
> > > > > >> > > > > -lm
> > > > > >> -Xlinker
> > > > > >> > > > > -export-dynamic
> > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs
> > > > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs/lib
> > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-
8.1
> > > > > >> --enable-grib2
> > > > > >> > > > > --enable-modis --enable-mode_graphics --enable-
> > > > > >> > > > > lidar2nc >
> > > > > >> > > configure.log
> > > > > >> > > > > 2> &1
> > > > > >> > > > > configure returned with non-zero (127) status
> > > > > >> > > > >
> > > > > >> > > > >
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > >
> > > > > >> > >
> > > > > >> > >
> > > > > >> > >
> > > > > >> >
> > > > > >> >
> > > > > >> >
> > > > > >> >
> > > > > >>
> > > > > >>
> > > > > >>
> > > > >
> > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > >
> > >
> > >
> > >
> > >
> >
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Thu May 16 15:21:31 2019
This is my config.log:
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by MET configure 8.1, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2 --enable-modis --enable-mode_graphics --enable-lidar2nc
--enable-python
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Thursday, May 16, 2019 1:35 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
MET is expecting "libpython2.7.so" to enable python support.
A log message shows the python was not enabled. Is python supporting
is critical?
./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-grib2
--enable-modis --enable-mode_graphics --enable-lidar2nc >
configure.log 2>&1
If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
1. Make sure python is not enabled
no "--enable-python" option for ./configure
2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
3. Remove "/software/depot/anaconda-2.4.0/lib" from LD_LIBRARY_PATH
at the build time and runtime both.
Cheers,
Howard
On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> I was able to compile Met 8.0 on our Cray with:
>
> ramos at leo1:~> gcc --version
> gcc (GCC) 7.3.0 20180125 (Cray Inc.)
> Copyright (C) 2017 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions. There
> is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> PURPOSE.
>
> ramos at leo1:~> gfortran --version
> GNU Fortran (GCC) 7.3.0 20180125 (Cray Inc.)
> Copyright (C) 2017 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions. There
> is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> PURPOSE.
>
> ramos at leo1:~>
>
> We don't have that version on our Red Hat systems. Met 8.0 worked on
> RH, but 8.1 failed on the 'make test'. The user says she is fine
with
> the executables so far. I will have to build a gfortran 7.x version.
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 16, 2019 1:11 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hello,
>
> Is gcc/gfortran 7.x compiler available?
>
> The problem was caused by the path for python library
> (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4 exists there
> from the ldd output. It was used on building MET. MET was compiled
> with gcc 4.4.7 which supports only libgfortran.so.3, and linked with
> libgfortran.so.4 because of MET_PYTHON_LD configuration. Some
> libraries do not support the backward compatibility. libgfortran.so
is
> one of them. In this case, the compiler version and library version
> should match.
>
> [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-8.1/bin/pb2nc
|grep
> gfortran
> libgfortran.so.4 => /software/depot/anaconda-
> 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
>
> export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-dynamic
>
> The solution is compiling third party libraries and MET with version
> 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
libgfortran.so.5,
> So the same problem will happen if MET is built with gcc/gfortran
6.x
> or gcc/gfortran 8.x.
>
> Cheers,
> Howard
>
> On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > Attached is the config.log for NetCDf it shows /usr/bin/gcc
> >
> > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat version.
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 4:44 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Thank you. Unfortunately, that does not tell me if the libraries
and
> > the
> > MET code were built with the same version of the compiler. I also
do
> > not
> > see bufrlib in that list.
> >
> > Can you please tell me - were the libraries and the MET code built
> > with the
> > same version of the compiler? I'm checking to see if, for
example,
> > the
> > libraries were built with gcc-6.3.0 but the MET code was build
with
> > gcc-4.4.7.
> >
> > Thanks!
> >
> > Julie
> >
> > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >
> > > You can see I am using those libraries for MET 8.1:
> > >
> > > [root at maury2 bin]# ldd modis_regrid
> > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > libpython2.7.so.1.0 =>
> > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > (0x00002ab75e1f3000)
> > > libpthread.so.0 => /lib64/libpthread.so.0
> > > (0x00002ab75e63b000)
> > > libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> > > libutil.so.1 => /lib64/libutil.so.1 (0x00002ab75ea5c000)
> > > libpng16.so.16 =>
> > > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > > (0x00002ab75ec60000)
> > > libz.so.1 => /software/depot/met-
> > > 8.1/external_libs/lib/libz.so.1
> > > (0x00002ab75ee92000)
> > > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > > libnetcdf_c++4.so.1 =>
> > > /software/depot/met-8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > (0x00002ab75f32f000)
> > > libnetcdf.so.11 =>
> > > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > > (0x00002ab75f57c000)
> > > libgsl.so.19 =>
> > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > (0x00002ab75f8bb000)
> > > libgslcblas.so.0 =>
> > > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > > (0x00002ab75fcfe000)
> > > libjpeg.so.9 => /software/depot/anaconda-
> > > 2.4.0/lib/libjpeg.so.9
> > > (0x00002ab75ff37000)
> > > libstdc++.so.6 =>
> > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > (0x00002ab760189000)
> > > libgcc_s.so.1 => /software/depot/anaconda-
> > > 2.4.0/lib/libgcc_s.so.1
> > > (0x00002ab7602cb000)
> > > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > > libhdf5_hl.so.10 =>
> > > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > > (0x00002ab760675000)
> > > libhdf5.so.10 =>
> > > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > > (0x00002ab760894000)
> > > librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> > > [root at maury2 bin]#
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 4:26 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Thank you, Greg. Can you please tell me - were the libraries
and
> > > the
> > > MET
> > > code built with the same version of the compiler. I'm checking
to
> > > see if,
> > > for example, the libraries were built with gcc-6.3.0 but the MET
> > > code
> > > was
> > > build with gcc-4.4.7.
> > >
> > > It sounds like we need the libraries and the MET code to be
built
> > > with the
> > > same version of the compiler, in this case.
> > >
> > > Thanks for any information you can provide.
> > >
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor,
> > > Code
> > > 7501.1
> > > via RT <met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >
> > > > Find the logs attached.
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > Julie
> > > > Prestopnik
> > > >
> > > > Could you please run the following:
> > > >
> > > > which pb2nc
> > > > ldd <full path to pb2nc> | grep gfortran
> > > >
> > > > and send me the output?
> > > >
> > > > Please also send your config.log and make.log file.
> > > >
> > > > Thank you!
> > > >
> > > > Julie
> > > >
> > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
Contractor,
> > > > Code
> > > 7501.1
> > > > via RT <met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > > >
> > > > > I used the buildscript. It should build all of the external
> > > > > libraries,
> > > so
> > > > > I believe everything was built with the same compiler.
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > Julie
> > > > > Prestopnik
> > > > >
> > > > > Hi Greg. Our developer suspects it may be a mismatched
> > > compiler/library
> > > > > version. Was BUFRLIB installed with the same compiler as
MET?
> > > > > Also,
> > > > what
> > > > > version of BURRLIB are you using?
> > > > >
> > > > > Thanks,
> > > > > Julie
> > > > >
> > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > <jpresto at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > > Hi Greg. I am checking in with another developer
regarding
> > > > > > the
> > > > > > error
> > > > you
> > > > > > experienced. Thank you for your patience.
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
> > > > > > Contractor,
> > > > > > Code
> > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > >
> > > > > >>
> > > > > >> <URL:
> > > > > >> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >> >
> > > > > >>
> > > > > >> I was able to build on Red Hat using:
> > > > > >>
> > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > > >> This is free software; see the source for copying
> > > > > >> conditions.
> > > > > >> There
> > > > is
> > > > > NO
> > > > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > >> PARTICULAR
> > > > > >> PURPOSE.
> > > > > >>
> > > > > >> [ramos at lorenz ~]$
> > > > > >>
> > > > > >> Not all of the tests passed, please see attachment.
> > > > > >>
> > > > > >> Greg
> > > > > >>
> > > > > >> -----Original Message-----
> > > > > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > >> Julie
> > > > > >> Prestopnik
> > > > > >>
> > > > > >> Thank you for letting me know. I will proceed with
trying
> > > > > >> to
> > > > reproduce
> > > > > >> the
> > > > > >> problem using the gcc-6.3.0. I will follow up once I
have
> > > > > >> more
> > > > > >> information.
> > > > > >>
> > > > > >> Julie
> > > > > >>
> > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
> > > > > >> Contractor,
> > > > > >> Code
> > > > > 7501.1
> > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > >>
> > > > > >> >
> > > > > >> > <URL:
> > > > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > > > >> >
> > > > > >> > When I compiled MET 8.0 the last time, it worked. I was
> > > > > >> > also
> > > > > >> > able
> > > to
> > > > > >> > compile 8.0 on out Cray:
> > > > > >> >
> > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > >> > Password:
> > > > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > > > >> >
> > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > >> > Running 132MB Suse 12.3
> > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > >> >
> > > > > >> > You are accessing a U.S. Government (USG) Information
> > > > > >> > System
> > > > > >> > (IS)
> > > > that
> > > > > >> is
> > > > > >> > provided for USG-authorized use only.
> > > > > >> > By using this IS (which includes any device attached to
> > > > > >> > this
> > > > > >> > IS),
> > > > you
> > > > > >> > consent to the following conditions:
> > > > > >> > -The USG routinely intercepts and monitors
communications
> > > > > >> > on
> > > > > >> > this
> > > IS
> > > > > for
> > > > > >> > purposes including, but not limited to,
> > > > > >> > penetration testing, COMSEC monitoring, network
operations
> > > > > >> > and
> > > > > defense,
> > > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > > >> > and counterintelligence (CI) investigations.
> > > > > >> > -At any time, the USG may inspect and seize data stored
on
> > > > > >> > this
> > > IS.
> > > > > >> > -Communications using, or data stored on, this IS are
not
> > > > > >> > private,
> > > > are
> > > > > >> > subject to routine monitoring, interception,
> > > > > >> > and search, and may be disclosed or used for any USG-
> > > > > >> > authorized
> > > > > purpose.
> > > > > >> > -This IS includes security measures (e.g.,
authentication
> > > > > >> > and
> > > access
> > > > > >> > controls) to protect USG interests -- not for
> > > > > >> > your personal benefit or privacy.
> > > > > >> > -Notwithstanding the above, using this IS does not
> > > > > >> > constitute
> > > > consent
> > > > > to
> > > > > >> > PM, LE or CI investigative searching or
> > > > > >> > monitoring of the content of privileged communications,
or
> > > > > >> > work
> > > > > product,
> > > > > >> > related to personal representation or
> > > > > >> > services by attorneys, psychotherapists, or clergy, and
> > > > > >> > their
> > > > > >> assistants.
> > > > > >> > Such communications and work product are
> > > > > >> > private and confidential. See User Agreement for
details.
> > > > > >> >
> > > > > >> > ramos at leo1:~> which gcc
> > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > >> > ramos at leo1:~>
> > > > > >> >
> > > > > >> > -----Original Message-----
> > > > > >> > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > >> > 8.1
> > > Julie
> > > > > >> > Prestopnik
> > > > > >> >
> > > > > >> > Hi Gregory. I have not tested with version 6.3.0 of
the
> > > > > >> > gcc
> > > > compiler,
> > > > > >> but
> > > > > >> > rather only with lower versions (specifically 4.8.5).
We
> > > > > >> > would,
> > > of
> > > > > >> course,
> > > > > >> > want our code to work with higher versions as well. I
> > > > > >> > have
> > > > > >> > not
> > > yet
> > > > > had
> > > > > >> an
> > > > > >> > opportunity to test with a higher version like 6.3.0.
Do
> > > > > >> > you have
> > > > the
> > > > > >> > ability to compile MET using a lesser version of the
gcc
> > > > > >> > compiler
> > > to
> > > > > >> see if
> > > > > >> > that clears up the issues you are experiencing?
> > > > > >> >
> > > > > >> > Julie
> > > > > >> >
> > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
> > > > > >> > Contractor,
> > > Code
> > > > > >> 7501.1
> > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > >> >
> > > > > >> > >
> > > > > >> > > <URL:
> > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >> > > >
> > > > > >> > >
> > > > > >> > > Any updates or suggestions?
> > > > > >> > >
> > > > > >> > > Greg
> > > > > >> > >
> > > > > >> > > -----Original Message-----
> > > > > >> > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > >> > > 8.1
> > > > Julie
> > > > > >> > > Prestopnik
> > > > > >> > >
> > > > > >> > > Hi Greg. Thank you for passing along your config.log
> > > > > >> > > file. I
> > > > see a
> > > > > >> > couple
> > > > > >> > > of linker problems in there:
> > > > > >> > >
> > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > >> > >
> > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > >> > >
> > > > > >> > > Based on those errors, it looks like you may not have
> > > > > >> > > flex
> > > > > >> > > and
> > > > bison
> > > > > >> > > installed. Please install those and try running
> > > > > >> > > configure
> > > again.
> > > > > >> Please
> > > > > >> > > let us know how it goes.
> > > > > >> > >
> > > > > >> > > Also, I just wanted to address one other thing. In
your
> > > original
> > > > > >> email
> > > > > >> > you
> > > > > >> > > listed the following as part of your "MET
Configuration
> > > settings":
> > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil
> > > > > >> > > -lm
> > > > -Xlinker
> > > > > >> > > -export-dynamic
> > > > > >> > >
> > > > > >> > > However, in your config.log file it looks like
> > > > > >> > > MET_PYTHON_LD was
> > > > > >> actually
> > > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
> > > > > >> > > -lpython2.7
> > > > > -lpthread
> > > > > >> > -ldl
> > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is
correct
> > > > > >> > > because
> > > you
> > > > > >> need
> > > > > >> > to
> > > > > >> > > have that -L part in there, so I just want to ensure
> > > > > >> > > that
> > > > > >> > > will
> > > > stay
> > > > > >> there
> > > > > >> > > when you run configure again.
> > > > > >> > >
> > > > > >> > > Thanks,
> > > > > >> > > Julie
> > > > > >> > >
> > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
> > > > > >> > > Contractor,
> > > > Code
> > > > > >> > 7501.1
> > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > >> > >
> > > > > >> > > >
> > > > > >> > > > <URL:
> > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > >
> > > > > >> > > >
> > > > > >> > > > Configure.log has no meaningful info:
> > > > > >> > > >
> > > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > >> > > > [ramos at predict met-8.1]$
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > > > -----Original Message-----
> > > > > >> > > > From: John Halley Gotway via RT
> > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > >> > > > MET
> > > > > >> > > > 8.1
> > > > > Julie
> > > > > >> > > > Prestopnik
> > > > > >> > > >
> > > > > >> > > > Hi Greg,
> > > > > >> > > >
> > > > > >> > > > I'll go ahead and assign this ticket to Julie, and
she
> > > > > >> > > > should
> > > be
> > > > > >> > writing
> > > > > >> > > > you back in the next couple of days.
> > > > > >> > > >
> > > > > >> > > > I do know she'll want to see both the
"configure.log"
> > > > > >> > > > file you
> > > > > >> > generated
> > > > > >> > > as
> > > > > >> > > > well as the "config.log" file from that same
> > > > > >> > > > directory.
> > > > > >> > > > So
> > > > please
> > > > > >> send
> > > > > >> > > > those along when you get a chance.
> > > > > >> > > >
> > > > > >> > > > Thanks,
> > > > > >> > > > John
> > > > > >> > > >
> > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
> > > > > >> > > > Contractor,
> > > > > Code
> > > > > >> > > 7501.1
> > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > >> > > >
> > > > > >> > > > >
> > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted
> > > > > >> > > > > upon.
> > > > > >> > > > > Transaction: Ticket created by
> > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > >> > > > > Queue: met_help
> > > > > >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > > > >> > > > > Owner: Nobody
> > > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > >> > > > > Status: new
> > > > > >> > > > > Ticket <URL:
> > > > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >> > > >
> > > > > >> > > > >
> > > > > >> > > > >
> > > > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
> > > > > >> > > > > Anaconda
> > > > 2.4.0.
> > > > > >> The
> > > > > >> > > user
> > > > > >> > > > > asked for 8.1. I took notes last time, but
running
> > > > > >> > > > > into
> > > > > problems:
> > > > > >> > > > >
> > > > > >> > > > > MET Configuration settings...
> > > > > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > > > >> > > > > export
> > > > > >> > > > >
> > > > > >> >
> > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > 8.1/external_libs/include/freetype2
> > > > > >> > > > > export
> > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > >> > 8.1/external_libs/include/cairo
> > > > > >> > > > > export MET_GSL=/software/depot/met-
8.1/external_libs
> > > > > >> > > > > export
> > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > >> > 2.4.0/include/python2.7
> > > > > >> > > > > -I/software/depot/anaconda-
2.4.0/include/python2.7
> > > > > >> > -fno-strict-aliasing
> > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
-Wstrict-
> > > > > >> > > > > prototypes
> > > > > >> > > > > export MET_HDF=/software/depot/met-
8.1/external_libs
> > > > > >> > > > > export
> > > > > >> > > > >
> > > > > >> > > >
> > > > > >> > >
> > > > > >> >
> > > > > >>
> > > > >
> > > >
> > > MET_TARBALL=/software/depot/met-
8.1/tar_files//software/depot/met-
> > > 8.1/tar_files.tar
> > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs
> > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs
> > > > > >> > > > > export
> > > > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > > > >> > > > > export
> > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
> > > > > >> > > > > -lutil
> > > > > >> > > > > -lm
> > > > > >> -Xlinker
> > > > > >> > > > > -export-dynamic
> > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs
> > > > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs/lib
> > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-
8.1
> > > > > >> --enable-grib2
> > > > > >> > > > > --enable-modis --enable-mode_graphics --enable-
> > > > > >> > > > > lidar2nc >
> > > > > >> > > configure.log
> > > > > >> > > > > 2> &1
> > > > > >> > > > > configure returned with non-zero (127) status
> > > > > >> > > > >
> > > > > >> > > > >
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > >
> > > > > >> > >
> > > > > >> > >
> > > > > >> > >
> > > > > >> >
> > > > > >> >
> > > > > >> >
> > > > > >> >
> > > > > >>
> > > > > >>
> > > > > >>
> > > > >
> > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > >
> > >
> > >
> > >
> > >
> >
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Thu May 16 15:25:20 2019
These are the 8.1 binaries:
[ramos at lorenz met-8.1]$ ls -larth bin
total 395M
-rwxr-xr-x. 1 ramos ramos 19M May 11 13:27 ensemble_stat
-rwxr-xr-x. 1 ramos ramos 19M May 11 13:27 grid_stat
-rwxr-xr-x. 1 ramos ramos 20M May 11 13:27 mode
-rwxr-xr-x. 1 ramos ramos 9.2M May 11 13:27 mode_analysis
-rwxr-xr-x. 1 ramos ramos 13M May 11 13:27 pcp_combine
-rwxr-xr-x. 1 ramos ramos 18M May 11 13:27 point_stat
-rwxr-xr-x. 1 ramos ramos 21M May 11 13:27 stat_analysis
-rwxr-xr-x. 1 ramos ramos 19M May 11 13:27 wavelet_stat
-rwxr-xr-x. 1 ramos ramos 16M May 11 13:27 series_analysis
-rwxr-xr-x. 1 ramos ramos 1.3M May 11 13:27 gis_dump_shp
-rwxr-xr-x. 1 ramos ramos 1.1M May 11 13:27 gis_dump_shx
-rwxr-xr-x. 1 ramos ramos 1023K May 11 13:27 gis_dump_dbf
-rwxr-xr-x. 1 ramos ramos 14M May 11 13:27 gen_vx_mask
-rwxr-xr-x. 1 ramos ramos 14M May 11 13:27 plot_data_plane
-rwxr-xr-x. 1 ramos ramos 13M May 11 13:27 plot_point_obs
-rwxr-xr-x. 1 ramos ramos 16M May 11 13:27 ascii2nc
-rwxr-xr-x. 1 ramos ramos 3.7M May 11 13:27 lidar2nc
-rwxr-xr-x. 1 ramos ramos 15M May 11 13:27 madis2nc
-rwxr-xr-x. 1 ramos ramos 16M May 11 13:27 pb2nc
-rwxr-xr-x. 1 ramos ramos 14M May 11 13:27 wwmca_regrid
-rwxr-xr-x. 1 ramos ramos 15M May 11 13:27 wwmca_plot
-rwxr-xr-x. 1 ramos ramos 14M May 11 13:27 modis_regrid
-rwxr-xr-x. 1 ramos ramos 7.1M May 11 13:27 plot_mode_field
-rwxr-xr-x. 1 ramos ramos 16M May 11 13:27 mtd
-rwxr-xr-x. 1 ramos ramos 11M May 11 13:27 gsid2mpr
-rwxr-xr-x. 1 ramos ramos 11M May 11 13:27 gsidens2orank
-rwxr-xr-x. 1 ramos ramos 14M May 11 13:27 regrid_data_plane
-rwxr-xr-x. 1 ramos ramos 13M May 11 13:27 shift_data_plane
-rwxr-xr-x. 1 ramos ramos 6.0M May 11 13:27 tc_dland
-rwxr-xr-x. 1 ramos ramos 16M May 11 13:27 tc_pairs
-rwxr-xr-x. 1 ramos ramos 19M May 11 13:27 tc_stat
drwxr-xr-x. 9 ramos ramos 4.0K May 11 13:27 ..
drwxr-xr-x. 2 ramos ramos 4.0K May 11 13:44 .
[ramos at lorenz met-8.1]$
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Thursday, May 16, 2019 1:35 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
MET is expecting "libpython2.7.so" to enable python support.
A log message shows the python was not enabled. Is python supporting
is critical?
./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-grib2
--enable-modis --enable-mode_graphics --enable-lidar2nc >
configure.log 2>&1
If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
1. Make sure python is not enabled
no "--enable-python" option for ./configure
2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
3. Remove "/software/depot/anaconda-2.4.0/lib" from LD_LIBRARY_PATH
at the build time and runtime both.
Cheers,
Howard
On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> I was able to compile Met 8.0 on our Cray with:
>
> ramos at leo1:~> gcc --version
> gcc (GCC) 7.3.0 20180125 (Cray Inc.)
> Copyright (C) 2017 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions. There
> is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> PURPOSE.
>
> ramos at leo1:~> gfortran --version
> GNU Fortran (GCC) 7.3.0 20180125 (Cray Inc.)
> Copyright (C) 2017 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions. There
> is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> PURPOSE.
>
> ramos at leo1:~>
>
> We don't have that version on our Red Hat systems. Met 8.0 worked on
> RH, but 8.1 failed on the 'make test'. The user says she is fine
with
> the executables so far. I will have to build a gfortran 7.x version.
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 16, 2019 1:11 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hello,
>
> Is gcc/gfortran 7.x compiler available?
>
> The problem was caused by the path for python library
> (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4 exists there
> from the ldd output. It was used on building MET. MET was compiled
> with gcc 4.4.7 which supports only libgfortran.so.3, and linked with
> libgfortran.so.4 because of MET_PYTHON_LD configuration. Some
> libraries do not support the backward compatibility. libgfortran.so
is
> one of them. In this case, the compiler version and library version
> should match.
>
> [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-8.1/bin/pb2nc
|grep
> gfortran
> libgfortran.so.4 => /software/depot/anaconda-
> 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
>
> export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-dynamic
>
> The solution is compiling third party libraries and MET with version
> 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
libgfortran.so.5,
> So the same problem will happen if MET is built with gcc/gfortran
6.x
> or gcc/gfortran 8.x.
>
> Cheers,
> Howard
>
> On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > Attached is the config.log for NetCDf it shows /usr/bin/gcc
> >
> > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat version.
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 4:44 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Thank you. Unfortunately, that does not tell me if the libraries
and
> > the
> > MET code were built with the same version of the compiler. I also
do
> > not
> > see bufrlib in that list.
> >
> > Can you please tell me - were the libraries and the MET code built
> > with the
> > same version of the compiler? I'm checking to see if, for
example,
> > the
> > libraries were built with gcc-6.3.0 but the MET code was build
with
> > gcc-4.4.7.
> >
> > Thanks!
> >
> > Julie
> >
> > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >
> > > You can see I am using those libraries for MET 8.1:
> > >
> > > [root at maury2 bin]# ldd modis_regrid
> > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > libpython2.7.so.1.0 =>
> > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > (0x00002ab75e1f3000)
> > > libpthread.so.0 => /lib64/libpthread.so.0
> > > (0x00002ab75e63b000)
> > > libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> > > libutil.so.1 => /lib64/libutil.so.1 (0x00002ab75ea5c000)
> > > libpng16.so.16 =>
> > > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > > (0x00002ab75ec60000)
> > > libz.so.1 => /software/depot/met-
> > > 8.1/external_libs/lib/libz.so.1
> > > (0x00002ab75ee92000)
> > > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > > libnetcdf_c++4.so.1 =>
> > > /software/depot/met-8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > (0x00002ab75f32f000)
> > > libnetcdf.so.11 =>
> > > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > > (0x00002ab75f57c000)
> > > libgsl.so.19 =>
> > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > (0x00002ab75f8bb000)
> > > libgslcblas.so.0 =>
> > > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > > (0x00002ab75fcfe000)
> > > libjpeg.so.9 => /software/depot/anaconda-
> > > 2.4.0/lib/libjpeg.so.9
> > > (0x00002ab75ff37000)
> > > libstdc++.so.6 =>
> > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > (0x00002ab760189000)
> > > libgcc_s.so.1 => /software/depot/anaconda-
> > > 2.4.0/lib/libgcc_s.so.1
> > > (0x00002ab7602cb000)
> > > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > > libhdf5_hl.so.10 =>
> > > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > > (0x00002ab760675000)
> > > libhdf5.so.10 =>
> > > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > > (0x00002ab760894000)
> > > librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> > > [root at maury2 bin]#
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 4:26 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Thank you, Greg. Can you please tell me - were the libraries
and
> > > the
> > > MET
> > > code built with the same version of the compiler. I'm checking
to
> > > see if,
> > > for example, the libraries were built with gcc-6.3.0 but the MET
> > > code
> > > was
> > > build with gcc-4.4.7.
> > >
> > > It sounds like we need the libraries and the MET code to be
built
> > > with the
> > > same version of the compiler, in this case.
> > >
> > > Thanks for any information you can provide.
> > >
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor,
> > > Code
> > > 7501.1
> > > via RT <met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >
> > > > Find the logs attached.
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > Julie
> > > > Prestopnik
> > > >
> > > > Could you please run the following:
> > > >
> > > > which pb2nc
> > > > ldd <full path to pb2nc> | grep gfortran
> > > >
> > > > and send me the output?
> > > >
> > > > Please also send your config.log and make.log file.
> > > >
> > > > Thank you!
> > > >
> > > > Julie
> > > >
> > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
Contractor,
> > > > Code
> > > 7501.1
> > > > via RT <met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > > >
> > > > > I used the buildscript. It should build all of the external
> > > > > libraries,
> > > so
> > > > > I believe everything was built with the same compiler.
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > Julie
> > > > > Prestopnik
> > > > >
> > > > > Hi Greg. Our developer suspects it may be a mismatched
> > > compiler/library
> > > > > version. Was BUFRLIB installed with the same compiler as
MET?
> > > > > Also,
> > > > what
> > > > > version of BURRLIB are you using?
> > > > >
> > > > > Thanks,
> > > > > Julie
> > > > >
> > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > <jpresto at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > > Hi Greg. I am checking in with another developer
regarding
> > > > > > the
> > > > > > error
> > > > you
> > > > > > experienced. Thank you for your patience.
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
> > > > > > Contractor,
> > > > > > Code
> > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > >
> > > > > >>
> > > > > >> <URL:
> > > > > >> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >> >
> > > > > >>
> > > > > >> I was able to build on Red Hat using:
> > > > > >>
> > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > > >> This is free software; see the source for copying
> > > > > >> conditions.
> > > > > >> There
> > > > is
> > > > > NO
> > > > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > >> PARTICULAR
> > > > > >> PURPOSE.
> > > > > >>
> > > > > >> [ramos at lorenz ~]$
> > > > > >>
> > > > > >> Not all of the tests passed, please see attachment.
> > > > > >>
> > > > > >> Greg
> > > > > >>
> > > > > >> -----Original Message-----
> > > > > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > >> Julie
> > > > > >> Prestopnik
> > > > > >>
> > > > > >> Thank you for letting me know. I will proceed with
trying
> > > > > >> to
> > > > reproduce
> > > > > >> the
> > > > > >> problem using the gcc-6.3.0. I will follow up once I
have
> > > > > >> more
> > > > > >> information.
> > > > > >>
> > > > > >> Julie
> > > > > >>
> > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
> > > > > >> Contractor,
> > > > > >> Code
> > > > > 7501.1
> > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > >>
> > > > > >> >
> > > > > >> > <URL:
> > > > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > > > >> >
> > > > > >> > When I compiled MET 8.0 the last time, it worked. I was
> > > > > >> > also
> > > > > >> > able
> > > to
> > > > > >> > compile 8.0 on out Cray:
> > > > > >> >
> > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > >> > Password:
> > > > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > > > >> >
> > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > >> > Running 132MB Suse 12.3
> > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > >> >
> > > > > >> > You are accessing a U.S. Government (USG) Information
> > > > > >> > System
> > > > > >> > (IS)
> > > > that
> > > > > >> is
> > > > > >> > provided for USG-authorized use only.
> > > > > >> > By using this IS (which includes any device attached to
> > > > > >> > this
> > > > > >> > IS),
> > > > you
> > > > > >> > consent to the following conditions:
> > > > > >> > -The USG routinely intercepts and monitors
communications
> > > > > >> > on
> > > > > >> > this
> > > IS
> > > > > for
> > > > > >> > purposes including, but not limited to,
> > > > > >> > penetration testing, COMSEC monitoring, network
operations
> > > > > >> > and
> > > > > defense,
> > > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > > >> > and counterintelligence (CI) investigations.
> > > > > >> > -At any time, the USG may inspect and seize data stored
on
> > > > > >> > this
> > > IS.
> > > > > >> > -Communications using, or data stored on, this IS are
not
> > > > > >> > private,
> > > > are
> > > > > >> > subject to routine monitoring, interception,
> > > > > >> > and search, and may be disclosed or used for any USG-
> > > > > >> > authorized
> > > > > purpose.
> > > > > >> > -This IS includes security measures (e.g.,
authentication
> > > > > >> > and
> > > access
> > > > > >> > controls) to protect USG interests -- not for
> > > > > >> > your personal benefit or privacy.
> > > > > >> > -Notwithstanding the above, using this IS does not
> > > > > >> > constitute
> > > > consent
> > > > > to
> > > > > >> > PM, LE or CI investigative searching or
> > > > > >> > monitoring of the content of privileged communications,
or
> > > > > >> > work
> > > > > product,
> > > > > >> > related to personal representation or
> > > > > >> > services by attorneys, psychotherapists, or clergy, and
> > > > > >> > their
> > > > > >> assistants.
> > > > > >> > Such communications and work product are
> > > > > >> > private and confidential. See User Agreement for
details.
> > > > > >> >
> > > > > >> > ramos at leo1:~> which gcc
> > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > >> > ramos at leo1:~>
> > > > > >> >
> > > > > >> > -----Original Message-----
> > > > > >> > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > >> > 8.1
> > > Julie
> > > > > >> > Prestopnik
> > > > > >> >
> > > > > >> > Hi Gregory. I have not tested with version 6.3.0 of
the
> > > > > >> > gcc
> > > > compiler,
> > > > > >> but
> > > > > >> > rather only with lower versions (specifically 4.8.5).
We
> > > > > >> > would,
> > > of
> > > > > >> course,
> > > > > >> > want our code to work with higher versions as well. I
> > > > > >> > have
> > > > > >> > not
> > > yet
> > > > > had
> > > > > >> an
> > > > > >> > opportunity to test with a higher version like 6.3.0.
Do
> > > > > >> > you have
> > > > the
> > > > > >> > ability to compile MET using a lesser version of the
gcc
> > > > > >> > compiler
> > > to
> > > > > >> see if
> > > > > >> > that clears up the issues you are experiencing?
> > > > > >> >
> > > > > >> > Julie
> > > > > >> >
> > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
> > > > > >> > Contractor,
> > > Code
> > > > > >> 7501.1
> > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > >> >
> > > > > >> > >
> > > > > >> > > <URL:
> > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >> > > >
> > > > > >> > >
> > > > > >> > > Any updates or suggestions?
> > > > > >> > >
> > > > > >> > > Greg
> > > > > >> > >
> > > > > >> > > -----Original Message-----
> > > > > >> > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > >> > > 8.1
> > > > Julie
> > > > > >> > > Prestopnik
> > > > > >> > >
> > > > > >> > > Hi Greg. Thank you for passing along your config.log
> > > > > >> > > file. I
> > > > see a
> > > > > >> > couple
> > > > > >> > > of linker problems in there:
> > > > > >> > >
> > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > >> > >
> > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > >> > >
> > > > > >> > > Based on those errors, it looks like you may not have
> > > > > >> > > flex
> > > > > >> > > and
> > > > bison
> > > > > >> > > installed. Please install those and try running
> > > > > >> > > configure
> > > again.
> > > > > >> Please
> > > > > >> > > let us know how it goes.
> > > > > >> > >
> > > > > >> > > Also, I just wanted to address one other thing. In
your
> > > original
> > > > > >> email
> > > > > >> > you
> > > > > >> > > listed the following as part of your "MET
Configuration
> > > settings":
> > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil
> > > > > >> > > -lm
> > > > -Xlinker
> > > > > >> > > -export-dynamic
> > > > > >> > >
> > > > > >> > > However, in your config.log file it looks like
> > > > > >> > > MET_PYTHON_LD was
> > > > > >> actually
> > > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
> > > > > >> > > -lpython2.7
> > > > > -lpthread
> > > > > >> > -ldl
> > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is
correct
> > > > > >> > > because
> > > you
> > > > > >> need
> > > > > >> > to
> > > > > >> > > have that -L part in there, so I just want to ensure
> > > > > >> > > that
> > > > > >> > > will
> > > > stay
> > > > > >> there
> > > > > >> > > when you run configure again.
> > > > > >> > >
> > > > > >> > > Thanks,
> > > > > >> > > Julie
> > > > > >> > >
> > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
> > > > > >> > > Contractor,
> > > > Code
> > > > > >> > 7501.1
> > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > >> > >
> > > > > >> > > >
> > > > > >> > > > <URL:
> > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > >
> > > > > >> > > >
> > > > > >> > > > Configure.log has no meaningful info:
> > > > > >> > > >
> > > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > >> > > > [ramos at predict met-8.1]$
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > > > -----Original Message-----
> > > > > >> > > > From: John Halley Gotway via RT
> > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > >> > > > MET
> > > > > >> > > > 8.1
> > > > > Julie
> > > > > >> > > > Prestopnik
> > > > > >> > > >
> > > > > >> > > > Hi Greg,
> > > > > >> > > >
> > > > > >> > > > I'll go ahead and assign this ticket to Julie, and
she
> > > > > >> > > > should
> > > be
> > > > > >> > writing
> > > > > >> > > > you back in the next couple of days.
> > > > > >> > > >
> > > > > >> > > > I do know she'll want to see both the
"configure.log"
> > > > > >> > > > file you
> > > > > >> > generated
> > > > > >> > > as
> > > > > >> > > > well as the "config.log" file from that same
> > > > > >> > > > directory.
> > > > > >> > > > So
> > > > please
> > > > > >> send
> > > > > >> > > > those along when you get a chance.
> > > > > >> > > >
> > > > > >> > > > Thanks,
> > > > > >> > > > John
> > > > > >> > > >
> > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
> > > > > >> > > > Contractor,
> > > > > Code
> > > > > >> > > 7501.1
> > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > >> > > >
> > > > > >> > > > >
> > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted
> > > > > >> > > > > upon.
> > > > > >> > > > > Transaction: Ticket created by
> > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > >> > > > > Queue: met_help
> > > > > >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > > > >> > > > > Owner: Nobody
> > > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > >> > > > > Status: new
> > > > > >> > > > > Ticket <URL:
> > > > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >> > > >
> > > > > >> > > > >
> > > > > >> > > > >
> > > > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
> > > > > >> > > > > Anaconda
> > > > 2.4.0.
> > > > > >> The
> > > > > >> > > user
> > > > > >> > > > > asked for 8.1. I took notes last time, but
running
> > > > > >> > > > > into
> > > > > problems:
> > > > > >> > > > >
> > > > > >> > > > > MET Configuration settings...
> > > > > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > > > >> > > > > export
> > > > > >> > > > >
> > > > > >> >
> > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > 8.1/external_libs/include/freetype2
> > > > > >> > > > > export
> > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > >> > 8.1/external_libs/include/cairo
> > > > > >> > > > > export MET_GSL=/software/depot/met-
8.1/external_libs
> > > > > >> > > > > export
> > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > >> > 2.4.0/include/python2.7
> > > > > >> > > > > -I/software/depot/anaconda-
2.4.0/include/python2.7
> > > > > >> > -fno-strict-aliasing
> > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
-Wstrict-
> > > > > >> > > > > prototypes
> > > > > >> > > > > export MET_HDF=/software/depot/met-
8.1/external_libs
> > > > > >> > > > > export
> > > > > >> > > > >
> > > > > >> > > >
> > > > > >> > >
> > > > > >> >
> > > > > >>
> > > > >
> > > >
> > > MET_TARBALL=/software/depot/met-
8.1/tar_files//software/depot/met-
> > > 8.1/tar_files.tar
> > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs
> > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs
> > > > > >> > > > > export
> > > > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > > > >> > > > > export
> > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
> > > > > >> > > > > -lutil
> > > > > >> > > > > -lm
> > > > > >> -Xlinker
> > > > > >> > > > > -export-dynamic
> > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs
> > > > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs/lib
> > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-
8.1
> > > > > >> --enable-grib2
> > > > > >> > > > > --enable-modis --enable-mode_graphics --enable-
> > > > > >> > > > > lidar2nc >
> > > > > >> > > configure.log
> > > > > >> > > > > 2> &1
> > > > > >> > > > > configure returned with non-zero (127) status
> > > > > >> > > > >
> > > > > >> > > > >
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > >
> > > > > >> > >
> > > > > >> > >
> > > > > >> > >
> > > > > >> >
> > > > > >> >
> > > > > >> >
> > > > > >> >
> > > > > >>
> > > > > >>
> > > > > >>
> > > > >
> > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > >
> > >
> > >
> > >
> > >
> >
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Thu May 16 15:28:16 2019
[ramos at lorenz bin]$ module load met-8.1/met-8.1-with-grib2-support
[ramos at lorenz bin]$ ldd modis_regrid
linux-vdso.so.1 => (0x00007ffd599d5000)
libpython2.7.so.1.0 => /software/depot/anaconda-
2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003453800000)
libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
libpng16.so.16 => /software/depot/met-
8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
libz.so.1 => /software/depot/met-8.1/external_libs/lib/libz.so.1
(0x00007f7f19af4000)
libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
libnetcdf_c++4.so.1 => /software/depot/met-
8.1/external_libs/lib/libnetcdf_c++4.so.1 (0x00007f7f198a6000)
libnetcdf.so.11 => /software/depot/met-
8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
libgsl.so.19 => /software/depot/met-
8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
libgslcblas.so.0 => /software/depot/met-
8.1/external_libs/lib/libgslcblas.so.0 (0x00007f7f18eeb000)
libjpeg.so.9 => /software/depot/anaconda-2.4.0/lib/libjpeg.so.9
(0x00007f7f18c99000)
libstdc++.so.6 => /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
(0x00007f7f18b58000)
libgcc_s.so.1 => /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
(0x00007f7f18b42000)
libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
/lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
libhdf5_hl.so.10 => /software/depot/met-
8.1/external_libs/lib/libhdf5_hl.so.10 (0x00007f7f18922000)
libhdf5.so.10 => /software/depot/met-
8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
[ramos at lorenz bin]$
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Thursday, May 16, 2019 1:35 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
MET is expecting "libpython2.7.so" to enable python support.
A log message shows the python was not enabled. Is python supporting
is critical?
./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-grib2
--enable-modis --enable-mode_graphics --enable-lidar2nc >
configure.log 2>&1
If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
1. Make sure python is not enabled
no "--enable-python" option for ./configure
2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
3. Remove "/software/depot/anaconda-2.4.0/lib" from LD_LIBRARY_PATH
at the build time and runtime both.
Cheers,
Howard
On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> I was able to compile Met 8.0 on our Cray with:
>
> ramos at leo1:~> gcc --version
> gcc (GCC) 7.3.0 20180125 (Cray Inc.)
> Copyright (C) 2017 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions. There
> is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> PURPOSE.
>
> ramos at leo1:~> gfortran --version
> GNU Fortran (GCC) 7.3.0 20180125 (Cray Inc.)
> Copyright (C) 2017 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions. There
> is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> PURPOSE.
>
> ramos at leo1:~>
>
> We don't have that version on our Red Hat systems. Met 8.0 worked on
> RH, but 8.1 failed on the 'make test'. The user says she is fine
with
> the executables so far. I will have to build a gfortran 7.x version.
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 16, 2019 1:11 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Hello,
>
> Is gcc/gfortran 7.x compiler available?
>
> The problem was caused by the path for python library
> (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4 exists there
> from the ldd output. It was used on building MET. MET was compiled
> with gcc 4.4.7 which supports only libgfortran.so.3, and linked with
> libgfortran.so.4 because of MET_PYTHON_LD configuration. Some
> libraries do not support the backward compatibility. libgfortran.so
is
> one of them. In this case, the compiler version and library version
> should match.
>
> [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-8.1/bin/pb2nc
|grep
> gfortran
> libgfortran.so.4 => /software/depot/anaconda-
> 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
>
> export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-dynamic
>
> The solution is compiling third party libraries and MET with version
> 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
libgfortran.so.5,
> So the same problem will happen if MET is built with gcc/gfortran
6.x
> or gcc/gfortran 8.x.
>
> Cheers,
> Howard
>
> On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > Attached is the config.log for NetCDf it shows /usr/bin/gcc
> >
> > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat version.
> >
> > -----Original Message-----
> > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > Sent: Monday, May 13, 2019 4:44 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Thank you. Unfortunately, that does not tell me if the libraries
and
> > the
> > MET code were built with the same version of the compiler. I also
do
> > not
> > see bufrlib in that list.
> >
> > Can you please tell me - were the libraries and the MET code built
> > with the
> > same version of the compiler? I'm checking to see if, for
example,
> > the
> > libraries were built with gcc-6.3.0 but the MET code was build
with
> > gcc-4.4.7.
> >
> > Thanks!
> >
> > Julie
> >
> > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory, Contractor,
Code
> > 7501.1
> > via RT <met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > >
> > > You can see I am using those libraries for MET 8.1:
> > >
> > > [root at maury2 bin]# ldd modis_regrid
> > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > libpython2.7.so.1.0 =>
> > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > (0x00002ab75e1f3000)
> > > libpthread.so.0 => /lib64/libpthread.so.0
> > > (0x00002ab75e63b000)
> > > libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> > > libutil.so.1 => /lib64/libutil.so.1 (0x00002ab75ea5c000)
> > > libpng16.so.16 =>
> > > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > > (0x00002ab75ec60000)
> > > libz.so.1 => /software/depot/met-
> > > 8.1/external_libs/lib/libz.so.1
> > > (0x00002ab75ee92000)
> > > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > > libnetcdf_c++4.so.1 =>
> > > /software/depot/met-8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > (0x00002ab75f32f000)
> > > libnetcdf.so.11 =>
> > > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > > (0x00002ab75f57c000)
> > > libgsl.so.19 =>
> > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > (0x00002ab75f8bb000)
> > > libgslcblas.so.0 =>
> > > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > > (0x00002ab75fcfe000)
> > > libjpeg.so.9 => /software/depot/anaconda-
> > > 2.4.0/lib/libjpeg.so.9
> > > (0x00002ab75ff37000)
> > > libstdc++.so.6 =>
> > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > (0x00002ab760189000)
> > > libgcc_s.so.1 => /software/depot/anaconda-
> > > 2.4.0/lib/libgcc_s.so.1
> > > (0x00002ab7602cb000)
> > > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > > libhdf5_hl.so.10 =>
> > > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > > (0x00002ab760675000)
> > > libhdf5.so.10 =>
> > > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > > (0x00002ab760894000)
> > > librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> > > [root at maury2 bin]#
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 4:26 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Thank you, Greg. Can you please tell me - were the libraries
and
> > > the
> > > MET
> > > code built with the same version of the compiler. I'm checking
to
> > > see if,
> > > for example, the libraries were built with gcc-6.3.0 but the MET
> > > code
> > > was
> > > build with gcc-4.4.7.
> > >
> > > It sounds like we need the libraries and the MET code to be
built
> > > with the
> > > same version of the compiler, in this case.
> > >
> > > Thanks for any information you can provide.
> > >
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory, Contractor,
> > > Code
> > > 7501.1
> > > via RT <met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >
> > > > Find the logs attached.
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > Julie
> > > > Prestopnik
> > > >
> > > > Could you please run the following:
> > > >
> > > > which pb2nc
> > > > ldd <full path to pb2nc> | grep gfortran
> > > >
> > > > and send me the output?
> > > >
> > > > Please also send your config.log and make.log file.
> > > >
> > > > Thank you!
> > > >
> > > > Julie
> > > >
> > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
Contractor,
> > > > Code
> > > 7501.1
> > > > via RT <met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > > >
> > > > > I used the buildscript. It should build all of the external
> > > > > libraries,
> > > so
> > > > > I believe everything was built with the same compiler.
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > Julie
> > > > > Prestopnik
> > > > >
> > > > > Hi Greg. Our developer suspects it may be a mismatched
> > > compiler/library
> > > > > version. Was BUFRLIB installed with the same compiler as
MET?
> > > > > Also,
> > > > what
> > > > > version of BURRLIB are you using?
> > > > >
> > > > > Thanks,
> > > > > Julie
> > > > >
> > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > <jpresto at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > > Hi Greg. I am checking in with another developer
regarding
> > > > > > the
> > > > > > error
> > > > you
> > > > > > experienced. Thank you for your patience.
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
> > > > > > Contractor,
> > > > > > Code
> > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > >
> > > > > >>
> > > > > >> <URL:
> > > > > >> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >> >
> > > > > >>
> > > > > >> I was able to build on Red Hat using:
> > > > > >>
> > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > > >> This is free software; see the source for copying
> > > > > >> conditions.
> > > > > >> There
> > > > is
> > > > > NO
> > > > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > >> PARTICULAR
> > > > > >> PURPOSE.
> > > > > >>
> > > > > >> [ramos at lorenz ~]$
> > > > > >>
> > > > > >> Not all of the tests passed, please see attachment.
> > > > > >>
> > > > > >> Greg
> > > > > >>
> > > > > >> -----Original Message-----
> > > > > >> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > >> Julie
> > > > > >> Prestopnik
> > > > > >>
> > > > > >> Thank you for letting me know. I will proceed with
trying
> > > > > >> to
> > > > reproduce
> > > > > >> the
> > > > > >> problem using the gcc-6.3.0. I will follow up once I
have
> > > > > >> more
> > > > > >> information.
> > > > > >>
> > > > > >> Julie
> > > > > >>
> > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
> > > > > >> Contractor,
> > > > > >> Code
> > > > > 7501.1
> > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > >>
> > > > > >> >
> > > > > >> > <URL:
> > > > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > > > >> >
> > > > > >> > When I compiled MET 8.0 the last time, it worked. I was
> > > > > >> > also
> > > > > >> > able
> > > to
> > > > > >> > compile 8.0 on out Cray:
> > > > > >> >
> > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > >> > Password:
> > > > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > > > >> >
> > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > >> > Running 132MB Suse 12.3
> > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > >> >
> > > > > >> > You are accessing a U.S. Government (USG) Information
> > > > > >> > System
> > > > > >> > (IS)
> > > > that
> > > > > >> is
> > > > > >> > provided for USG-authorized use only.
> > > > > >> > By using this IS (which includes any device attached to
> > > > > >> > this
> > > > > >> > IS),
> > > > you
> > > > > >> > consent to the following conditions:
> > > > > >> > -The USG routinely intercepts and monitors
communications
> > > > > >> > on
> > > > > >> > this
> > > IS
> > > > > for
> > > > > >> > purposes including, but not limited to,
> > > > > >> > penetration testing, COMSEC monitoring, network
operations
> > > > > >> > and
> > > > > defense,
> > > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > > >> > and counterintelligence (CI) investigations.
> > > > > >> > -At any time, the USG may inspect and seize data stored
on
> > > > > >> > this
> > > IS.
> > > > > >> > -Communications using, or data stored on, this IS are
not
> > > > > >> > private,
> > > > are
> > > > > >> > subject to routine monitoring, interception,
> > > > > >> > and search, and may be disclosed or used for any USG-
> > > > > >> > authorized
> > > > > purpose.
> > > > > >> > -This IS includes security measures (e.g.,
authentication
> > > > > >> > and
> > > access
> > > > > >> > controls) to protect USG interests -- not for
> > > > > >> > your personal benefit or privacy.
> > > > > >> > -Notwithstanding the above, using this IS does not
> > > > > >> > constitute
> > > > consent
> > > > > to
> > > > > >> > PM, LE or CI investigative searching or
> > > > > >> > monitoring of the content of privileged communications,
or
> > > > > >> > work
> > > > > product,
> > > > > >> > related to personal representation or
> > > > > >> > services by attorneys, psychotherapists, or clergy, and
> > > > > >> > their
> > > > > >> assistants.
> > > > > >> > Such communications and work product are
> > > > > >> > private and confidential. See User Agreement for
details.
> > > > > >> >
> > > > > >> > ramos at leo1:~> which gcc
> > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > >> > ramos at leo1:~>
> > > > > >> >
> > > > > >> > -----Original Message-----
> > > > > >> > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > >> > 8.1
> > > Julie
> > > > > >> > Prestopnik
> > > > > >> >
> > > > > >> > Hi Gregory. I have not tested with version 6.3.0 of
the
> > > > > >> > gcc
> > > > compiler,
> > > > > >> but
> > > > > >> > rather only with lower versions (specifically 4.8.5).
We
> > > > > >> > would,
> > > of
> > > > > >> course,
> > > > > >> > want our code to work with higher versions as well. I
> > > > > >> > have
> > > > > >> > not
> > > yet
> > > > > had
> > > > > >> an
> > > > > >> > opportunity to test with a higher version like 6.3.0.
Do
> > > > > >> > you have
> > > > the
> > > > > >> > ability to compile MET using a lesser version of the
gcc
> > > > > >> > compiler
> > > to
> > > > > >> see if
> > > > > >> > that clears up the issues you are experiencing?
> > > > > >> >
> > > > > >> > Julie
> > > > > >> >
> > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
> > > > > >> > Contractor,
> > > Code
> > > > > >> 7501.1
> > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > >> >
> > > > > >> > >
> > > > > >> > > <URL:
> > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >> > > >
> > > > > >> > >
> > > > > >> > > Any updates or suggestions?
> > > > > >> > >
> > > > > >> > > Greg
> > > > > >> > >
> > > > > >> > > -----Original Message-----
> > > > > >> > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > >> > > 8.1
> > > > Julie
> > > > > >> > > Prestopnik
> > > > > >> > >
> > > > > >> > > Hi Greg. Thank you for passing along your config.log
> > > > > >> > > file. I
> > > > see a
> > > > > >> > couple
> > > > > >> > > of linker problems in there:
> > > > > >> > >
> > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > >> > >
> > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > >> > >
> > > > > >> > > Based on those errors, it looks like you may not have
> > > > > >> > > flex
> > > > > >> > > and
> > > > bison
> > > > > >> > > installed. Please install those and try running
> > > > > >> > > configure
> > > again.
> > > > > >> Please
> > > > > >> > > let us know how it goes.
> > > > > >> > >
> > > > > >> > > Also, I just wanted to address one other thing. In
your
> > > original
> > > > > >> email
> > > > > >> > you
> > > > > >> > > listed the following as part of your "MET
Configuration
> > > settings":
> > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil
> > > > > >> > > -lm
> > > > -Xlinker
> > > > > >> > > -export-dynamic
> > > > > >> > >
> > > > > >> > > However, in your config.log file it looks like
> > > > > >> > > MET_PYTHON_LD was
> > > > > >> actually
> > > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
> > > > > >> > > -lpython2.7
> > > > > -lpthread
> > > > > >> > -ldl
> > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is
correct
> > > > > >> > > because
> > > you
> > > > > >> need
> > > > > >> > to
> > > > > >> > > have that -L part in there, so I just want to ensure
> > > > > >> > > that
> > > > > >> > > will
> > > > stay
> > > > > >> there
> > > > > >> > > when you run configure again.
> > > > > >> > >
> > > > > >> > > Thanks,
> > > > > >> > > Julie
> > > > > >> > >
> > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
> > > > > >> > > Contractor,
> > > > Code
> > > > > >> > 7501.1
> > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > >> > >
> > > > > >> > > >
> > > > > >> > > > <URL:
> > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > >
> > > > > >> > > >
> > > > > >> > > > Configure.log has no meaningful info:
> > > > > >> > > >
> > > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > >> > > > [ramos at predict met-8.1]$
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > > > -----Original Message-----
> > > > > >> > > > From: John Halley Gotway via RT
> > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > >> > > > MET
> > > > > >> > > > 8.1
> > > > > Julie
> > > > > >> > > > Prestopnik
> > > > > >> > > >
> > > > > >> > > > Hi Greg,
> > > > > >> > > >
> > > > > >> > > > I'll go ahead and assign this ticket to Julie, and
she
> > > > > >> > > > should
> > > be
> > > > > >> > writing
> > > > > >> > > > you back in the next couple of days.
> > > > > >> > > >
> > > > > >> > > > I do know she'll want to see both the
"configure.log"
> > > > > >> > > > file you
> > > > > >> > generated
> > > > > >> > > as
> > > > > >> > > > well as the "config.log" file from that same
> > > > > >> > > > directory.
> > > > > >> > > > So
> > > > please
> > > > > >> send
> > > > > >> > > > those along when you get a chance.
> > > > > >> > > >
> > > > > >> > > > Thanks,
> > > > > >> > > > John
> > > > > >> > > >
> > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr. Gregory,
> > > > > >> > > > Contractor,
> > > > > Code
> > > > > >> > > 7501.1
> > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > >> > > >
> > > > > >> > > > >
> > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was acted
> > > > > >> > > > > upon.
> > > > > >> > > > > Transaction: Ticket created by
> > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > >> > > > > Queue: met_help
> > > > > >> > > > > Subject: Help regarding MET 8.1 Julie Prestopnik
> > > > > >> > > > > Owner: Nobody
> > > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > >> > > > > Status: new
> > > > > >> > > > > Ticket <URL:
> > > > > >> > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >> > > >
> > > > > >> > > > >
> > > > > >> > > > >
> > > > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0 and
> > > > > >> > > > > Anaconda
> > > > 2.4.0.
> > > > > >> The
> > > > > >> > > user
> > > > > >> > > > > asked for 8.1. I took notes last time, but
running
> > > > > >> > > > > into
> > > > > problems:
> > > > > >> > > > >
> > > > > >> > > > > MET Configuration settings...
> > > > > >> > > > > export MET_FONT_DIR=/software/depot/met-8.1/fonts
> > > > > >> > > > > export
> > > > > >> > > > >
> > > > > >> >
> > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > 8.1/external_libs/include/freetype2
> > > > > >> > > > > export
> > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > >> > 8.1/external_libs/include/cairo
> > > > > >> > > > > export MET_GSL=/software/depot/met-
8.1/external_libs
> > > > > >> > > > > export
> > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > >> > 2.4.0/include/python2.7
> > > > > >> > > > > -I/software/depot/anaconda-
2.4.0/include/python2.7
> > > > > >> > -fno-strict-aliasing
> > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
-Wstrict-
> > > > > >> > > > > prototypes
> > > > > >> > > > > export MET_HDF=/software/depot/met-
8.1/external_libs
> > > > > >> > > > > export
> > > > > >> > > > >
> > > > > >> > > >
> > > > > >> > >
> > > > > >> >
> > > > > >>
> > > > >
> > > >
> > > MET_TARBALL=/software/depot/met-
8.1/tar_files//software/depot/met-
> > > 8.1/tar_files.tar
> > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs
> > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs
> > > > > >> > > > > export
> > > > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > > > >> > > > > export
> > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
> > > > > >> > > > > -lutil
> > > > > >> > > > > -lm
> > > > > >> -Xlinker
> > > > > >> > > > > -export-dynamic
> > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs
> > > > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-8.1
> > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > >> > > > > 8.1/external_libs/lib
> > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > >> > > > > ./configure --prefix=/software/depot/met-8.1/met-
8.1
> > > > > >> --enable-grib2
> > > > > >> > > > > --enable-modis --enable-mode_graphics --enable-
> > > > > >> > > > > lidar2nc >
> > > > > >> > > configure.log
> > > > > >> > > > > 2> &1
> > > > > >> > > > > configure returned with non-zero (127) status
> > > > > >> > > > >
> > > > > >> > > > >
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > >
> > > > > >> > >
> > > > > >> > >
> > > > > >> > >
> > > > > >> >
> > > > > >> >
> > > > > >> >
> > > > > >> >
> > > > > >>
> > > > > >>
> > > > > >>
> > > > >
> > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > >
> > >
> > >
> > >
> > >
> >
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Howard Soh
Time: Thu May 16 15:45:39 2019
Would try this command at /software/depot/met-8.1/met-8.1/scripts
directory?
1. check the environtment variable LD_LIBRARY_PATH:
echo $LD_LIBRARY_PATH
2. Save LD_LIBRARY_PATH
setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
OR
export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
3. Set LD_LIBRARY_PATH without /software/depot/anaconda-2.4.0/lib
4. Check which libgfortran.so at /software/depot/met-8.1/met-
8.1/scripts directory.
ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran
OR
ldd ../bin/pb2nc | grep libgfortran
5. Check libgfortran version (should be libgfortran.so.3, not so.4)
6. Run the failed command manually at /software/depot/met-8.1/met-
8.1/scripts directory if libgfortran.so.3.
../src/tools/other/pb2nc/pb2nc \
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr \
../out/pb2nc/sample_pb.nc \
config/PB2NCConfig_G212 \
-v 2
7. Change back LD_LIBRARY_PATH
setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
OR
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
Cheers,
Howard
On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-grib2-support
> [ramos at lorenz bin]$ ldd modis_regrid
> linux-vdso.so.1 => (0x00007ffd599d5000)
> libpython2.7.so.1.0 => /software/depot/anaconda-
> 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003453800000)
> libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> libpng16.so.16 => /software/depot/met-
> 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> libz.so.1 => /software/depot/met-8.1/external_libs/lib/libz.so.1
> (0x00007f7f19af4000)
> libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> libnetcdf_c++4.so.1 => /software/depot/met-
> 8.1/external_libs/lib/libnetcdf_c++4.so.1 (0x00007f7f198a6000)
> libnetcdf.so.11 => /software/depot/met-
> 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> libgsl.so.19 => /software/depot/met-
> 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> libgslcblas.so.0 => /software/depot/met-
> 8.1/external_libs/lib/libgslcblas.so.0 (0x00007f7f18eeb000)
> libjpeg.so.9 => /software/depot/anaconda-2.4.0/lib/libjpeg.so.9
> (0x00007f7f18c99000)
> libstdc++.so.6 => /software/depot/anaconda-
2.4.0/lib/libstdc++.so.6
> (0x00007f7f18b58000)
> libgcc_s.so.1 => /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> (0x00007f7f18b42000)
> libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> libhdf5_hl.so.10 => /software/depot/met-
> 8.1/external_libs/lib/libhdf5_hl.so.10 (0x00007f7f18922000)
> libhdf5.so.10 => /software/depot/met-
> 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> [ramos at lorenz bin]$
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 16, 2019 1:35 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> MET is expecting "libpython2.7.so" to enable python support.
>
> A log message shows the python was not enabled. Is python supporting
> is critical?
>
> ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-grib2
> --enable-modis --enable-mode_graphics --enable-lidar2nc >
> configure.log 2>&1
>
> If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> 1. Make sure python is not enabled
> no "--enable-python" option for ./configure
> 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> 3. Remove "/software/depot/anaconda-2.4.0/lib" from
LD_LIBRARY_PATH
> at the build time and runtime both.
>
> Cheers,
> Howard
>
> On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > I was able to compile Met 8.0 on our Cray with:
> >
> > ramos at leo1:~> gcc --version
> > gcc (GCC) 7.3.0 20180125 (Cray Inc.)
> > Copyright (C) 2017 Free Software Foundation, Inc.
> > This is free software; see the source for copying conditions.
There
> > is NO
> > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> > PURPOSE.
> >
> > ramos at leo1:~> gfortran --version
> > GNU Fortran (GCC) 7.3.0 20180125 (Cray Inc.)
> > Copyright (C) 2017 Free Software Foundation, Inc.
> > This is free software; see the source for copying conditions.
There
> > is NO
> > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> > PURPOSE.
> >
> > ramos at leo1:~>
> >
> > We don't have that version on our Red Hat systems. Met 8.0 worked
on
> > RH, but 8.1 failed on the 'make test'. The user says she is fine
with
> > the executables so far. I will have to build a gfortran 7.x
version.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, May 16, 2019 1:11 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Hello,
> >
> > Is gcc/gfortran 7.x compiler available?
> >
> > The problem was caused by the path for python library
> > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4 exists
there
> > from the ldd output. It was used on building MET. MET was compiled
> > with gcc 4.4.7 which supports only libgfortran.so.3, and linked
with
> > libgfortran.so.4 because of MET_PYTHON_LD configuration. Some
> > libraries do not support the backward compatibility.
libgfortran.so
> > is
> > one of them. In this case, the compiler version and library
version
> > should match.
> >
> > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-8.1/bin/pb2nc
|grep
> > gfortran
> > libgfortran.so.4 => /software/depot/anaconda-
> > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> >
> > export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-
dynamic
> >
> > The solution is compiling third party libraries and MET with
version
> > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
libgfortran.so.5,
> > So the same problem will happen if MET is built with gcc/gfortran
6.x
> > or gcc/gfortran 8.x.
> >
> > Cheers,
> > Howard
> >
> > On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > Attached is the config.log for NetCDf it shows /usr/bin/gcc
> > >
> > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat version.
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 4:44 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Thank you. Unfortunately, that does not tell me if the
libraries
> > > and
> > > the
> > > MET code were built with the same version of the compiler. I
also
> > > do
> > > not
> > > see bufrlib in that list.
> > >
> > > Can you please tell me - were the libraries and the MET code
built
> > > with the
> > > same version of the compiler? I'm checking to see if, for
example,
> > > the
> > > libraries were built with gcc-6.3.0 but the MET code was build
with
> > > gcc-4.4.7.
> > >
> > > Thanks!
> > >
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory, Contractor,
> > > Code
> > > 7501.1
> > > via RT <met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >
> > > > You can see I am using those libraries for MET 8.1:
> > > >
> > > > [root at maury2 bin]# ldd modis_regrid
> > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > libpython2.7.so.1.0 =>
> > > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > > (0x00002ab75e1f3000)
> > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > (0x00002ab75e63b000)
> > > > libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> > > > libutil.so.1 => /lib64/libutil.so.1
(0x00002ab75ea5c000)
> > > > libpng16.so.16 =>
> > > > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > > > (0x00002ab75ec60000)
> > > > libz.so.1 => /software/depot/met-
> > > > 8.1/external_libs/lib/libz.so.1
> > > > (0x00002ab75ee92000)
> > > > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > > > libnetcdf_c++4.so.1 =>
> > > > /software/depot/met-8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > (0x00002ab75f32f000)
> > > > libnetcdf.so.11 =>
> > > > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > > > (0x00002ab75f57c000)
> > > > libgsl.so.19 =>
> > > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > > (0x00002ab75f8bb000)
> > > > libgslcblas.so.0 =>
> > > > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > > > (0x00002ab75fcfe000)
> > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > 2.4.0/lib/libjpeg.so.9
> > > > (0x00002ab75ff37000)
> > > > libstdc++.so.6 =>
> > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > (0x00002ab760189000)
> > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > 2.4.0/lib/libgcc_s.so.1
> > > > (0x00002ab7602cb000)
> > > > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > > > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > > > libhdf5_hl.so.10 =>
> > > > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > > > (0x00002ab760675000)
> > > > libhdf5.so.10 =>
> > > > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > > > (0x00002ab760894000)
> > > > librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> > > > [root at maury2 bin]#
> > > >
> > > > -----Original Message-----
> > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > Julie
> > > > Prestopnik
> > > >
> > > > Thank you, Greg. Can you please tell me - were the libraries
and
> > > > the
> > > > MET
> > > > code built with the same version of the compiler. I'm
checking
> > > > to
> > > > see if,
> > > > for example, the libraries were built with gcc-6.3.0 but the
MET
> > > > code
> > > > was
> > > > build with gcc-4.4.7.
> > > >
> > > > It sounds like we need the libraries and the MET code to be
built
> > > > with the
> > > > same version of the compiler, in this case.
> > > >
> > > > Thanks for any information you can provide.
> > > >
> > > > Julie
> > > >
> > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
Contractor,
> > > > Code
> > > > 7501.1
> > > > via RT <met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > > >
> > > > > Find the logs attached.
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > Julie
> > > > > Prestopnik
> > > > >
> > > > > Could you please run the following:
> > > > >
> > > > > which pb2nc
> > > > > ldd <full path to pb2nc> | grep gfortran
> > > > >
> > > > > and send me the output?
> > > > >
> > > > > Please also send your config.log and make.log file.
> > > > >
> > > > > Thank you!
> > > > >
> > > > > Julie
> > > > >
> > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
Contractor,
> > > > > Code
> > > > 7501.1
> > > > > via RT <met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >
> > > > > >
> > > > > > I used the buildscript. It should build all of the
external
> > > > > > libraries,
> > > > so
> > > > > > I believe everything was built with the same compiler.
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Hi Greg. Our developer suspects it may be a mismatched
> > > > compiler/library
> > > > > > version. Was BUFRLIB installed with the same compiler as
> > > > > > MET?
> > > > > > Also,
> > > > > what
> > > > > > version of BURRLIB are you using?
> > > > > >
> > > > > > Thanks,
> > > > > > Julie
> > > > > >
> > > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > > <jpresto at ucar.edu>
> > > > > > wrote:
> > > > > >
> > > > > > > Hi Greg. I am checking in with another developer
regarding
> > > > > > > the
> > > > > > > error
> > > > > you
> > > > > > > experienced. Thank you for your patience.
> > > > > > >
> > > > > > > Julie
> > > > > > >
> > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
> > > > > > > Contractor,
> > > > > > > Code
> > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > >>
> > > > > > >> <URL:
> > > > > > >> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >> >
> > > > > > >>
> > > > > > >> I was able to build on Red Hat using:
> > > > > > >>
> > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > > > >> This is free software; see the source for copying
> > > > > > >> conditions.
> > > > > > >> There
> > > > > is
> > > > > > NO
> > > > > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > >> PARTICULAR
> > > > > > >> PURPOSE.
> > > > > > >>
> > > > > > >> [ramos at lorenz ~]$
> > > > > > >>
> > > > > > >> Not all of the tests passed, please see attachment.
> > > > > > >>
> > > > > > >> Greg
> > > > > > >>
> > > > > > >> -----Original Message-----
> > > > > > >> From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > >> 8.1
> > > > > > >> Julie
> > > > > > >> Prestopnik
> > > > > > >>
> > > > > > >> Thank you for letting me know. I will proceed with
trying
> > > > > > >> to
> > > > > reproduce
> > > > > > >> the
> > > > > > >> problem using the gcc-6.3.0. I will follow up once I
have
> > > > > > >> more
> > > > > > >> information.
> > > > > > >>
> > > > > > >> Julie
> > > > > > >>
> > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
> > > > > > >> Contractor,
> > > > > > >> Code
> > > > > > 7501.1
> > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > >>
> > > > > > >> >
> > > > > > >> > <URL:
> > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >> > >
> > > > > > >> >
> > > > > > >> > When I compiled MET 8.0 the last time, it worked. I
was
> > > > > > >> > also
> > > > > > >> > able
> > > > to
> > > > > > >> > compile 8.0 on out Cray:
> > > > > > >> >
> > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > >> > Password:
> > > > > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > > > > >> >
> > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > >> > Running 132MB Suse 12.3
> > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > >> >
> > > > > > >> > You are accessing a U.S. Government (USG) Information
> > > > > > >> > System
> > > > > > >> > (IS)
> > > > > that
> > > > > > >> is
> > > > > > >> > provided for USG-authorized use only.
> > > > > > >> > By using this IS (which includes any device attached
to
> > > > > > >> > this
> > > > > > >> > IS),
> > > > > you
> > > > > > >> > consent to the following conditions:
> > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > >> > communications
> > > > > > >> > on
> > > > > > >> > this
> > > > IS
> > > > > > for
> > > > > > >> > purposes including, but not limited to,
> > > > > > >> > penetration testing, COMSEC monitoring, network
> > > > > > >> > operations
> > > > > > >> > and
> > > > > > defense,
> > > > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > > > >> > and counterintelligence (CI) investigations.
> > > > > > >> > -At any time, the USG may inspect and seize data
stored
> > > > > > >> > on
> > > > > > >> > this
> > > > IS.
> > > > > > >> > -Communications using, or data stored on, this IS are
> > > > > > >> > not
> > > > > > >> > private,
> > > > > are
> > > > > > >> > subject to routine monitoring, interception,
> > > > > > >> > and search, and may be disclosed or used for any USG-
> > > > > > >> > authorized
> > > > > > purpose.
> > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > >> > authentication
> > > > > > >> > and
> > > > access
> > > > > > >> > controls) to protect USG interests -- not for
> > > > > > >> > your personal benefit or privacy.
> > > > > > >> > -Notwithstanding the above, using this IS does not
> > > > > > >> > constitute
> > > > > consent
> > > > > > to
> > > > > > >> > PM, LE or CI investigative searching or
> > > > > > >> > monitoring of the content of privileged
communications,
> > > > > > >> > or
> > > > > > >> > work
> > > > > > product,
> > > > > > >> > related to personal representation or
> > > > > > >> > services by attorneys, psychotherapists, or clergy,
and
> > > > > > >> > their
> > > > > > >> assistants.
> > > > > > >> > Such communications and work product are
> > > > > > >> > private and confidential. See User Agreement for
> > > > > > >> > details.
> > > > > > >> >
> > > > > > >> > ramos at leo1:~> which gcc
> > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > >> > ramos at leo1:~>
> > > > > > >> >
> > > > > > >> > -----Original Message-----
> > > > > > >> > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > >> > 8.1
> > > > Julie
> > > > > > >> > Prestopnik
> > > > > > >> >
> > > > > > >> > Hi Gregory. I have not tested with version 6.3.0 of
the
> > > > > > >> > gcc
> > > > > compiler,
> > > > > > >> but
> > > > > > >> > rather only with lower versions (specifically 4.8.5).
> > > > > > >> > We
> > > > > > >> > would,
> > > > of
> > > > > > >> course,
> > > > > > >> > want our code to work with higher versions as well.
I
> > > > > > >> > have
> > > > > > >> > not
> > > > yet
> > > > > > had
> > > > > > >> an
> > > > > > >> > opportunity to test with a higher version like 6.3.0.
> > > > > > >> > Do
> > > > > > >> > you have
> > > > > the
> > > > > > >> > ability to compile MET using a lesser version of the
gcc
> > > > > > >> > compiler
> > > > to
> > > > > > >> see if
> > > > > > >> > that clears up the issues you are experiencing?
> > > > > > >> >
> > > > > > >> > Julie
> > > > > > >> >
> > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
> > > > > > >> > Contractor,
> > > > Code
> > > > > > >> 7501.1
> > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > >> >
> > > > > > >> > >
> > > > > > >> > > <URL:
> > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >> > > >
> > > > > > >> > >
> > > > > > >> > > Any updates or suggestions?
> > > > > > >> > >
> > > > > > >> > > Greg
> > > > > > >> > >
> > > > > > >> > > -----Original Message-----
> > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > >> > > MET
> > > > > > >> > > 8.1
> > > > > Julie
> > > > > > >> > > Prestopnik
> > > > > > >> > >
> > > > > > >> > > Hi Greg. Thank you for passing along your
config.log
> > > > > > >> > > file. I
> > > > > see a
> > > > > > >> > couple
> > > > > > >> > > of linker problems in there:
> > > > > > >> > >
> > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > >> > >
> > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > >> > >
> > > > > > >> > > Based on those errors, it looks like you may not
have
> > > > > > >> > > flex
> > > > > > >> > > and
> > > > > bison
> > > > > > >> > > installed. Please install those and try running
> > > > > > >> > > configure
> > > > again.
> > > > > > >> Please
> > > > > > >> > > let us know how it goes.
> > > > > > >> > >
> > > > > > >> > > Also, I just wanted to address one other thing. In
> > > > > > >> > > your
> > > > original
> > > > > > >> email
> > > > > > >> > you
> > > > > > >> > > listed the following as part of your "MET
> > > > > > >> > > Configuration
> > > > settings":
> > > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil
> > > > > > >> > > -lm
> > > > > -Xlinker
> > > > > > >> > > -export-dynamic
> > > > > > >> > >
> > > > > > >> > > However, in your config.log file it looks like
> > > > > > >> > > MET_PYTHON_LD was
> > > > > > >> actually
> > > > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
> > > > > > >> > > -lpython2.7
> > > > > > -lpthread
> > > > > > >> > -ldl
> > > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is
correct
> > > > > > >> > > because
> > > > you
> > > > > > >> need
> > > > > > >> > to
> > > > > > >> > > have that -L part in there, so I just want to
ensure
> > > > > > >> > > that
> > > > > > >> > > will
> > > > > stay
> > > > > > >> there
> > > > > > >> > > when you run configure again.
> > > > > > >> > >
> > > > > > >> > > Thanks,
> > > > > > >> > > Julie
> > > > > > >> > >
> > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
> > > > > > >> > > Contractor,
> > > > > Code
> > > > > > >> > 7501.1
> > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > >> > >
> > > > > > >> > > >
> > > > > > >> > > > <URL:
> > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > >
> > > > > > >> > > >
> > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > >> > > >
> > > > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > >> > > >
> > > > > > >> > > >
> > > > > > >> > > > -----Original Message-----
> > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > >> > > > MET
> > > > > > >> > > > 8.1
> > > > > > Julie
> > > > > > >> > > > Prestopnik
> > > > > > >> > > >
> > > > > > >> > > > Hi Greg,
> > > > > > >> > > >
> > > > > > >> > > > I'll go ahead and assign this ticket to Julie,
and
> > > > > > >> > > > she
> > > > > > >> > > > should
> > > > be
> > > > > > >> > writing
> > > > > > >> > > > you back in the next couple of days.
> > > > > > >> > > >
> > > > > > >> > > > I do know she'll want to see both the
> > > > > > >> > > > "configure.log"
> > > > > > >> > > > file you
> > > > > > >> > generated
> > > > > > >> > > as
> > > > > > >> > > > well as the "config.log" file from that same
> > > > > > >> > > > directory.
> > > > > > >> > > > So
> > > > > please
> > > > > > >> send
> > > > > > >> > > > those along when you get a chance.
> > > > > > >> > > >
> > > > > > >> > > > Thanks,
> > > > > > >> > > > John
> > > > > > >> > > >
> > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr.
Gregory,
> > > > > > >> > > > Contractor,
> > > > > > Code
> > > > > > >> > > 7501.1
> > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > >> > > >
> > > > > > >> > > > >
> > > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was
acted
> > > > > > >> > > > > upon.
> > > > > > >> > > > > Transaction: Ticket created by
> > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > >> > > > > Queue: met_help
> > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
Prestopnik
> > > > > > >> > > > > Owner: Nobody
> > > > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > >> > > > > Status: new
> > > > > > >> > > > > Ticket <URL:
> > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >> > > >
> > > > > > >> > > > >
> > > > > > >> > > > >
> > > > > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0
and
> > > > > > >> > > > > Anaconda
> > > > > 2.4.0.
> > > > > > >> The
> > > > > > >> > > user
> > > > > > >> > > > > asked for 8.1. I took notes last time, but
running
> > > > > > >> > > > > into
> > > > > > problems:
> > > > > > >> > > > >
> > > > > > >> > > > > MET Configuration settings...
> > > > > > >> > > > > export MET_FONT_DIR=/software/depot/met-
8.1/fonts
> > > > > > >> > > > > export
> > > > > > >> > > > >
> > > > > > >> >
> > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > 8.1/external_libs/include/freetype2
> > > > > > >> > > > > export
> > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export
> > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > >> > 2.4.0/include/python2.7
> > > > > > >> > > > > -I/software/depot/anaconda-
2.4.0/include/python2.7
> > > > > > >> > -fno-strict-aliasing
> > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
-Wstrict-
> > > > > > >> > > > > prototypes
> > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export
> > > > > > >> > > > >
> > > > > > >> > > >
> > > > > > >> > >
> > > > > > >> >
> > > > > > >>
> > > > > >
> > > > >
> > > > MET_TARBALL=/software/depot/met-
> > > > 8.1/tar_files//software/depot/met-
> > > > 8.1/tar_files.tar
> > > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export
> > > > > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > > > > >> > > > > export
> > > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
> > > > > > >> > > > > -lutil
> > > > > > >> > > > > -lm
> > > > > > >> -Xlinker
> > > > > > >> > > > > -export-dynamic
> > > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-
8.1
> > > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > >> > > > > ./configure --prefix=/software/depot/met-
8.1/met-
> > > > > > >> > > > > 8.1
> > > > > > >> --enable-grib2
> > > > > > >> > > > > --enable-modis --enable-mode_graphics --enable-
> > > > > > >> > > > > lidar2nc >
> > > > > > >> > > configure.log
> > > > > > >> > > > > 2> &1
> > > > > > >> > > > > configure returned with non-zero (127) status
> > > > > > >> > > > >
> > > > > > >> > > > >
> > > > > > >> > > >
> > > > > > >> > > >
> > > > > > >> > > >
> > > > > > >> > >
> > > > > > >> > >
> > > > > > >> > >
> > > > > > >> > >
> > > > > > >> >
> > > > > > >> >
> > > > > > >> >
> > > > > > >> >
> > > > > > >>
> > > > > > >>
> > > > > > >>
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > >
> > > >
> > >
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Thu May 16 15:50:38 2019
OK, right now I am working on building gcc 7.4.
But, in version MET 8.0, I had to set LD_LIBRARY_PATH to include
/software/depot/anaconda-2.4.0/lib
Otherwise I had other problems.
Greg
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Thursday, May 16, 2019 2:46 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Would try this command at /software/depot/met-8.1/met-8.1/scripts
directory?
1. check the environtment variable LD_LIBRARY_PATH:
echo $LD_LIBRARY_PATH
2. Save LD_LIBRARY_PATH
setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
OR
export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
3. Set LD_LIBRARY_PATH without /software/depot/anaconda-2.4.0/lib
4. Check which libgfortran.so at /software/depot/met-8.1/met-
8.1/scripts directory.
ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran
OR
ldd ../bin/pb2nc | grep libgfortran
5. Check libgfortran version (should be libgfortran.so.3, not so.4)
6. Run the failed command manually at /software/depot/met-8.1/met-
8.1/scripts directory if libgfortran.so.3.
../src/tools/other/pb2nc/pb2nc \
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr \
../out/pb2nc/sample_pb.nc \
config/PB2NCConfig_G212 \
-v 2
7. Change back LD_LIBRARY_PATH
setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
OR
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
Cheers,
Howard
On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-grib2-support
> [ramos at lorenz bin]$ ldd modis_regrid
> linux-vdso.so.1 => (0x00007ffd599d5000)
> libpython2.7.so.1.0 => /software/depot/anaconda-
> 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003453800000)
> libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> libpng16.so.16 => /software/depot/met-
> 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> libz.so.1 => /software/depot/met-8.1/external_libs/lib/libz.so.1
> (0x00007f7f19af4000)
> libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> libnetcdf_c++4.so.1 => /software/depot/met-
> 8.1/external_libs/lib/libnetcdf_c++4.so.1 (0x00007f7f198a6000)
> libnetcdf.so.11 => /software/depot/met-
> 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> libgsl.so.19 => /software/depot/met-
> 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> libgslcblas.so.0 => /software/depot/met-
> 8.1/external_libs/lib/libgslcblas.so.0 (0x00007f7f18eeb000)
> libjpeg.so.9 => /software/depot/anaconda-2.4.0/lib/libjpeg.so.9
> (0x00007f7f18c99000)
> libstdc++.so.6 => /software/depot/anaconda-
2.4.0/lib/libstdc++.so.6
> (0x00007f7f18b58000)
> libgcc_s.so.1 => /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> (0x00007f7f18b42000)
> libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> libhdf5_hl.so.10 => /software/depot/met-
> 8.1/external_libs/lib/libhdf5_hl.so.10 (0x00007f7f18922000)
> libhdf5.so.10 => /software/depot/met-
> 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> [ramos at lorenz bin]$
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 16, 2019 1:35 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> MET is expecting "libpython2.7.so" to enable python support.
>
> A log message shows the python was not enabled. Is python supporting
> is critical?
>
> ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-grib2
> --enable-modis --enable-mode_graphics --enable-lidar2nc >
> configure.log 2>&1
>
> If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> 1. Make sure python is not enabled
> no "--enable-python" option for ./configure
> 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> 3. Remove "/software/depot/anaconda-2.4.0/lib" from
LD_LIBRARY_PATH
> at the build time and runtime both.
>
> Cheers,
> Howard
>
> On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > I was able to compile Met 8.0 on our Cray with:
> >
> > ramos at leo1:~> gcc --version
> > gcc (GCC) 7.3.0 20180125 (Cray Inc.)
> > Copyright (C) 2017 Free Software Foundation, Inc.
> > This is free software; see the source for copying conditions.
There
> > is NO
> > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> > PURPOSE.
> >
> > ramos at leo1:~> gfortran --version
> > GNU Fortran (GCC) 7.3.0 20180125 (Cray Inc.)
> > Copyright (C) 2017 Free Software Foundation, Inc.
> > This is free software; see the source for copying conditions.
There
> > is NO
> > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> > PURPOSE.
> >
> > ramos at leo1:~>
> >
> > We don't have that version on our Red Hat systems. Met 8.0 worked
on
> > RH, but 8.1 failed on the 'make test'. The user says she is fine
with
> > the executables so far. I will have to build a gfortran 7.x
version.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, May 16, 2019 1:11 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Hello,
> >
> > Is gcc/gfortran 7.x compiler available?
> >
> > The problem was caused by the path for python library
> > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4 exists
there
> > from the ldd output. It was used on building MET. MET was compiled
> > with gcc 4.4.7 which supports only libgfortran.so.3, and linked
with
> > libgfortran.so.4 because of MET_PYTHON_LD configuration. Some
> > libraries do not support the backward compatibility.
libgfortran.so
> > is
> > one of them. In this case, the compiler version and library
version
> > should match.
> >
> > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-8.1/bin/pb2nc
|grep
> > gfortran
> > libgfortran.so.4 => /software/depot/anaconda-
> > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> >
> > export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-
dynamic
> >
> > The solution is compiling third party libraries and MET with
version
> > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
libgfortran.so.5,
> > So the same problem will happen if MET is built with gcc/gfortran
6.x
> > or gcc/gfortran 8.x.
> >
> > Cheers,
> > Howard
> >
> > On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > Attached is the config.log for NetCDf it shows /usr/bin/gcc
> > >
> > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat version.
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 4:44 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Thank you. Unfortunately, that does not tell me if the
libraries
> > > and
> > > the
> > > MET code were built with the same version of the compiler. I
also
> > > do
> > > not
> > > see bufrlib in that list.
> > >
> > > Can you please tell me - were the libraries and the MET code
built
> > > with the
> > > same version of the compiler? I'm checking to see if, for
example,
> > > the
> > > libraries were built with gcc-6.3.0 but the MET code was build
with
> > > gcc-4.4.7.
> > >
> > > Thanks!
> > >
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory, Contractor,
> > > Code
> > > 7501.1
> > > via RT <met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >
> > > > You can see I am using those libraries for MET 8.1:
> > > >
> > > > [root at maury2 bin]# ldd modis_regrid
> > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > libpython2.7.so.1.0 =>
> > > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > > (0x00002ab75e1f3000)
> > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > (0x00002ab75e63b000)
> > > > libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> > > > libutil.so.1 => /lib64/libutil.so.1
(0x00002ab75ea5c000)
> > > > libpng16.so.16 =>
> > > > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > > > (0x00002ab75ec60000)
> > > > libz.so.1 => /software/depot/met-
> > > > 8.1/external_libs/lib/libz.so.1
> > > > (0x00002ab75ee92000)
> > > > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > > > libnetcdf_c++4.so.1 =>
> > > > /software/depot/met-8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > (0x00002ab75f32f000)
> > > > libnetcdf.so.11 =>
> > > > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > > > (0x00002ab75f57c000)
> > > > libgsl.so.19 =>
> > > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > > (0x00002ab75f8bb000)
> > > > libgslcblas.so.0 =>
> > > > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > > > (0x00002ab75fcfe000)
> > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > 2.4.0/lib/libjpeg.so.9
> > > > (0x00002ab75ff37000)
> > > > libstdc++.so.6 =>
> > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > (0x00002ab760189000)
> > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > 2.4.0/lib/libgcc_s.so.1
> > > > (0x00002ab7602cb000)
> > > > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > > > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > > > libhdf5_hl.so.10 =>
> > > > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > > > (0x00002ab760675000)
> > > > libhdf5.so.10 =>
> > > > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > > > (0x00002ab760894000)
> > > > librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> > > > [root at maury2 bin]#
> > > >
> > > > -----Original Message-----
> > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > Julie
> > > > Prestopnik
> > > >
> > > > Thank you, Greg. Can you please tell me - were the libraries
and
> > > > the
> > > > MET
> > > > code built with the same version of the compiler. I'm
checking
> > > > to
> > > > see if,
> > > > for example, the libraries were built with gcc-6.3.0 but the
MET
> > > > code
> > > > was
> > > > build with gcc-4.4.7.
> > > >
> > > > It sounds like we need the libraries and the MET code to be
built
> > > > with the
> > > > same version of the compiler, in this case.
> > > >
> > > > Thanks for any information you can provide.
> > > >
> > > > Julie
> > > >
> > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
Contractor,
> > > > Code
> > > > 7501.1
> > > > via RT <met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > > >
> > > > > Find the logs attached.
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > Julie
> > > > > Prestopnik
> > > > >
> > > > > Could you please run the following:
> > > > >
> > > > > which pb2nc
> > > > > ldd <full path to pb2nc> | grep gfortran
> > > > >
> > > > > and send me the output?
> > > > >
> > > > > Please also send your config.log and make.log file.
> > > > >
> > > > > Thank you!
> > > > >
> > > > > Julie
> > > > >
> > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
Contractor,
> > > > > Code
> > > > 7501.1
> > > > > via RT <met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >
> > > > > >
> > > > > > I used the buildscript. It should build all of the
external
> > > > > > libraries,
> > > > so
> > > > > > I believe everything was built with the same compiler.
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Hi Greg. Our developer suspects it may be a mismatched
> > > > compiler/library
> > > > > > version. Was BUFRLIB installed with the same compiler as
> > > > > > MET?
> > > > > > Also,
> > > > > what
> > > > > > version of BURRLIB are you using?
> > > > > >
> > > > > > Thanks,
> > > > > > Julie
> > > > > >
> > > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > > <jpresto at ucar.edu>
> > > > > > wrote:
> > > > > >
> > > > > > > Hi Greg. I am checking in with another developer
regarding
> > > > > > > the
> > > > > > > error
> > > > > you
> > > > > > > experienced. Thank you for your patience.
> > > > > > >
> > > > > > > Julie
> > > > > > >
> > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
> > > > > > > Contractor,
> > > > > > > Code
> > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > >>
> > > > > > >> <URL:
> > > > > > >> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >> >
> > > > > > >>
> > > > > > >> I was able to build on Red Hat using:
> > > > > > >>
> > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > > > >> This is free software; see the source for copying
> > > > > > >> conditions.
> > > > > > >> There
> > > > > is
> > > > > > NO
> > > > > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > >> PARTICULAR
> > > > > > >> PURPOSE.
> > > > > > >>
> > > > > > >> [ramos at lorenz ~]$
> > > > > > >>
> > > > > > >> Not all of the tests passed, please see attachment.
> > > > > > >>
> > > > > > >> Greg
> > > > > > >>
> > > > > > >> -----Original Message-----
> > > > > > >> From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > >> 8.1
> > > > > > >> Julie
> > > > > > >> Prestopnik
> > > > > > >>
> > > > > > >> Thank you for letting me know. I will proceed with
trying
> > > > > > >> to
> > > > > reproduce
> > > > > > >> the
> > > > > > >> problem using the gcc-6.3.0. I will follow up once I
have
> > > > > > >> more
> > > > > > >> information.
> > > > > > >>
> > > > > > >> Julie
> > > > > > >>
> > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
> > > > > > >> Contractor,
> > > > > > >> Code
> > > > > > 7501.1
> > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > >>
> > > > > > >> >
> > > > > > >> > <URL:
> > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >> > >
> > > > > > >> >
> > > > > > >> > When I compiled MET 8.0 the last time, it worked. I
was
> > > > > > >> > also
> > > > > > >> > able
> > > > to
> > > > > > >> > compile 8.0 on out Cray:
> > > > > > >> >
> > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > >> > Password:
> > > > > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > > > > >> >
> > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > >> > Running 132MB Suse 12.3
> > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > >> >
> > > > > > >> > You are accessing a U.S. Government (USG) Information
> > > > > > >> > System
> > > > > > >> > (IS)
> > > > > that
> > > > > > >> is
> > > > > > >> > provided for USG-authorized use only.
> > > > > > >> > By using this IS (which includes any device attached
to
> > > > > > >> > this
> > > > > > >> > IS),
> > > > > you
> > > > > > >> > consent to the following conditions:
> > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > >> > communications
> > > > > > >> > on
> > > > > > >> > this
> > > > IS
> > > > > > for
> > > > > > >> > purposes including, but not limited to,
> > > > > > >> > penetration testing, COMSEC monitoring, network
> > > > > > >> > operations
> > > > > > >> > and
> > > > > > defense,
> > > > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > > > >> > and counterintelligence (CI) investigations.
> > > > > > >> > -At any time, the USG may inspect and seize data
stored
> > > > > > >> > on
> > > > > > >> > this
> > > > IS.
> > > > > > >> > -Communications using, or data stored on, this IS are
> > > > > > >> > not
> > > > > > >> > private,
> > > > > are
> > > > > > >> > subject to routine monitoring, interception,
> > > > > > >> > and search, and may be disclosed or used for any USG-
> > > > > > >> > authorized
> > > > > > purpose.
> > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > >> > authentication
> > > > > > >> > and
> > > > access
> > > > > > >> > controls) to protect USG interests -- not for
> > > > > > >> > your personal benefit or privacy.
> > > > > > >> > -Notwithstanding the above, using this IS does not
> > > > > > >> > constitute
> > > > > consent
> > > > > > to
> > > > > > >> > PM, LE or CI investigative searching or
> > > > > > >> > monitoring of the content of privileged
communications,
> > > > > > >> > or
> > > > > > >> > work
> > > > > > product,
> > > > > > >> > related to personal representation or
> > > > > > >> > services by attorneys, psychotherapists, or clergy,
and
> > > > > > >> > their
> > > > > > >> assistants.
> > > > > > >> > Such communications and work product are
> > > > > > >> > private and confidential. See User Agreement for
> > > > > > >> > details.
> > > > > > >> >
> > > > > > >> > ramos at leo1:~> which gcc
> > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > >> > ramos at leo1:~>
> > > > > > >> >
> > > > > > >> > -----Original Message-----
> > > > > > >> > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > >> > 8.1
> > > > Julie
> > > > > > >> > Prestopnik
> > > > > > >> >
> > > > > > >> > Hi Gregory. I have not tested with version 6.3.0 of
the
> > > > > > >> > gcc
> > > > > compiler,
> > > > > > >> but
> > > > > > >> > rather only with lower versions (specifically 4.8.5).
> > > > > > >> > We
> > > > > > >> > would,
> > > > of
> > > > > > >> course,
> > > > > > >> > want our code to work with higher versions as well.
I
> > > > > > >> > have
> > > > > > >> > not
> > > > yet
> > > > > > had
> > > > > > >> an
> > > > > > >> > opportunity to test with a higher version like 6.3.0.
> > > > > > >> > Do
> > > > > > >> > you have
> > > > > the
> > > > > > >> > ability to compile MET using a lesser version of the
gcc
> > > > > > >> > compiler
> > > > to
> > > > > > >> see if
> > > > > > >> > that clears up the issues you are experiencing?
> > > > > > >> >
> > > > > > >> > Julie
> > > > > > >> >
> > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
> > > > > > >> > Contractor,
> > > > Code
> > > > > > >> 7501.1
> > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > >> >
> > > > > > >> > >
> > > > > > >> > > <URL:
> > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >> > > >
> > > > > > >> > >
> > > > > > >> > > Any updates or suggestions?
> > > > > > >> > >
> > > > > > >> > > Greg
> > > > > > >> > >
> > > > > > >> > > -----Original Message-----
> > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > >> > > MET
> > > > > > >> > > 8.1
> > > > > Julie
> > > > > > >> > > Prestopnik
> > > > > > >> > >
> > > > > > >> > > Hi Greg. Thank you for passing along your
config.log
> > > > > > >> > > file. I
> > > > > see a
> > > > > > >> > couple
> > > > > > >> > > of linker problems in there:
> > > > > > >> > >
> > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > >> > >
> > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > >> > >
> > > > > > >> > > Based on those errors, it looks like you may not
have
> > > > > > >> > > flex
> > > > > > >> > > and
> > > > > bison
> > > > > > >> > > installed. Please install those and try running
> > > > > > >> > > configure
> > > > again.
> > > > > > >> Please
> > > > > > >> > > let us know how it goes.
> > > > > > >> > >
> > > > > > >> > > Also, I just wanted to address one other thing. In
> > > > > > >> > > your
> > > > original
> > > > > > >> email
> > > > > > >> > you
> > > > > > >> > > listed the following as part of your "MET
> > > > > > >> > > Configuration
> > > > settings":
> > > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil
> > > > > > >> > > -lm
> > > > > -Xlinker
> > > > > > >> > > -export-dynamic
> > > > > > >> > >
> > > > > > >> > > However, in your config.log file it looks like
> > > > > > >> > > MET_PYTHON_LD was
> > > > > > >> actually
> > > > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
> > > > > > >> > > -lpython2.7
> > > > > > -lpthread
> > > > > > >> > -ldl
> > > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is
correct
> > > > > > >> > > because
> > > > you
> > > > > > >> need
> > > > > > >> > to
> > > > > > >> > > have that -L part in there, so I just want to
ensure
> > > > > > >> > > that
> > > > > > >> > > will
> > > > > stay
> > > > > > >> there
> > > > > > >> > > when you run configure again.
> > > > > > >> > >
> > > > > > >> > > Thanks,
> > > > > > >> > > Julie
> > > > > > >> > >
> > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
> > > > > > >> > > Contractor,
> > > > > Code
> > > > > > >> > 7501.1
> > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > >> > >
> > > > > > >> > > >
> > > > > > >> > > > <URL:
> > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > >
> > > > > > >> > > >
> > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > >> > > >
> > > > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > >> > > >
> > > > > > >> > > >
> > > > > > >> > > > -----Original Message-----
> > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > >> > > > MET
> > > > > > >> > > > 8.1
> > > > > > Julie
> > > > > > >> > > > Prestopnik
> > > > > > >> > > >
> > > > > > >> > > > Hi Greg,
> > > > > > >> > > >
> > > > > > >> > > > I'll go ahead and assign this ticket to Julie,
and
> > > > > > >> > > > she
> > > > > > >> > > > should
> > > > be
> > > > > > >> > writing
> > > > > > >> > > > you back in the next couple of days.
> > > > > > >> > > >
> > > > > > >> > > > I do know she'll want to see both the
> > > > > > >> > > > "configure.log"
> > > > > > >> > > > file you
> > > > > > >> > generated
> > > > > > >> > > as
> > > > > > >> > > > well as the "config.log" file from that same
> > > > > > >> > > > directory.
> > > > > > >> > > > So
> > > > > please
> > > > > > >> send
> > > > > > >> > > > those along when you get a chance.
> > > > > > >> > > >
> > > > > > >> > > > Thanks,
> > > > > > >> > > > John
> > > > > > >> > > >
> > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr.
Gregory,
> > > > > > >> > > > Contractor,
> > > > > > Code
> > > > > > >> > > 7501.1
> > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > >> > > >
> > > > > > >> > > > >
> > > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was
acted
> > > > > > >> > > > > upon.
> > > > > > >> > > > > Transaction: Ticket created by
> > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > >> > > > > Queue: met_help
> > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
Prestopnik
> > > > > > >> > > > > Owner: Nobody
> > > > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > >> > > > > Status: new
> > > > > > >> > > > > Ticket <URL:
> > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >> > > >
> > > > > > >> > > > >
> > > > > > >> > > > >
> > > > > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0
and
> > > > > > >> > > > > Anaconda
> > > > > 2.4.0.
> > > > > > >> The
> > > > > > >> > > user
> > > > > > >> > > > > asked for 8.1. I took notes last time, but
running
> > > > > > >> > > > > into
> > > > > > problems:
> > > > > > >> > > > >
> > > > > > >> > > > > MET Configuration settings...
> > > > > > >> > > > > export MET_FONT_DIR=/software/depot/met-
8.1/fonts
> > > > > > >> > > > > export
> > > > > > >> > > > >
> > > > > > >> >
> > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > 8.1/external_libs/include/freetype2
> > > > > > >> > > > > export
> > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export
> > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > >> > 2.4.0/include/python2.7
> > > > > > >> > > > > -I/software/depot/anaconda-
2.4.0/include/python2.7
> > > > > > >> > -fno-strict-aliasing
> > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
-Wstrict-
> > > > > > >> > > > > prototypes
> > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export
> > > > > > >> > > > >
> > > > > > >> > > >
> > > > > > >> > >
> > > > > > >> >
> > > > > > >>
> > > > > >
> > > > >
> > > > MET_TARBALL=/software/depot/met-
> > > > 8.1/tar_files//software/depot/met-
> > > > 8.1/tar_files.tar
> > > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export
> > > > > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > > > > >> > > > > export
> > > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
> > > > > > >> > > > > -lutil
> > > > > > >> > > > > -lm
> > > > > > >> -Xlinker
> > > > > > >> > > > > -export-dynamic
> > > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-
8.1
> > > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > >> > > > > ./configure --prefix=/software/depot/met-
8.1/met-
> > > > > > >> > > > > 8.1
> > > > > > >> --enable-grib2
> > > > > > >> > > > > --enable-modis --enable-mode_graphics --enable-
> > > > > > >> > > > > lidar2nc >
> > > > > > >> > > configure.log
> > > > > > >> > > > > 2> &1
> > > > > > >> > > > > configure returned with non-zero (127) status
> > > > > > >> > > > >
> > > > > > >> > > > >
> > > > > > >> > > >
> > > > > > >> > > >
> > > > > > >> > > >
> > > > > > >> > >
> > > > > > >> > >
> > > > > > >> > >
> > > > > > >> > >
> > > > > > >> >
> > > > > > >> >
> > > > > > >> >
> > > > > > >> >
> > > > > > >>
> > > > > > >>
> > > > > > >>
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > >
> > > >
> > >
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Thu May 16 15:59:53 2019
I will rebuild MET-8.1 tomorrow with GCC 7.4:
[ramos at maury2 ~]$ module load met-8.1/met-8.1-with-grib2-support
[ramos at maury2 ~]$ echo $LD_LIBRARY_PATH
/software/depot/met-8.1/external_libs/lib:/software/depot/anaconda-
2.4.0/lib
[ramos at maury2 ~]$ cd /software/depot/met-8.1/met-8.1/scripts/
[ramos at maury2 scripts]$ ldd ../src/tools/other/pb2nc/pb2nc | grep
libgfortran
libgfortran.so.4 => /software/depot/anaconda-
2.4.0/lib/libgfortran.so.4 (0x00002b9606bdc000)
[ramos at maury2 scripts]$ export LD_LIBRARY_PATH=/software/depot/met-
8.1/external_libs/lib
[ramos at maury2 scripts]$ ldd ../src/tools/other/pb2nc/pb2nc | grep
libgfortran
libgfortran.so.4 => not found
[ramos at maury2 scripts]$ module load gcc-6.3.0/gcc-6.3.0
[ramos at maury2 scripts]$ ldd ../src/tools/other/pb2nc/pb2nc | grep
libgfortran
libgfortran.so.4 => not found
[ramos at maury2 scripts]$
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Thursday, May 16, 2019 2:46 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Would try this command at /software/depot/met-8.1/met-8.1/scripts
directory?
1. check the environtment variable LD_LIBRARY_PATH:
echo $LD_LIBRARY_PATH
2. Save LD_LIBRARY_PATH
setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
OR
export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
3. Set LD_LIBRARY_PATH without /software/depot/anaconda-2.4.0/lib
4. Check which libgfortran.so at /software/depot/met-8.1/met-
8.1/scripts directory.
ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran
OR
ldd ../bin/pb2nc | grep libgfortran
5. Check libgfortran version (should be libgfortran.so.3, not so.4)
6. Run the failed command manually at /software/depot/met-8.1/met-
8.1/scripts directory if libgfortran.so.3.
../src/tools/other/pb2nc/pb2nc \
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr \
../out/pb2nc/sample_pb.nc \
config/PB2NCConfig_G212 \
-v 2
7. Change back LD_LIBRARY_PATH
setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
OR
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
Cheers,
Howard
On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-grib2-support
> [ramos at lorenz bin]$ ldd modis_regrid
> linux-vdso.so.1 => (0x00007ffd599d5000)
> libpython2.7.so.1.0 => /software/depot/anaconda-
> 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003453800000)
> libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> libpng16.so.16 => /software/depot/met-
> 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> libz.so.1 => /software/depot/met-8.1/external_libs/lib/libz.so.1
> (0x00007f7f19af4000)
> libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> libnetcdf_c++4.so.1 => /software/depot/met-
> 8.1/external_libs/lib/libnetcdf_c++4.so.1 (0x00007f7f198a6000)
> libnetcdf.so.11 => /software/depot/met-
> 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> libgsl.so.19 => /software/depot/met-
> 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> libgslcblas.so.0 => /software/depot/met-
> 8.1/external_libs/lib/libgslcblas.so.0 (0x00007f7f18eeb000)
> libjpeg.so.9 => /software/depot/anaconda-2.4.0/lib/libjpeg.so.9
> (0x00007f7f18c99000)
> libstdc++.so.6 => /software/depot/anaconda-
2.4.0/lib/libstdc++.so.6
> (0x00007f7f18b58000)
> libgcc_s.so.1 => /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> (0x00007f7f18b42000)
> libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> libhdf5_hl.so.10 => /software/depot/met-
> 8.1/external_libs/lib/libhdf5_hl.so.10 (0x00007f7f18922000)
> libhdf5.so.10 => /software/depot/met-
> 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> [ramos at lorenz bin]$
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 16, 2019 1:35 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> MET is expecting "libpython2.7.so" to enable python support.
>
> A log message shows the python was not enabled. Is python supporting
> is critical?
>
> ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-grib2
> --enable-modis --enable-mode_graphics --enable-lidar2nc >
> configure.log 2>&1
>
> If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> 1. Make sure python is not enabled
> no "--enable-python" option for ./configure
> 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> 3. Remove "/software/depot/anaconda-2.4.0/lib" from
LD_LIBRARY_PATH
> at the build time and runtime both.
>
> Cheers,
> Howard
>
> On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > I was able to compile Met 8.0 on our Cray with:
> >
> > ramos at leo1:~> gcc --version
> > gcc (GCC) 7.3.0 20180125 (Cray Inc.)
> > Copyright (C) 2017 Free Software Foundation, Inc.
> > This is free software; see the source for copying conditions.
There
> > is NO
> > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> > PURPOSE.
> >
> > ramos at leo1:~> gfortran --version
> > GNU Fortran (GCC) 7.3.0 20180125 (Cray Inc.)
> > Copyright (C) 2017 Free Software Foundation, Inc.
> > This is free software; see the source for copying conditions.
There
> > is NO
> > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> > PURPOSE.
> >
> > ramos at leo1:~>
> >
> > We don't have that version on our Red Hat systems. Met 8.0 worked
on
> > RH, but 8.1 failed on the 'make test'. The user says she is fine
with
> > the executables so far. I will have to build a gfortran 7.x
version.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, May 16, 2019 1:11 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Hello,
> >
> > Is gcc/gfortran 7.x compiler available?
> >
> > The problem was caused by the path for python library
> > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4 exists
there
> > from the ldd output. It was used on building MET. MET was compiled
> > with gcc 4.4.7 which supports only libgfortran.so.3, and linked
with
> > libgfortran.so.4 because of MET_PYTHON_LD configuration. Some
> > libraries do not support the backward compatibility.
libgfortran.so
> > is
> > one of them. In this case, the compiler version and library
version
> > should match.
> >
> > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-8.1/bin/pb2nc
|grep
> > gfortran
> > libgfortran.so.4 => /software/depot/anaconda-
> > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> >
> > export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-
dynamic
> >
> > The solution is compiling third party libraries and MET with
version
> > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
libgfortran.so.5,
> > So the same problem will happen if MET is built with gcc/gfortran
6.x
> > or gcc/gfortran 8.x.
> >
> > Cheers,
> > Howard
> >
> > On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > Attached is the config.log for NetCDf it shows /usr/bin/gcc
> > >
> > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat version.
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 4:44 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Thank you. Unfortunately, that does not tell me if the
libraries
> > > and
> > > the
> > > MET code were built with the same version of the compiler. I
also
> > > do
> > > not
> > > see bufrlib in that list.
> > >
> > > Can you please tell me - were the libraries and the MET code
built
> > > with the
> > > same version of the compiler? I'm checking to see if, for
example,
> > > the
> > > libraries were built with gcc-6.3.0 but the MET code was build
with
> > > gcc-4.4.7.
> > >
> > > Thanks!
> > >
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory, Contractor,
> > > Code
> > > 7501.1
> > > via RT <met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >
> > > > You can see I am using those libraries for MET 8.1:
> > > >
> > > > [root at maury2 bin]# ldd modis_regrid
> > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > libpython2.7.so.1.0 =>
> > > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > > (0x00002ab75e1f3000)
> > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > (0x00002ab75e63b000)
> > > > libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> > > > libutil.so.1 => /lib64/libutil.so.1
(0x00002ab75ea5c000)
> > > > libpng16.so.16 =>
> > > > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > > > (0x00002ab75ec60000)
> > > > libz.so.1 => /software/depot/met-
> > > > 8.1/external_libs/lib/libz.so.1
> > > > (0x00002ab75ee92000)
> > > > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > > > libnetcdf_c++4.so.1 =>
> > > > /software/depot/met-8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > (0x00002ab75f32f000)
> > > > libnetcdf.so.11 =>
> > > > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > > > (0x00002ab75f57c000)
> > > > libgsl.so.19 =>
> > > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > > (0x00002ab75f8bb000)
> > > > libgslcblas.so.0 =>
> > > > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > > > (0x00002ab75fcfe000)
> > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > 2.4.0/lib/libjpeg.so.9
> > > > (0x00002ab75ff37000)
> > > > libstdc++.so.6 =>
> > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > (0x00002ab760189000)
> > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > 2.4.0/lib/libgcc_s.so.1
> > > > (0x00002ab7602cb000)
> > > > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > > > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > > > libhdf5_hl.so.10 =>
> > > > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > > > (0x00002ab760675000)
> > > > libhdf5.so.10 =>
> > > > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > > > (0x00002ab760894000)
> > > > librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> > > > [root at maury2 bin]#
> > > >
> > > > -----Original Message-----
> > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > Julie
> > > > Prestopnik
> > > >
> > > > Thank you, Greg. Can you please tell me - were the libraries
and
> > > > the
> > > > MET
> > > > code built with the same version of the compiler. I'm
checking
> > > > to
> > > > see if,
> > > > for example, the libraries were built with gcc-6.3.0 but the
MET
> > > > code
> > > > was
> > > > build with gcc-4.4.7.
> > > >
> > > > It sounds like we need the libraries and the MET code to be
built
> > > > with the
> > > > same version of the compiler, in this case.
> > > >
> > > > Thanks for any information you can provide.
> > > >
> > > > Julie
> > > >
> > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
Contractor,
> > > > Code
> > > > 7501.1
> > > > via RT <met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > > >
> > > > > Find the logs attached.
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > Julie
> > > > > Prestopnik
> > > > >
> > > > > Could you please run the following:
> > > > >
> > > > > which pb2nc
> > > > > ldd <full path to pb2nc> | grep gfortran
> > > > >
> > > > > and send me the output?
> > > > >
> > > > > Please also send your config.log and make.log file.
> > > > >
> > > > > Thank you!
> > > > >
> > > > > Julie
> > > > >
> > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
Contractor,
> > > > > Code
> > > > 7501.1
> > > > > via RT <met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >
> > > > > >
> > > > > > I used the buildscript. It should build all of the
external
> > > > > > libraries,
> > > > so
> > > > > > I believe everything was built with the same compiler.
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Hi Greg. Our developer suspects it may be a mismatched
> > > > compiler/library
> > > > > > version. Was BUFRLIB installed with the same compiler as
> > > > > > MET?
> > > > > > Also,
> > > > > what
> > > > > > version of BURRLIB are you using?
> > > > > >
> > > > > > Thanks,
> > > > > > Julie
> > > > > >
> > > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > > <jpresto at ucar.edu>
> > > > > > wrote:
> > > > > >
> > > > > > > Hi Greg. I am checking in with another developer
regarding
> > > > > > > the
> > > > > > > error
> > > > > you
> > > > > > > experienced. Thank you for your patience.
> > > > > > >
> > > > > > > Julie
> > > > > > >
> > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
> > > > > > > Contractor,
> > > > > > > Code
> > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > >>
> > > > > > >> <URL:
> > > > > > >> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >> >
> > > > > > >>
> > > > > > >> I was able to build on Red Hat using:
> > > > > > >>
> > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > > > >> This is free software; see the source for copying
> > > > > > >> conditions.
> > > > > > >> There
> > > > > is
> > > > > > NO
> > > > > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > >> PARTICULAR
> > > > > > >> PURPOSE.
> > > > > > >>
> > > > > > >> [ramos at lorenz ~]$
> > > > > > >>
> > > > > > >> Not all of the tests passed, please see attachment.
> > > > > > >>
> > > > > > >> Greg
> > > > > > >>
> > > > > > >> -----Original Message-----
> > > > > > >> From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > >> 8.1
> > > > > > >> Julie
> > > > > > >> Prestopnik
> > > > > > >>
> > > > > > >> Thank you for letting me know. I will proceed with
trying
> > > > > > >> to
> > > > > reproduce
> > > > > > >> the
> > > > > > >> problem using the gcc-6.3.0. I will follow up once I
have
> > > > > > >> more
> > > > > > >> information.
> > > > > > >>
> > > > > > >> Julie
> > > > > > >>
> > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
> > > > > > >> Contractor,
> > > > > > >> Code
> > > > > > 7501.1
> > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > >>
> > > > > > >> >
> > > > > > >> > <URL:
> > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >> > >
> > > > > > >> >
> > > > > > >> > When I compiled MET 8.0 the last time, it worked. I
was
> > > > > > >> > also
> > > > > > >> > able
> > > > to
> > > > > > >> > compile 8.0 on out Cray:
> > > > > > >> >
> > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > >> > Password:
> > > > > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > > > > >> >
> > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > >> > Running 132MB Suse 12.3
> > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > >> >
> > > > > > >> > You are accessing a U.S. Government (USG) Information
> > > > > > >> > System
> > > > > > >> > (IS)
> > > > > that
> > > > > > >> is
> > > > > > >> > provided for USG-authorized use only.
> > > > > > >> > By using this IS (which includes any device attached
to
> > > > > > >> > this
> > > > > > >> > IS),
> > > > > you
> > > > > > >> > consent to the following conditions:
> > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > >> > communications
> > > > > > >> > on
> > > > > > >> > this
> > > > IS
> > > > > > for
> > > > > > >> > purposes including, but not limited to,
> > > > > > >> > penetration testing, COMSEC monitoring, network
> > > > > > >> > operations
> > > > > > >> > and
> > > > > > defense,
> > > > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > > > >> > and counterintelligence (CI) investigations.
> > > > > > >> > -At any time, the USG may inspect and seize data
stored
> > > > > > >> > on
> > > > > > >> > this
> > > > IS.
> > > > > > >> > -Communications using, or data stored on, this IS are
> > > > > > >> > not
> > > > > > >> > private,
> > > > > are
> > > > > > >> > subject to routine monitoring, interception,
> > > > > > >> > and search, and may be disclosed or used for any USG-
> > > > > > >> > authorized
> > > > > > purpose.
> > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > >> > authentication
> > > > > > >> > and
> > > > access
> > > > > > >> > controls) to protect USG interests -- not for
> > > > > > >> > your personal benefit or privacy.
> > > > > > >> > -Notwithstanding the above, using this IS does not
> > > > > > >> > constitute
> > > > > consent
> > > > > > to
> > > > > > >> > PM, LE or CI investigative searching or
> > > > > > >> > monitoring of the content of privileged
communications,
> > > > > > >> > or
> > > > > > >> > work
> > > > > > product,
> > > > > > >> > related to personal representation or
> > > > > > >> > services by attorneys, psychotherapists, or clergy,
and
> > > > > > >> > their
> > > > > > >> assistants.
> > > > > > >> > Such communications and work product are
> > > > > > >> > private and confidential. See User Agreement for
> > > > > > >> > details.
> > > > > > >> >
> > > > > > >> > ramos at leo1:~> which gcc
> > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > >> > ramos at leo1:~>
> > > > > > >> >
> > > > > > >> > -----Original Message-----
> > > > > > >> > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > >> > 8.1
> > > > Julie
> > > > > > >> > Prestopnik
> > > > > > >> >
> > > > > > >> > Hi Gregory. I have not tested with version 6.3.0 of
the
> > > > > > >> > gcc
> > > > > compiler,
> > > > > > >> but
> > > > > > >> > rather only with lower versions (specifically 4.8.5).
> > > > > > >> > We
> > > > > > >> > would,
> > > > of
> > > > > > >> course,
> > > > > > >> > want our code to work with higher versions as well.
I
> > > > > > >> > have
> > > > > > >> > not
> > > > yet
> > > > > > had
> > > > > > >> an
> > > > > > >> > opportunity to test with a higher version like 6.3.0.
> > > > > > >> > Do
> > > > > > >> > you have
> > > > > the
> > > > > > >> > ability to compile MET using a lesser version of the
gcc
> > > > > > >> > compiler
> > > > to
> > > > > > >> see if
> > > > > > >> > that clears up the issues you are experiencing?
> > > > > > >> >
> > > > > > >> > Julie
> > > > > > >> >
> > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
> > > > > > >> > Contractor,
> > > > Code
> > > > > > >> 7501.1
> > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > >> >
> > > > > > >> > >
> > > > > > >> > > <URL:
> > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >> > > >
> > > > > > >> > >
> > > > > > >> > > Any updates or suggestions?
> > > > > > >> > >
> > > > > > >> > > Greg
> > > > > > >> > >
> > > > > > >> > > -----Original Message-----
> > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > >> > > MET
> > > > > > >> > > 8.1
> > > > > Julie
> > > > > > >> > > Prestopnik
> > > > > > >> > >
> > > > > > >> > > Hi Greg. Thank you for passing along your
config.log
> > > > > > >> > > file. I
> > > > > see a
> > > > > > >> > couple
> > > > > > >> > > of linker problems in there:
> > > > > > >> > >
> > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > >> > >
> > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > >> > >
> > > > > > >> > > Based on those errors, it looks like you may not
have
> > > > > > >> > > flex
> > > > > > >> > > and
> > > > > bison
> > > > > > >> > > installed. Please install those and try running
> > > > > > >> > > configure
> > > > again.
> > > > > > >> Please
> > > > > > >> > > let us know how it goes.
> > > > > > >> > >
> > > > > > >> > > Also, I just wanted to address one other thing. In
> > > > > > >> > > your
> > > > original
> > > > > > >> email
> > > > > > >> > you
> > > > > > >> > > listed the following as part of your "MET
> > > > > > >> > > Configuration
> > > > settings":
> > > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil
> > > > > > >> > > -lm
> > > > > -Xlinker
> > > > > > >> > > -export-dynamic
> > > > > > >> > >
> > > > > > >> > > However, in your config.log file it looks like
> > > > > > >> > > MET_PYTHON_LD was
> > > > > > >> actually
> > > > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
> > > > > > >> > > -lpython2.7
> > > > > > -lpthread
> > > > > > >> > -ldl
> > > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is
correct
> > > > > > >> > > because
> > > > you
> > > > > > >> need
> > > > > > >> > to
> > > > > > >> > > have that -L part in there, so I just want to
ensure
> > > > > > >> > > that
> > > > > > >> > > will
> > > > > stay
> > > > > > >> there
> > > > > > >> > > when you run configure again.
> > > > > > >> > >
> > > > > > >> > > Thanks,
> > > > > > >> > > Julie
> > > > > > >> > >
> > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
> > > > > > >> > > Contractor,
> > > > > Code
> > > > > > >> > 7501.1
> > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > >> > >
> > > > > > >> > > >
> > > > > > >> > > > <URL:
> > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > >
> > > > > > >> > > >
> > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > >> > > >
> > > > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > >> > > >
> > > > > > >> > > >
> > > > > > >> > > > -----Original Message-----
> > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > >> > > > MET
> > > > > > >> > > > 8.1
> > > > > > Julie
> > > > > > >> > > > Prestopnik
> > > > > > >> > > >
> > > > > > >> > > > Hi Greg,
> > > > > > >> > > >
> > > > > > >> > > > I'll go ahead and assign this ticket to Julie,
and
> > > > > > >> > > > she
> > > > > > >> > > > should
> > > > be
> > > > > > >> > writing
> > > > > > >> > > > you back in the next couple of days.
> > > > > > >> > > >
> > > > > > >> > > > I do know she'll want to see both the
> > > > > > >> > > > "configure.log"
> > > > > > >> > > > file you
> > > > > > >> > generated
> > > > > > >> > > as
> > > > > > >> > > > well as the "config.log" file from that same
> > > > > > >> > > > directory.
> > > > > > >> > > > So
> > > > > please
> > > > > > >> send
> > > > > > >> > > > those along when you get a chance.
> > > > > > >> > > >
> > > > > > >> > > > Thanks,
> > > > > > >> > > > John
> > > > > > >> > > >
> > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr.
Gregory,
> > > > > > >> > > > Contractor,
> > > > > > Code
> > > > > > >> > > 7501.1
> > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > >> > > >
> > > > > > >> > > > >
> > > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was
acted
> > > > > > >> > > > > upon.
> > > > > > >> > > > > Transaction: Ticket created by
> > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > >> > > > > Queue: met_help
> > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
Prestopnik
> > > > > > >> > > > > Owner: Nobody
> > > > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > >> > > > > Status: new
> > > > > > >> > > > > Ticket <URL:
> > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >> > > >
> > > > > > >> > > > >
> > > > > > >> > > > >
> > > > > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0
and
> > > > > > >> > > > > Anaconda
> > > > > 2.4.0.
> > > > > > >> The
> > > > > > >> > > user
> > > > > > >> > > > > asked for 8.1. I took notes last time, but
running
> > > > > > >> > > > > into
> > > > > > problems:
> > > > > > >> > > > >
> > > > > > >> > > > > MET Configuration settings...
> > > > > > >> > > > > export MET_FONT_DIR=/software/depot/met-
8.1/fonts
> > > > > > >> > > > > export
> > > > > > >> > > > >
> > > > > > >> >
> > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > 8.1/external_libs/include/freetype2
> > > > > > >> > > > > export
> > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export
> > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > >> > 2.4.0/include/python2.7
> > > > > > >> > > > > -I/software/depot/anaconda-
2.4.0/include/python2.7
> > > > > > >> > -fno-strict-aliasing
> > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
-Wstrict-
> > > > > > >> > > > > prototypes
> > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export
> > > > > > >> > > > >
> > > > > > >> > > >
> > > > > > >> > >
> > > > > > >> >
> > > > > > >>
> > > > > >
> > > > >
> > > > MET_TARBALL=/software/depot/met-
> > > > 8.1/tar_files//software/depot/met-
> > > > 8.1/tar_files.tar
> > > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export
> > > > > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > > > > >> > > > > export
> > > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
> > > > > > >> > > > > -lutil
> > > > > > >> > > > > -lm
> > > > > > >> -Xlinker
> > > > > > >> > > > > -export-dynamic
> > > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-
8.1
> > > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > >> > > > > ./configure --prefix=/software/depot/met-
8.1/met-
> > > > > > >> > > > > 8.1
> > > > > > >> --enable-grib2
> > > > > > >> > > > > --enable-modis --enable-mode_graphics --enable-
> > > > > > >> > > > > lidar2nc >
> > > > > > >> > > configure.log
> > > > > > >> > > > > 2> &1
> > > > > > >> > > > > configure returned with non-zero (127) status
> > > > > > >> > > > >
> > > > > > >> > > > >
> > > > > > >> > > >
> > > > > > >> > > >
> > > > > > >> > > >
> > > > > > >> > >
> > > > > > >> > >
> > > > > > >> > >
> > > > > > >> > >
> > > > > > >> >
> > > > > > >> >
> > > > > > >> >
> > > > > > >> >
> > > > > > >>
> > > > > > >>
> > > > > > >>
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > >
> > > >
> > >
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Thu May 16 16:46:32 2019
Maybe you can answer one question while I try to reinstall
everything. What features does 8.1
provide over 8.0?
Greg
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Thursday, May 16, 2019 2:46 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Would try this command at /software/depot/met-8.1/met-8.1/scripts
directory?
1. check the environtment variable LD_LIBRARY_PATH:
echo $LD_LIBRARY_PATH
2. Save LD_LIBRARY_PATH
setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
OR
export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
3. Set LD_LIBRARY_PATH without /software/depot/anaconda-2.4.0/lib
4. Check which libgfortran.so at /software/depot/met-8.1/met-
8.1/scripts directory.
ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran
OR
ldd ../bin/pb2nc | grep libgfortran
5. Check libgfortran version (should be libgfortran.so.3, not so.4)
6. Run the failed command manually at /software/depot/met-8.1/met-
8.1/scripts directory if libgfortran.so.3.
../src/tools/other/pb2nc/pb2nc \
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr \
../out/pb2nc/sample_pb.nc \
config/PB2NCConfig_G212 \
-v 2
7. Change back LD_LIBRARY_PATH
setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
OR
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
Cheers,
Howard
On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-grib2-support
> [ramos at lorenz bin]$ ldd modis_regrid
> linux-vdso.so.1 => (0x00007ffd599d5000)
> libpython2.7.so.1.0 => /software/depot/anaconda-
> 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003453800000)
> libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> libpng16.so.16 => /software/depot/met-
> 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> libz.so.1 => /software/depot/met-8.1/external_libs/lib/libz.so.1
> (0x00007f7f19af4000)
> libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> libnetcdf_c++4.so.1 => /software/depot/met-
> 8.1/external_libs/lib/libnetcdf_c++4.so.1 (0x00007f7f198a6000)
> libnetcdf.so.11 => /software/depot/met-
> 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> libgsl.so.19 => /software/depot/met-
> 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> libgslcblas.so.0 => /software/depot/met-
> 8.1/external_libs/lib/libgslcblas.so.0 (0x00007f7f18eeb000)
> libjpeg.so.9 => /software/depot/anaconda-2.4.0/lib/libjpeg.so.9
> (0x00007f7f18c99000)
> libstdc++.so.6 => /software/depot/anaconda-
2.4.0/lib/libstdc++.so.6
> (0x00007f7f18b58000)
> libgcc_s.so.1 => /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> (0x00007f7f18b42000)
> libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> libhdf5_hl.so.10 => /software/depot/met-
> 8.1/external_libs/lib/libhdf5_hl.so.10 (0x00007f7f18922000)
> libhdf5.so.10 => /software/depot/met-
> 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> [ramos at lorenz bin]$
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 16, 2019 1:35 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> MET is expecting "libpython2.7.so" to enable python support.
>
> A log message shows the python was not enabled. Is python supporting
> is critical?
>
> ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-grib2
> --enable-modis --enable-mode_graphics --enable-lidar2nc >
> configure.log 2>&1
>
> If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> 1. Make sure python is not enabled
> no "--enable-python" option for ./configure
> 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> 3. Remove "/software/depot/anaconda-2.4.0/lib" from
LD_LIBRARY_PATH
> at the build time and runtime both.
>
> Cheers,
> Howard
>
> On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > I was able to compile Met 8.0 on our Cray with:
> >
> > ramos at leo1:~> gcc --version
> > gcc (GCC) 7.3.0 20180125 (Cray Inc.)
> > Copyright (C) 2017 Free Software Foundation, Inc.
> > This is free software; see the source for copying conditions.
There
> > is NO
> > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> > PURPOSE.
> >
> > ramos at leo1:~> gfortran --version
> > GNU Fortran (GCC) 7.3.0 20180125 (Cray Inc.)
> > Copyright (C) 2017 Free Software Foundation, Inc.
> > This is free software; see the source for copying conditions.
There
> > is NO
> > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
> > PURPOSE.
> >
> > ramos at leo1:~>
> >
> > We don't have that version on our Red Hat systems. Met 8.0 worked
on
> > RH, but 8.1 failed on the 'make test'. The user says she is fine
with
> > the executables so far. I will have to build a gfortran 7.x
version.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, May 16, 2019 1:11 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Hello,
> >
> > Is gcc/gfortran 7.x compiler available?
> >
> > The problem was caused by the path for python library
> > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4 exists
there
> > from the ldd output. It was used on building MET. MET was compiled
> > with gcc 4.4.7 which supports only libgfortran.so.3, and linked
with
> > libgfortran.so.4 because of MET_PYTHON_LD configuration. Some
> > libraries do not support the backward compatibility.
libgfortran.so
> > is
> > one of them. In this case, the compiler version and library
version
> > should match.
> >
> > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-8.1/bin/pb2nc
|grep
> > gfortran
> > libgfortran.so.4 => /software/depot/anaconda-
> > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> >
> > export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-
dynamic
> >
> > The solution is compiling third party libraries and MET with
version
> > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
libgfortran.so.5,
> > So the same problem will happen if MET is built with gcc/gfortran
6.x
> > or gcc/gfortran 8.x.
> >
> > Cheers,
> > Howard
> >
> > On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > Attached is the config.log for NetCDf it shows /usr/bin/gcc
> > >
> > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat version.
> > >
> > > -----Original Message-----
> > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > Sent: Monday, May 13, 2019 4:44 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > Prestopnik
> > >
> > > Thank you. Unfortunately, that does not tell me if the
libraries
> > > and
> > > the
> > > MET code were built with the same version of the compiler. I
also
> > > do
> > > not
> > > see bufrlib in that list.
> > >
> > > Can you please tell me - were the libraries and the MET code
built
> > > with the
> > > same version of the compiler? I'm checking to see if, for
example,
> > > the
> > > libraries were built with gcc-6.3.0 but the MET code was build
with
> > > gcc-4.4.7.
> > >
> > > Thanks!
> > >
> > > Julie
> > >
> > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory, Contractor,
> > > Code
> > > 7501.1
> > > via RT <met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
>
> > > >
> > > > You can see I am using those libraries for MET 8.1:
> > > >
> > > > [root at maury2 bin]# ldd modis_regrid
> > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > libpython2.7.so.1.0 =>
> > > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > > (0x00002ab75e1f3000)
> > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > (0x00002ab75e63b000)
> > > > libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> > > > libutil.so.1 => /lib64/libutil.so.1
(0x00002ab75ea5c000)
> > > > libpng16.so.16 =>
> > > > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > > > (0x00002ab75ec60000)
> > > > libz.so.1 => /software/depot/met-
> > > > 8.1/external_libs/lib/libz.so.1
> > > > (0x00002ab75ee92000)
> > > > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > > > libnetcdf_c++4.so.1 =>
> > > > /software/depot/met-8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > (0x00002ab75f32f000)
> > > > libnetcdf.so.11 =>
> > > > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > > > (0x00002ab75f57c000)
> > > > libgsl.so.19 =>
> > > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > > (0x00002ab75f8bb000)
> > > > libgslcblas.so.0 =>
> > > > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > > > (0x00002ab75fcfe000)
> > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > 2.4.0/lib/libjpeg.so.9
> > > > (0x00002ab75ff37000)
> > > > libstdc++.so.6 =>
> > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > (0x00002ab760189000)
> > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > 2.4.0/lib/libgcc_s.so.1
> > > > (0x00002ab7602cb000)
> > > > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > > > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > > > libhdf5_hl.so.10 =>
> > > > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > > > (0x00002ab760675000)
> > > > libhdf5.so.10 =>
> > > > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > > > (0x00002ab760894000)
> > > > librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> > > > [root at maury2 bin]#
> > > >
> > > > -----Original Message-----
> > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > Julie
> > > > Prestopnik
> > > >
> > > > Thank you, Greg. Can you please tell me - were the libraries
and
> > > > the
> > > > MET
> > > > code built with the same version of the compiler. I'm
checking
> > > > to
> > > > see if,
> > > > for example, the libraries were built with gcc-6.3.0 but the
MET
> > > > code
> > > > was
> > > > build with gcc-4.4.7.
> > > >
> > > > It sounds like we need the libraries and the MET code to be
built
> > > > with the
> > > > same version of the compiler, in this case.
> > > >
> > > > Thanks for any information you can provide.
> > > >
> > > > Julie
> > > >
> > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
Contractor,
> > > > Code
> > > > 7501.1
> > > > via RT <met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > > >
> > > > > Find the logs attached.
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > Julie
> > > > > Prestopnik
> > > > >
> > > > > Could you please run the following:
> > > > >
> > > > > which pb2nc
> > > > > ldd <full path to pb2nc> | grep gfortran
> > > > >
> > > > > and send me the output?
> > > > >
> > > > > Please also send your config.log and make.log file.
> > > > >
> > > > > Thank you!
> > > > >
> > > > > Julie
> > > > >
> > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
Contractor,
> > > > > Code
> > > > 7501.1
> > > > > via RT <met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >
> > > > > >
> > > > > > I used the buildscript. It should build all of the
external
> > > > > > libraries,
> > > > so
> > > > > > I believe everything was built with the same compiler.
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Hi Greg. Our developer suspects it may be a mismatched
> > > > compiler/library
> > > > > > version. Was BUFRLIB installed with the same compiler as
> > > > > > MET?
> > > > > > Also,
> > > > > what
> > > > > > version of BURRLIB are you using?
> > > > > >
> > > > > > Thanks,
> > > > > > Julie
> > > > > >
> > > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > > <jpresto at ucar.edu>
> > > > > > wrote:
> > > > > >
> > > > > > > Hi Greg. I am checking in with another developer
regarding
> > > > > > > the
> > > > > > > error
> > > > > you
> > > > > > > experienced. Thank you for your patience.
> > > > > > >
> > > > > > > Julie
> > > > > > >
> > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
> > > > > > > Contractor,
> > > > > > > Code
> > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > >>
> > > > > > >> <URL:
> > > > > > >> https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >> >
> > > > > > >>
> > > > > > >> I was able to build on Red Hat using:
> > > > > > >>
> > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > > > >> This is free software; see the source for copying
> > > > > > >> conditions.
> > > > > > >> There
> > > > > is
> > > > > > NO
> > > > > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > >> PARTICULAR
> > > > > > >> PURPOSE.
> > > > > > >>
> > > > > > >> [ramos at lorenz ~]$
> > > > > > >>
> > > > > > >> Not all of the tests passed, please see attachment.
> > > > > > >>
> > > > > > >> Greg
> > > > > > >>
> > > > > > >> -----Original Message-----
> > > > > > >> From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > >> 8.1
> > > > > > >> Julie
> > > > > > >> Prestopnik
> > > > > > >>
> > > > > > >> Thank you for letting me know. I will proceed with
trying
> > > > > > >> to
> > > > > reproduce
> > > > > > >> the
> > > > > > >> problem using the gcc-6.3.0. I will follow up once I
have
> > > > > > >> more
> > > > > > >> information.
> > > > > > >>
> > > > > > >> Julie
> > > > > > >>
> > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
> > > > > > >> Contractor,
> > > > > > >> Code
> > > > > > 7501.1
> > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > >>
> > > > > > >> >
> > > > > > >> > <URL:
> > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >> > >
> > > > > > >> >
> > > > > > >> > When I compiled MET 8.0 the last time, it worked. I
was
> > > > > > >> > also
> > > > > > >> > able
> > > > to
> > > > > > >> > compile 8.0 on out Cray:
> > > > > > >> >
> > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > >> > Password:
> > > > > > >> > Last login: Thu May 9 17:38:30 2019 from 199.9.0.18
> > > > > > >> >
> > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > >> > Running 132MB Suse 12.3
> > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > >> >
> > > > > > >> > You are accessing a U.S. Government (USG) Information
> > > > > > >> > System
> > > > > > >> > (IS)
> > > > > that
> > > > > > >> is
> > > > > > >> > provided for USG-authorized use only.
> > > > > > >> > By using this IS (which includes any device attached
to
> > > > > > >> > this
> > > > > > >> > IS),
> > > > > you
> > > > > > >> > consent to the following conditions:
> > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > >> > communications
> > > > > > >> > on
> > > > > > >> > this
> > > > IS
> > > > > > for
> > > > > > >> > purposes including, but not limited to,
> > > > > > >> > penetration testing, COMSEC monitoring, network
> > > > > > >> > operations
> > > > > > >> > and
> > > > > > defense,
> > > > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > > > >> > and counterintelligence (CI) investigations.
> > > > > > >> > -At any time, the USG may inspect and seize data
stored
> > > > > > >> > on
> > > > > > >> > this
> > > > IS.
> > > > > > >> > -Communications using, or data stored on, this IS are
> > > > > > >> > not
> > > > > > >> > private,
> > > > > are
> > > > > > >> > subject to routine monitoring, interception,
> > > > > > >> > and search, and may be disclosed or used for any USG-
> > > > > > >> > authorized
> > > > > > purpose.
> > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > >> > authentication
> > > > > > >> > and
> > > > access
> > > > > > >> > controls) to protect USG interests -- not for
> > > > > > >> > your personal benefit or privacy.
> > > > > > >> > -Notwithstanding the above, using this IS does not
> > > > > > >> > constitute
> > > > > consent
> > > > > > to
> > > > > > >> > PM, LE or CI investigative searching or
> > > > > > >> > monitoring of the content of privileged
communications,
> > > > > > >> > or
> > > > > > >> > work
> > > > > > product,
> > > > > > >> > related to personal representation or
> > > > > > >> > services by attorneys, psychotherapists, or clergy,
and
> > > > > > >> > their
> > > > > > >> assistants.
> > > > > > >> > Such communications and work product are
> > > > > > >> > private and confidential. See User Agreement for
> > > > > > >> > details.
> > > > > > >> >
> > > > > > >> > ramos at leo1:~> which gcc
> > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > >> > ramos at leo1:~>
> > > > > > >> >
> > > > > > >> > -----Original Message-----
> > > > > > >> > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > >> > 8.1
> > > > Julie
> > > > > > >> > Prestopnik
> > > > > > >> >
> > > > > > >> > Hi Gregory. I have not tested with version 6.3.0 of
the
> > > > > > >> > gcc
> > > > > compiler,
> > > > > > >> but
> > > > > > >> > rather only with lower versions (specifically 4.8.5).
> > > > > > >> > We
> > > > > > >> > would,
> > > > of
> > > > > > >> course,
> > > > > > >> > want our code to work with higher versions as well.
I
> > > > > > >> > have
> > > > > > >> > not
> > > > yet
> > > > > > had
> > > > > > >> an
> > > > > > >> > opportunity to test with a higher version like 6.3.0.
> > > > > > >> > Do
> > > > > > >> > you have
> > > > > the
> > > > > > >> > ability to compile MET using a lesser version of the
gcc
> > > > > > >> > compiler
> > > > to
> > > > > > >> see if
> > > > > > >> > that clears up the issues you are experiencing?
> > > > > > >> >
> > > > > > >> > Julie
> > > > > > >> >
> > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
> > > > > > >> > Contractor,
> > > > Code
> > > > > > >> 7501.1
> > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > >> >
> > > > > > >> > >
> > > > > > >> > > <URL:
> > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >> > > >
> > > > > > >> > >
> > > > > > >> > > Any updates or suggestions?
> > > > > > >> > >
> > > > > > >> > > Greg
> > > > > > >> > >
> > > > > > >> > > -----Original Message-----
> > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > >> > > MET
> > > > > > >> > > 8.1
> > > > > Julie
> > > > > > >> > > Prestopnik
> > > > > > >> > >
> > > > > > >> > > Hi Greg. Thank you for passing along your
config.log
> > > > > > >> > > file. I
> > > > > see a
> > > > > > >> > couple
> > > > > > >> > > of linker problems in there:
> > > > > > >> > >
> > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > >> > >
> > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > >> > >
> > > > > > >> > > Based on those errors, it looks like you may not
have
> > > > > > >> > > flex
> > > > > > >> > > and
> > > > > bison
> > > > > > >> > > installed. Please install those and try running
> > > > > > >> > > configure
> > > > again.
> > > > > > >> Please
> > > > > > >> > > let us know how it goes.
> > > > > > >> > >
> > > > > > >> > > Also, I just wanted to address one other thing. In
> > > > > > >> > > your
> > > > original
> > > > > > >> email
> > > > > > >> > you
> > > > > > >> > > listed the following as part of your "MET
> > > > > > >> > > Configuration
> > > > settings":
> > > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
-lutil
> > > > > > >> > > -lm
> > > > > -Xlinker
> > > > > > >> > > -export-dynamic
> > > > > > >> > >
> > > > > > >> > > However, in your config.log file it looks like
> > > > > > >> > > MET_PYTHON_LD was
> > > > > > >> actually
> > > > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
> > > > > > >> > > -lpython2.7
> > > > > > -lpthread
> > > > > > >> > -ldl
> > > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is
correct
> > > > > > >> > > because
> > > > you
> > > > > > >> need
> > > > > > >> > to
> > > > > > >> > > have that -L part in there, so I just want to
ensure
> > > > > > >> > > that
> > > > > > >> > > will
> > > > > stay
> > > > > > >> there
> > > > > > >> > > when you run configure again.
> > > > > > >> > >
> > > > > > >> > > Thanks,
> > > > > > >> > > Julie
> > > > > > >> > >
> > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr. Gregory,
> > > > > > >> > > Contractor,
> > > > > Code
> > > > > > >> > 7501.1
> > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > >> > >
> > > > > > >> > > >
> > > > > > >> > > > <URL:
> > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > >
> > > > > > >> > > >
> > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > >> > > >
> > > > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > >> > > >
> > > > > > >> > > >
> > > > > > >> > > > -----Original Message-----
> > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > >> > > > MET
> > > > > > >> > > > 8.1
> > > > > > Julie
> > > > > > >> > > > Prestopnik
> > > > > > >> > > >
> > > > > > >> > > > Hi Greg,
> > > > > > >> > > >
> > > > > > >> > > > I'll go ahead and assign this ticket to Julie,
and
> > > > > > >> > > > she
> > > > > > >> > > > should
> > > > be
> > > > > > >> > writing
> > > > > > >> > > > you back in the next couple of days.
> > > > > > >> > > >
> > > > > > >> > > > I do know she'll want to see both the
> > > > > > >> > > > "configure.log"
> > > > > > >> > > > file you
> > > > > > >> > generated
> > > > > > >> > > as
> > > > > > >> > > > well as the "config.log" file from that same
> > > > > > >> > > > directory.
> > > > > > >> > > > So
> > > > > please
> > > > > > >> send
> > > > > > >> > > > those along when you get a chance.
> > > > > > >> > > >
> > > > > > >> > > > Thanks,
> > > > > > >> > > > John
> > > > > > >> > > >
> > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr.
Gregory,
> > > > > > >> > > > Contractor,
> > > > > > Code
> > > > > > >> > > 7501.1
> > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > >> > > >
> > > > > > >> > > > >
> > > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was
acted
> > > > > > >> > > > > upon.
> > > > > > >> > > > > Transaction: Ticket created by
> > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > >> > > > > Queue: met_help
> > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
Prestopnik
> > > > > > >> > > > > Owner: Nobody
> > > > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > >> > > > > Status: new
> > > > > > >> > > > > Ticket <URL:
> > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >> > > >
> > > > > > >> > > > >
> > > > > > >> > > > >
> > > > > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0
and
> > > > > > >> > > > > Anaconda
> > > > > 2.4.0.
> > > > > > >> The
> > > > > > >> > > user
> > > > > > >> > > > > asked for 8.1. I took notes last time, but
running
> > > > > > >> > > > > into
> > > > > > problems:
> > > > > > >> > > > >
> > > > > > >> > > > > MET Configuration settings...
> > > > > > >> > > > > export MET_FONT_DIR=/software/depot/met-
8.1/fonts
> > > > > > >> > > > > export
> > > > > > >> > > > >
> > > > > > >> >
> > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > 8.1/external_libs/include/freetype2
> > > > > > >> > > > > export
> > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export
> > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > >> > 2.4.0/include/python2.7
> > > > > > >> > > > > -I/software/depot/anaconda-
2.4.0/include/python2.7
> > > > > > >> > -fno-strict-aliasing
> > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
-Wstrict-
> > > > > > >> > > > > prototypes
> > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export
> > > > > > >> > > > >
> > > > > > >> > > >
> > > > > > >> > >
> > > > > > >> >
> > > > > > >>
> > > > > >
> > > > >
> > > > MET_TARBALL=/software/depot/met-
> > > > 8.1/tar_files//software/depot/met-
> > > > 8.1/tar_files.tar
> > > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export
> > > > > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > > > > >> > > > > export
> > > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
> > > > > > >> > > > > -lutil
> > > > > > >> > > > > -lm
> > > > > > >> -Xlinker
> > > > > > >> > > > > -export-dynamic
> > > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs
> > > > > > >> > > > > export MET_SUBDIR=/software/depot/met-8.1/met-
8.1
> > > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > >> > > > > ./configure --prefix=/software/depot/met-
8.1/met-
> > > > > > >> > > > > 8.1
> > > > > > >> --enable-grib2
> > > > > > >> > > > > --enable-modis --enable-mode_graphics --enable-
> > > > > > >> > > > > lidar2nc >
> > > > > > >> > > configure.log
> > > > > > >> > > > > 2> &1
> > > > > > >> > > > > configure returned with non-zero (127) status
> > > > > > >> > > > >
> > > > > > >> > > > >
> > > > > > >> > > >
> > > > > > >> > > >
> > > > > > >> > > >
> > > > > > >> > >
> > > > > > >> > >
> > > > > > >> > >
> > > > > > >> > >
> > > > > > >> >
> > > > > > >> >
> > > > > > >> >
> > > > > > >> >
> > > > > > >>
> > > > > > >>
> > > > > > >>
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > >
> > > >
> > >
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Howard Soh
Time: Thu May 16 17:01:15 2019
No new tools but many enhancements.
It's available at
https://dtcenter.org/community-code/model-evaluation-tools-met/met-
version-8-1
Cheers,
Howard
On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> Maybe you can answer one question while I try to reinstall
> everything. What features does 8.1
> provide over 8.0?
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 16, 2019 2:46 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Would try this command at /software/depot/met-8.1/met-8.1/scripts
> directory?
>
> 1. check the environtment variable LD_LIBRARY_PATH:
> echo $LD_LIBRARY_PATH
>
> 2. Save LD_LIBRARY_PATH
> setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> OR
> export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
>
> 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-2.4.0/lib
>
> 4. Check which libgfortran.so at /software/depot/met-8.1/met-
> 8.1/scripts directory.
>
> ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran
> OR
> ldd ../bin/pb2nc | grep libgfortran
>
> 5. Check libgfortran version (should be libgfortran.so.3, not so.4)
>
> 6. Run the failed command manually at /software/depot/met-8.1/met-
> 8.1/scripts directory if libgfortran.so.3.
>
> ../src/tools/other/pb2nc/pb2nc \
>
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> \
> ../out/pb2nc/sample_pb.nc \
> config/PB2NCConfig_G212 \
> -v 2
>
> 7. Change back LD_LIBRARY_PATH
> setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> OR
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
>
> Cheers,
> Howard
>
>
> On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-grib2-support
> > [ramos at lorenz bin]$ ldd modis_regrid
> > linux-vdso.so.1 => (0x00007ffd599d5000)
> > libpython2.7.so.1.0 => /software/depot/anaconda-
> > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003453800000)
> > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> > libpng16.so.16 => /software/depot/met-
> > 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> > libz.so.1 => /software/depot/met-8.1/external_libs/lib/libz.so.1
> > (0x00007f7f19af4000)
> > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > libnetcdf_c++4.so.1 => /software/depot/met-
> > 8.1/external_libs/lib/libnetcdf_c++4.so.1 (0x00007f7f198a6000)
> > libnetcdf.so.11 => /software/depot/met-
> > 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> > libgsl.so.19 => /software/depot/met-
> > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > libgslcblas.so.0 => /software/depot/met-
> > 8.1/external_libs/lib/libgslcblas.so.0 (0x00007f7f18eeb000)
> > libjpeg.so.9 => /software/depot/anaconda-2.4.0/lib/libjpeg.so.9
> > (0x00007f7f18c99000)
> > libstdc++.so.6 => /software/depot/anaconda-
2.4.0/lib/libstdc++.so.6
> > (0x00007f7f18b58000)
> > libgcc_s.so.1 => /software/depot/anaconda-
2.4.0/lib/libgcc_s.so.1
> > (0x00007f7f18b42000)
> > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > libhdf5_hl.so.10 => /software/depot/met-
> > 8.1/external_libs/lib/libhdf5_hl.so.10 (0x00007f7f18922000)
> > libhdf5.so.10 => /software/depot/met-
> > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > [ramos at lorenz bin]$
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, May 16, 2019 1:35 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > MET is expecting "libpython2.7.so" to enable python support.
> >
> > A log message shows the python was not enabled. Is python
supporting
> > is critical?
> >
> > ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2
> > --enable-modis --enable-mode_graphics --enable-lidar2nc >
> > configure.log 2>&1
> >
> > If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> > 1. Make sure python is not enabled
> > no "--enable-python" option for ./configure
> > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
LD_LIBRARY_PATH
> > at the build time and runtime both.
> >
> > Cheers,
> > Howard
> >
> > On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > I was able to compile Met 8.0 on our Cray with:
> > >
> > > ramos at leo1:~> gcc --version
> > > gcc (GCC) 7.3.0 20180125 (Cray Inc.)
> > > Copyright (C) 2017 Free Software Foundation, Inc.
> > > This is free software; see the source for copying conditions.
> > > There
> > > is NO
> > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > > PURPOSE.
> > >
> > > ramos at leo1:~> gfortran --version
> > > GNU Fortran (GCC) 7.3.0 20180125 (Cray Inc.)
> > > Copyright (C) 2017 Free Software Foundation, Inc.
> > > This is free software; see the source for copying conditions.
> > > There
> > > is NO
> > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > > PURPOSE.
> > >
> > > ramos at leo1:~>
> > >
> > > We don't have that version on our Red Hat systems. Met 8.0
worked
> > > on
> > > RH, but 8.1 failed on the 'make test'. The user says she is fine
> > > with
> > > the executables so far. I will have to build a gfortran 7.x
> > > version.
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, May 16, 2019 1:11 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > Hello,
> > >
> > > Is gcc/gfortran 7.x compiler available?
> > >
> > > The problem was caused by the path for python library
> > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4 exists
there
> > > from the ldd output. It was used on building MET. MET was
compiled
> > > with gcc 4.4.7 which supports only libgfortran.so.3, and linked
> > > with
> > > libgfortran.so.4 because of MET_PYTHON_LD configuration. Some
> > > libraries do not support the backward compatibility.
libgfortran.so
> > > is
> > > one of them. In this case, the compiler version and library
version
> > > should match.
> > >
> > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-8.1/bin/pb2nc
> > > |grep
> > > gfortran
> > > libgfortran.so.4 => /software/depot/anaconda-
> > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > >
> > > export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-
> > > dynamic
> > >
> > > The solution is compiling third party libraries and MET with
> > > version
> > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > libgfortran.so.5,
> > > So the same problem will happen if MET is built with
gcc/gfortran
> > > 6.x
> > > or gcc/gfortran 8.x.
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Attached is the config.log for NetCDf it shows /usr/bin/gcc
> > > >
> > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat version.
> > > >
> > > > -----Original Message-----
> > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > Julie
> > > > Prestopnik
> > > >
> > > > Thank you. Unfortunately, that does not tell me if the
libraries
> > > > and
> > > > the
> > > > MET code were built with the same version of the compiler. I
> > > > also
> > > > do
> > > > not
> > > > see bufrlib in that list.
> > > >
> > > > Can you please tell me - were the libraries and the MET code
> > > > built
> > > > with the
> > > > same version of the compiler? I'm checking to see if, for
> > > > example,
> > > > the
> > > > libraries were built with gcc-6.3.0 but the MET code was build
> > > > with
> > > > gcc-4.4.7.
> > > >
> > > > Thanks!
> > > >
> > > > Julie
> > > >
> > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
Contractor,
> > > > Code
> > > > 7501.1
> > > > via RT <met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > > >
> > > > > You can see I am using those libraries for MET 8.1:
> > > > >
> > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > libpython2.7.so.1.0 =>
> > > > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > > > (0x00002ab75e1f3000)
> > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > (0x00002ab75e63b000)
> > > > > libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > (0x00002ab75ea5c000)
> > > > > libpng16.so.16 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > > > > (0x00002ab75ec60000)
> > > > > libz.so.1 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libz.so.1
> > > > > (0x00002ab75ee92000)
> > > > > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > > > > libnetcdf_c++4.so.1 =>
> > > > > /software/depot/met-
8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > (0x00002ab75f32f000)
> > > > > libnetcdf.so.11 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > > > > (0x00002ab75f57c000)
> > > > > libgsl.so.19 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > > > (0x00002ab75f8bb000)
> > > > > libgslcblas.so.0 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > > > > (0x00002ab75fcfe000)
> > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libjpeg.so.9
> > > > > (0x00002ab75ff37000)
> > > > > libstdc++.so.6 =>
> > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > (0x00002ab760189000)
> > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > (0x00002ab7602cb000)
> > > > > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > > > > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > > > > libhdf5_hl.so.10 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > (0x00002ab760675000)
> > > > > libhdf5.so.10 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > > > > (0x00002ab760894000)
> > > > > librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> > > > > [root at maury2 bin]#
> > > > >
> > > > > -----Original Message-----
> > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > Julie
> > > > > Prestopnik
> > > > >
> > > > > Thank you, Greg. Can you please tell me - were the
libraries
> > > > > and
> > > > > the
> > > > > MET
> > > > > code built with the same version of the compiler. I'm
checking
> > > > > to
> > > > > see if,
> > > > > for example, the libraries were built with gcc-6.3.0 but the
> > > > > MET
> > > > > code
> > > > > was
> > > > > build with gcc-4.4.7.
> > > > >
> > > > > It sounds like we need the libraries and the MET code to be
> > > > > built
> > > > > with the
> > > > > same version of the compiler, in this case.
> > > > >
> > > > > Thanks for any information you can provide.
> > > > >
> > > > > Julie
> > > > >
> > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
Contractor,
> > > > > Code
> > > > > 7501.1
> > > > > via RT <met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >
> > > > > >
> > > > > > Find the logs attached.
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Could you please run the following:
> > > > > >
> > > > > > which pb2nc
> > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > >
> > > > > > and send me the output?
> > > > > >
> > > > > > Please also send your config.log and make.log file.
> > > > > >
> > > > > > Thank you!
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
> > > > > > Contractor,
> > > > > > Code
> > > > > 7501.1
> > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
> > > > > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >
> > > > > > >
> > > > > > > I used the buildscript. It should build all of the
external
> > > > > > > libraries,
> > > > > so
> > > > > > > I believe everything was built with the same compiler.
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
> > > > > > > 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Hi Greg. Our developer suspects it may be a mismatched
> > > > > compiler/library
> > > > > > > version. Was BUFRLIB installed with the same compiler
as
> > > > > > > MET?
> > > > > > > Also,
> > > > > > what
> > > > > > > version of BURRLIB are you using?
> > > > > > >
> > > > > > > Thanks,
> > > > > > > Julie
> > > > > > >
> > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > > > <jpresto at ucar.edu>
> > > > > > > wrote:
> > > > > > >
> > > > > > > > Hi Greg. I am checking in with another developer
> > > > > > > > regarding
> > > > > > > > the
> > > > > > > > error
> > > > > > you
> > > > > > > > experienced. Thank you for your patience.
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
> > > > > > > > Contractor,
> > > > > > > > Code
> > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > >>
> > > > > > > >> <URL:
> > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >> >
> > > > > > > >>
> > > > > > > >> I was able to build on Red Hat using:
> > > > > > > >>
> > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > > > > >> This is free software; see the source for copying
> > > > > > > >> conditions.
> > > > > > > >> There
> > > > > > is
> > > > > > > NO
> > > > > > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR
A
> > > > > > > >> PARTICULAR
> > > > > > > >> PURPOSE.
> > > > > > > >>
> > > > > > > >> [ramos at lorenz ~]$
> > > > > > > >>
> > > > > > > >> Not all of the tests passed, please see attachment.
> > > > > > > >>
> > > > > > > >> Greg
> > > > > > > >>
> > > > > > > >> -----Original Message-----
> > > > > > > >> From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > >> 8.1
> > > > > > > >> Julie
> > > > > > > >> Prestopnik
> > > > > > > >>
> > > > > > > >> Thank you for letting me know. I will proceed with
> > > > > > > >> trying
> > > > > > > >> to
> > > > > > reproduce
> > > > > > > >> the
> > > > > > > >> problem using the gcc-6.3.0. I will follow up once I
> > > > > > > >> have
> > > > > > > >> more
> > > > > > > >> information.
> > > > > > > >>
> > > > > > > >> Julie
> > > > > > > >>
> > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
> > > > > > > >> Contractor,
> > > > > > > >> Code
> > > > > > > 7501.1
> > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > >>
> > > > > > > >> >
> > > > > > > >> > <URL:
> > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >> > >
> > > > > > > >> >
> > > > > > > >> > When I compiled MET 8.0 the last time, it worked. I
> > > > > > > >> > was
> > > > > > > >> > also
> > > > > > > >> > able
> > > > > to
> > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > >> >
> > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > >> > Password:
> > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
199.9.0.18
> > > > > > > >> >
> > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > >> >
> > > > > > > >> > You are accessing a U.S. Government (USG)
Information
> > > > > > > >> > System
> > > > > > > >> > (IS)
> > > > > > that
> > > > > > > >> is
> > > > > > > >> > provided for USG-authorized use only.
> > > > > > > >> > By using this IS (which includes any device
attached
> > > > > > > >> > to
> > > > > > > >> > this
> > > > > > > >> > IS),
> > > > > > you
> > > > > > > >> > consent to the following conditions:
> > > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > > >> > communications
> > > > > > > >> > on
> > > > > > > >> > this
> > > > > IS
> > > > > > > for
> > > > > > > >> > purposes including, but not limited to,
> > > > > > > >> > penetration testing, COMSEC monitoring, network
> > > > > > > >> > operations
> > > > > > > >> > and
> > > > > > > defense,
> > > > > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > > > > >> > and counterintelligence (CI) investigations.
> > > > > > > >> > -At any time, the USG may inspect and seize data
> > > > > > > >> > stored
> > > > > > > >> > on
> > > > > > > >> > this
> > > > > IS.
> > > > > > > >> > -Communications using, or data stored on, this IS
are
> > > > > > > >> > not
> > > > > > > >> > private,
> > > > > > are
> > > > > > > >> > subject to routine monitoring, interception,
> > > > > > > >> > and search, and may be disclosed or used for any
USG-
> > > > > > > >> > authorized
> > > > > > > purpose.
> > > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > > >> > authentication
> > > > > > > >> > and
> > > > > access
> > > > > > > >> > controls) to protect USG interests -- not for
> > > > > > > >> > your personal benefit or privacy.
> > > > > > > >> > -Notwithstanding the above, using this IS does not
> > > > > > > >> > constitute
> > > > > > consent
> > > > > > > to
> > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > >> > monitoring of the content of privileged
> > > > > > > >> > communications,
> > > > > > > >> > or
> > > > > > > >> > work
> > > > > > > product,
> > > > > > > >> > related to personal representation or
> > > > > > > >> > services by attorneys, psychotherapists, or clergy,
> > > > > > > >> > and
> > > > > > > >> > their
> > > > > > > >> assistants.
> > > > > > > >> > Such communications and work product are
> > > > > > > >> > private and confidential. See User Agreement for
> > > > > > > >> > details.
> > > > > > > >> >
> > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > >> > ramos at leo1:~>
> > > > > > > >> >
> > > > > > > >> > -----Original Message-----
> > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > >> > MET
> > > > > > > >> > 8.1
> > > > > Julie
> > > > > > > >> > Prestopnik
> > > > > > > >> >
> > > > > > > >> > Hi Gregory. I have not tested with version 6.3.0
of
> > > > > > > >> > the
> > > > > > > >> > gcc
> > > > > > compiler,
> > > > > > > >> but
> > > > > > > >> > rather only with lower versions (specifically
4.8.5).
> > > > > > > >> > We
> > > > > > > >> > would,
> > > > > of
> > > > > > > >> course,
> > > > > > > >> > want our code to work with higher versions as well.
I
> > > > > > > >> > have
> > > > > > > >> > not
> > > > > yet
> > > > > > > had
> > > > > > > >> an
> > > > > > > >> > opportunity to test with a higher version like
6.3.0.
> > > > > > > >> > Do
> > > > > > > >> > you have
> > > > > > the
> > > > > > > >> > ability to compile MET using a lesser version of
the
> > > > > > > >> > gcc
> > > > > > > >> > compiler
> > > > > to
> > > > > > > >> see if
> > > > > > > >> > that clears up the issues you are experiencing?
> > > > > > > >> >
> > > > > > > >> > Julie
> > > > > > > >> >
> > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
> > > > > > > >> > Contractor,
> > > > > Code
> > > > > > > >> 7501.1
> > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > >> >
> > > > > > > >> > >
> > > > > > > >> > > <URL:
> > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >> > > >
> > > > > > > >> > >
> > > > > > > >> > > Any updates or suggestions?
> > > > > > > >> > >
> > > > > > > >> > > Greg
> > > > > > > >> > >
> > > > > > > >> > > -----Original Message-----
> > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > >> > > MET
> > > > > > > >> > > 8.1
> > > > > > Julie
> > > > > > > >> > > Prestopnik
> > > > > > > >> > >
> > > > > > > >> > > Hi Greg. Thank you for passing along your
> > > > > > > >> > > config.log
> > > > > > > >> > > file. I
> > > > > > see a
> > > > > > > >> > couple
> > > > > > > >> > > of linker problems in there:
> > > > > > > >> > >
> > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > >> > >
> > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > >> > >
> > > > > > > >> > > Based on those errors, it looks like you may not
> > > > > > > >> > > have
> > > > > > > >> > > flex
> > > > > > > >> > > and
> > > > > > bison
> > > > > > > >> > > installed. Please install those and try running
> > > > > > > >> > > configure
> > > > > again.
> > > > > > > >> Please
> > > > > > > >> > > let us know how it goes.
> > > > > > > >> > >
> > > > > > > >> > > Also, I just wanted to address one other thing.
In
> > > > > > > >> > > your
> > > > > original
> > > > > > > >> email
> > > > > > > >> > you
> > > > > > > >> > > listed the following as part of your "MET
> > > > > > > >> > > Configuration
> > > > > settings":
> > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
> > > > > > > >> > > -lutil
> > > > > > > >> > > -lm
> > > > > > -Xlinker
> > > > > > > >> > > -export-dynamic
> > > > > > > >> > >
> > > > > > > >> > > However, in your config.log file it looks like
> > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > >> actually
> > > > > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
> > > > > > > >> > > -lpython2.7
> > > > > > > -lpthread
> > > > > > > >> > -ldl
> > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is
> > > > > > > >> > > correct
> > > > > > > >> > > because
> > > > > you
> > > > > > > >> need
> > > > > > > >> > to
> > > > > > > >> > > have that -L part in there, so I just want to
ensure
> > > > > > > >> > > that
> > > > > > > >> > > will
> > > > > > stay
> > > > > > > >> there
> > > > > > > >> > > when you run configure again.
> > > > > > > >> > >
> > > > > > > >> > > Thanks,
> > > > > > > >> > > Julie
> > > > > > > >> > >
> > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr.
Gregory,
> > > > > > > >> > > Contractor,
> > > > > > Code
> > > > > > > >> > 7501.1
> > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >> > >
> > > > > > > >> > > >
> > > > > > > >> > > > <URL:
> > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >
> > > > > > > >> > > >
> > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > >> > > >
> > > > > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > >> > > >
> > > > > > > >> > > >
> > > > > > > >> > > > -----Original Message-----
> > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > >> > > > regarding
> > > > > > > >> > > > MET
> > > > > > > >> > > > 8.1
> > > > > > > Julie
> > > > > > > >> > > > Prestopnik
> > > > > > > >> > > >
> > > > > > > >> > > > Hi Greg,
> > > > > > > >> > > >
> > > > > > > >> > > > I'll go ahead and assign this ticket to Julie,
and
> > > > > > > >> > > > she
> > > > > > > >> > > > should
> > > > > be
> > > > > > > >> > writing
> > > > > > > >> > > > you back in the next couple of days.
> > > > > > > >> > > >
> > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > >> > > > "configure.log"
> > > > > > > >> > > > file you
> > > > > > > >> > generated
> > > > > > > >> > > as
> > > > > > > >> > > > well as the "config.log" file from that same
> > > > > > > >> > > > directory.
> > > > > > > >> > > > So
> > > > > > please
> > > > > > > >> send
> > > > > > > >> > > > those along when you get a chance.
> > > > > > > >> > > >
> > > > > > > >> > > > Thanks,
> > > > > > > >> > > > John
> > > > > > > >> > > >
> > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr.
Gregory,
> > > > > > > >> > > > Contractor,
> > > > > > > Code
> > > > > > > >> > > 7501.1
> > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >> > > >
> > > > > > > >> > > > >
> > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was
> > > > > > > >> > > > > acted
> > > > > > > >> > > > > upon.
> > > > > > > >> > > > > Transaction: Ticket created by
> > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > >> > > > > Queue: met_help
> > > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
Prestopnik
> > > > > > > >> > > > > Owner: Nobody
> > > > > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > >> > > > > Status: new
> > > > > > > >> > > > > Ticket <URL:
> > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >> > > >
> > > > > > > >> > > > >
> > > > > > > >> > > > >
> > > > > > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0
and
> > > > > > > >> > > > > Anaconda
> > > > > > 2.4.0.
> > > > > > > >> The
> > > > > > > >> > > user
> > > > > > > >> > > > > asked for 8.1. I took notes last time, but
> > > > > > > >> > > > > running
> > > > > > > >> > > > > into
> > > > > > > problems:
> > > > > > > >> > > > >
> > > > > > > >> > > > > MET Configuration settings...
> > > > > > > >> > > > > export MET_FONT_DIR=/software/depot/met-
> > > > > > > >> > > > > 8.1/fonts
> > > > > > > >> > > > > export
> > > > > > > >> > > > >
> > > > > > > >> >
> > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > >> > > > > export
> > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export
> > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > >> > -fno-strict-aliasing
> > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
> > > > > > > >> > > > > -Wstrict-
> > > > > > > >> > > > > prototypes
> > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export
> > > > > > > >> > > > >
> > > > > > > >> > > >
> > > > > > > >> > >
> > > > > > > >> >
> > > > > > > >>
> > > > > > >
> > > > > >
> > > > > MET_TARBALL=/software/depot/met-
> > > > > 8.1/tar_files//software/depot/met-
> > > > > 8.1/tar_files.tar
> > > > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export
> > > > > > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > > > > > >> > > > > export
> > > > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread
-ldl
> > > > > > > >> > > > > -lutil
> > > > > > > >> > > > > -lm
> > > > > > > >> -Xlinker
> > > > > > > >> > > > > -export-dynamic
> > > > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export MET_SUBDIR=/software/depot/met-
8.1/met-
> > > > > > > >> > > > > 8.1
> > > > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > >> > > > > ./configure --prefix=/software/depot/met-
> > > > > > > >> > > > > 8.1/met-
> > > > > > > >> > > > > 8.1
> > > > > > > >> --enable-grib2
> > > > > > > >> > > > > --enable-modis --enable-mode_graphics
--enable-
> > > > > > > >> > > > > lidar2nc >
> > > > > > > >> > > configure.log
> > > > > > > >> > > > > 2> &1
> > > > > > > >> > > > > configure returned with non-zero (127) status
> > > > > > > >> > > > >
> > > > > > > >> > > > >
> > > > > > > >> > > >
> > > > > > > >> > > >
> > > > > > > >> > > >
> > > > > > > >> > >
> > > > > > > >> > >
> > > > > > > >> > >
> > > > > > > >> > >
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >>
> > > > > > > >>
> > > > > > > >>
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > >
> > > > >
> > > >
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Thu May 16 17:08:50 2019
OK, thank. I email back after I rebuild.
Greg
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Thursday, May 16, 2019 4:01 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
No new tools but many enhancements.
It's available at
https://dtcenter.org/community-code/model-evaluation-tools-met/met-
version-8-1
Cheers,
Howard
On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> Maybe you can answer one question while I try to reinstall
> everything. What features does 8.1
> provide over 8.0?
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 16, 2019 2:46 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Would try this command at /software/depot/met-8.1/met-8.1/scripts
> directory?
>
> 1. check the environtment variable LD_LIBRARY_PATH:
> echo $LD_LIBRARY_PATH
>
> 2. Save LD_LIBRARY_PATH
> setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> OR
> export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
>
> 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-2.4.0/lib
>
> 4. Check which libgfortran.so at /software/depot/met-8.1/met-
> 8.1/scripts directory.
>
> ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran
> OR
> ldd ../bin/pb2nc | grep libgfortran
>
> 5. Check libgfortran version (should be libgfortran.so.3, not so.4)
>
> 6. Run the failed command manually at /software/depot/met-8.1/met-
> 8.1/scripts directory if libgfortran.so.3.
>
> ../src/tools/other/pb2nc/pb2nc \
>
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> \
> ../out/pb2nc/sample_pb.nc \
> config/PB2NCConfig_G212 \
> -v 2
>
> 7. Change back LD_LIBRARY_PATH
> setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> OR
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
>
> Cheers,
> Howard
>
>
> On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-grib2-support
> > [ramos at lorenz bin]$ ldd modis_regrid
> > linux-vdso.so.1 => (0x00007ffd599d5000)
> > libpython2.7.so.1.0 => /software/depot/anaconda-
> > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003453800000)
> > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> > libpng16.so.16 => /software/depot/met-
> > 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> > libz.so.1 => /software/depot/met-8.1/external_libs/lib/libz.so.1
> > (0x00007f7f19af4000)
> > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > libnetcdf_c++4.so.1 => /software/depot/met-
> > 8.1/external_libs/lib/libnetcdf_c++4.so.1 (0x00007f7f198a6000)
> > libnetcdf.so.11 => /software/depot/met-
> > 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> > libgsl.so.19 => /software/depot/met-
> > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > libgslcblas.so.0 => /software/depot/met-
> > 8.1/external_libs/lib/libgslcblas.so.0 (0x00007f7f18eeb000)
> > libjpeg.so.9 => /software/depot/anaconda-2.4.0/lib/libjpeg.so.9
> > (0x00007f7f18c99000)
> > libstdc++.so.6 => /software/depot/anaconda-
2.4.0/lib/libstdc++.so.6
> > (0x00007f7f18b58000)
> > libgcc_s.so.1 => /software/depot/anaconda-
2.4.0/lib/libgcc_s.so.1
> > (0x00007f7f18b42000)
> > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > libhdf5_hl.so.10 => /software/depot/met-
> > 8.1/external_libs/lib/libhdf5_hl.so.10 (0x00007f7f18922000)
> > libhdf5.so.10 => /software/depot/met-
> > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > [ramos at lorenz bin]$
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, May 16, 2019 1:35 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > MET is expecting "libpython2.7.so" to enable python support.
> >
> > A log message shows the python was not enabled. Is python
supporting
> > is critical?
> >
> > ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2
> > --enable-modis --enable-mode_graphics --enable-lidar2nc >
> > configure.log 2>&1
> >
> > If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> > 1. Make sure python is not enabled
> > no "--enable-python" option for ./configure
> > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
LD_LIBRARY_PATH
> > at the build time and runtime both.
> >
> > Cheers,
> > Howard
> >
> > On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > I was able to compile Met 8.0 on our Cray with:
> > >
> > > ramos at leo1:~> gcc --version
> > > gcc (GCC) 7.3.0 20180125 (Cray Inc.)
> > > Copyright (C) 2017 Free Software Foundation, Inc.
> > > This is free software; see the source for copying conditions.
> > > There
> > > is NO
> > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > > PURPOSE.
> > >
> > > ramos at leo1:~> gfortran --version
> > > GNU Fortran (GCC) 7.3.0 20180125 (Cray Inc.)
> > > Copyright (C) 2017 Free Software Foundation, Inc.
> > > This is free software; see the source for copying conditions.
> > > There
> > > is NO
> > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > > PURPOSE.
> > >
> > > ramos at leo1:~>
> > >
> > > We don't have that version on our Red Hat systems. Met 8.0
worked
> > > on
> > > RH, but 8.1 failed on the 'make test'. The user says she is fine
> > > with
> > > the executables so far. I will have to build a gfortran 7.x
> > > version.
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, May 16, 2019 1:11 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > Hello,
> > >
> > > Is gcc/gfortran 7.x compiler available?
> > >
> > > The problem was caused by the path for python library
> > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4 exists
there
> > > from the ldd output. It was used on building MET. MET was
compiled
> > > with gcc 4.4.7 which supports only libgfortran.so.3, and linked
> > > with
> > > libgfortran.so.4 because of MET_PYTHON_LD configuration. Some
> > > libraries do not support the backward compatibility.
libgfortran.so
> > > is
> > > one of them. In this case, the compiler version and library
version
> > > should match.
> > >
> > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-8.1/bin/pb2nc
> > > |grep
> > > gfortran
> > > libgfortran.so.4 => /software/depot/anaconda-
> > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > >
> > > export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-
> > > dynamic
> > >
> > > The solution is compiling third party libraries and MET with
> > > version
> > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > libgfortran.so.5,
> > > So the same problem will happen if MET is built with
gcc/gfortran
> > > 6.x
> > > or gcc/gfortran 8.x.
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Attached is the config.log for NetCDf it shows /usr/bin/gcc
> > > >
> > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat version.
> > > >
> > > > -----Original Message-----
> > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > Julie
> > > > Prestopnik
> > > >
> > > > Thank you. Unfortunately, that does not tell me if the
libraries
> > > > and
> > > > the
> > > > MET code were built with the same version of the compiler. I
> > > > also
> > > > do
> > > > not
> > > > see bufrlib in that list.
> > > >
> > > > Can you please tell me - were the libraries and the MET code
> > > > built
> > > > with the
> > > > same version of the compiler? I'm checking to see if, for
> > > > example,
> > > > the
> > > > libraries were built with gcc-6.3.0 but the MET code was build
> > > > with
> > > > gcc-4.4.7.
> > > >
> > > > Thanks!
> > > >
> > > > Julie
> > > >
> > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
Contractor,
> > > > Code
> > > > 7501.1
> > > > via RT <met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > > >
> > > > > You can see I am using those libraries for MET 8.1:
> > > > >
> > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > libpython2.7.so.1.0 =>
> > > > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > > > (0x00002ab75e1f3000)
> > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > (0x00002ab75e63b000)
> > > > > libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > (0x00002ab75ea5c000)
> > > > > libpng16.so.16 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > > > > (0x00002ab75ec60000)
> > > > > libz.so.1 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libz.so.1
> > > > > (0x00002ab75ee92000)
> > > > > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > > > > libnetcdf_c++4.so.1 =>
> > > > > /software/depot/met-
8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > (0x00002ab75f32f000)
> > > > > libnetcdf.so.11 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > > > > (0x00002ab75f57c000)
> > > > > libgsl.so.19 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > > > (0x00002ab75f8bb000)
> > > > > libgslcblas.so.0 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > > > > (0x00002ab75fcfe000)
> > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libjpeg.so.9
> > > > > (0x00002ab75ff37000)
> > > > > libstdc++.so.6 =>
> > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > (0x00002ab760189000)
> > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > (0x00002ab7602cb000)
> > > > > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > > > > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > > > > libhdf5_hl.so.10 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > (0x00002ab760675000)
> > > > > libhdf5.so.10 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > > > > (0x00002ab760894000)
> > > > > librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> > > > > [root at maury2 bin]#
> > > > >
> > > > > -----Original Message-----
> > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > Julie
> > > > > Prestopnik
> > > > >
> > > > > Thank you, Greg. Can you please tell me - were the
libraries
> > > > > and
> > > > > the
> > > > > MET
> > > > > code built with the same version of the compiler. I'm
checking
> > > > > to
> > > > > see if,
> > > > > for example, the libraries were built with gcc-6.3.0 but the
> > > > > MET
> > > > > code
> > > > > was
> > > > > build with gcc-4.4.7.
> > > > >
> > > > > It sounds like we need the libraries and the MET code to be
> > > > > built
> > > > > with the
> > > > > same version of the compiler, in this case.
> > > > >
> > > > > Thanks for any information you can provide.
> > > > >
> > > > > Julie
> > > > >
> > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
Contractor,
> > > > > Code
> > > > > 7501.1
> > > > > via RT <met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >
> > > > > >
> > > > > > Find the logs attached.
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Could you please run the following:
> > > > > >
> > > > > > which pb2nc
> > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > >
> > > > > > and send me the output?
> > > > > >
> > > > > > Please also send your config.log and make.log file.
> > > > > >
> > > > > > Thank you!
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
> > > > > > Contractor,
> > > > > > Code
> > > > > 7501.1
> > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
> > > > > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >
> > > > > > >
> > > > > > > I used the buildscript. It should build all of the
external
> > > > > > > libraries,
> > > > > so
> > > > > > > I believe everything was built with the same compiler.
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
> > > > > > > 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Hi Greg. Our developer suspects it may be a mismatched
> > > > > compiler/library
> > > > > > > version. Was BUFRLIB installed with the same compiler
as
> > > > > > > MET?
> > > > > > > Also,
> > > > > > what
> > > > > > > version of BURRLIB are you using?
> > > > > > >
> > > > > > > Thanks,
> > > > > > > Julie
> > > > > > >
> > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > > > <jpresto at ucar.edu>
> > > > > > > wrote:
> > > > > > >
> > > > > > > > Hi Greg. I am checking in with another developer
> > > > > > > > regarding
> > > > > > > > the
> > > > > > > > error
> > > > > > you
> > > > > > > > experienced. Thank you for your patience.
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
> > > > > > > > Contractor,
> > > > > > > > Code
> > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > >>
> > > > > > > >> <URL:
> > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >> >
> > > > > > > >>
> > > > > > > >> I was able to build on Red Hat using:
> > > > > > > >>
> > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > > > > >> This is free software; see the source for copying
> > > > > > > >> conditions.
> > > > > > > >> There
> > > > > > is
> > > > > > > NO
> > > > > > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR
A
> > > > > > > >> PARTICULAR
> > > > > > > >> PURPOSE.
> > > > > > > >>
> > > > > > > >> [ramos at lorenz ~]$
> > > > > > > >>
> > > > > > > >> Not all of the tests passed, please see attachment.
> > > > > > > >>
> > > > > > > >> Greg
> > > > > > > >>
> > > > > > > >> -----Original Message-----
> > > > > > > >> From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > >> 8.1
> > > > > > > >> Julie
> > > > > > > >> Prestopnik
> > > > > > > >>
> > > > > > > >> Thank you for letting me know. I will proceed with
> > > > > > > >> trying
> > > > > > > >> to
> > > > > > reproduce
> > > > > > > >> the
> > > > > > > >> problem using the gcc-6.3.0. I will follow up once I
> > > > > > > >> have
> > > > > > > >> more
> > > > > > > >> information.
> > > > > > > >>
> > > > > > > >> Julie
> > > > > > > >>
> > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
> > > > > > > >> Contractor,
> > > > > > > >> Code
> > > > > > > 7501.1
> > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > >>
> > > > > > > >> >
> > > > > > > >> > <URL:
> > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >> > >
> > > > > > > >> >
> > > > > > > >> > When I compiled MET 8.0 the last time, it worked. I
> > > > > > > >> > was
> > > > > > > >> > also
> > > > > > > >> > able
> > > > > to
> > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > >> >
> > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > >> > Password:
> > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
199.9.0.18
> > > > > > > >> >
> > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > >> >
> > > > > > > >> > You are accessing a U.S. Government (USG)
Information
> > > > > > > >> > System
> > > > > > > >> > (IS)
> > > > > > that
> > > > > > > >> is
> > > > > > > >> > provided for USG-authorized use only.
> > > > > > > >> > By using this IS (which includes any device
attached
> > > > > > > >> > to
> > > > > > > >> > this
> > > > > > > >> > IS),
> > > > > > you
> > > > > > > >> > consent to the following conditions:
> > > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > > >> > communications
> > > > > > > >> > on
> > > > > > > >> > this
> > > > > IS
> > > > > > > for
> > > > > > > >> > purposes including, but not limited to,
> > > > > > > >> > penetration testing, COMSEC monitoring, network
> > > > > > > >> > operations
> > > > > > > >> > and
> > > > > > > defense,
> > > > > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > > > > >> > and counterintelligence (CI) investigations.
> > > > > > > >> > -At any time, the USG may inspect and seize data
> > > > > > > >> > stored
> > > > > > > >> > on
> > > > > > > >> > this
> > > > > IS.
> > > > > > > >> > -Communications using, or data stored on, this IS
are
> > > > > > > >> > not
> > > > > > > >> > private,
> > > > > > are
> > > > > > > >> > subject to routine monitoring, interception,
> > > > > > > >> > and search, and may be disclosed or used for any
USG-
> > > > > > > >> > authorized
> > > > > > > purpose.
> > > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > > >> > authentication
> > > > > > > >> > and
> > > > > access
> > > > > > > >> > controls) to protect USG interests -- not for
> > > > > > > >> > your personal benefit or privacy.
> > > > > > > >> > -Notwithstanding the above, using this IS does not
> > > > > > > >> > constitute
> > > > > > consent
> > > > > > > to
> > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > >> > monitoring of the content of privileged
> > > > > > > >> > communications,
> > > > > > > >> > or
> > > > > > > >> > work
> > > > > > > product,
> > > > > > > >> > related to personal representation or
> > > > > > > >> > services by attorneys, psychotherapists, or clergy,
> > > > > > > >> > and
> > > > > > > >> > their
> > > > > > > >> assistants.
> > > > > > > >> > Such communications and work product are
> > > > > > > >> > private and confidential. See User Agreement for
> > > > > > > >> > details.
> > > > > > > >> >
> > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > >> > ramos at leo1:~>
> > > > > > > >> >
> > > > > > > >> > -----Original Message-----
> > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > >> > MET
> > > > > > > >> > 8.1
> > > > > Julie
> > > > > > > >> > Prestopnik
> > > > > > > >> >
> > > > > > > >> > Hi Gregory. I have not tested with version 6.3.0
of
> > > > > > > >> > the
> > > > > > > >> > gcc
> > > > > > compiler,
> > > > > > > >> but
> > > > > > > >> > rather only with lower versions (specifically
4.8.5).
> > > > > > > >> > We
> > > > > > > >> > would,
> > > > > of
> > > > > > > >> course,
> > > > > > > >> > want our code to work with higher versions as well.
I
> > > > > > > >> > have
> > > > > > > >> > not
> > > > > yet
> > > > > > > had
> > > > > > > >> an
> > > > > > > >> > opportunity to test with a higher version like
6.3.0.
> > > > > > > >> > Do
> > > > > > > >> > you have
> > > > > > the
> > > > > > > >> > ability to compile MET using a lesser version of
the
> > > > > > > >> > gcc
> > > > > > > >> > compiler
> > > > > to
> > > > > > > >> see if
> > > > > > > >> > that clears up the issues you are experiencing?
> > > > > > > >> >
> > > > > > > >> > Julie
> > > > > > > >> >
> > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
> > > > > > > >> > Contractor,
> > > > > Code
> > > > > > > >> 7501.1
> > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > >> >
> > > > > > > >> > >
> > > > > > > >> > > <URL:
> > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >> > > >
> > > > > > > >> > >
> > > > > > > >> > > Any updates or suggestions?
> > > > > > > >> > >
> > > > > > > >> > > Greg
> > > > > > > >> > >
> > > > > > > >> > > -----Original Message-----
> > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > >> > > MET
> > > > > > > >> > > 8.1
> > > > > > Julie
> > > > > > > >> > > Prestopnik
> > > > > > > >> > >
> > > > > > > >> > > Hi Greg. Thank you for passing along your
> > > > > > > >> > > config.log
> > > > > > > >> > > file. I
> > > > > > see a
> > > > > > > >> > couple
> > > > > > > >> > > of linker problems in there:
> > > > > > > >> > >
> > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > >> > >
> > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > >> > >
> > > > > > > >> > > Based on those errors, it looks like you may not
> > > > > > > >> > > have
> > > > > > > >> > > flex
> > > > > > > >> > > and
> > > > > > bison
> > > > > > > >> > > installed. Please install those and try running
> > > > > > > >> > > configure
> > > > > again.
> > > > > > > >> Please
> > > > > > > >> > > let us know how it goes.
> > > > > > > >> > >
> > > > > > > >> > > Also, I just wanted to address one other thing.
In
> > > > > > > >> > > your
> > > > > original
> > > > > > > >> email
> > > > > > > >> > you
> > > > > > > >> > > listed the following as part of your "MET
> > > > > > > >> > > Configuration
> > > > > settings":
> > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
> > > > > > > >> > > -lutil
> > > > > > > >> > > -lm
> > > > > > -Xlinker
> > > > > > > >> > > -export-dynamic
> > > > > > > >> > >
> > > > > > > >> > > However, in your config.log file it looks like
> > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > >> actually
> > > > > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
> > > > > > > >> > > -lpython2.7
> > > > > > > -lpthread
> > > > > > > >> > -ldl
> > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is
> > > > > > > >> > > correct
> > > > > > > >> > > because
> > > > > you
> > > > > > > >> need
> > > > > > > >> > to
> > > > > > > >> > > have that -L part in there, so I just want to
ensure
> > > > > > > >> > > that
> > > > > > > >> > > will
> > > > > > stay
> > > > > > > >> there
> > > > > > > >> > > when you run configure again.
> > > > > > > >> > >
> > > > > > > >> > > Thanks,
> > > > > > > >> > > Julie
> > > > > > > >> > >
> > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr.
Gregory,
> > > > > > > >> > > Contractor,
> > > > > > Code
> > > > > > > >> > 7501.1
> > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >> > >
> > > > > > > >> > > >
> > > > > > > >> > > > <URL:
> > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >
> > > > > > > >> > > >
> > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > >> > > >
> > > > > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > >> > > >
> > > > > > > >> > > >
> > > > > > > >> > > > -----Original Message-----
> > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > >> > > > regarding
> > > > > > > >> > > > MET
> > > > > > > >> > > > 8.1
> > > > > > > Julie
> > > > > > > >> > > > Prestopnik
> > > > > > > >> > > >
> > > > > > > >> > > > Hi Greg,
> > > > > > > >> > > >
> > > > > > > >> > > > I'll go ahead and assign this ticket to Julie,
and
> > > > > > > >> > > > she
> > > > > > > >> > > > should
> > > > > be
> > > > > > > >> > writing
> > > > > > > >> > > > you back in the next couple of days.
> > > > > > > >> > > >
> > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > >> > > > "configure.log"
> > > > > > > >> > > > file you
> > > > > > > >> > generated
> > > > > > > >> > > as
> > > > > > > >> > > > well as the "config.log" file from that same
> > > > > > > >> > > > directory.
> > > > > > > >> > > > So
> > > > > > please
> > > > > > > >> send
> > > > > > > >> > > > those along when you get a chance.
> > > > > > > >> > > >
> > > > > > > >> > > > Thanks,
> > > > > > > >> > > > John
> > > > > > > >> > > >
> > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr.
Gregory,
> > > > > > > >> > > > Contractor,
> > > > > > > Code
> > > > > > > >> > > 7501.1
> > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >> > > >
> > > > > > > >> > > > >
> > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was
> > > > > > > >> > > > > acted
> > > > > > > >> > > > > upon.
> > > > > > > >> > > > > Transaction: Ticket created by
> > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > >> > > > > Queue: met_help
> > > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
Prestopnik
> > > > > > > >> > > > > Owner: Nobody
> > > > > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > >> > > > > Status: new
> > > > > > > >> > > > > Ticket <URL:
> > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >> > > >
> > > > > > > >> > > > >
> > > > > > > >> > > > >
> > > > > > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0
and
> > > > > > > >> > > > > Anaconda
> > > > > > 2.4.0.
> > > > > > > >> The
> > > > > > > >> > > user
> > > > > > > >> > > > > asked for 8.1. I took notes last time, but
> > > > > > > >> > > > > running
> > > > > > > >> > > > > into
> > > > > > > problems:
> > > > > > > >> > > > >
> > > > > > > >> > > > > MET Configuration settings...
> > > > > > > >> > > > > export MET_FONT_DIR=/software/depot/met-
> > > > > > > >> > > > > 8.1/fonts
> > > > > > > >> > > > > export
> > > > > > > >> > > > >
> > > > > > > >> >
> > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > >> > > > > export
> > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export
> > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > >> > -fno-strict-aliasing
> > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
> > > > > > > >> > > > > -Wstrict-
> > > > > > > >> > > > > prototypes
> > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export
> > > > > > > >> > > > >
> > > > > > > >> > > >
> > > > > > > >> > >
> > > > > > > >> >
> > > > > > > >>
> > > > > > >
> > > > > >
> > > > > MET_TARBALL=/software/depot/met-
> > > > > 8.1/tar_files//software/depot/met-
> > > > > 8.1/tar_files.tar
> > > > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export
> > > > > > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > > > > > >> > > > > export
> > > > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread
-ldl
> > > > > > > >> > > > > -lutil
> > > > > > > >> > > > > -lm
> > > > > > > >> -Xlinker
> > > > > > > >> > > > > -export-dynamic
> > > > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export MET_SUBDIR=/software/depot/met-
8.1/met-
> > > > > > > >> > > > > 8.1
> > > > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > >> > > > > ./configure --prefix=/software/depot/met-
> > > > > > > >> > > > > 8.1/met-
> > > > > > > >> > > > > 8.1
> > > > > > > >> --enable-grib2
> > > > > > > >> > > > > --enable-modis --enable-mode_graphics
--enable-
> > > > > > > >> > > > > lidar2nc >
> > > > > > > >> > > configure.log
> > > > > > > >> > > > > 2> &1
> > > > > > > >> > > > > configure returned with non-zero (127) status
> > > > > > > >> > > > >
> > > > > > > >> > > > >
> > > > > > > >> > > >
> > > > > > > >> > > >
> > > > > > > >> > > >
> > > > > > > >> > >
> > > > > > > >> > >
> > > > > > > >> > >
> > > > > > > >> > >
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >>
> > > > > > > >>
> > > > > > > >>
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > >
> > > > >
> > > >
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Thu May 16 21:43:00 2019
I attempted to rebuild everything. The libraries when cleaning, but
not MET. Attached is the make.log.
Greg
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Thursday, May 16, 2019 4:01 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
No new tools but many enhancements.
It's available at
https://dtcenter.org/community-code/model-evaluation-tools-met/met-
version-8-1
Cheers,
Howard
On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> Maybe you can answer one question while I try to reinstall
> everything. What features does 8.1
> provide over 8.0?
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 16, 2019 2:46 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Would try this command at /software/depot/met-8.1/met-8.1/scripts
> directory?
>
> 1. check the environtment variable LD_LIBRARY_PATH:
> echo $LD_LIBRARY_PATH
>
> 2. Save LD_LIBRARY_PATH
> setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> OR
> export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
>
> 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-2.4.0/lib
>
> 4. Check which libgfortran.so at /software/depot/met-8.1/met-
> 8.1/scripts directory.
>
> ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran
> OR
> ldd ../bin/pb2nc | grep libgfortran
>
> 5. Check libgfortran version (should be libgfortran.so.3, not so.4)
>
> 6. Run the failed command manually at /software/depot/met-8.1/met-
> 8.1/scripts directory if libgfortran.so.3.
>
> ../src/tools/other/pb2nc/pb2nc \
>
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> \
> ../out/pb2nc/sample_pb.nc \
> config/PB2NCConfig_G212 \
> -v 2
>
> 7. Change back LD_LIBRARY_PATH
> setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> OR
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
>
> Cheers,
> Howard
>
>
> On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-grib2-support
> > [ramos at lorenz bin]$ ldd modis_regrid
> > linux-vdso.so.1 => (0x00007ffd599d5000)
> > libpython2.7.so.1.0 => /software/depot/anaconda-
> > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003453800000)
> > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> > libpng16.so.16 => /software/depot/met-
> > 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> > libz.so.1 => /software/depot/met-8.1/external_libs/lib/libz.so.1
> > (0x00007f7f19af4000)
> > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > libnetcdf_c++4.so.1 => /software/depot/met-
> > 8.1/external_libs/lib/libnetcdf_c++4.so.1 (0x00007f7f198a6000)
> > libnetcdf.so.11 => /software/depot/met-
> > 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> > libgsl.so.19 => /software/depot/met-
> > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > libgslcblas.so.0 => /software/depot/met-
> > 8.1/external_libs/lib/libgslcblas.so.0 (0x00007f7f18eeb000)
> > libjpeg.so.9 => /software/depot/anaconda-2.4.0/lib/libjpeg.so.9
> > (0x00007f7f18c99000)
> > libstdc++.so.6 => /software/depot/anaconda-
2.4.0/lib/libstdc++.so.6
> > (0x00007f7f18b58000)
> > libgcc_s.so.1 => /software/depot/anaconda-
2.4.0/lib/libgcc_s.so.1
> > (0x00007f7f18b42000)
> > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > libhdf5_hl.so.10 => /software/depot/met-
> > 8.1/external_libs/lib/libhdf5_hl.so.10 (0x00007f7f18922000)
> > libhdf5.so.10 => /software/depot/met-
> > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > [ramos at lorenz bin]$
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, May 16, 2019 1:35 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > MET is expecting "libpython2.7.so" to enable python support.
> >
> > A log message shows the python was not enabled. Is python
supporting
> > is critical?
> >
> > ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2
> > --enable-modis --enable-mode_graphics --enable-lidar2nc >
> > configure.log 2>&1
> >
> > If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> > 1. Make sure python is not enabled
> > no "--enable-python" option for ./configure
> > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
LD_LIBRARY_PATH
> > at the build time and runtime both.
> >
> > Cheers,
> > Howard
> >
> > On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > I was able to compile Met 8.0 on our Cray with:
> > >
> > > ramos at leo1:~> gcc --version
> > > gcc (GCC) 7.3.0 20180125 (Cray Inc.)
> > > Copyright (C) 2017 Free Software Foundation, Inc.
> > > This is free software; see the source for copying conditions.
> > > There
> > > is NO
> > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > > PURPOSE.
> > >
> > > ramos at leo1:~> gfortran --version
> > > GNU Fortran (GCC) 7.3.0 20180125 (Cray Inc.)
> > > Copyright (C) 2017 Free Software Foundation, Inc.
> > > This is free software; see the source for copying conditions.
> > > There
> > > is NO
> > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > > PURPOSE.
> > >
> > > ramos at leo1:~>
> > >
> > > We don't have that version on our Red Hat systems. Met 8.0
worked
> > > on
> > > RH, but 8.1 failed on the 'make test'. The user says she is fine
> > > with
> > > the executables so far. I will have to build a gfortran 7.x
> > > version.
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, May 16, 2019 1:11 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > Hello,
> > >
> > > Is gcc/gfortran 7.x compiler available?
> > >
> > > The problem was caused by the path for python library
> > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4 exists
there
> > > from the ldd output. It was used on building MET. MET was
compiled
> > > with gcc 4.4.7 which supports only libgfortran.so.3, and linked
> > > with
> > > libgfortran.so.4 because of MET_PYTHON_LD configuration. Some
> > > libraries do not support the backward compatibility.
libgfortran.so
> > > is
> > > one of them. In this case, the compiler version and library
version
> > > should match.
> > >
> > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-8.1/bin/pb2nc
> > > |grep
> > > gfortran
> > > libgfortran.so.4 => /software/depot/anaconda-
> > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > >
> > > export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-
> > > dynamic
> > >
> > > The solution is compiling third party libraries and MET with
> > > version
> > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > libgfortran.so.5,
> > > So the same problem will happen if MET is built with
gcc/gfortran
> > > 6.x
> > > or gcc/gfortran 8.x.
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Attached is the config.log for NetCDf it shows /usr/bin/gcc
> > > >
> > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat version.
> > > >
> > > > -----Original Message-----
> > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > Julie
> > > > Prestopnik
> > > >
> > > > Thank you. Unfortunately, that does not tell me if the
libraries
> > > > and
> > > > the
> > > > MET code were built with the same version of the compiler. I
> > > > also
> > > > do
> > > > not
> > > > see bufrlib in that list.
> > > >
> > > > Can you please tell me - were the libraries and the MET code
> > > > built
> > > > with the
> > > > same version of the compiler? I'm checking to see if, for
> > > > example,
> > > > the
> > > > libraries were built with gcc-6.3.0 but the MET code was build
> > > > with
> > > > gcc-4.4.7.
> > > >
> > > > Thanks!
> > > >
> > > > Julie
> > > >
> > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
Contractor,
> > > > Code
> > > > 7501.1
> > > > via RT <met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > > >
> > > > > You can see I am using those libraries for MET 8.1:
> > > > >
> > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > libpython2.7.so.1.0 =>
> > > > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > > > (0x00002ab75e1f3000)
> > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > (0x00002ab75e63b000)
> > > > > libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > (0x00002ab75ea5c000)
> > > > > libpng16.so.16 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > > > > (0x00002ab75ec60000)
> > > > > libz.so.1 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libz.so.1
> > > > > (0x00002ab75ee92000)
> > > > > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > > > > libnetcdf_c++4.so.1 =>
> > > > > /software/depot/met-
8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > (0x00002ab75f32f000)
> > > > > libnetcdf.so.11 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > > > > (0x00002ab75f57c000)
> > > > > libgsl.so.19 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > > > (0x00002ab75f8bb000)
> > > > > libgslcblas.so.0 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > > > > (0x00002ab75fcfe000)
> > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libjpeg.so.9
> > > > > (0x00002ab75ff37000)
> > > > > libstdc++.so.6 =>
> > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > (0x00002ab760189000)
> > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > (0x00002ab7602cb000)
> > > > > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > > > > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > > > > libhdf5_hl.so.10 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > (0x00002ab760675000)
> > > > > libhdf5.so.10 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > > > > (0x00002ab760894000)
> > > > > librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> > > > > [root at maury2 bin]#
> > > > >
> > > > > -----Original Message-----
> > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > Julie
> > > > > Prestopnik
> > > > >
> > > > > Thank you, Greg. Can you please tell me - were the
libraries
> > > > > and
> > > > > the
> > > > > MET
> > > > > code built with the same version of the compiler. I'm
checking
> > > > > to
> > > > > see if,
> > > > > for example, the libraries were built with gcc-6.3.0 but the
> > > > > MET
> > > > > code
> > > > > was
> > > > > build with gcc-4.4.7.
> > > > >
> > > > > It sounds like we need the libraries and the MET code to be
> > > > > built
> > > > > with the
> > > > > same version of the compiler, in this case.
> > > > >
> > > > > Thanks for any information you can provide.
> > > > >
> > > > > Julie
> > > > >
> > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
Contractor,
> > > > > Code
> > > > > 7501.1
> > > > > via RT <met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >
> > > > > >
> > > > > > Find the logs attached.
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Could you please run the following:
> > > > > >
> > > > > > which pb2nc
> > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > >
> > > > > > and send me the output?
> > > > > >
> > > > > > Please also send your config.log and make.log file.
> > > > > >
> > > > > > Thank you!
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
> > > > > > Contractor,
> > > > > > Code
> > > > > 7501.1
> > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
> > > > > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >
> > > > > > >
> > > > > > > I used the buildscript. It should build all of the
external
> > > > > > > libraries,
> > > > > so
> > > > > > > I believe everything was built with the same compiler.
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
> > > > > > > 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Hi Greg. Our developer suspects it may be a mismatched
> > > > > compiler/library
> > > > > > > version. Was BUFRLIB installed with the same compiler
as
> > > > > > > MET?
> > > > > > > Also,
> > > > > > what
> > > > > > > version of BURRLIB are you using?
> > > > > > >
> > > > > > > Thanks,
> > > > > > > Julie
> > > > > > >
> > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > > > <jpresto at ucar.edu>
> > > > > > > wrote:
> > > > > > >
> > > > > > > > Hi Greg. I am checking in with another developer
> > > > > > > > regarding
> > > > > > > > the
> > > > > > > > error
> > > > > > you
> > > > > > > > experienced. Thank you for your patience.
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
> > > > > > > > Contractor,
> > > > > > > > Code
> > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > >>
> > > > > > > >> <URL:
> > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >> >
> > > > > > > >>
> > > > > > > >> I was able to build on Red Hat using:
> > > > > > > >>
> > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > > > > >> This is free software; see the source for copying
> > > > > > > >> conditions.
> > > > > > > >> There
> > > > > > is
> > > > > > > NO
> > > > > > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR
A
> > > > > > > >> PARTICULAR
> > > > > > > >> PURPOSE.
> > > > > > > >>
> > > > > > > >> [ramos at lorenz ~]$
> > > > > > > >>
> > > > > > > >> Not all of the tests passed, please see attachment.
> > > > > > > >>
> > > > > > > >> Greg
> > > > > > > >>
> > > > > > > >> -----Original Message-----
> > > > > > > >> From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > >> 8.1
> > > > > > > >> Julie
> > > > > > > >> Prestopnik
> > > > > > > >>
> > > > > > > >> Thank you for letting me know. I will proceed with
> > > > > > > >> trying
> > > > > > > >> to
> > > > > > reproduce
> > > > > > > >> the
> > > > > > > >> problem using the gcc-6.3.0. I will follow up once I
> > > > > > > >> have
> > > > > > > >> more
> > > > > > > >> information.
> > > > > > > >>
> > > > > > > >> Julie
> > > > > > > >>
> > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
> > > > > > > >> Contractor,
> > > > > > > >> Code
> > > > > > > 7501.1
> > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > >>
> > > > > > > >> >
> > > > > > > >> > <URL:
> > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >> > >
> > > > > > > >> >
> > > > > > > >> > When I compiled MET 8.0 the last time, it worked. I
> > > > > > > >> > was
> > > > > > > >> > also
> > > > > > > >> > able
> > > > > to
> > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > >> >
> > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > >> > Password:
> > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
199.9.0.18
> > > > > > > >> >
> > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > >> >
> > > > > > > >> > You are accessing a U.S. Government (USG)
Information
> > > > > > > >> > System
> > > > > > > >> > (IS)
> > > > > > that
> > > > > > > >> is
> > > > > > > >> > provided for USG-authorized use only.
> > > > > > > >> > By using this IS (which includes any device
attached
> > > > > > > >> > to
> > > > > > > >> > this
> > > > > > > >> > IS),
> > > > > > you
> > > > > > > >> > consent to the following conditions:
> > > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > > >> > communications
> > > > > > > >> > on
> > > > > > > >> > this
> > > > > IS
> > > > > > > for
> > > > > > > >> > purposes including, but not limited to,
> > > > > > > >> > penetration testing, COMSEC monitoring, network
> > > > > > > >> > operations
> > > > > > > >> > and
> > > > > > > defense,
> > > > > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > > > > >> > and counterintelligence (CI) investigations.
> > > > > > > >> > -At any time, the USG may inspect and seize data
> > > > > > > >> > stored
> > > > > > > >> > on
> > > > > > > >> > this
> > > > > IS.
> > > > > > > >> > -Communications using, or data stored on, this IS
are
> > > > > > > >> > not
> > > > > > > >> > private,
> > > > > > are
> > > > > > > >> > subject to routine monitoring, interception,
> > > > > > > >> > and search, and may be disclosed or used for any
USG-
> > > > > > > >> > authorized
> > > > > > > purpose.
> > > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > > >> > authentication
> > > > > > > >> > and
> > > > > access
> > > > > > > >> > controls) to protect USG interests -- not for
> > > > > > > >> > your personal benefit or privacy.
> > > > > > > >> > -Notwithstanding the above, using this IS does not
> > > > > > > >> > constitute
> > > > > > consent
> > > > > > > to
> > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > >> > monitoring of the content of privileged
> > > > > > > >> > communications,
> > > > > > > >> > or
> > > > > > > >> > work
> > > > > > > product,
> > > > > > > >> > related to personal representation or
> > > > > > > >> > services by attorneys, psychotherapists, or clergy,
> > > > > > > >> > and
> > > > > > > >> > their
> > > > > > > >> assistants.
> > > > > > > >> > Such communications and work product are
> > > > > > > >> > private and confidential. See User Agreement for
> > > > > > > >> > details.
> > > > > > > >> >
> > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > >> > ramos at leo1:~>
> > > > > > > >> >
> > > > > > > >> > -----Original Message-----
> > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > >> > MET
> > > > > > > >> > 8.1
> > > > > Julie
> > > > > > > >> > Prestopnik
> > > > > > > >> >
> > > > > > > >> > Hi Gregory. I have not tested with version 6.3.0
of
> > > > > > > >> > the
> > > > > > > >> > gcc
> > > > > > compiler,
> > > > > > > >> but
> > > > > > > >> > rather only with lower versions (specifically
4.8.5).
> > > > > > > >> > We
> > > > > > > >> > would,
> > > > > of
> > > > > > > >> course,
> > > > > > > >> > want our code to work with higher versions as well.
I
> > > > > > > >> > have
> > > > > > > >> > not
> > > > > yet
> > > > > > > had
> > > > > > > >> an
> > > > > > > >> > opportunity to test with a higher version like
6.3.0.
> > > > > > > >> > Do
> > > > > > > >> > you have
> > > > > > the
> > > > > > > >> > ability to compile MET using a lesser version of
the
> > > > > > > >> > gcc
> > > > > > > >> > compiler
> > > > > to
> > > > > > > >> see if
> > > > > > > >> > that clears up the issues you are experiencing?
> > > > > > > >> >
> > > > > > > >> > Julie
> > > > > > > >> >
> > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
> > > > > > > >> > Contractor,
> > > > > Code
> > > > > > > >> 7501.1
> > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > >> >
> > > > > > > >> > >
> > > > > > > >> > > <URL:
> > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >> > > >
> > > > > > > >> > >
> > > > > > > >> > > Any updates or suggestions?
> > > > > > > >> > >
> > > > > > > >> > > Greg
> > > > > > > >> > >
> > > > > > > >> > > -----Original Message-----
> > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > >> > > MET
> > > > > > > >> > > 8.1
> > > > > > Julie
> > > > > > > >> > > Prestopnik
> > > > > > > >> > >
> > > > > > > >> > > Hi Greg. Thank you for passing along your
> > > > > > > >> > > config.log
> > > > > > > >> > > file. I
> > > > > > see a
> > > > > > > >> > couple
> > > > > > > >> > > of linker problems in there:
> > > > > > > >> > >
> > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > >> > >
> > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > >> > >
> > > > > > > >> > > Based on those errors, it looks like you may not
> > > > > > > >> > > have
> > > > > > > >> > > flex
> > > > > > > >> > > and
> > > > > > bison
> > > > > > > >> > > installed. Please install those and try running
> > > > > > > >> > > configure
> > > > > again.
> > > > > > > >> Please
> > > > > > > >> > > let us know how it goes.
> > > > > > > >> > >
> > > > > > > >> > > Also, I just wanted to address one other thing.
In
> > > > > > > >> > > your
> > > > > original
> > > > > > > >> email
> > > > > > > >> > you
> > > > > > > >> > > listed the following as part of your "MET
> > > > > > > >> > > Configuration
> > > > > settings":
> > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
> > > > > > > >> > > -lutil
> > > > > > > >> > > -lm
> > > > > > -Xlinker
> > > > > > > >> > > -export-dynamic
> > > > > > > >> > >
> > > > > > > >> > > However, in your config.log file it looks like
> > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > >> actually
> > > > > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
> > > > > > > >> > > -lpython2.7
> > > > > > > -lpthread
> > > > > > > >> > -ldl
> > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is
> > > > > > > >> > > correct
> > > > > > > >> > > because
> > > > > you
> > > > > > > >> need
> > > > > > > >> > to
> > > > > > > >> > > have that -L part in there, so I just want to
ensure
> > > > > > > >> > > that
> > > > > > > >> > > will
> > > > > > stay
> > > > > > > >> there
> > > > > > > >> > > when you run configure again.
> > > > > > > >> > >
> > > > > > > >> > > Thanks,
> > > > > > > >> > > Julie
> > > > > > > >> > >
> > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr.
Gregory,
> > > > > > > >> > > Contractor,
> > > > > > Code
> > > > > > > >> > 7501.1
> > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >> > >
> > > > > > > >> > > >
> > > > > > > >> > > > <URL:
> > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >
> > > > > > > >> > > >
> > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > >> > > >
> > > > > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > >> > > >
> > > > > > > >> > > >
> > > > > > > >> > > > -----Original Message-----
> > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > >> > > > regarding
> > > > > > > >> > > > MET
> > > > > > > >> > > > 8.1
> > > > > > > Julie
> > > > > > > >> > > > Prestopnik
> > > > > > > >> > > >
> > > > > > > >> > > > Hi Greg,
> > > > > > > >> > > >
> > > > > > > >> > > > I'll go ahead and assign this ticket to Julie,
and
> > > > > > > >> > > > she
> > > > > > > >> > > > should
> > > > > be
> > > > > > > >> > writing
> > > > > > > >> > > > you back in the next couple of days.
> > > > > > > >> > > >
> > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > >> > > > "configure.log"
> > > > > > > >> > > > file you
> > > > > > > >> > generated
> > > > > > > >> > > as
> > > > > > > >> > > > well as the "config.log" file from that same
> > > > > > > >> > > > directory.
> > > > > > > >> > > > So
> > > > > > please
> > > > > > > >> send
> > > > > > > >> > > > those along when you get a chance.
> > > > > > > >> > > >
> > > > > > > >> > > > Thanks,
> > > > > > > >> > > > John
> > > > > > > >> > > >
> > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr.
Gregory,
> > > > > > > >> > > > Contractor,
> > > > > > > Code
> > > > > > > >> > > 7501.1
> > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >> > > >
> > > > > > > >> > > > >
> > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was
> > > > > > > >> > > > > acted
> > > > > > > >> > > > > upon.
> > > > > > > >> > > > > Transaction: Ticket created by
> > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > >> > > > > Queue: met_help
> > > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
Prestopnik
> > > > > > > >> > > > > Owner: Nobody
> > > > > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > >> > > > > Status: new
> > > > > > > >> > > > > Ticket <URL:
> > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >> > > >
> > > > > > > >> > > > >
> > > > > > > >> > > > >
> > > > > > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0
and
> > > > > > > >> > > > > Anaconda
> > > > > > 2.4.0.
> > > > > > > >> The
> > > > > > > >> > > user
> > > > > > > >> > > > > asked for 8.1. I took notes last time, but
> > > > > > > >> > > > > running
> > > > > > > >> > > > > into
> > > > > > > problems:
> > > > > > > >> > > > >
> > > > > > > >> > > > > MET Configuration settings...
> > > > > > > >> > > > > export MET_FONT_DIR=/software/depot/met-
> > > > > > > >> > > > > 8.1/fonts
> > > > > > > >> > > > > export
> > > > > > > >> > > > >
> > > > > > > >> >
> > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > >> > > > > export
> > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export
> > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > >> > -fno-strict-aliasing
> > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
> > > > > > > >> > > > > -Wstrict-
> > > > > > > >> > > > > prototypes
> > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export
> > > > > > > >> > > > >
> > > > > > > >> > > >
> > > > > > > >> > >
> > > > > > > >> >
> > > > > > > >>
> > > > > > >
> > > > > >
> > > > > MET_TARBALL=/software/depot/met-
> > > > > 8.1/tar_files//software/depot/met-
> > > > > 8.1/tar_files.tar
> > > > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export
> > > > > > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > > > > > >> > > > > export
> > > > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread
-ldl
> > > > > > > >> > > > > -lutil
> > > > > > > >> > > > > -lm
> > > > > > > >> -Xlinker
> > > > > > > >> > > > > -export-dynamic
> > > > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export MET_SUBDIR=/software/depot/met-
8.1/met-
> > > > > > > >> > > > > 8.1
> > > > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > >> > > > > ./configure --prefix=/software/depot/met-
> > > > > > > >> > > > > 8.1/met-
> > > > > > > >> > > > > 8.1
> > > > > > > >> --enable-grib2
> > > > > > > >> > > > > --enable-modis --enable-mode_graphics
--enable-
> > > > > > > >> > > > > lidar2nc >
> > > > > > > >> > > configure.log
> > > > > > > >> > > > > 2> &1
> > > > > > > >> > > > > configure returned with non-zero (127) status
> > > > > > > >> > > > >
> > > > > > > >> > > > >
> > > > > > > >> > > >
> > > > > > > >> > > >
> > > > > > > >> > > >
> > > > > > > >> > >
> > > > > > > >> > >
> > > > > > > >> > >
> > > > > > > >> > >
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >>
> > > > > > > >>
> > > > > > > >>
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > >
> > > > >
> > > >
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Tue May 21 18:21:25 2019
Did new external libraries need to be built with 8.1?
Greg
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Thursday, May 16, 2019 4:01 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
No new tools but many enhancements.
It's available at
https://dtcenter.org/community-code/model-evaluation-tools-met/met-
version-8-1
Cheers,
Howard
On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> Maybe you can answer one question while I try to reinstall
> everything. What features does 8.1
> provide over 8.0?
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 16, 2019 2:46 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Would try this command at /software/depot/met-8.1/met-8.1/scripts
> directory?
>
> 1. check the environtment variable LD_LIBRARY_PATH:
> echo $LD_LIBRARY_PATH
>
> 2. Save LD_LIBRARY_PATH
> setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> OR
> export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
>
> 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-2.4.0/lib
>
> 4. Check which libgfortran.so at /software/depot/met-8.1/met-
> 8.1/scripts directory.
>
> ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran
> OR
> ldd ../bin/pb2nc | grep libgfortran
>
> 5. Check libgfortran version (should be libgfortran.so.3, not so.4)
>
> 6. Run the failed command manually at /software/depot/met-8.1/met-
> 8.1/scripts directory if libgfortran.so.3.
>
> ../src/tools/other/pb2nc/pb2nc \
>
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> \
> ../out/pb2nc/sample_pb.nc \
> config/PB2NCConfig_G212 \
> -v 2
>
> 7. Change back LD_LIBRARY_PATH
> setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> OR
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
>
> Cheers,
> Howard
>
>
> On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-grib2-support
> > [ramos at lorenz bin]$ ldd modis_regrid
> > linux-vdso.so.1 => (0x00007ffd599d5000)
> > libpython2.7.so.1.0 => /software/depot/anaconda-
> > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003453800000)
> > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> > libpng16.so.16 => /software/depot/met-
> > 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> > libz.so.1 => /software/depot/met-8.1/external_libs/lib/libz.so.1
> > (0x00007f7f19af4000)
> > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > libnetcdf_c++4.so.1 => /software/depot/met-
> > 8.1/external_libs/lib/libnetcdf_c++4.so.1 (0x00007f7f198a6000)
> > libnetcdf.so.11 => /software/depot/met-
> > 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> > libgsl.so.19 => /software/depot/met-
> > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > libgslcblas.so.0 => /software/depot/met-
> > 8.1/external_libs/lib/libgslcblas.so.0 (0x00007f7f18eeb000)
> > libjpeg.so.9 => /software/depot/anaconda-2.4.0/lib/libjpeg.so.9
> > (0x00007f7f18c99000)
> > libstdc++.so.6 => /software/depot/anaconda-
2.4.0/lib/libstdc++.so.6
> > (0x00007f7f18b58000)
> > libgcc_s.so.1 => /software/depot/anaconda-
2.4.0/lib/libgcc_s.so.1
> > (0x00007f7f18b42000)
> > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > libhdf5_hl.so.10 => /software/depot/met-
> > 8.1/external_libs/lib/libhdf5_hl.so.10 (0x00007f7f18922000)
> > libhdf5.so.10 => /software/depot/met-
> > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > [ramos at lorenz bin]$
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, May 16, 2019 1:35 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > MET is expecting "libpython2.7.so" to enable python support.
> >
> > A log message shows the python was not enabled. Is python
supporting
> > is critical?
> >
> > ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2
> > --enable-modis --enable-mode_graphics --enable-lidar2nc >
> > configure.log 2>&1
> >
> > If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> > 1. Make sure python is not enabled
> > no "--enable-python" option for ./configure
> > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
LD_LIBRARY_PATH
> > at the build time and runtime both.
> >
> > Cheers,
> > Howard
> >
> > On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > I was able to compile Met 8.0 on our Cray with:
> > >
> > > ramos at leo1:~> gcc --version
> > > gcc (GCC) 7.3.0 20180125 (Cray Inc.)
> > > Copyright (C) 2017 Free Software Foundation, Inc.
> > > This is free software; see the source for copying conditions.
> > > There
> > > is NO
> > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > > PURPOSE.
> > >
> > > ramos at leo1:~> gfortran --version
> > > GNU Fortran (GCC) 7.3.0 20180125 (Cray Inc.)
> > > Copyright (C) 2017 Free Software Foundation, Inc.
> > > This is free software; see the source for copying conditions.
> > > There
> > > is NO
> > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR
> > > PURPOSE.
> > >
> > > ramos at leo1:~>
> > >
> > > We don't have that version on our Red Hat systems. Met 8.0
worked
> > > on
> > > RH, but 8.1 failed on the 'make test'. The user says she is fine
> > > with
> > > the executables so far. I will have to build a gfortran 7.x
> > > version.
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, May 16, 2019 1:11 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > Hello,
> > >
> > > Is gcc/gfortran 7.x compiler available?
> > >
> > > The problem was caused by the path for python library
> > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4 exists
there
> > > from the ldd output. It was used on building MET. MET was
compiled
> > > with gcc 4.4.7 which supports only libgfortran.so.3, and linked
> > > with
> > > libgfortran.so.4 because of MET_PYTHON_LD configuration. Some
> > > libraries do not support the backward compatibility.
libgfortran.so
> > > is
> > > one of them. In this case, the compiler version and library
version
> > > should match.
> > >
> > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-8.1/bin/pb2nc
> > > |grep
> > > gfortran
> > > libgfortran.so.4 => /software/depot/anaconda-
> > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > >
> > > export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-
> > > dynamic
> > >
> > > The solution is compiling third party libraries and MET with
> > > version
> > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > libgfortran.so.5,
> > > So the same problem will happen if MET is built with
gcc/gfortran
> > > 6.x
> > > or gcc/gfortran 8.x.
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Attached is the config.log for NetCDf it shows /usr/bin/gcc
> > > >
> > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat version.
> > > >
> > > > -----Original Message-----
> > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > Julie
> > > > Prestopnik
> > > >
> > > > Thank you. Unfortunately, that does not tell me if the
libraries
> > > > and
> > > > the
> > > > MET code were built with the same version of the compiler. I
> > > > also
> > > > do
> > > > not
> > > > see bufrlib in that list.
> > > >
> > > > Can you please tell me - were the libraries and the MET code
> > > > built
> > > > with the
> > > > same version of the compiler? I'm checking to see if, for
> > > > example,
> > > > the
> > > > libraries were built with gcc-6.3.0 but the MET code was build
> > > > with
> > > > gcc-4.4.7.
> > > >
> > > > Thanks!
> > > >
> > > > Julie
> > > >
> > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
Contractor,
> > > > Code
> > > > 7501.1
> > > > via RT <met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091 >
> > > > >
> > > > > You can see I am using those libraries for MET 8.1:
> > > > >
> > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > libpython2.7.so.1.0 =>
> > > > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > > > (0x00002ab75e1f3000)
> > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > (0x00002ab75e63b000)
> > > > > libdl.so.2 => /lib64/libdl.so.2 (0x00002ab75e858000)
> > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > (0x00002ab75ea5c000)
> > > > > libpng16.so.16 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > > > > (0x00002ab75ec60000)
> > > > > libz.so.1 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libz.so.1
> > > > > (0x00002ab75ee92000)
> > > > > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > > > > libnetcdf_c++4.so.1 =>
> > > > > /software/depot/met-
8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > (0x00002ab75f32f000)
> > > > > libnetcdf.so.11 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > > > > (0x00002ab75f57c000)
> > > > > libgsl.so.19 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > > > (0x00002ab75f8bb000)
> > > > > libgslcblas.so.0 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > > > > (0x00002ab75fcfe000)
> > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libjpeg.so.9
> > > > > (0x00002ab75ff37000)
> > > > > libstdc++.so.6 =>
> > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > (0x00002ab760189000)
> > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > (0x00002ab7602cb000)
> > > > > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > > > > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > > > > libhdf5_hl.so.10 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > (0x00002ab760675000)
> > > > > libhdf5.so.10 =>
> > > > > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > > > > (0x00002ab760894000)
> > > > > librt.so.1 => /lib64/librt.so.1 (0x00002ab760d6f000)
> > > > > [root at maury2 bin]#
> > > > >
> > > > > -----Original Message-----
> > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > Julie
> > > > > Prestopnik
> > > > >
> > > > > Thank you, Greg. Can you please tell me - were the
libraries
> > > > > and
> > > > > the
> > > > > MET
> > > > > code built with the same version of the compiler. I'm
checking
> > > > > to
> > > > > see if,
> > > > > for example, the libraries were built with gcc-6.3.0 but the
> > > > > MET
> > > > > code
> > > > > was
> > > > > build with gcc-4.4.7.
> > > > >
> > > > > It sounds like we need the libraries and the MET code to be
> > > > > built
> > > > > with the
> > > > > same version of the compiler, in this case.
> > > > >
> > > > > Thanks for any information you can provide.
> > > > >
> > > > > Julie
> > > > >
> > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
Contractor,
> > > > > Code
> > > > > 7501.1
> > > > > via RT <met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >
> > > > > >
> > > > > > Find the logs attached.
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Could you please run the following:
> > > > > >
> > > > > > which pb2nc
> > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > >
> > > > > > and send me the output?
> > > > > >
> > > > > > Please also send your config.log and make.log file.
> > > > > >
> > > > > > Thank you!
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
> > > > > > Contractor,
> > > > > > Code
> > > > > 7501.1
> > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
> > > > > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >
> > > > > > >
> > > > > > > I used the buildscript. It should build all of the
external
> > > > > > > libraries,
> > > > > so
> > > > > > > I believe everything was built with the same compiler.
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
> > > > > > > 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Hi Greg. Our developer suspects it may be a mismatched
> > > > > compiler/library
> > > > > > > version. Was BUFRLIB installed with the same compiler
as
> > > > > > > MET?
> > > > > > > Also,
> > > > > > what
> > > > > > > version of BURRLIB are you using?
> > > > > > >
> > > > > > > Thanks,
> > > > > > > Julie
> > > > > > >
> > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > > > <jpresto at ucar.edu>
> > > > > > > wrote:
> > > > > > >
> > > > > > > > Hi Greg. I am checking in with another developer
> > > > > > > > regarding
> > > > > > > > the
> > > > > > > > error
> > > > > > you
> > > > > > > > experienced. Thank you for your patience.
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
> > > > > > > > Contractor,
> > > > > > > > Code
> > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > >>
> > > > > > > >> <URL:
> > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >> >
> > > > > > > >>
> > > > > > > >> I was able to build on Red Hat using:
> > > > > > > >>
> > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > > > > >> This is free software; see the source for copying
> > > > > > > >> conditions.
> > > > > > > >> There
> > > > > > is
> > > > > > > NO
> > > > > > > >> warranty; not even for MERCHANTABILITY or FITNESS FOR
A
> > > > > > > >> PARTICULAR
> > > > > > > >> PURPOSE.
> > > > > > > >>
> > > > > > > >> [ramos at lorenz ~]$
> > > > > > > >>
> > > > > > > >> Not all of the tests passed, please see attachment.
> > > > > > > >>
> > > > > > > >> Greg
> > > > > > > >>
> > > > > > > >> -----Original Message-----
> > > > > > > >> From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > >> 8.1
> > > > > > > >> Julie
> > > > > > > >> Prestopnik
> > > > > > > >>
> > > > > > > >> Thank you for letting me know. I will proceed with
> > > > > > > >> trying
> > > > > > > >> to
> > > > > > reproduce
> > > > > > > >> the
> > > > > > > >> problem using the gcc-6.3.0. I will follow up once I
> > > > > > > >> have
> > > > > > > >> more
> > > > > > > >> information.
> > > > > > > >>
> > > > > > > >> Julie
> > > > > > > >>
> > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
> > > > > > > >> Contractor,
> > > > > > > >> Code
> > > > > > > 7501.1
> > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > >>
> > > > > > > >> >
> > > > > > > >> > <URL:
> > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >> > >
> > > > > > > >> >
> > > > > > > >> > When I compiled MET 8.0 the last time, it worked. I
> > > > > > > >> > was
> > > > > > > >> > also
> > > > > > > >> > able
> > > > > to
> > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > >> >
> > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > >> > Password:
> > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
199.9.0.18
> > > > > > > >> >
> > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > >> >
> > > > > > > >> > You are accessing a U.S. Government (USG)
Information
> > > > > > > >> > System
> > > > > > > >> > (IS)
> > > > > > that
> > > > > > > >> is
> > > > > > > >> > provided for USG-authorized use only.
> > > > > > > >> > By using this IS (which includes any device
attached
> > > > > > > >> > to
> > > > > > > >> > this
> > > > > > > >> > IS),
> > > > > > you
> > > > > > > >> > consent to the following conditions:
> > > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > > >> > communications
> > > > > > > >> > on
> > > > > > > >> > this
> > > > > IS
> > > > > > > for
> > > > > > > >> > purposes including, but not limited to,
> > > > > > > >> > penetration testing, COMSEC monitoring, network
> > > > > > > >> > operations
> > > > > > > >> > and
> > > > > > > defense,
> > > > > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > > > > >> > and counterintelligence (CI) investigations.
> > > > > > > >> > -At any time, the USG may inspect and seize data
> > > > > > > >> > stored
> > > > > > > >> > on
> > > > > > > >> > this
> > > > > IS.
> > > > > > > >> > -Communications using, or data stored on, this IS
are
> > > > > > > >> > not
> > > > > > > >> > private,
> > > > > > are
> > > > > > > >> > subject to routine monitoring, interception,
> > > > > > > >> > and search, and may be disclosed or used for any
USG-
> > > > > > > >> > authorized
> > > > > > > purpose.
> > > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > > >> > authentication
> > > > > > > >> > and
> > > > > access
> > > > > > > >> > controls) to protect USG interests -- not for
> > > > > > > >> > your personal benefit or privacy.
> > > > > > > >> > -Notwithstanding the above, using this IS does not
> > > > > > > >> > constitute
> > > > > > consent
> > > > > > > to
> > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > >> > monitoring of the content of privileged
> > > > > > > >> > communications,
> > > > > > > >> > or
> > > > > > > >> > work
> > > > > > > product,
> > > > > > > >> > related to personal representation or
> > > > > > > >> > services by attorneys, psychotherapists, or clergy,
> > > > > > > >> > and
> > > > > > > >> > their
> > > > > > > >> assistants.
> > > > > > > >> > Such communications and work product are
> > > > > > > >> > private and confidential. See User Agreement for
> > > > > > > >> > details.
> > > > > > > >> >
> > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > >> > ramos at leo1:~>
> > > > > > > >> >
> > > > > > > >> > -----Original Message-----
> > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > >> > MET
> > > > > > > >> > 8.1
> > > > > Julie
> > > > > > > >> > Prestopnik
> > > > > > > >> >
> > > > > > > >> > Hi Gregory. I have not tested with version 6.3.0
of
> > > > > > > >> > the
> > > > > > > >> > gcc
> > > > > > compiler,
> > > > > > > >> but
> > > > > > > >> > rather only with lower versions (specifically
4.8.5).
> > > > > > > >> > We
> > > > > > > >> > would,
> > > > > of
> > > > > > > >> course,
> > > > > > > >> > want our code to work with higher versions as well.
I
> > > > > > > >> > have
> > > > > > > >> > not
> > > > > yet
> > > > > > > had
> > > > > > > >> an
> > > > > > > >> > opportunity to test with a higher version like
6.3.0.
> > > > > > > >> > Do
> > > > > > > >> > you have
> > > > > > the
> > > > > > > >> > ability to compile MET using a lesser version of
the
> > > > > > > >> > gcc
> > > > > > > >> > compiler
> > > > > to
> > > > > > > >> see if
> > > > > > > >> > that clears up the issues you are experiencing?
> > > > > > > >> >
> > > > > > > >> > Julie
> > > > > > > >> >
> > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr. Gregory,
> > > > > > > >> > Contractor,
> > > > > Code
> > > > > > > >> 7501.1
> > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > >> >
> > > > > > > >> > >
> > > > > > > >> > > <URL:
> > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >> > > >
> > > > > > > >> > >
> > > > > > > >> > > Any updates or suggestions?
> > > > > > > >> > >
> > > > > > > >> > > Greg
> > > > > > > >> > >
> > > > > > > >> > > -----Original Message-----
> > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > >> > > MET
> > > > > > > >> > > 8.1
> > > > > > Julie
> > > > > > > >> > > Prestopnik
> > > > > > > >> > >
> > > > > > > >> > > Hi Greg. Thank you for passing along your
> > > > > > > >> > > config.log
> > > > > > > >> > > file. I
> > > > > > see a
> > > > > > > >> > couple
> > > > > > > >> > > of linker problems in there:
> > > > > > > >> > >
> > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > >> > >
> > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > >> > >
> > > > > > > >> > > Based on those errors, it looks like you may not
> > > > > > > >> > > have
> > > > > > > >> > > flex
> > > > > > > >> > > and
> > > > > > bison
> > > > > > > >> > > installed. Please install those and try running
> > > > > > > >> > > configure
> > > > > again.
> > > > > > > >> Please
> > > > > > > >> > > let us know how it goes.
> > > > > > > >> > >
> > > > > > > >> > > Also, I just wanted to address one other thing.
In
> > > > > > > >> > > your
> > > > > original
> > > > > > > >> email
> > > > > > > >> > you
> > > > > > > >> > > listed the following as part of your "MET
> > > > > > > >> > > Configuration
> > > > > settings":
> > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
> > > > > > > >> > > -lutil
> > > > > > > >> > > -lm
> > > > > > -Xlinker
> > > > > > > >> > > -export-dynamic
> > > > > > > >> > >
> > > > > > > >> > > However, in your config.log file it looks like
> > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > >> actually
> > > > > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
> > > > > > > >> > > -lpython2.7
> > > > > > > -lpthread
> > > > > > > >> > -ldl
> > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is
> > > > > > > >> > > correct
> > > > > > > >> > > because
> > > > > you
> > > > > > > >> need
> > > > > > > >> > to
> > > > > > > >> > > have that -L part in there, so I just want to
ensure
> > > > > > > >> > > that
> > > > > > > >> > > will
> > > > > > stay
> > > > > > > >> there
> > > > > > > >> > > when you run configure again.
> > > > > > > >> > >
> > > > > > > >> > > Thanks,
> > > > > > > >> > > Julie
> > > > > > > >> > >
> > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr.
Gregory,
> > > > > > > >> > > Contractor,
> > > > > > Code
> > > > > > > >> > 7501.1
> > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >> > >
> > > > > > > >> > > >
> > > > > > > >> > > > <URL:
> > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > >
> > > > > > > >> > > >
> > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > >> > > >
> > > > > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > >> > > >
> > > > > > > >> > > >
> > > > > > > >> > > > -----Original Message-----
> > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > >> > > > regarding
> > > > > > > >> > > > MET
> > > > > > > >> > > > 8.1
> > > > > > > Julie
> > > > > > > >> > > > Prestopnik
> > > > > > > >> > > >
> > > > > > > >> > > > Hi Greg,
> > > > > > > >> > > >
> > > > > > > >> > > > I'll go ahead and assign this ticket to Julie,
and
> > > > > > > >> > > > she
> > > > > > > >> > > > should
> > > > > be
> > > > > > > >> > writing
> > > > > > > >> > > > you back in the next couple of days.
> > > > > > > >> > > >
> > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > >> > > > "configure.log"
> > > > > > > >> > > > file you
> > > > > > > >> > generated
> > > > > > > >> > > as
> > > > > > > >> > > > well as the "config.log" file from that same
> > > > > > > >> > > > directory.
> > > > > > > >> > > > So
> > > > > > please
> > > > > > > >> send
> > > > > > > >> > > > those along when you get a chance.
> > > > > > > >> > > >
> > > > > > > >> > > > Thanks,
> > > > > > > >> > > > John
> > > > > > > >> > > >
> > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr.
Gregory,
> > > > > > > >> > > > Contractor,
> > > > > > > Code
> > > > > > > >> > > 7501.1
> > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >> > > >
> > > > > > > >> > > > >
> > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was
> > > > > > > >> > > > > acted
> > > > > > > >> > > > > upon.
> > > > > > > >> > > > > Transaction: Ticket created by
> > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > >> > > > > Queue: met_help
> > > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
Prestopnik
> > > > > > > >> > > > > Owner: Nobody
> > > > > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > >> > > > > Status: new
> > > > > > > >> > > > > Ticket <URL:
> > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >> > > >
> > > > > > > >> > > > >
> > > > > > > >> > > > >
> > > > > > > >> > > > > Julie helped me compiled 8.0 using gcc 6.3.0
and
> > > > > > > >> > > > > Anaconda
> > > > > > 2.4.0.
> > > > > > > >> The
> > > > > > > >> > > user
> > > > > > > >> > > > > asked for 8.1. I took notes last time, but
> > > > > > > >> > > > > running
> > > > > > > >> > > > > into
> > > > > > > problems:
> > > > > > > >> > > > >
> > > > > > > >> > > > > MET Configuration settings...
> > > > > > > >> > > > > export MET_FONT_DIR=/software/depot/met-
> > > > > > > >> > > > > 8.1/fonts
> > > > > > > >> > > > > export
> > > > > > > >> > > > >
> > > > > > > >> >
> > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > >> > > > > export
> > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export
> > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > >> > -fno-strict-aliasing
> > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
> > > > > > > >> > > > > -Wstrict-
> > > > > > > >> > > > > prototypes
> > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export
> > > > > > > >> > > > >
> > > > > > > >> > > >
> > > > > > > >> > >
> > > > > > > >> >
> > > > > > > >>
> > > > > > >
> > > > > >
> > > > > MET_TARBALL=/software/depot/met-
> > > > > 8.1/tar_files//software/depot/met-
> > > > > 8.1/tar_files.tar
> > > > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export
> > > > > > MET_FREETYPELIB=/software/depot/met-8.1/external_libs/lib
> > > > > > > >> > > > > export
> > > > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread
-ldl
> > > > > > > >> > > > > -lutil
> > > > > > > >> > > > > -lm
> > > > > > > >> -Xlinker
> > > > > > > >> > > > > -export-dynamic
> > > > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs
> > > > > > > >> > > > > export MET_SUBDIR=/software/depot/met-
8.1/met-
> > > > > > > >> > > > > 8.1
> > > > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > >> > > > > ./configure --prefix=/software/depot/met-
> > > > > > > >> > > > > 8.1/met-
> > > > > > > >> > > > > 8.1
> > > > > > > >> --enable-grib2
> > > > > > > >> > > > > --enable-modis --enable-mode_graphics
--enable-
> > > > > > > >> > > > > lidar2nc >
> > > > > > > >> > > configure.log
> > > > > > > >> > > > > 2> &1
> > > > > > > >> > > > > configure returned with non-zero (127) status
> > > > > > > >> > > > >
> > > > > > > >> > > > >
> > > > > > > >> > > >
> > > > > > > >> > > >
> > > > > > > >> > > >
> > > > > > > >> > >
> > > > > > > >> > >
> > > > > > > >> > >
> > > > > > > >> > >
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >>
> > > > > > > >>
> > > > > > > >>
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > >
> > > > >
> > > >
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Howard Soh
Time: Tue May 21 18:33:59 2019
Yes, the third party libraries should be compiled with newer version.
The compile error with gnu 7.3.0 happens with gnu 6.3.0, too.
The fix/patch is not ready officially. One file has to be corrected to
support newer version gnu compiler. Would you replace data_line.cc
with attached file or modify it manually?
Filename:
met-8.1/src/basic/vx_util/data_line.cc
line 202:
out << prefix << sstream << Line.substr(j) << "\"\n";
==>
out << prefix << sstream.str() << Line.substr(j) << "\"\n";
line 218:
out << prefix << sstream << Line.substr(j) << "\"\n";
==>
out << prefix << sstream.str() << Line.substr(j) << "\"\n";
Cheers,
Howard
On Tue May 21 18:21:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> Did new external libraries need to be built with 8.1?
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 16, 2019 4:01 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> No new tools but many enhancements.
>
> It's available at
> https://dtcenter.org/community-code/model-evaluation-tools-met/met-
> version-8-1
>
> Cheers,
> Howard
>
> On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > Maybe you can answer one question while I try to reinstall
> > everything. What features does 8.1
> > provide over 8.0?
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, May 16, 2019 2:46 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Would try this command at /software/depot/met-8.1/met-8.1/scripts
> > directory?
> >
> > 1. check the environtment variable LD_LIBRARY_PATH:
> > echo $LD_LIBRARY_PATH
> >
> > 2. Save LD_LIBRARY_PATH
> > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > OR
> > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> >
> > 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-2.4.0/lib
> >
> > 4. Check which libgfortran.so at /software/depot/met-8.1/met-
> > 8.1/scripts directory.
> >
> > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran
> > OR
> > ldd ../bin/pb2nc | grep libgfortran
> >
> > 5. Check libgfortran version (should be libgfortran.so.3, not
so.4)
> >
> > 6. Run the failed command manually at /software/depot/met-8.1/met-
> > 8.1/scripts directory if libgfortran.so.3.
> >
> > ../src/tools/other/pb2nc/pb2nc \
> >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > \
> > ../out/pb2nc/sample_pb.nc \
> > config/PB2NCConfig_G212 \
> > -v 2
> >
> > 7. Change back LD_LIBRARY_PATH
> > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > OR
> > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> >
> > Cheers,
> > Howard
> >
> >
> > On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-grib2-
support
> > > [ramos at lorenz bin]$ ldd modis_regrid
> > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003453800000)
> > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > > libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> > > libpng16.so.16 => /software/depot/met-
> > > 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> > > libz.so.1 => /software/depot/met-
8.1/external_libs/lib/libz.so.1
> > > (0x00007f7f19af4000)
> > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > 8.1/external_libs/lib/libnetcdf_c++4.so.1 (0x00007f7f198a6000)
> > > libnetcdf.so.11 => /software/depot/met-
> > > 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> > > libgsl.so.19 => /software/depot/met-
> > > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > > libgslcblas.so.0 => /software/depot/met-
> > > 8.1/external_libs/lib/libgslcblas.so.0 (0x00007f7f18eeb000)
> > > libjpeg.so.9 => /software/depot/anaconda-
2.4.0/lib/libjpeg.so.9
> > > (0x00007f7f18c99000)
> > > libstdc++.so.6 => /software/depot/anaconda-
> > > 2.4.0/lib/libstdc++.so.6
> > > (0x00007f7f18b58000)
> > > libgcc_s.so.1 => /software/depot/anaconda-
2.4.0/lib/libgcc_s.so.1
> > > (0x00007f7f18b42000)
> > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > libhdf5_hl.so.10 => /software/depot/met-
> > > 8.1/external_libs/lib/libhdf5_hl.so.10 (0x00007f7f18922000)
> > > libhdf5.so.10 => /software/depot/met-
> > > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > > [ramos at lorenz bin]$
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, May 16, 2019 1:35 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > MET is expecting "libpython2.7.so" to enable python support.
> > >
> > > A log message shows the python was not enabled. Is python
> > > supporting
> > > is critical?
> > >
> > > ./configure --prefix=/software/depot/met-8.1/met-8.1 --enable-
grib2
> > > --enable-modis --enable-mode_graphics --enable-lidar2nc >
> > > configure.log 2>&1
> > >
> > > If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> > > 1. Make sure python is not enabled
> > > no "--enable-python" option for ./configure
> > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
> > > LD_LIBRARY_PATH
> > > at the build time and runtime both.
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > I was able to compile Met 8.0 on our Cray with:
> > > >
> > > > ramos at leo1:~> gcc --version
> > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.)
> > > > Copyright (C) 2017 Free Software Foundation, Inc.
> > > > This is free software; see the source for copying conditions.
> > > > There
> > > > is NO
> > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > PARTICULAR
> > > > PURPOSE.
> > > >
> > > > ramos at leo1:~> gfortran --version
> > > > GNU Fortran (GCC) 7.3.0 20180125 (Cray Inc.)
> > > > Copyright (C) 2017 Free Software Foundation, Inc.
> > > > This is free software; see the source for copying conditions.
> > > > There
> > > > is NO
> > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > PARTICULAR
> > > > PURPOSE.
> > > >
> > > > ramos at leo1:~>
> > > >
> > > > We don't have that version on our Red Hat systems. Met 8.0
worked
> > > > on
> > > > RH, but 8.1 failed on the 'make test'. The user says she is
fine
> > > > with
> > > > the executables so far. I will have to build a gfortran 7.x
> > > > version.
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > > Prestopnik
> > > >
> > > > Hello,
> > > >
> > > > Is gcc/gfortran 7.x compiler available?
> > > >
> > > > The problem was caused by the path for python library
> > > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4 exists
> > > > there
> > > > from the ldd output. It was used on building MET. MET was
> > > > compiled
> > > > with gcc 4.4.7 which supports only libgfortran.so.3, and
linked
> > > > with
> > > > libgfortran.so.4 because of MET_PYTHON_LD configuration. Some
> > > > libraries do not support the backward compatibility.
> > > > libgfortran.so
> > > > is
> > > > one of them. In this case, the compiler version and library
> > > > version
> > > > should match.
> > > >
> > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
8.1/bin/pb2nc
> > > > |grep
> > > > gfortran
> > > > libgfortran.so.4 => /software/depot/anaconda-
> > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > >
> > > > export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-
> > > > dynamic
> > > >
> > > > The solution is compiling third party libraries and MET with
> > > > version
> > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > > libgfortran.so.5,
> > > > So the same problem will happen if MET is built with
gcc/gfortran
> > > > 6.x
> > > > or gcc/gfortran 8.x.
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > > On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > Attached is the config.log for NetCDf it shows /usr/bin/gcc
> > > > >
> > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat
version.
> > > > >
> > > > > -----Original Message-----
> > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > Julie
> > > > > Prestopnik
> > > > >
> > > > > Thank you. Unfortunately, that does not tell me if the
> > > > > libraries
> > > > > and
> > > > > the
> > > > > MET code were built with the same version of the compiler.
I
> > > > > also
> > > > > do
> > > > > not
> > > > > see bufrlib in that list.
> > > > >
> > > > > Can you please tell me - were the libraries and the MET code
> > > > > built
> > > > > with the
> > > > > same version of the compiler? I'm checking to see if, for
> > > > > example,
> > > > > the
> > > > > libraries were built with gcc-6.3.0 but the MET code was
build
> > > > > with
> > > > > gcc-4.4.7.
> > > > >
> > > > > Thanks!
> > > > >
> > > > > Julie
> > > > >
> > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
Contractor,
> > > > > Code
> > > > > 7501.1
> > > > > via RT <met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >
> > > > > >
> > > > > > You can see I am using those libraries for MET 8.1:
> > > > > >
> > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > > libpython2.7.so.1.0 =>
> > > > > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > > > > (0x00002ab75e1f3000)
> > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > (0x00002ab75e63b000)
> > > > > > libdl.so.2 => /lib64/libdl.so.2
(0x00002ab75e858000)
> > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > (0x00002ab75ea5c000)
> > > > > > libpng16.so.16 =>
> > > > > > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > > > > > (0x00002ab75ec60000)
> > > > > > libz.so.1 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > (0x00002ab75ee92000)
> > > > > > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > > > > > libnetcdf_c++4.so.1 =>
> > > > > > /software/depot/met-
8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > (0x00002ab75f32f000)
> > > > > > libnetcdf.so.11 =>
> > > > > > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > > > > > (0x00002ab75f57c000)
> > > > > > libgsl.so.19 =>
> > > > > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > > > > (0x00002ab75f8bb000)
> > > > > > libgslcblas.so.0 =>
> > > > > > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > > > > > (0x00002ab75fcfe000)
> > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > (0x00002ab75ff37000)
> > > > > > libstdc++.so.6 =>
> > > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > > (0x00002ab760189000)
> > > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > (0x00002ab7602cb000)
> > > > > > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > > > > > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > > > > > libhdf5_hl.so.10 =>
> > > > > > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > (0x00002ab760675000)
> > > > > > libhdf5.so.10 =>
> > > > > > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > > > > > (0x00002ab760894000)
> > > > > > librt.so.1 => /lib64/librt.so.1
(0x00002ab760d6f000)
> > > > > > [root at maury2 bin]#
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Thank you, Greg. Can you please tell me - were the
libraries
> > > > > > and
> > > > > > the
> > > > > > MET
> > > > > > code built with the same version of the compiler. I'm
> > > > > > checking
> > > > > > to
> > > > > > see if,
> > > > > > for example, the libraries were built with gcc-6.3.0 but
the
> > > > > > MET
> > > > > > code
> > > > > > was
> > > > > > build with gcc-4.4.7.
> > > > > >
> > > > > > It sounds like we need the libraries and the MET code to
be
> > > > > > built
> > > > > > with the
> > > > > > same version of the compiler, in this case.
> > > > > >
> > > > > > Thanks for any information you can provide.
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
> > > > > > Contractor,
> > > > > > Code
> > > > > > 7501.1
> > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
> > > > > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >
> > > > > > >
> > > > > > > Find the logs attached.
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
> > > > > > > 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Could you please run the following:
> > > > > > >
> > > > > > > which pb2nc
> > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > >
> > > > > > > and send me the output?
> > > > > > >
> > > > > > > Please also send your config.log and make.log file.
> > > > > > >
> > > > > > > Thank you!
> > > > > > >
> > > > > > > Julie
> > > > > > >
> > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
> > > > > > > Contractor,
> > > > > > > Code
> > > > > > 7501.1
> > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > <URL:
> > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >
> > > > > > > >
> > > > > > > > I used the buildscript. It should build all of the
> > > > > > > > external
> > > > > > > > libraries,
> > > > > > so
> > > > > > > > I believe everything was built with the same compiler.
> > > > > > > >
> > > > > > > > Greg
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > 8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Hi Greg. Our developer suspects it may be a
mismatched
> > > > > > compiler/library
> > > > > > > > version. Was BUFRLIB installed with the same
compiler
> > > > > > > > as
> > > > > > > > MET?
> > > > > > > > Also,
> > > > > > > what
> > > > > > > > version of BURRLIB are you using?
> > > > > > > >
> > > > > > > > Thanks,
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > > > > <jpresto at ucar.edu>
> > > > > > > > wrote:
> > > > > > > >
> > > > > > > > > Hi Greg. I am checking in with another developer
> > > > > > > > > regarding
> > > > > > > > > the
> > > > > > > > > error
> > > > > > > you
> > > > > > > > > experienced. Thank you for your patience.
> > > > > > > > >
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
> > > > > > > > > Contractor,
> > > > > > > > > Code
> > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > >
> > > > > > > > >>
> > > > > > > > >> <URL:
> > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >> >
> > > > > > > > >>
> > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > >>
> > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > > > > > >> This is free software; see the source for copying
> > > > > > > > >> conditions.
> > > > > > > > >> There
> > > > > > > is
> > > > > > > > NO
> > > > > > > > >> warranty; not even for MERCHANTABILITY or FITNESS
FOR
> > > > > > > > >> A
> > > > > > > > >> PARTICULAR
> > > > > > > > >> PURPOSE.
> > > > > > > > >>
> > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > >>
> > > > > > > > >> Not all of the tests passed, please see attachment.
> > > > > > > > >>
> > > > > > > > >> Greg
> > > > > > > > >>
> > > > > > > > >> -----Original Message-----
> > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > >> MET
> > > > > > > > >> 8.1
> > > > > > > > >> Julie
> > > > > > > > >> Prestopnik
> > > > > > > > >>
> > > > > > > > >> Thank you for letting me know. I will proceed with
> > > > > > > > >> trying
> > > > > > > > >> to
> > > > > > > reproduce
> > > > > > > > >> the
> > > > > > > > >> problem using the gcc-6.3.0. I will follow up once
I
> > > > > > > > >> have
> > > > > > > > >> more
> > > > > > > > >> information.
> > > > > > > > >>
> > > > > > > > >> Julie
> > > > > > > > >>
> > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
> > > > > > > > >> Contractor,
> > > > > > > > >> Code
> > > > > > > > 7501.1
> > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > >>
> > > > > > > > >> >
> > > > > > > > >> > <URL:
> > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >> > >
> > > > > > > > >> >
> > > > > > > > >> > When I compiled MET 8.0 the last time, it worked.
I
> > > > > > > > >> > was
> > > > > > > > >> > also
> > > > > > > > >> > able
> > > > > > to
> > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > >> >
> > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > >> > Password:
> > > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
199.9.0.18
> > > > > > > > >> >
> > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > > >> >
> > > > > > > > >> > You are accessing a U.S. Government (USG)
> > > > > > > > >> > Information
> > > > > > > > >> > System
> > > > > > > > >> > (IS)
> > > > > > > that
> > > > > > > > >> is
> > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > >> > By using this IS (which includes any device
attached
> > > > > > > > >> > to
> > > > > > > > >> > this
> > > > > > > > >> > IS),
> > > > > > > you
> > > > > > > > >> > consent to the following conditions:
> > > > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > > > >> > communications
> > > > > > > > >> > on
> > > > > > > > >> > this
> > > > > > IS
> > > > > > > > for
> > > > > > > > >> > purposes including, but not limited to,
> > > > > > > > >> > penetration testing, COMSEC monitoring, network
> > > > > > > > >> > operations
> > > > > > > > >> > and
> > > > > > > > defense,
> > > > > > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > > > > > >> > and counterintelligence (CI) investigations.
> > > > > > > > >> > -At any time, the USG may inspect and seize data
> > > > > > > > >> > stored
> > > > > > > > >> > on
> > > > > > > > >> > this
> > > > > > IS.
> > > > > > > > >> > -Communications using, or data stored on, this IS
> > > > > > > > >> > are
> > > > > > > > >> > not
> > > > > > > > >> > private,
> > > > > > > are
> > > > > > > > >> > subject to routine monitoring, interception,
> > > > > > > > >> > and search, and may be disclosed or used for any
> > > > > > > > >> > USG-
> > > > > > > > >> > authorized
> > > > > > > > purpose.
> > > > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > > > >> > authentication
> > > > > > > > >> > and
> > > > > > access
> > > > > > > > >> > controls) to protect USG interests -- not for
> > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > >> > -Notwithstanding the above, using this IS does
not
> > > > > > > > >> > constitute
> > > > > > > consent
> > > > > > > > to
> > > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > > >> > monitoring of the content of privileged
> > > > > > > > >> > communications,
> > > > > > > > >> > or
> > > > > > > > >> > work
> > > > > > > > product,
> > > > > > > > >> > related to personal representation or
> > > > > > > > >> > services by attorneys, psychotherapists, or
clergy,
> > > > > > > > >> > and
> > > > > > > > >> > their
> > > > > > > > >> assistants.
> > > > > > > > >> > Such communications and work product are
> > > > > > > > >> > private and confidential. See User Agreement for
> > > > > > > > >> > details.
> > > > > > > > >> >
> > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > >> > ramos at leo1:~>
> > > > > > > > >> >
> > > > > > > > >> > -----Original Message-----
> > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > >> > MET
> > > > > > > > >> > 8.1
> > > > > > Julie
> > > > > > > > >> > Prestopnik
> > > > > > > > >> >
> > > > > > > > >> > Hi Gregory. I have not tested with version 6.3.0
of
> > > > > > > > >> > the
> > > > > > > > >> > gcc
> > > > > > > compiler,
> > > > > > > > >> but
> > > > > > > > >> > rather only with lower versions (specifically
> > > > > > > > >> > 4.8.5).
> > > > > > > > >> > We
> > > > > > > > >> > would,
> > > > > > of
> > > > > > > > >> course,
> > > > > > > > >> > want our code to work with higher versions as
well.
> > > > > > > > >> > I
> > > > > > > > >> > have
> > > > > > > > >> > not
> > > > > > yet
> > > > > > > > had
> > > > > > > > >> an
> > > > > > > > >> > opportunity to test with a higher version like
> > > > > > > > >> > 6.3.0.
> > > > > > > > >> > Do
> > > > > > > > >> > you have
> > > > > > > the
> > > > > > > > >> > ability to compile MET using a lesser version of
the
> > > > > > > > >> > gcc
> > > > > > > > >> > compiler
> > > > > > to
> > > > > > > > >> see if
> > > > > > > > >> > that clears up the issues you are experiencing?
> > > > > > > > >> >
> > > > > > > > >> > Julie
> > > > > > > > >> >
> > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr.
Gregory,
> > > > > > > > >> > Contractor,
> > > > > > Code
> > > > > > > > >> 7501.1
> > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > >> >
> > > > > > > > >> > >
> > > > > > > > >> > > <URL:
> > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >> > > >
> > > > > > > > >> > >
> > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > >> > >
> > > > > > > > >> > > Greg
> > > > > > > > >> > >
> > > > > > > > >> > > -----Original Message-----
> > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > >> > > regarding
> > > > > > > > >> > > MET
> > > > > > > > >> > > 8.1
> > > > > > > Julie
> > > > > > > > >> > > Prestopnik
> > > > > > > > >> > >
> > > > > > > > >> > > Hi Greg. Thank you for passing along your
> > > > > > > > >> > > config.log
> > > > > > > > >> > > file. I
> > > > > > > see a
> > > > > > > > >> > couple
> > > > > > > > >> > > of linker problems in there:
> > > > > > > > >> > >
> > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > >> > >
> > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > >> > >
> > > > > > > > >> > > Based on those errors, it looks like you may
not
> > > > > > > > >> > > have
> > > > > > > > >> > > flex
> > > > > > > > >> > > and
> > > > > > > bison
> > > > > > > > >> > > installed. Please install those and try
running
> > > > > > > > >> > > configure
> > > > > > again.
> > > > > > > > >> Please
> > > > > > > > >> > > let us know how it goes.
> > > > > > > > >> > >
> > > > > > > > >> > > Also, I just wanted to address one other thing.
> > > > > > > > >> > > In
> > > > > > > > >> > > your
> > > > > > original
> > > > > > > > >> email
> > > > > > > > >> > you
> > > > > > > > >> > > listed the following as part of your "MET
> > > > > > > > >> > > Configuration
> > > > > > settings":
> > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
> > > > > > > > >> > > -lutil
> > > > > > > > >> > > -lm
> > > > > > > -Xlinker
> > > > > > > > >> > > -export-dynamic
> > > > > > > > >> > >
> > > > > > > > >> > > However, in your config.log file it looks like
> > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > >> actually
> > > > > > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
> > > > > > > > >> > > -lpython2.7
> > > > > > > > -lpthread
> > > > > > > > >> > -ldl
> > > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is
> > > > > > > > >> > > correct
> > > > > > > > >> > > because
> > > > > > you
> > > > > > > > >> need
> > > > > > > > >> > to
> > > > > > > > >> > > have that -L part in there, so I just want to
> > > > > > > > >> > > ensure
> > > > > > > > >> > > that
> > > > > > > > >> > > will
> > > > > > > stay
> > > > > > > > >> there
> > > > > > > > >> > > when you run configure again.
> > > > > > > > >> > >
> > > > > > > > >> > > Thanks,
> > > > > > > > >> > > Julie
> > > > > > > > >> > >
> > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr.
Gregory,
> > > > > > > > >> > > Contractor,
> > > > > > > Code
> > > > > > > > >> > 7501.1
> > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > >> > >
> > > > > > > > >> > > >
> > > > > > > > >> > > > <URL:
> > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >
> > > > > > > > >> > > >
> > > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > > >> > > >
> > > > > > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > >> > > >
> > > > > > > > >> > > >
> > > > > > > > >> > > > -----Original Message-----
> > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > >> > > > regarding
> > > > > > > > >> > > > MET
> > > > > > > > >> > > > 8.1
> > > > > > > > Julie
> > > > > > > > >> > > > Prestopnik
> > > > > > > > >> > > >
> > > > > > > > >> > > > Hi Greg,
> > > > > > > > >> > > >
> > > > > > > > >> > > > I'll go ahead and assign this ticket to
Julie,
> > > > > > > > >> > > > and
> > > > > > > > >> > > > she
> > > > > > > > >> > > > should
> > > > > > be
> > > > > > > > >> > writing
> > > > > > > > >> > > > you back in the next couple of days.
> > > > > > > > >> > > >
> > > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > > >> > > > "configure.log"
> > > > > > > > >> > > > file you
> > > > > > > > >> > generated
> > > > > > > > >> > > as
> > > > > > > > >> > > > well as the "config.log" file from that same
> > > > > > > > >> > > > directory.
> > > > > > > > >> > > > So
> > > > > > > please
> > > > > > > > >> send
> > > > > > > > >> > > > those along when you get a chance.
> > > > > > > > >> > > >
> > > > > > > > >> > > > Thanks,
> > > > > > > > >> > > > John
> > > > > > > > >> > > >
> > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr.
> > > > > > > > >> > > > Gregory,
> > > > > > > > >> > > > Contractor,
> > > > > > > > Code
> > > > > > > > >> > > 7501.1
> > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > >> > > >
> > > > > > > > >> > > > >
> > > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was
> > > > > > > > >> > > > > acted
> > > > > > > > >> > > > > upon.
> > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > >> > > > > Queue: met_help
> > > > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
> > > > > > > > >> > > > > Prestopnik
> > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > >> > > > > Status: new
> > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >> > > >
> > > > > > > > >> > > > >
> > > > > > > > >> > > > >
> > > > > > > > >> > > > > Julie helped me compiled 8.0 using gcc
6.3.0
> > > > > > > > >> > > > > and
> > > > > > > > >> > > > > Anaconda
> > > > > > > 2.4.0.
> > > > > > > > >> The
> > > > > > > > >> > > user
> > > > > > > > >> > > > > asked for 8.1. I took notes last time, but
> > > > > > > > >> > > > > running
> > > > > > > > >> > > > > into
> > > > > > > > problems:
> > > > > > > > >> > > > >
> > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > >> > > > > export MET_FONT_DIR=/software/depot/met-
> > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > >> > > > > export
> > > > > > > > >> > > > >
> > > > > > > > >> >
> > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > >> > > > > export
> > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > >> > > > > export
> > > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
> > > > > > > > >> > > > > -Wstrict-
> > > > > > > > >> > > > > prototypes
> > > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > >> > > > > export
> > > > > > > > >> > > > >
> > > > > > > > >> > > >
> > > > > > > > >> > >
> > > > > > > > >> >
> > > > > > > > >>
> > > > > > > >
> > > > > > >
> > > > > > MET_TARBALL=/software/depot/met-
> > > > > > 8.1/tar_files//software/depot/met-
> > > > > > 8.1/tar_files.tar
> > > > > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > >> > > > > export
> > > > > > > MET_FREETYPELIB=/software/depot/met-
8.1/external_libs/lib
> > > > > > > > >> > > > > export
> > > > > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread
> > > > > > > > >> > > > > -ldl
> > > > > > > > >> > > > > -lutil
> > > > > > > > >> > > > > -lm
> > > > > > > > >> -Xlinker
> > > > > > > > >> > > > > -export-dynamic
> > > > > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > >> > > > > export MET_SUBDIR=/software/depot/met-
8.1/met-
> > > > > > > > >> > > > > 8.1
> > > > > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > > >> > > > > ./configure --prefix=/software/depot/met-
> > > > > > > > >> > > > > 8.1/met-
> > > > > > > > >> > > > > 8.1
> > > > > > > > >> --enable-grib2
> > > > > > > > >> > > > > --enable-modis --enable-mode_graphics
> > > > > > > > >> > > > > --enable-
> > > > > > > > >> > > > > lidar2nc >
> > > > > > > > >> > > configure.log
> > > > > > > > >> > > > > 2> &1
> > > > > > > > >> > > > > configure returned with non-zero (127)
status
> > > > > > > > >> > > > >
> > > > > > > > >> > > > >
> > > > > > > > >> > > >
> > > > > > > > >> > > >
> > > > > > > > >> > > >
> > > > > > > > >> > >
> > > > > > > > >> > >
> > > > > > > > >> > >
> > > > > > > > >> > >
> > > > > > > > >> >
> > > > > > > > >> >
> > > > > > > > >> >
> > > > > > > > >> >
> > > > > > > > >>
> > > > > > > > >>
> > > > > > > > >>
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > >
------------------------------------------------
Subject: data_line.cc
From: Howard Soh
Time: Tue May 21 18:33:59 2019
// *=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*
// ** Copyright UCAR (c) 1992 - 2019
// ** University Corporation for Atmospheric Research (UCAR)
// ** National Center for Atmospheric Research (NCAR)
// ** Research Applications Lab (RAL)
// ** P.O.Box 3000, Boulder, Colorado, 80307-3000, USA
// *=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*=*
////////////////////////////////////////////////////////////////////////
using namespace std;
#include <iostream>
#include <fstream>
#include <sys/types.h>
#include <sys/stat.h>
#include <unistd.h>
#include <stdlib.h>
#include <string.h>
#include <ctype.h>
#include <dirent.h>
#include <cstdio>
#include <cmath>
#include "vx_util.h"
#include "data_line.h"
#include "vx_log.h"
////////////////////////////////////////////////////////////////////////
//
// Code for class DataLine
//
////////////////////////////////////////////////////////////////////////
DataLine::DataLine()
{
init_from_scratch();
}
////////////////////////////////////////////////////////////////////////
DataLine::~DataLine()
{
LineNumber = N_items = N_ints = N_chars = 0;
File = (LineDataFile *) 0;
}
////////////////////////////////////////////////////////////////////////
DataLine::DataLine(const DataLine & a)
{
init_from_scratch();
assign(a);
}
////////////////////////////////////////////////////////////////////////
DataLine & DataLine::operator=(const DataLine & a)
{
if ( this == &a ) return ( * this );
assign(a);
return ( * this );
}
////////////////////////////////////////////////////////////////////////
void DataLine::init_from_scratch()
{
LineNumber = N_items = 0;
N_items = 0;
N_chars = N_ints = 0;
Delimiter.assign(dataline_default_delim);
File = (LineDataFile *) 0;
return;
}
////////////////////////////////////////////////////////////////////////
void DataLine::clear()
{
Line.clear();
Items.clear();
Offset.clear();
LineNumber = 0;
N_items = 0;
File = (LineDataFile *) 0;
return;
}
////////////////////////////////////////////////////////////////////////
void DataLine::assign(const DataLine & a)
{
clear();
//extend_char(a.N_chars);
Line = a.Line;
Items = a.Items;
//extend_int(a.N_items);
Offset = a.Offset;
N_items = a.N_items;
LineNumber = a.LineNumber;
File = a.File;
return;
}
////////////////////////////////////////////////////////////////////////
void DataLine::dump(ostream & out, int depth) const
{
int j;
//char junk[256];
Indent prefix(depth);
out << prefix << "N_items = " << N_items << "\n";
out << prefix << "N_chars = " << N_chars << "\n";
out << prefix << "N_ints = " << N_ints << "\n";
out << prefix << "LineNumber = " << LineNumber << "\n";
out << prefix << "\n";
if ( N_items == 0 ) { out.flush(); return; }
std::ostringstream sstream;
sstream.width(2);
for (j=0; j<N_items; ++j) {
//snprintf(junk, sizeof(junk), "Item[%2d] = \"", j);
sstream << "Item[" << j << "] = \"";
out << prefix << sstream.str() << Line.substr(j) << "\"\n";
if ( (j%5) == 4 ) out << prefix << "\n";
}
out << prefix << "\n";
sstream.str("");
sstream.clear();
for (j=0; j<N_items; ++j) {
//snprintf(junk, sizeof(junk), "Offset[%2d] = ", j);
sstream << "Offset[" << j << "] = ";
out << prefix << sstream.str() << Offset[j] << "\n";
if ( (j%5) == 4 ) out << prefix << "\n";
}
//
// done
//
out.flush();
return;
}
////////////////////////////////////////////////////////////////////////
const char * DataLine::get_item(int k) const
{
if ( (k < 0) || (k >= N_items) ) {
mlog << Error << "\nDataLine::get_item(int) -> range check
error\n\n";
exit ( 1 );
}
return Items[k].c_str();
}
////////////////////////////////////////////////////////////////////////
const LineDataFile * DataLine::get_file() const
{
return File;
}
////////////////////////////////////////////////////////////////////////
const char * DataLine::operator[](int k) const
{
const char * c = get_item(k);
return ( c );
}
////////////////////////////////////////////////////////////////////////
/*
void DataLine::extend_char(int n)
{
++n; // add room for trailing nul, if needed
if ( N_chars >= n ) return;
int k;
k = n/dataline_charextend_alloc_inc;
if ( n%dataline_charextend_alloc_inc ) ++k;
n = k*dataline_charextend_alloc_inc;
Line.reserve(n);
N_chars = n;
//
// done
//
return;
}
////////////////////////////////////////////////////////////////////////
void DataLine::extend_int(int n)
{
if ( N_ints >= n ) return;
int k;
k = n/dataline_intextend_alloc_inc;
if ( n%dataline_intextend_alloc_inc ) ++k;
n = k*dataline_intextend_alloc_inc;
Offset.reserve(n);
N_ints = n;
//
// done
//
return;
}
*/
////////////////////////////////////////////////////////////////////////
int DataLine::max_item_width() const
{
if ( Line.empty() ) return ( 0 );
int j, n, w;
n = 0;
for (j=0; j<N_items; ++j) {
w = Items[j].size();
if ( w > n ) n = w;
}
return ( n );
}
////////////////////////////////////////////////////////////////////////
int DataLine::read_line(LineDataFile * ldf)
{
clear();
ifstream & f = *(ldf->in);
if ( !f ) return ( 0 );
File = ldf;
char c;
size_t pos, count;
//
// get a line from the file
//
pos = 0;
count = 0;
while ( f.get(c) ) {
if ( !f ) { clear(); return ( 0 ); }
//extend_char(pos + 5); // better safe than sorry
if ( c == '\n' ) { break; }
Line += c;
}
if ( !f ) { clear(); return ( 0 ); }
//
// parse the line with strtok
//
size_t len, tpos = std::string::npos;
if (!Line.find_first_not_of(Delimiter)) { // no leading delimiter
++count;
//extend_int(count);
Offset.push_back(pos);
Items.push_back(Line.substr(pos, Line.find_first_of(Delimiter,
pos) - pos));
}
while ((tpos = Line.substr(pos).find_first_of(Delimiter)) !=
std::string::npos) {
len = Line.substr(pos+tpos).find_first_not_of(Delimiter);
if (len == std::string::npos) // delims at the end of the line,
or delim-only line
break;
pos += tpos + len;
++count;
//extend_int(count);
Offset.push_back(pos);
Items.push_back(Line.substr(pos, Line.find_first_of(Delimiter,
pos) - pos));
}
N_items = count;
LineNumber = ldf->last_line_number() + 1;
return ( 1 );
}
////////////////////////////////////////////////////////////////////////
int DataLine::read_fwf_line(LineDataFile * ldf, const int *wdth, int
n_wdth)
{
clear();
ifstream & f = *(ldf->in);
if ( !f ) return ( 0 );
File = ldf;
int i, j;
char buf[max_str_len];
char c;
int start, pos, count;
int null_char_count;
//
// get a line from the file using the specified widths
//
null_char_count = pos = count = 0;
for( i=0; i<n_wdth; i++ ) {
if ( !f ) { clear(); return ( 0 ); }
//extend_char(pos + wdth[i] + 1); // better safe than sorry
//extend_int(++count);
++count;
//
// get the next entry
//
f.read(buf, wdth[i]);
//
// store the offset to this entry
//
start = pos;
Offset.push_back(pos);
//
// store this entry
//
for( j=0; j<wdth[i]; j++ ) {
Line += buf[j]; pos++;
//
// check for embedded newline
//
if(buf[j] == '\0') {
Line[pos-1] = ' ';
null_char_count++;
}
else if(buf[j] == '\n') {
mlog << Warning
<< "\nDataLine::read_fwf_line() -> "
<< "Encountered newline while parsing line "
<< ldf->last_line_number() + 1 << ".\n\n";
}
}
Items.push_back(Line.substr(start, pos-start));
//
// null terminate the entry
//
Line += '\0';
pos++;
}
if (null_char_count > 0)
mlog << Warning
<< "\nDataLine::read_fwf_line() -> "
<< "Encountered " << null_char_count << " null character"
<< (null_char_count==1?"":"s") << " while parsing line "
<< ldf->last_line_number() + 1 << ".\n\n";
//
// advance to the end of the line
//
while ( f.get(c) ) {
if ( !f ) { clear(); return ( 0 ); }
if ( c == '\n' ) break;
}
if ( !f ) { clear(); return ( 0 ); }
N_items = count;
LineNumber = ldf->last_line_number() + 1;
return ( 1 );
}
////////////////////////////////////////////////////////////////////////
int DataLine::is_ok() const
{
if ( N_items == 0 ) return ( 0 );
return ( 1 );
}
////////////////////////////////////////////////////////////////////////
int DataLine::is_header() const
{
return ( 0 );
}
////////////////////////////////////////////////////////////////////////
void DataLine::set_delimiter(const char *delimiter)
{
Delimiter.assign(delimiter);
}
////////////////////////////////////////////////////////////////////////
//
// Code for class LineDataFile
//
////////////////////////////////////////////////////////////////////////
LineDataFile::LineDataFile()
{
init_from_scratch();
}
////////////////////////////////////////////////////////////////////////
LineDataFile::~LineDataFile()
{
close();
}
////////////////////////////////////////////////////////////////////////
LineDataFile::LineDataFile(const LineDataFile &)
{
mlog << Error << "\nLineDataFile::LineDataFile(const LineDataFile &)
-> should never be called!\n\n";
exit ( 1 );
}
////////////////////////////////////////////////////////////////////////
LineDataFile & LineDataFile::operator=(const LineDataFile &)
{
mlog << Error << "\nLineDataFile::operator=(const LineDataFile &) ->
should never be called!\n\n";
exit ( 1 );
return ( * this );
}
////////////////////////////////////////////////////////////////////////
void LineDataFile::init_from_scratch()
{
in = (ifstream *) 0;
Last_Line_Number = 0;
Header.clear();
Header.set_ignore_case(true);
return;
}
////////////////////////////////////////////////////////////////////////
int LineDataFile::open(const char * path)
{
close();
in = new ifstream;
if ( !in ) {
mlog << Error << "\nLineDataFile::open(const char *) -> can't
allocate input stream\n\n";
exit ( 1 );
}
met_open((*in), path);
if ( !(*in) ) {
return ( 0 );
}
//
// get filename
//
int j, n;
n = strlen(path);
Filename.assign(path);
ShortFilename.assign(get_short_name(path));
//
// done
//
Last_Line_Number = 0;
return ( 1 );
}
////////////////////////////////////////////////////////////////////////
void LineDataFile::close()
{
if ( in ) {
in->close();
delete in; in = (ifstream *) 0;
}
Last_Line_Number = 0;
return;
}
////////////////////////////////////////////////////////////////////////
void LineDataFile::rewind()
{
//
// clear any error status and rewind to beginning
//
if ( in ) {
in->clear();
in->seekg(0, ios::beg);
Last_Line_Number = 0;
}
return;
}
////////////////////////////////////////////////////////////////////////
int LineDataFile::ok() const
{
if ( !in ) return ( 0 );
if ( !(*in) ) return ( 0 );
return ( 1 );
}
////////////////////////////////////////////////////////////////////////
int LineDataFile::operator>>(DataLine & a)
{
int status;
do {
status = a.read_line(this);
if ( !status ) return ( 0 );
++Last_Line_Number;
if ( a.is_header() ) set_header(a);
} while ( !(a.is_ok()) );
return ( 1 );
}
////////////////////////////////////////////////////////////////////////
void LineDataFile::set_header(DataLine & a)
{
int j;
Header.clear();
for (j=0; j<a.n_items(); ++j) {
Header.add(a.get_item(j));
}
return;
}
////////////////////////////////////////////////////////////////////////
int LineDataFile::read_fwf_line(DataLine & a, const int *wdth, int
n_wdth)
{
int status;
do {
status = a.read_fwf_line(this, wdth, n_wdth);
if ( !status ) return ( 0 );
++Last_Line_Number;
} while ( !(a.is_ok()) );
return ( 1 );
}
////////////////////////////////////////////////////////////////////////
//
// Code for misc functions
//
////////////////////////////////////////////////////////////////////////
ostream & operator<<(ostream & out, const DataLine & L)
{
if ( L.n_items() == 0 ) return ( out );
int j;
for (j = 0; j < L.Items.size(); j++) {
out << L.Items[j];
if (j < (L.Items.size() - 1))
out << ' ';
}
out.put('\n');
out.flush();
return ( out );
}
////////////////////////////////////////////////////////////////////////
Logger & operator<<(Logger & lgr, const DataLine & L)
{
if ( L.n_items() == 0 ) return ( lgr );
int j, k, N;
char c;
// k = L.N_items - 1; // last item
//
// N = L.Offset[k] + strlen(L[k]);
//
// for (j=0; j<N; ++j) {
//
// c = L.Line[j];
//
// //
// // patch the nul chars put there by strtok
// //
//
// if ( c == 0 ) lgr << ' ';
// else lgr << c;
//
// }
for (j = 0; j < L.Items.size(); j++) {
lgr << L.Items[j];
if (j < (L.Items.size() - 1))
lgr << ' ';
}
lgr << '\n';
return ( lgr );
}
////////////////////////////////////////////////////////////////////////
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Tue May 21 18:39:25 2019
No, that is not what I am asking. Every time I build, I use your
script which builds everything.
What I am asking is, did the versions of the external libraries
change?
Greg
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Tuesday, May 21, 2019 5:34 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Yes, the third party libraries should be compiled with newer version.
The compile error with gnu 7.3.0 happens with gnu 6.3.0, too.
The fix/patch is not ready officially. One file has to be corrected to
support newer version gnu compiler. Would you replace data_line.cc
with attached file or modify it manually?
Filename:
met-8.1/src/basic/vx_util/data_line.cc
line 202:
out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
out << prefix << sstream.str() << Line.substr(j) << "\"\n";
line 218:
out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
out << prefix << sstream.str() << Line.substr(j) << "\"\n";
Cheers,
Howard
On Tue May 21 18:21:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> Did new external libraries need to be built with 8.1?
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 16, 2019 4:01 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> No new tools but many enhancements.
>
> It's available at
> https://dtcenter.org/community-code/model-evaluation-tools-met/met-
> version-8-1
>
> Cheers,
> Howard
>
> On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > Maybe you can answer one question while I try to reinstall
> > everything. What features does 8.1 provide over 8.0?
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, May 16, 2019 2:46 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Would try this command at /software/depot/met-8.1/met-8.1/scripts
> > directory?
> >
> > 1. check the environtment variable LD_LIBRARY_PATH:
> > echo $LD_LIBRARY_PATH
> >
> > 2. Save LD_LIBRARY_PATH
> > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > OR
> > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> >
> > 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-2.4.0/lib
> >
> > 4. Check which libgfortran.so at /software/depot/met-8.1/met-
> > 8.1/scripts directory.
> >
> > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran OR ldd
> > ../bin/pb2nc | grep libgfortran
> >
> > 5. Check libgfortran version (should be libgfortran.so.3, not
so.4)
> >
> > 6. Run the failed command manually at /software/depot/met-8.1/met-
> > 8.1/scripts directory if libgfortran.so.3.
> >
> > ../src/tools/other/pb2nc/pb2nc \
> >
> > ../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > \
> > ../out/pb2nc/sample_pb.nc \
> > config/PB2NCConfig_G212 \
> > -v 2
> >
> > 7. Change back LD_LIBRARY_PATH
> > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > OR
> > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> >
> > Cheers,
> > Howard
> >
> >
> > On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-grib2-
support
> > > [ramos at lorenz bin]$ ldd modis_regrid
> > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003453800000)
> > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > > libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> > > libpng16.so.16 => /software/depot/met-
> > > 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> > > libz.so.1 => /software/depot/met-
8.1/external_libs/lib/libz.so.1
> > > (0x00007f7f19af4000)
> > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > 8.1/external_libs/lib/libnetcdf_c++4.so.1 (0x00007f7f198a6000)
> > > libnetcdf.so.11 => /software/depot/met-
> > > 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> > > libgsl.so.19 => /software/depot/met-
> > > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > > libgslcblas.so.0 => /software/depot/met-
> > > 8.1/external_libs/lib/libgslcblas.so.0 (0x00007f7f18eeb000)
> > > libjpeg.so.9 => /software/depot/anaconda-
2.4.0/lib/libjpeg.so.9
> > > (0x00007f7f18c99000)
> > > libstdc++.so.6 => /software/depot/anaconda-
> > > 2.4.0/lib/libstdc++.so.6
> > > (0x00007f7f18b58000)
> > > libgcc_s.so.1 =>
> > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > (0x00007f7f18b42000)
> > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > libhdf5_hl.so.10 => /software/depot/met-
> > > 8.1/external_libs/lib/libhdf5_hl.so.10 (0x00007f7f18922000)
> > > libhdf5.so.10 => /software/depot/met-
> > > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > > [ramos at lorenz bin]$
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, May 16, 2019 1:35 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > MET is expecting "libpython2.7.so" to enable python support.
> > >
> > > A log message shows the python was not enabled. Is python
> > > supporting is critical?
> > >
> > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > --enable-lidar2nc > configure.log 2>&1
> > >
> > > If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> > > 1. Make sure python is not enabled
> > > no "--enable-python" option for ./configure
> > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
> > > LD_LIBRARY_PATH at the build time and runtime both.
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > I was able to compile Met 8.0 on our Cray with:
> > > >
> > > > ramos at leo1:~> gcc --version
> > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright (C) 2017 Free
> > > > Software Foundation, Inc.
> > > > This is free software; see the source for copying conditions.
> > > > There
> > > > is NO
> > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > PARTICULAR PURPOSE.
> > > >
> > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC) 7.3.0
> > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free Software
> > > > Foundation, Inc.
> > > > This is free software; see the source for copying conditions.
> > > > There
> > > > is NO
> > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > PARTICULAR PURPOSE.
> > > >
> > > > ramos at leo1:~>
> > > >
> > > > We don't have that version on our Red Hat systems. Met 8.0
> > > > worked on RH, but 8.1 failed on the 'make test'. The user says
> > > > she is fine with the executables so far. I will have to build
a
> > > > gfortran 7.x version.
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > > Prestopnik
> > > >
> > > > Hello,
> > > >
> > > > Is gcc/gfortran 7.x compiler available?
> > > >
> > > > The problem was caused by the path for python library
> > > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4 exists
> > > > there
> > > > from the ldd output. It was used on building MET. MET was
> > > > compiled
> > > > with gcc 4.4.7 which supports only libgfortran.so.3, and
linked
> > > > with
> > > > libgfortran.so.4 because of MET_PYTHON_LD configuration. Some
> > > > libraries do not support the backward compatibility.
> > > > libgfortran.so
> > > > is
> > > > one of them. In this case, the compiler version and library
> > > > version
> > > > should match.
> > > >
> > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
8.1/bin/pb2nc
> > > > |grep
> > > > gfortran
> > > > libgfortran.so.4 => /software/depot/anaconda-
> > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > >
> > > > export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\ -export-
> > > > dynamic
> > > >
> > > > The solution is compiling third party libraries and MET with
> > > > version
> > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > > libgfortran.so.5,
> > > > So the same problem will happen if MET is built with
gcc/gfortran
> > > > 6.x
> > > > or gcc/gfortran 8.x.
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > > On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > Attached is the config.log for NetCDf it shows /usr/bin/gcc
> > > > >
> > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat
version.
> > > > >
> > > > > -----Original Message-----
> > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > Julie
> > > > > Prestopnik
> > > > >
> > > > > Thank you. Unfortunately, that does not tell me if the
> > > > > libraries
> > > > > and
> > > > > the
> > > > > MET code were built with the same version of the compiler.
I
> > > > > also
> > > > > do
> > > > > not
> > > > > see bufrlib in that list.
> > > > >
> > > > > Can you please tell me - were the libraries and the MET code
> > > > > built
> > > > > with the
> > > > > same version of the compiler? I'm checking to see if, for
> > > > > example,
> > > > > the
> > > > > libraries were built with gcc-6.3.0 but the MET code was
build
> > > > > with
> > > > > gcc-4.4.7.
> > > > >
> > > > > Thanks!
> > > > >
> > > > > Julie
> > > > >
> > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
Contractor,
> > > > > Code
> > > > > 7501.1
> > > > > via RT <met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >
> > > > > >
> > > > > > You can see I am using those libraries for MET 8.1:
> > > > > >
> > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > > libpython2.7.so.1.0 =>
> > > > > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > > > > (0x00002ab75e1f3000)
> > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > (0x00002ab75e63b000)
> > > > > > libdl.so.2 => /lib64/libdl.so.2
(0x00002ab75e858000)
> > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > (0x00002ab75ea5c000)
> > > > > > libpng16.so.16 =>
> > > > > > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > > > > > (0x00002ab75ec60000)
> > > > > > libz.so.1 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > (0x00002ab75ee92000)
> > > > > > libm.so.6 => /lib64/libm.so.6 (0x00002ab75f0aa000)
> > > > > > libnetcdf_c++4.so.1 =>
> > > > > > /software/depot/met-
8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > (0x00002ab75f32f000)
> > > > > > libnetcdf.so.11 =>
> > > > > > /software/depot/met-8.1/external_libs/lib/libnetcdf.so.11
> > > > > > (0x00002ab75f57c000)
> > > > > > libgsl.so.19 =>
> > > > > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > > > > (0x00002ab75f8bb000)
> > > > > > libgslcblas.so.0 =>
> > > > > > /software/depot/met-8.1/external_libs/lib/libgslcblas.so.0
> > > > > > (0x00002ab75fcfe000)
> > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > (0x00002ab75ff37000)
> > > > > > libstdc++.so.6 =>
> > > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > > (0x00002ab760189000)
> > > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > (0x00002ab7602cb000)
> > > > > > libc.so.6 => /lib64/libc.so.6 (0x00002ab7602e0000)
> > > > > > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > > > > > libhdf5_hl.so.10 =>
> > > > > > /software/depot/met-8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > (0x00002ab760675000)
> > > > > > libhdf5.so.10 =>
> > > > > > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > > > > > (0x00002ab760894000)
> > > > > > librt.so.1 => /lib64/librt.so.1
(0x00002ab760d6f000)
> > > > > > [root at maury2 bin]#
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Thank you, Greg. Can you please tell me - were the
libraries
> > > > > > and
> > > > > > the
> > > > > > MET
> > > > > > code built with the same version of the compiler. I'm
> > > > > > checking
> > > > > > to
> > > > > > see if,
> > > > > > for example, the libraries were built with gcc-6.3.0 but
the
> > > > > > MET
> > > > > > code
> > > > > > was
> > > > > > build with gcc-4.4.7.
> > > > > >
> > > > > > It sounds like we need the libraries and the MET code to
be
> > > > > > built
> > > > > > with the
> > > > > > same version of the compiler, in this case.
> > > > > >
> > > > > > Thanks for any information you can provide.
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
> > > > > > Contractor,
> > > > > > Code
> > > > > > 7501.1
> > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
> > > > > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >
> > > > > > >
> > > > > > > Find the logs attached.
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
> > > > > > > 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Could you please run the following:
> > > > > > >
> > > > > > > which pb2nc
> > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > >
> > > > > > > and send me the output?
> > > > > > >
> > > > > > > Please also send your config.log and make.log file.
> > > > > > >
> > > > > > > Thank you!
> > > > > > >
> > > > > > > Julie
> > > > > > >
> > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
> > > > > > > Contractor,
> > > > > > > Code
> > > > > > 7501.1
> > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > <URL:
> > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >
> > > > > > > >
> > > > > > > > I used the buildscript. It should build all of the
> > > > > > > > external
> > > > > > > > libraries,
> > > > > > so
> > > > > > > > I believe everything was built with the same compiler.
> > > > > > > >
> > > > > > > > Greg
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > 8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Hi Greg. Our developer suspects it may be a
mismatched
> > > > > > compiler/library
> > > > > > > > version. Was BUFRLIB installed with the same
compiler
> > > > > > > > as
> > > > > > > > MET?
> > > > > > > > Also,
> > > > > > > what
> > > > > > > > version of BURRLIB are you using?
> > > > > > > >
> > > > > > > > Thanks,
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > > > > <jpresto at ucar.edu>
> > > > > > > > wrote:
> > > > > > > >
> > > > > > > > > Hi Greg. I am checking in with another developer
> > > > > > > > > regarding
> > > > > > > > > the
> > > > > > > > > error
> > > > > > > you
> > > > > > > > > experienced. Thank you for your patience.
> > > > > > > > >
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr. Gregory,
> > > > > > > > > Contractor,
> > > > > > > > > Code
> > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > >
> > > > > > > > >>
> > > > > > > > >> <URL:
> > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >> >
> > > > > > > > >>
> > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > >>
> > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > > > > > >> This is free software; see the source for copying
> > > > > > > > >> conditions.
> > > > > > > > >> There
> > > > > > > is
> > > > > > > > NO
> > > > > > > > >> warranty; not even for MERCHANTABILITY or FITNESS
FOR
> > > > > > > > >> A
> > > > > > > > >> PARTICULAR
> > > > > > > > >> PURPOSE.
> > > > > > > > >>
> > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > >>
> > > > > > > > >> Not all of the tests passed, please see attachment.
> > > > > > > > >>
> > > > > > > > >> Greg
> > > > > > > > >>
> > > > > > > > >> -----Original Message-----
> > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > >> MET
> > > > > > > > >> 8.1
> > > > > > > > >> Julie
> > > > > > > > >> Prestopnik
> > > > > > > > >>
> > > > > > > > >> Thank you for letting me know. I will proceed with
> > > > > > > > >> trying
> > > > > > > > >> to
> > > > > > > reproduce
> > > > > > > > >> the
> > > > > > > > >> problem using the gcc-6.3.0. I will follow up once
I
> > > > > > > > >> have
> > > > > > > > >> more
> > > > > > > > >> information.
> > > > > > > > >>
> > > > > > > > >> Julie
> > > > > > > > >>
> > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr. Gregory,
> > > > > > > > >> Contractor,
> > > > > > > > >> Code
> > > > > > > > 7501.1
> > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > >>
> > > > > > > > >> >
> > > > > > > > >> > <URL:
> > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >> > >
> > > > > > > > >> >
> > > > > > > > >> > When I compiled MET 8.0 the last time, it worked.
I
> > > > > > > > >> > was
> > > > > > > > >> > also
> > > > > > > > >> > able
> > > > > > to
> > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > >> >
> > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > >> > Password:
> > > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
199.9.0.18
> > > > > > > > >> >
> > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > > >> >
> > > > > > > > >> > You are accessing a U.S. Government (USG)
> > > > > > > > >> > Information
> > > > > > > > >> > System
> > > > > > > > >> > (IS)
> > > > > > > that
> > > > > > > > >> is
> > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > >> > By using this IS (which includes any device
attached
> > > > > > > > >> > to
> > > > > > > > >> > this
> > > > > > > > >> > IS),
> > > > > > > you
> > > > > > > > >> > consent to the following conditions:
> > > > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > > > >> > communications
> > > > > > > > >> > on
> > > > > > > > >> > this
> > > > > > IS
> > > > > > > > for
> > > > > > > > >> > purposes including, but not limited to,
> > > > > > > > >> > penetration testing, COMSEC monitoring, network
> > > > > > > > >> > operations
> > > > > > > > >> > and
> > > > > > > > defense,
> > > > > > > > >> > personnel misconduct (PM), law enforcement (LE),
> > > > > > > > >> > and counterintelligence (CI) investigations.
> > > > > > > > >> > -At any time, the USG may inspect and seize data
> > > > > > > > >> > stored
> > > > > > > > >> > on
> > > > > > > > >> > this
> > > > > > IS.
> > > > > > > > >> > -Communications using, or data stored on, this IS
> > > > > > > > >> > are
> > > > > > > > >> > not
> > > > > > > > >> > private,
> > > > > > > are
> > > > > > > > >> > subject to routine monitoring, interception,
> > > > > > > > >> > and search, and may be disclosed or used for any
> > > > > > > > >> > USG-
> > > > > > > > >> > authorized
> > > > > > > > purpose.
> > > > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > > > >> > authentication
> > > > > > > > >> > and
> > > > > > access
> > > > > > > > >> > controls) to protect USG interests -- not for
> > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > >> > -Notwithstanding the above, using this IS does
not
> > > > > > > > >> > constitute
> > > > > > > consent
> > > > > > > > to
> > > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > > >> > monitoring of the content of privileged
> > > > > > > > >> > communications,
> > > > > > > > >> > or
> > > > > > > > >> > work
> > > > > > > > product,
> > > > > > > > >> > related to personal representation or
> > > > > > > > >> > services by attorneys, psychotherapists, or
clergy,
> > > > > > > > >> > and
> > > > > > > > >> > their
> > > > > > > > >> assistants.
> > > > > > > > >> > Such communications and work product are
> > > > > > > > >> > private and confidential. See User Agreement for
> > > > > > > > >> > details.
> > > > > > > > >> >
> > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > >> > ramos at leo1:~>
> > > > > > > > >> >
> > > > > > > > >> > -----Original Message-----
> > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > >> > MET
> > > > > > > > >> > 8.1
> > > > > > Julie
> > > > > > > > >> > Prestopnik
> > > > > > > > >> >
> > > > > > > > >> > Hi Gregory. I have not tested with version 6.3.0
of
> > > > > > > > >> > the
> > > > > > > > >> > gcc
> > > > > > > compiler,
> > > > > > > > >> but
> > > > > > > > >> > rather only with lower versions (specifically
> > > > > > > > >> > 4.8.5).
> > > > > > > > >> > We
> > > > > > > > >> > would,
> > > > > > of
> > > > > > > > >> course,
> > > > > > > > >> > want our code to work with higher versions as
well.
> > > > > > > > >> > I
> > > > > > > > >> > have
> > > > > > > > >> > not
> > > > > > yet
> > > > > > > > had
> > > > > > > > >> an
> > > > > > > > >> > opportunity to test with a higher version like
> > > > > > > > >> > 6.3.0.
> > > > > > > > >> > Do
> > > > > > > > >> > you have
> > > > > > > the
> > > > > > > > >> > ability to compile MET using a lesser version of
the
> > > > > > > > >> > gcc
> > > > > > > > >> > compiler
> > > > > > to
> > > > > > > > >> see if
> > > > > > > > >> > that clears up the issues you are experiencing?
> > > > > > > > >> >
> > > > > > > > >> > Julie
> > > > > > > > >> >
> > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr.
Gregory,
> > > > > > > > >> > Contractor,
> > > > > > Code
> > > > > > > > >> 7501.1
> > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > >> >
> > > > > > > > >> > >
> > > > > > > > >> > > <URL:
> > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >> > > >
> > > > > > > > >> > >
> > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > >> > >
> > > > > > > > >> > > Greg
> > > > > > > > >> > >
> > > > > > > > >> > > -----Original Message-----
> > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > >> > > regarding
> > > > > > > > >> > > MET
> > > > > > > > >> > > 8.1
> > > > > > > Julie
> > > > > > > > >> > > Prestopnik
> > > > > > > > >> > >
> > > > > > > > >> > > Hi Greg. Thank you for passing along your
> > > > > > > > >> > > config.log
> > > > > > > > >> > > file. I
> > > > > > > see a
> > > > > > > > >> > couple
> > > > > > > > >> > > of linker problems in there:
> > > > > > > > >> > >
> > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > >> > >
> > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > >> > >
> > > > > > > > >> > > Based on those errors, it looks like you may
not
> > > > > > > > >> > > have
> > > > > > > > >> > > flex
> > > > > > > > >> > > and
> > > > > > > bison
> > > > > > > > >> > > installed. Please install those and try
running
> > > > > > > > >> > > configure
> > > > > > again.
> > > > > > > > >> Please
> > > > > > > > >> > > let us know how it goes.
> > > > > > > > >> > >
> > > > > > > > >> > > Also, I just wanted to address one other thing.
> > > > > > > > >> > > In
> > > > > > > > >> > > your
> > > > > > original
> > > > > > > > >> email
> > > > > > > > >> > you
> > > > > > > > >> > > listed the following as part of your "MET
> > > > > > > > >> > > Configuration
> > > > > > settings":
> > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread -ldl
> > > > > > > > >> > > -lutil
> > > > > > > > >> > > -lm
> > > > > > > -Xlinker
> > > > > > > > >> > > -export-dynamic
> > > > > > > > >> > >
> > > > > > > > >> > > However, in your config.log file it looks like
> > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > >> actually
> > > > > > > > >> > > set to be "-L/software/depot/anaconda-2.4.0/lib
> > > > > > > > >> > > -lpython2.7
> > > > > > > > -lpthread
> > > > > > > > >> > -ldl
> > > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which is
> > > > > > > > >> > > correct
> > > > > > > > >> > > because
> > > > > > you
> > > > > > > > >> need
> > > > > > > > >> > to
> > > > > > > > >> > > have that -L part in there, so I just want to
> > > > > > > > >> > > ensure
> > > > > > > > >> > > that
> > > > > > > > >> > > will
> > > > > > > stay
> > > > > > > > >> there
> > > > > > > > >> > > when you run configure again.
> > > > > > > > >> > >
> > > > > > > > >> > > Thanks,
> > > > > > > > >> > > Julie
> > > > > > > > >> > >
> > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr.
Gregory,
> > > > > > > > >> > > Contractor,
> > > > > > > Code
> > > > > > > > >> > 7501.1
> > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > >> > >
> > > > > > > > >> > > >
> > > > > > > > >> > > > <URL:
> > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > >
> > > > > > > > >> > > >
> > > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > > >> > > >
> > > > > > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > >> > > >
> > > > > > > > >> > > >
> > > > > > > > >> > > > -----Original Message-----
> > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > >> > > > regarding
> > > > > > > > >> > > > MET
> > > > > > > > >> > > > 8.1
> > > > > > > > Julie
> > > > > > > > >> > > > Prestopnik
> > > > > > > > >> > > >
> > > > > > > > >> > > > Hi Greg,
> > > > > > > > >> > > >
> > > > > > > > >> > > > I'll go ahead and assign this ticket to
Julie,
> > > > > > > > >> > > > and
> > > > > > > > >> > > > she
> > > > > > > > >> > > > should
> > > > > > be
> > > > > > > > >> > writing
> > > > > > > > >> > > > you back in the next couple of days.
> > > > > > > > >> > > >
> > > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > > >> > > > "configure.log"
> > > > > > > > >> > > > file you
> > > > > > > > >> > generated
> > > > > > > > >> > > as
> > > > > > > > >> > > > well as the "config.log" file from that same
> > > > > > > > >> > > > directory.
> > > > > > > > >> > > > So
> > > > > > > please
> > > > > > > > >> send
> > > > > > > > >> > > > those along when you get a chance.
> > > > > > > > >> > > >
> > > > > > > > >> > > > Thanks,
> > > > > > > > >> > > > John
> > > > > > > > >> > > >
> > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr.
> > > > > > > > >> > > > Gregory,
> > > > > > > > >> > > > Contractor,
> > > > > > > > Code
> > > > > > > > >> > > 7501.1
> > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > >> > > >
> > > > > > > > >> > > > >
> > > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091 was
> > > > > > > > >> > > > > acted
> > > > > > > > >> > > > > upon.
> > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > >> > > > > Queue: met_help
> > > > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
> > > > > > > > >> > > > > Prestopnik
> > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > >> > > > > Requestors: Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > >> > > > > Status: new
> > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >> > > >
> > > > > > > > >> > > > >
> > > > > > > > >> > > > >
> > > > > > > > >> > > > > Julie helped me compiled 8.0 using gcc
6.3.0
> > > > > > > > >> > > > > and
> > > > > > > > >> > > > > Anaconda
> > > > > > > 2.4.0.
> > > > > > > > >> The
> > > > > > > > >> > > user
> > > > > > > > >> > > > > asked for 8.1. I took notes last time, but
> > > > > > > > >> > > > > running
> > > > > > > > >> > > > > into
> > > > > > > > problems:
> > > > > > > > >> > > > >
> > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > >> > > > > export MET_FONT_DIR=/software/depot/met-
> > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > >> > > > > export
> > > > > > > > >> > > > >
> > > > > > > > >> >
> > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > >> > > > > export
> > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > >> > > > > export
> > > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
> > > > > > > > >> > > > > -Wstrict-
> > > > > > > > >> > > > > prototypes
> > > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > >> > > > > export
> > > > > > > > >> > > > >
> > > > > > > > >> > > >
> > > > > > > > >> > >
> > > > > > > > >> >
> > > > > > > > >>
> > > > > > > >
> > > > > > >
> > > > > > MET_TARBALL=/software/depot/met-
> > > > > > 8.1/tar_files//software/depot/met-
> > > > > > 8.1/tar_files.tar
> > > > > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > >> > > > > export
> > > > > > > MET_FREETYPELIB=/software/depot/met-
8.1/external_libs/lib
> > > > > > > > >> > > > > export
> > > > > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7 -lpthread
> > > > > > > > >> > > > > -ldl
> > > > > > > > >> > > > > -lutil
> > > > > > > > >> > > > > -lm
> > > > > > > > >> -Xlinker
> > > > > > > > >> > > > > -export-dynamic
> > > > > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > >> > > > > export MET_SUBDIR=/software/depot/met-
8.1/met-
> > > > > > > > >> > > > > 8.1
> > > > > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > > >> > > > > ./configure --prefix=/software/depot/met-
> > > > > > > > >> > > > > 8.1/met-
> > > > > > > > >> > > > > 8.1
> > > > > > > > >> --enable-grib2
> > > > > > > > >> > > > > --enable-modis --enable-mode_graphics
> > > > > > > > >> > > > > --enable-
> > > > > > > > >> > > > > lidar2nc >
> > > > > > > > >> > > configure.log
> > > > > > > > >> > > > > 2> &1
> > > > > > > > >> > > > > configure returned with non-zero (127)
status
> > > > > > > > >> > > > >
> > > > > > > > >> > > > >
> > > > > > > > >> > > >
> > > > > > > > >> > > >
> > > > > > > > >> > > >
> > > > > > > > >> > >
> > > > > > > > >> > >
> > > > > > > > >> > >
> > > > > > > > >> > >
> > > > > > > > >> >
> > > > > > > > >> >
> > > > > > > > >> >
> > > > > > > > >> >
> > > > > > > > >>
> > > > > > > > >>
> > > > > > > > >>
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > >
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Howard Soh
Time: Tue May 21 18:49:56 2019
No, external libraries are not changed.
Personally, I'm using newer NetCDF library (4.6.x instead of 4.4.1.1).
Cheers,
Howard
On Tue May 21 18:39:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> No, that is not what I am asking. Every time I build, I use your
> script which builds everything.
>
> What I am asking is, did the versions of the external libraries
> change?
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Tuesday, May 21, 2019 5:34 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Yes, the third party libraries should be compiled with newer
version.
>
> The compile error with gnu 7.3.0 happens with gnu 6.3.0, too.
> The fix/patch is not ready officially. One file has to be corrected
> to support newer version gnu compiler. Would you replace
data_line.cc
> with attached file or modify it manually?
>
> Filename:
> met-8.1/src/basic/vx_util/data_line.cc
>
> line 202:
>
> out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> out << prefix << sstream.str() << Line.substr(j) << "\"\n";
>
> line 218:
>
> out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> out << prefix << sstream.str() << Line.substr(j) << "\"\n";
>
> Cheers,
> Howard
>
> On Tue May 21 18:21:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > Did new external libraries need to be built with 8.1?
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, May 16, 2019 4:01 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > No new tools but many enhancements.
> >
> > It's available at
> > https://dtcenter.org/community-code/model-evaluation-tools-
met/met-
> > version-8-1
> >
> > Cheers,
> > Howard
> >
> > On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > Maybe you can answer one question while I try to reinstall
> > > everything. What features does 8.1 provide over 8.0?
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, May 16, 2019 2:46 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > Would try this command at /software/depot/met-8.1/met-
8.1/scripts
> > > directory?
> > >
> > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > echo $LD_LIBRARY_PATH
> > >
> > > 2. Save LD_LIBRARY_PATH
> > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > OR
> > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > >
> > > 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-
2.4.0/lib
> > >
> > > 4. Check which libgfortran.so at /software/depot/met-8.1/met-
> > > 8.1/scripts directory.
> > >
> > > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran OR ldd
> > > ../bin/pb2nc | grep libgfortran
> > >
> > > 5. Check libgfortran version (should be libgfortran.so.3, not
so.4)
> > >
> > > 6. Run the failed command manually at /software/depot/met-
8.1/met-
> > > 8.1/scripts directory if libgfortran.so.3.
> > >
> > > ../src/tools/other/pb2nc/pb2nc \
> > >
> > > ../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > \
> > > ../out/pb2nc/sample_pb.nc \
> > > config/PB2NCConfig_G212 \
> > > -v 2
> > >
> > > 7. Change back LD_LIBRARY_PATH
> > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > OR
> > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > >
> > > Cheers,
> > > Howard
> > >
> > >
> > > On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-grib2-
> > > > support
> > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > libpthread.so.0 => /lib64/libpthread.so.0
(0x0000003453800000)
> > > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > > > libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> > > > libpng16.so.16 => /software/depot/met-
> > > > 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> > > > libz.so.1 => /software/depot/met-
> > > > 8.1/external_libs/lib/libz.so.1
> > > > (0x00007f7f19af4000)
> > > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1 (0x00007f7f198a6000)
> > > > libnetcdf.so.11 => /software/depot/met-
> > > > 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> > > > libgsl.so.19 => /software/depot/met-
> > > > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > > > libgslcblas.so.0 => /software/depot/met-
> > > > 8.1/external_libs/lib/libgslcblas.so.0 (0x00007f7f18eeb000)
> > > > libjpeg.so.9 => /software/depot/anaconda-
2.4.0/lib/libjpeg.so.9
> > > > (0x00007f7f18c99000)
> > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > 2.4.0/lib/libstdc++.so.6
> > > > (0x00007f7f18b58000)
> > > > libgcc_s.so.1 =>
> > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > (0x00007f7f18b42000)
> > > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > 8.1/external_libs/lib/libhdf5_hl.so.10 (0x00007f7f18922000)
> > > > libhdf5.so.10 => /software/depot/met-
> > > > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > > > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > > > [ramos at lorenz bin]$
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > Prestopnik
> > > >
> > > > MET is expecting "libpython2.7.so" to enable python support.
> > > >
> > > > A log message shows the python was not enabled. Is python
> > > > supporting is critical?
> > > >
> > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > > --enable-lidar2nc > configure.log 2>&1
> > > >
> > > > If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> > > > 1. Make sure python is not enabled
> > > > no "--enable-python" option for ./configure
> > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
> > > > LD_LIBRARY_PATH at the build time and runtime both.
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > > On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > I was able to compile Met 8.0 on our Cray with:
> > > > >
> > > > > ramos at leo1:~> gcc --version
> > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright (C) 2017
Free
> > > > > Software Foundation, Inc.
> > > > > This is free software; see the source for copying
conditions.
> > > > > There
> > > > > is NO
> > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > PARTICULAR PURPOSE.
> > > > >
> > > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC) 7.3.0
> > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free Software
> > > > > Foundation, Inc.
> > > > > This is free software; see the source for copying
conditions.
> > > > > There
> > > > > is NO
> > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > PARTICULAR PURPOSE.
> > > > >
> > > > > ramos at leo1:~>
> > > > >
> > > > > We don't have that version on our Red Hat systems. Met 8.0
> > > > > worked on RH, but 8.1 failed on the 'make test'. The user
says
> > > > > she is fine with the executables so far. I will have to
build a
> > > > > gfortran 7.x version.
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > Hello,
> > > > >
> > > > > Is gcc/gfortran 7.x compiler available?
> > > > >
> > > > > The problem was caused by the path for python library
> > > > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4
exists
> > > > > there
> > > > > from the ldd output. It was used on building MET. MET was
> > > > > compiled
> > > > > with gcc 4.4.7 which supports only libgfortran.so.3, and
linked
> > > > > with
> > > > > libgfortran.so.4 because of MET_PYTHON_LD configuration.
Some
> > > > > libraries do not support the backward compatibility.
> > > > > libgfortran.so
> > > > > is
> > > > > one of them. In this case, the compiler version and library
> > > > > version
> > > > > should match.
> > > > >
> > > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
8.1/bin/pb2nc
> > > > > |grep
> > > > > gfortran
> > > > > libgfortran.so.4 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > >
> > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\
-export-
> > > > > dynamic
> > > > >
> > > > > The solution is compiling third party libraries and MET with
> > > > > version
> > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > > > libgfortran.so.5,
> > > > > So the same problem will happen if MET is built with
> > > > > gcc/gfortran
> > > > > 6.x
> > > > > or gcc/gfortran 8.x.
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > > On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > Attached is the config.log for NetCDf it shows
/usr/bin/gcc
> > > > > >
> > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat
version.
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Thank you. Unfortunately, that does not tell me if the
> > > > > > libraries
> > > > > > and
> > > > > > the
> > > > > > MET code were built with the same version of the compiler.
I
> > > > > > also
> > > > > > do
> > > > > > not
> > > > > > see bufrlib in that list.
> > > > > >
> > > > > > Can you please tell me - were the libraries and the MET
code
> > > > > > built
> > > > > > with the
> > > > > > same version of the compiler? I'm checking to see if, for
> > > > > > example,
> > > > > > the
> > > > > > libraries were built with gcc-6.3.0 but the MET code was
> > > > > > build
> > > > > > with
> > > > > > gcc-4.4.7.
> > > > > >
> > > > > > Thanks!
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
> > > > > > Contractor,
> > > > > > Code
> > > > > > 7501.1
> > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
> > > > > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >
> > > > > > >
> > > > > > > You can see I am using those libraries for MET 8.1:
> > > > > > >
> > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > > > libpython2.7.so.1.0 =>
> > > > > > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > > > > > (0x00002ab75e1f3000)
> > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > (0x00002ab75e63b000)
> > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > (0x00002ab75e858000)
> > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > (0x00002ab75ea5c000)
> > > > > > > libpng16.so.16 =>
> > > > > > > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > > > > > > (0x00002ab75ec60000)
> > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > (0x00002ab75ee92000)
> > > > > > > libm.so.6 => /lib64/libm.so.6
(0x00002ab75f0aa000)
> > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > (0x00002ab75f32f000)
> > > > > > > libnetcdf.so.11 =>
> > > > > > > /software/depot/met-
8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > (0x00002ab75f57c000)
> > > > > > > libgsl.so.19 =>
> > > > > > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > > > > > (0x00002ab75f8bb000)
> > > > > > > libgslcblas.so.0 =>
> > > > > > > /software/depot/met-
8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > (0x00002ab75fcfe000)
> > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > (0x00002ab75ff37000)
> > > > > > > libstdc++.so.6 =>
> > > > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > > > (0x00002ab760189000)
> > > > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > (0x00002ab7602cb000)
> > > > > > > libc.so.6 => /lib64/libc.so.6
(0x00002ab7602e0000)
> > > > > > > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > > > > > > libhdf5_hl.so.10 =>
> > > > > > > /software/depot/met-
8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > (0x00002ab760675000)
> > > > > > > libhdf5.so.10 =>
> > > > > > > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > > > > > > (0x00002ab760894000)
> > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > (0x00002ab760d6f000)
> > > > > > > [root at maury2 bin]#
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
> > > > > > > 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Thank you, Greg. Can you please tell me - were the
> > > > > > > libraries
> > > > > > > and
> > > > > > > the
> > > > > > > MET
> > > > > > > code built with the same version of the compiler. I'm
> > > > > > > checking
> > > > > > > to
> > > > > > > see if,
> > > > > > > for example, the libraries were built with gcc-6.3.0 but
> > > > > > > the
> > > > > > > MET
> > > > > > > code
> > > > > > > was
> > > > > > > build with gcc-4.4.7.
> > > > > > >
> > > > > > > It sounds like we need the libraries and the MET code to
be
> > > > > > > built
> > > > > > > with the
> > > > > > > same version of the compiler, in this case.
> > > > > > >
> > > > > > > Thanks for any information you can provide.
> > > > > > >
> > > > > > > Julie
> > > > > > >
> > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
> > > > > > > Contractor,
> > > > > > > Code
> > > > > > > 7501.1
> > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > <URL:
> > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >
> > > > > > > >
> > > > > > > > Find the logs attached.
> > > > > > > >
> > > > > > > > Greg
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > 8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Could you please run the following:
> > > > > > > >
> > > > > > > > which pb2nc
> > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > >
> > > > > > > > and send me the output?
> > > > > > > >
> > > > > > > > Please also send your config.log and make.log file.
> > > > > > > >
> > > > > > > > Thank you!
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
> > > > > > > > Contractor,
> > > > > > > > Code
> > > > > > > 7501.1
> > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > <URL:
> > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > > I used the buildscript. It should build all of the
> > > > > > > > > external
> > > > > > > > > libraries,
> > > > > > > so
> > > > > > > > > I believe everything was built with the same
compiler.
> > > > > > > > >
> > > > > > > > > Greg
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
> > > > > > > > > MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Hi Greg. Our developer suspects it may be a
mismatched
> > > > > > > compiler/library
> > > > > > > > > version. Was BUFRLIB installed with the same
compiler
> > > > > > > > > as
> > > > > > > > > MET?
> > > > > > > > > Also,
> > > > > > > > what
> > > > > > > > > version of BURRLIB are you using?
> > > > > > > > >
> > > > > > > > > Thanks,
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > wrote:
> > > > > > > > >
> > > > > > > > > > Hi Greg. I am checking in with another developer
> > > > > > > > > > regarding
> > > > > > > > > > the
> > > > > > > > > > error
> > > > > > > > you
> > > > > > > > > > experienced. Thank you for your patience.
> > > > > > > > > >
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr.
Gregory,
> > > > > > > > > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >
> > > > > > > > > >>
> > > > > > > > > >> <URL:
> > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >> >
> > > > > > > > > >>
> > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > >>
> > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > > > > > > >> This is free software; see the source for copying
> > > > > > > > > >> conditions.
> > > > > > > > > >> There
> > > > > > > > is
> > > > > > > > > NO
> > > > > > > > > >> warranty; not even for MERCHANTABILITY or FITNESS
> > > > > > > > > >> FOR
> > > > > > > > > >> A
> > > > > > > > > >> PARTICULAR
> > > > > > > > > >> PURPOSE.
> > > > > > > > > >>
> > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > >>
> > > > > > > > > >> Not all of the tests passed, please see
attachment.
> > > > > > > > > >>
> > > > > > > > > >> Greg
> > > > > > > > > >>
> > > > > > > > > >> -----Original Message-----
> > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > > >> MET
> > > > > > > > > >> 8.1
> > > > > > > > > >> Julie
> > > > > > > > > >> Prestopnik
> > > > > > > > > >>
> > > > > > > > > >> Thank you for letting me know. I will proceed
with
> > > > > > > > > >> trying
> > > > > > > > > >> to
> > > > > > > > reproduce
> > > > > > > > > >> the
> > > > > > > > > >> problem using the gcc-6.3.0. I will follow up
once
> > > > > > > > > >> I
> > > > > > > > > >> have
> > > > > > > > > >> more
> > > > > > > > > >> information.
> > > > > > > > > >>
> > > > > > > > > >> Julie
> > > > > > > > > >>
> > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr.
Gregory,
> > > > > > > > > >> Contractor,
> > > > > > > > > >> Code
> > > > > > > > > 7501.1
> > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >>
> > > > > > > > > >> >
> > > > > > > > > >> > <URL:
> > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >> > >
> > > > > > > > > >> >
> > > > > > > > > >> > When I compiled MET 8.0 the last time, it
worked.
> > > > > > > > > >> > I
> > > > > > > > > >> > was
> > > > > > > > > >> > also
> > > > > > > > > >> > able
> > > > > > > to
> > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > >> >
> > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > >> > Password:
> > > > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
> > > > > > > > > >> > 199.9.0.18
> > > > > > > > > >> >
> > > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > > > >> >
> > > > > > > > > >> > You are accessing a U.S. Government (USG)
> > > > > > > > > >> > Information
> > > > > > > > > >> > System
> > > > > > > > > >> > (IS)
> > > > > > > > that
> > > > > > > > > >> is
> > > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > > >> > By using this IS (which includes any device
> > > > > > > > > >> > attached
> > > > > > > > > >> > to
> > > > > > > > > >> > this
> > > > > > > > > >> > IS),
> > > > > > > > you
> > > > > > > > > >> > consent to the following conditions:
> > > > > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > > > > >> > communications
> > > > > > > > > >> > on
> > > > > > > > > >> > this
> > > > > > > IS
> > > > > > > > > for
> > > > > > > > > >> > purposes including, but not limited to,
> > > > > > > > > >> > penetration testing, COMSEC monitoring, network
> > > > > > > > > >> > operations
> > > > > > > > > >> > and
> > > > > > > > > defense,
> > > > > > > > > >> > personnel misconduct (PM), law enforcement
(LE),
> > > > > > > > > >> > and counterintelligence (CI) investigations.
> > > > > > > > > >> > -At any time, the USG may inspect and seize
data
> > > > > > > > > >> > stored
> > > > > > > > > >> > on
> > > > > > > > > >> > this
> > > > > > > IS.
> > > > > > > > > >> > -Communications using, or data stored on, this
IS
> > > > > > > > > >> > are
> > > > > > > > > >> > not
> > > > > > > > > >> > private,
> > > > > > > > are
> > > > > > > > > >> > subject to routine monitoring, interception,
> > > > > > > > > >> > and search, and may be disclosed or used for
any
> > > > > > > > > >> > USG-
> > > > > > > > > >> > authorized
> > > > > > > > > purpose.
> > > > > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > > > > >> > authentication
> > > > > > > > > >> > and
> > > > > > > access
> > > > > > > > > >> > controls) to protect USG interests -- not for
> > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > >> > -Notwithstanding the above, using this IS does
not
> > > > > > > > > >> > constitute
> > > > > > > > consent
> > > > > > > > > to
> > > > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > > > >> > monitoring of the content of privileged
> > > > > > > > > >> > communications,
> > > > > > > > > >> > or
> > > > > > > > > >> > work
> > > > > > > > > product,
> > > > > > > > > >> > related to personal representation or
> > > > > > > > > >> > services by attorneys, psychotherapists, or
> > > > > > > > > >> > clergy,
> > > > > > > > > >> > and
> > > > > > > > > >> > their
> > > > > > > > > >> assistants.
> > > > > > > > > >> > Such communications and work product are
> > > > > > > > > >> > private and confidential. See User Agreement
for
> > > > > > > > > >> > details.
> > > > > > > > > >> >
> > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > >> >
> > > > > > > > > >> > -----Original Message-----
> > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > >> > regarding
> > > > > > > > > >> > MET
> > > > > > > > > >> > 8.1
> > > > > > > Julie
> > > > > > > > > >> > Prestopnik
> > > > > > > > > >> >
> > > > > > > > > >> > Hi Gregory. I have not tested with version
6.3.0
> > > > > > > > > >> > of
> > > > > > > > > >> > the
> > > > > > > > > >> > gcc
> > > > > > > > compiler,
> > > > > > > > > >> but
> > > > > > > > > >> > rather only with lower versions (specifically
> > > > > > > > > >> > 4.8.5).
> > > > > > > > > >> > We
> > > > > > > > > >> > would,
> > > > > > > of
> > > > > > > > > >> course,
> > > > > > > > > >> > want our code to work with higher versions as
> > > > > > > > > >> > well.
> > > > > > > > > >> > I
> > > > > > > > > >> > have
> > > > > > > > > >> > not
> > > > > > > yet
> > > > > > > > > had
> > > > > > > > > >> an
> > > > > > > > > >> > opportunity to test with a higher version like
> > > > > > > > > >> > 6.3.0.
> > > > > > > > > >> > Do
> > > > > > > > > >> > you have
> > > > > > > > the
> > > > > > > > > >> > ability to compile MET using a lesser version
of
> > > > > > > > > >> > the
> > > > > > > > > >> > gcc
> > > > > > > > > >> > compiler
> > > > > > > to
> > > > > > > > > >> see if
> > > > > > > > > >> > that clears up the issues you are experiencing?
> > > > > > > > > >> >
> > > > > > > > > >> > Julie
> > > > > > > > > >> >
> > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr.
> > > > > > > > > >> > Gregory,
> > > > > > > > > >> > Contractor,
> > > > > > > Code
> > > > > > > > > >> 7501.1
> > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >> >
> > > > > > > > > >> > >
> > > > > > > > > >> > > <URL:
> > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >> > > >
> > > > > > > > > >> > >
> > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > >> > >
> > > > > > > > > >> > > Greg
> > > > > > > > > >> > >
> > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > >> > > regarding
> > > > > > > > > >> > > MET
> > > > > > > > > >> > > 8.1
> > > > > > > > Julie
> > > > > > > > > >> > > Prestopnik
> > > > > > > > > >> > >
> > > > > > > > > >> > > Hi Greg. Thank you for passing along your
> > > > > > > > > >> > > config.log
> > > > > > > > > >> > > file. I
> > > > > > > > see a
> > > > > > > > > >> > couple
> > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > >> > >
> > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > >> > >
> > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > >> > >
> > > > > > > > > >> > > Based on those errors, it looks like you may
not
> > > > > > > > > >> > > have
> > > > > > > > > >> > > flex
> > > > > > > > > >> > > and
> > > > > > > > bison
> > > > > > > > > >> > > installed. Please install those and try
running
> > > > > > > > > >> > > configure
> > > > > > > again.
> > > > > > > > > >> Please
> > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > >> > >
> > > > > > > > > >> > > Also, I just wanted to address one other
thing.
> > > > > > > > > >> > > In
> > > > > > > > > >> > > your
> > > > > > > original
> > > > > > > > > >> email
> > > > > > > > > >> > you
> > > > > > > > > >> > > listed the following as part of your "MET
> > > > > > > > > >> > > Configuration
> > > > > > > settings":
> > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread
-ldl
> > > > > > > > > >> > > -lutil
> > > > > > > > > >> > > -lm
> > > > > > > > -Xlinker
> > > > > > > > > >> > > -export-dynamic
> > > > > > > > > >> > >
> > > > > > > > > >> > > However, in your config.log file it looks
like
> > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > >> actually
> > > > > > > > > >> > > set to be "-L/software/depot/anaconda-
2.4.0/lib
> > > > > > > > > >> > > -lpython2.7
> > > > > > > > > -lpthread
> > > > > > > > > >> > -ldl
> > > > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which
is
> > > > > > > > > >> > > correct
> > > > > > > > > >> > > because
> > > > > > > you
> > > > > > > > > >> need
> > > > > > > > > >> > to
> > > > > > > > > >> > > have that -L part in there, so I just want to
> > > > > > > > > >> > > ensure
> > > > > > > > > >> > > that
> > > > > > > > > >> > > will
> > > > > > > > stay
> > > > > > > > > >> there
> > > > > > > > > >> > > when you run configure again.
> > > > > > > > > >> > >
> > > > > > > > > >> > > Thanks,
> > > > > > > > > >> > > Julie
> > > > > > > > > >> > >
> > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr.
> > > > > > > > > >> > > Gregory,
> > > > > > > > > >> > > Contractor,
> > > > > > > > Code
> > > > > > > > > >> > 7501.1
> > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >> > >
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > <URL:
> > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > > > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > >> > > >
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > >> > > > 7501.1
> > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > >> > > > regarding
> > > > > > > > > >> > > > MET
> > > > > > > > > >> > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > >> > > > Prestopnik
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > I'll go ahead and assign this ticket to
Julie,
> > > > > > > > > >> > > > and
> > > > > > > > > >> > > > she
> > > > > > > > > >> > > > should
> > > > > > > be
> > > > > > > > > >> > writing
> > > > > > > > > >> > > > you back in the next couple of days.
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > > > >> > > > "configure.log"
> > > > > > > > > >> > > > file you
> > > > > > > > > >> > generated
> > > > > > > > > >> > > as
> > > > > > > > > >> > > > well as the "config.log" file from that
same
> > > > > > > > > >> > > > directory.
> > > > > > > > > >> > > > So
> > > > > > > > please
> > > > > > > > > >> send
> > > > > > > > > >> > > > those along when you get a chance.
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > Thanks,
> > > > > > > > > >> > > > John
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr.
> > > > > > > > > >> > > > Gregory,
> > > > > > > > > >> > > > Contractor,
> > > > > > > > > Code
> > > > > > > > > >> > > 7501.1
> > > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > >
> > > > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091
was
> > > > > > > > > >> > > > > acted
> > > > > > > > > >> > > > > upon.
> > > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
> > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > >> > > > > Requestors:
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > >> > > > > Status: new
> > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > >
> > > > > > > > > >> > > > >
> > > > > > > > > >> > > > > Julie helped me compiled 8.0 using gcc
6.3.0
> > > > > > > > > >> > > > > and
> > > > > > > > > >> > > > > Anaconda
> > > > > > > > 2.4.0.
> > > > > > > > > >> The
> > > > > > > > > >> > > user
> > > > > > > > > >> > > > > asked for 8.1. I took notes last time,
but
> > > > > > > > > >> > > > > running
> > > > > > > > > >> > > > > into
> > > > > > > > > problems:
> > > > > > > > > >> > > > >
> > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > >> > > > > export MET_FONT_DIR=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > >> > > > > export
> > > > > > > > > >> > > > >
> > > > > > > > > >> >
> > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > >> > > > > export
> > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > >> > > > > export
> > > > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
> > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > >> > > > > prototypes
> > > > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > >> > > > > export
> > > > > > > > > >> > > > >
> > > > > > > > > >> > > >
> > > > > > > > > >> > >
> > > > > > > > > >> >
> > > > > > > > > >>
> > > > > > > > >
> > > > > > > >
> > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > 8.1/tar_files.tar
> > > > > > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > >> > > > > export
> > > > > > > > MET_FREETYPELIB=/software/depot/met-
8.1/external_libs/lib
> > > > > > > > > >> > > > > export
> > > > > > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7
-lpthread
> > > > > > > > > >> > > > > -ldl
> > > > > > > > > >> > > > > -lutil
> > > > > > > > > >> > > > > -lm
> > > > > > > > > >> -Xlinker
> > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > >> > > > > export MET_SUBDIR=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > >> > > > > 8.1
> > > > > > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > > > >> > > > > ./configure --prefix=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > >> > > > > 8.1
> > > > > > > > > >> --enable-grib2
> > > > > > > > > >> > > > > --enable-modis --enable-mode_graphics
> > > > > > > > > >> > > > > --enable-
> > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > >> > > configure.log
> > > > > > > > > >> > > > > 2> &1
> > > > > > > > > >> > > > > configure returned with non-zero (127)
> > > > > > > > > >> > > > > status
> > > > > > > > > >> > > > >
> > > > > > > > > >> > > > >
> > > > > > > > > >> > > >
> > > > > > > > > >> > > >
> > > > > > > > > >> > > >
> > > > > > > > > >> > >
> > > > > > > > > >> > >
> > > > > > > > > >> > >
> > > > > > > > > >> > >
> > > > > > > > > >> >
> > > > > > > > > >> >
> > > > > > > > > >> >
> > > > > > > > > >> >
> > > > > > > > > >>
> > > > > > > > > >>
> > > > > > > > > >>
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Tue May 21 18:57:59 2019
OK, we have several people who are using the 8.1 version I built. We
use a central location:
/software/depot
To house all of our software. To be clear, the first build went OK, it
was 'make test' that failed. So the users are using that, but someone
ran into an error today and they asked me about NetCDF. I think it was
their setup. The same build was used on two different machines, one
had an error, one didn't.
Greg
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Tuesday, May 21, 2019 5:50 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
No, external libraries are not changed.
Personally, I'm using newer NetCDF library (4.6.x instead of 4.4.1.1).
Cheers,
Howard
On Tue May 21 18:39:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> No, that is not what I am asking. Every time I build, I use your
> script which builds everything.
>
> What I am asking is, did the versions of the external libraries
> change?
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Tuesday, May 21, 2019 5:34 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Yes, the third party libraries should be compiled with newer
version.
>
> The compile error with gnu 7.3.0 happens with gnu 6.3.0, too.
> The fix/patch is not ready officially. One file has to be corrected
> to support newer version gnu compiler. Would you replace
data_line.cc
> with attached file or modify it manually?
>
> Filename:
> met-8.1/src/basic/vx_util/data_line.cc
>
> line 202:
>
> out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> out << prefix << sstream.str() << Line.substr(j) << "\"\n";
>
> line 218:
>
> out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> out << prefix << sstream.str() << Line.substr(j) << "\"\n";
>
> Cheers,
> Howard
>
> On Tue May 21 18:21:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > Did new external libraries need to be built with 8.1?
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, May 16, 2019 4:01 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > No new tools but many enhancements.
> >
> > It's available at
> > https://dtcenter.org/community-code/model-evaluation-tools-
met/met-
> > version-8-1
> >
> > Cheers,
> > Howard
> >
> > On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > Maybe you can answer one question while I try to reinstall
> > > everything. What features does 8.1 provide over 8.0?
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, May 16, 2019 2:46 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > Would try this command at /software/depot/met-8.1/met-
8.1/scripts
> > > directory?
> > >
> > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > echo $LD_LIBRARY_PATH
> > >
> > > 2. Save LD_LIBRARY_PATH
> > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > OR
> > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > >
> > > 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-
2.4.0/lib
> > >
> > > 4. Check which libgfortran.so at /software/depot/met-8.1/met-
> > > 8.1/scripts directory.
> > >
> > > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran OR ldd
> > > ../bin/pb2nc | grep libgfortran
> > >
> > > 5. Check libgfortran version (should be libgfortran.so.3, not
so.4)
> > >
> > > 6. Run the failed command manually at /software/depot/met-
8.1/met-
> > > 8.1/scripts directory if libgfortran.so.3.
> > >
> > > ../src/tools/other/pb2nc/pb2nc \
> > >
> > > ../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > \
> > > ../out/pb2nc/sample_pb.nc \
> > > config/PB2NCConfig_G212 \
> > > -v 2
> > >
> > > 7. Change back LD_LIBRARY_PATH
> > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > OR
> > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > >
> > > Cheers,
> > > Howard
> > >
> > >
> > > On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-grib2-
> > > > support
> > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > libpthread.so.0 => /lib64/libpthread.so.0
(0x0000003453800000)
> > > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > > > libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> > > > libpng16.so.16 => /software/depot/met-
> > > > 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> > > > libz.so.1 => /software/depot/met-
> > > > 8.1/external_libs/lib/libz.so.1
> > > > (0x00007f7f19af4000)
> > > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1 (0x00007f7f198a6000)
> > > > libnetcdf.so.11 => /software/depot/met-
> > > > 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> > > > libgsl.so.19 => /software/depot/met-
> > > > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > > > libgslcblas.so.0 => /software/depot/met-
> > > > 8.1/external_libs/lib/libgslcblas.so.0 (0x00007f7f18eeb000)
> > > > libjpeg.so.9 => /software/depot/anaconda-
2.4.0/lib/libjpeg.so.9
> > > > (0x00007f7f18c99000)
> > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > 2.4.0/lib/libstdc++.so.6
> > > > (0x00007f7f18b58000)
> > > > libgcc_s.so.1 =>
> > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > (0x00007f7f18b42000)
> > > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > 8.1/external_libs/lib/libhdf5_hl.so.10 (0x00007f7f18922000)
> > > > libhdf5.so.10 => /software/depot/met-
> > > > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > > > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > > > [ramos at lorenz bin]$
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > Prestopnik
> > > >
> > > > MET is expecting "libpython2.7.so" to enable python support.
> > > >
> > > > A log message shows the python was not enabled. Is python
> > > > supporting is critical?
> > > >
> > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > > --enable-lidar2nc > configure.log 2>&1
> > > >
> > > > If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> > > > 1. Make sure python is not enabled
> > > > no "--enable-python" option for ./configure
> > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
> > > > LD_LIBRARY_PATH at the build time and runtime both.
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > > On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > I was able to compile Met 8.0 on our Cray with:
> > > > >
> > > > > ramos at leo1:~> gcc --version
> > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright (C) 2017
Free
> > > > > Software Foundation, Inc.
> > > > > This is free software; see the source for copying
conditions.
> > > > > There
> > > > > is NO
> > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > PARTICULAR PURPOSE.
> > > > >
> > > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC) 7.3.0
> > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free Software
> > > > > Foundation, Inc.
> > > > > This is free software; see the source for copying
conditions.
> > > > > There
> > > > > is NO
> > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > PARTICULAR PURPOSE.
> > > > >
> > > > > ramos at leo1:~>
> > > > >
> > > > > We don't have that version on our Red Hat systems. Met 8.0
> > > > > worked on RH, but 8.1 failed on the 'make test'. The user
says
> > > > > she is fine with the executables so far. I will have to
build a
> > > > > gfortran 7.x version.
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > Hello,
> > > > >
> > > > > Is gcc/gfortran 7.x compiler available?
> > > > >
> > > > > The problem was caused by the path for python library
> > > > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4
exists
> > > > > there
> > > > > from the ldd output. It was used on building MET. MET was
> > > > > compiled
> > > > > with gcc 4.4.7 which supports only libgfortran.so.3, and
linked
> > > > > with
> > > > > libgfortran.so.4 because of MET_PYTHON_LD configuration.
Some
> > > > > libraries do not support the backward compatibility.
> > > > > libgfortran.so
> > > > > is
> > > > > one of them. In this case, the compiler version and library
> > > > > version
> > > > > should match.
> > > > >
> > > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
8.1/bin/pb2nc
> > > > > |grep
> > > > > gfortran
> > > > > libgfortran.so.4 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > >
> > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\
-export-
> > > > > dynamic
> > > > >
> > > > > The solution is compiling third party libraries and MET with
> > > > > version
> > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > > > libgfortran.so.5,
> > > > > So the same problem will happen if MET is built with
> > > > > gcc/gfortran
> > > > > 6.x
> > > > > or gcc/gfortran 8.x.
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > > On Mon May 13 18:36:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > Attached is the config.log for NetCDf it shows
/usr/bin/gcc
> > > > > >
> > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat
version.
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Thank you. Unfortunately, that does not tell me if the
> > > > > > libraries
> > > > > > and
> > > > > > the
> > > > > > MET code were built with the same version of the compiler.
I
> > > > > > also
> > > > > > do
> > > > > > not
> > > > > > see bufrlib in that list.
> > > > > >
> > > > > > Can you please tell me - were the libraries and the MET
code
> > > > > > built
> > > > > > with the
> > > > > > same version of the compiler? I'm checking to see if, for
> > > > > > example,
> > > > > > the
> > > > > > libraries were built with gcc-6.3.0 but the MET code was
> > > > > > build
> > > > > > with
> > > > > > gcc-4.4.7.
> > > > > >
> > > > > > Thanks!
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
> > > > > > Contractor,
> > > > > > Code
> > > > > > 7501.1
> > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
> > > > > > > https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >
> > > > > > >
> > > > > > > You can see I am using those libraries for MET 8.1:
> > > > > > >
> > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > > > libpython2.7.so.1.0 =>
> > > > > > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > > > > > (0x00002ab75e1f3000)
> > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > (0x00002ab75e63b000)
> > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > (0x00002ab75e858000)
> > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > (0x00002ab75ea5c000)
> > > > > > > libpng16.so.16 =>
> > > > > > > /software/depot/met-8.1/external_libs/lib/libpng16.so.16
> > > > > > > (0x00002ab75ec60000)
> > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > (0x00002ab75ee92000)
> > > > > > > libm.so.6 => /lib64/libm.so.6
(0x00002ab75f0aa000)
> > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > (0x00002ab75f32f000)
> > > > > > > libnetcdf.so.11 =>
> > > > > > > /software/depot/met-
8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > (0x00002ab75f57c000)
> > > > > > > libgsl.so.19 =>
> > > > > > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > > > > > (0x00002ab75f8bb000)
> > > > > > > libgslcblas.so.0 =>
> > > > > > > /software/depot/met-
8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > (0x00002ab75fcfe000)
> > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > (0x00002ab75ff37000)
> > > > > > > libstdc++.so.6 =>
> > > > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > > > (0x00002ab760189000)
> > > > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > (0x00002ab7602cb000)
> > > > > > > libc.so.6 => /lib64/libc.so.6
(0x00002ab7602e0000)
> > > > > > > /lib64/ld-linux-x86-64.so.2 (0x0000559353f4f000)
> > > > > > > libhdf5_hl.so.10 =>
> > > > > > > /software/depot/met-
8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > (0x00002ab760675000)
> > > > > > > libhdf5.so.10 =>
> > > > > > > /software/depot/met-8.1/external_libs/lib/libhdf5.so.10
> > > > > > > (0x00002ab760894000)
> > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > (0x00002ab760d6f000)
> > > > > > > [root at maury2 bin]#
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
> > > > > > > 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Thank you, Greg. Can you please tell me - were the
> > > > > > > libraries
> > > > > > > and
> > > > > > > the
> > > > > > > MET
> > > > > > > code built with the same version of the compiler. I'm
> > > > > > > checking
> > > > > > > to
> > > > > > > see if,
> > > > > > > for example, the libraries were built with gcc-6.3.0 but
> > > > > > > the
> > > > > > > MET
> > > > > > > code
> > > > > > > was
> > > > > > > build with gcc-4.4.7.
> > > > > > >
> > > > > > > It sounds like we need the libraries and the MET code to
be
> > > > > > > built
> > > > > > > with the
> > > > > > > same version of the compiler, in this case.
> > > > > > >
> > > > > > > Thanks for any information you can provide.
> > > > > > >
> > > > > > > Julie
> > > > > > >
> > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
> > > > > > > Contractor,
> > > > > > > Code
> > > > > > > 7501.1
> > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > <URL:
> > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >
> > > > > > > >
> > > > > > > > Find the logs attached.
> > > > > > > >
> > > > > > > > Greg
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > 8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Could you please run the following:
> > > > > > > >
> > > > > > > > which pb2nc
> > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > >
> > > > > > > > and send me the output?
> > > > > > > >
> > > > > > > > Please also send your config.log and make.log file.
> > > > > > > >
> > > > > > > > Thank you!
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
> > > > > > > > Contractor,
> > > > > > > > Code
> > > > > > > 7501.1
> > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > <URL:
> > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > > I used the buildscript. It should build all of the
> > > > > > > > > external
> > > > > > > > > libraries,
> > > > > > > so
> > > > > > > > > I believe everything was built with the same
compiler.
> > > > > > > > >
> > > > > > > > > Greg
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
> > > > > > > > > MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Hi Greg. Our developer suspects it may be a
mismatched
> > > > > > > compiler/library
> > > > > > > > > version. Was BUFRLIB installed with the same
compiler
> > > > > > > > > as
> > > > > > > > > MET?
> > > > > > > > > Also,
> > > > > > > > what
> > > > > > > > > version of BURRLIB are you using?
> > > > > > > > >
> > > > > > > > > Thanks,
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > wrote:
> > > > > > > > >
> > > > > > > > > > Hi Greg. I am checking in with another developer
> > > > > > > > > > regarding
> > > > > > > > > > the
> > > > > > > > > > error
> > > > > > > > you
> > > > > > > > > > experienced. Thank you for your patience.
> > > > > > > > > >
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr.
Gregory,
> > > > > > > > > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >
> > > > > > > > > >>
> > > > > > > > > >> <URL:
> > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >> >
> > > > > > > > > >>
> > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > >>
> > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > > > >> Copyright (C) 2010 Free Software Foundation, Inc.
> > > > > > > > > >> This is free software; see the source for copying
> > > > > > > > > >> conditions.
> > > > > > > > > >> There
> > > > > > > > is
> > > > > > > > > NO
> > > > > > > > > >> warranty; not even for MERCHANTABILITY or FITNESS
> > > > > > > > > >> FOR
> > > > > > > > > >> A
> > > > > > > > > >> PARTICULAR
> > > > > > > > > >> PURPOSE.
> > > > > > > > > >>
> > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > >>
> > > > > > > > > >> Not all of the tests passed, please see
attachment.
> > > > > > > > > >>
> > > > > > > > > >> Greg
> > > > > > > > > >>
> > > > > > > > > >> -----Original Message-----
> > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > > >> MET
> > > > > > > > > >> 8.1
> > > > > > > > > >> Julie
> > > > > > > > > >> Prestopnik
> > > > > > > > > >>
> > > > > > > > > >> Thank you for letting me know. I will proceed
with
> > > > > > > > > >> trying
> > > > > > > > > >> to
> > > > > > > > reproduce
> > > > > > > > > >> the
> > > > > > > > > >> problem using the gcc-6.3.0. I will follow up
once
> > > > > > > > > >> I
> > > > > > > > > >> have
> > > > > > > > > >> more
> > > > > > > > > >> information.
> > > > > > > > > >>
> > > > > > > > > >> Julie
> > > > > > > > > >>
> > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr.
Gregory,
> > > > > > > > > >> Contractor,
> > > > > > > > > >> Code
> > > > > > > > > 7501.1
> > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >>
> > > > > > > > > >> >
> > > > > > > > > >> > <URL:
> > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >> > >
> > > > > > > > > >> >
> > > > > > > > > >> > When I compiled MET 8.0 the last time, it
worked.
> > > > > > > > > >> > I
> > > > > > > > > >> > was
> > > > > > > > > >> > also
> > > > > > > > > >> > able
> > > > > > > to
> > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > >> >
> > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > >> > Password:
> > > > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
> > > > > > > > > >> > 199.9.0.18
> > > > > > > > > >> >
> > > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > > > >> >
> > > > > > > > > >> > You are accessing a U.S. Government (USG)
> > > > > > > > > >> > Information
> > > > > > > > > >> > System
> > > > > > > > > >> > (IS)
> > > > > > > > that
> > > > > > > > > >> is
> > > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > > >> > By using this IS (which includes any device
> > > > > > > > > >> > attached
> > > > > > > > > >> > to
> > > > > > > > > >> > this
> > > > > > > > > >> > IS),
> > > > > > > > you
> > > > > > > > > >> > consent to the following conditions:
> > > > > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > > > > >> > communications
> > > > > > > > > >> > on
> > > > > > > > > >> > this
> > > > > > > IS
> > > > > > > > > for
> > > > > > > > > >> > purposes including, but not limited to,
> > > > > > > > > >> > penetration testing, COMSEC monitoring, network
> > > > > > > > > >> > operations
> > > > > > > > > >> > and
> > > > > > > > > defense,
> > > > > > > > > >> > personnel misconduct (PM), law enforcement
(LE),
> > > > > > > > > >> > and counterintelligence (CI) investigations.
> > > > > > > > > >> > -At any time, the USG may inspect and seize
data
> > > > > > > > > >> > stored
> > > > > > > > > >> > on
> > > > > > > > > >> > this
> > > > > > > IS.
> > > > > > > > > >> > -Communications using, or data stored on, this
IS
> > > > > > > > > >> > are
> > > > > > > > > >> > not
> > > > > > > > > >> > private,
> > > > > > > > are
> > > > > > > > > >> > subject to routine monitoring, interception,
> > > > > > > > > >> > and search, and may be disclosed or used for
any
> > > > > > > > > >> > USG-
> > > > > > > > > >> > authorized
> > > > > > > > > purpose.
> > > > > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > > > > >> > authentication
> > > > > > > > > >> > and
> > > > > > > access
> > > > > > > > > >> > controls) to protect USG interests -- not for
> > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > >> > -Notwithstanding the above, using this IS does
not
> > > > > > > > > >> > constitute
> > > > > > > > consent
> > > > > > > > > to
> > > > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > > > >> > monitoring of the content of privileged
> > > > > > > > > >> > communications,
> > > > > > > > > >> > or
> > > > > > > > > >> > work
> > > > > > > > > product,
> > > > > > > > > >> > related to personal representation or
> > > > > > > > > >> > services by attorneys, psychotherapists, or
> > > > > > > > > >> > clergy,
> > > > > > > > > >> > and
> > > > > > > > > >> > their
> > > > > > > > > >> assistants.
> > > > > > > > > >> > Such communications and work product are
> > > > > > > > > >> > private and confidential. See User Agreement
for
> > > > > > > > > >> > details.
> > > > > > > > > >> >
> > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > >> >
> > > > > > > > > >> > -----Original Message-----
> > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > >> > regarding
> > > > > > > > > >> > MET
> > > > > > > > > >> > 8.1
> > > > > > > Julie
> > > > > > > > > >> > Prestopnik
> > > > > > > > > >> >
> > > > > > > > > >> > Hi Gregory. I have not tested with version
6.3.0
> > > > > > > > > >> > of
> > > > > > > > > >> > the
> > > > > > > > > >> > gcc
> > > > > > > > compiler,
> > > > > > > > > >> but
> > > > > > > > > >> > rather only with lower versions (specifically
> > > > > > > > > >> > 4.8.5).
> > > > > > > > > >> > We
> > > > > > > > > >> > would,
> > > > > > > of
> > > > > > > > > >> course,
> > > > > > > > > >> > want our code to work with higher versions as
> > > > > > > > > >> > well.
> > > > > > > > > >> > I
> > > > > > > > > >> > have
> > > > > > > > > >> > not
> > > > > > > yet
> > > > > > > > > had
> > > > > > > > > >> an
> > > > > > > > > >> > opportunity to test with a higher version like
> > > > > > > > > >> > 6.3.0.
> > > > > > > > > >> > Do
> > > > > > > > > >> > you have
> > > > > > > > the
> > > > > > > > > >> > ability to compile MET using a lesser version
of
> > > > > > > > > >> > the
> > > > > > > > > >> > gcc
> > > > > > > > > >> > compiler
> > > > > > > to
> > > > > > > > > >> see if
> > > > > > > > > >> > that clears up the issues you are experiencing?
> > > > > > > > > >> >
> > > > > > > > > >> > Julie
> > > > > > > > > >> >
> > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr.
> > > > > > > > > >> > Gregory,
> > > > > > > > > >> > Contractor,
> > > > > > > Code
> > > > > > > > > >> 7501.1
> > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >> >
> > > > > > > > > >> > >
> > > > > > > > > >> > > <URL:
> > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >> > > >
> > > > > > > > > >> > >
> > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > >> > >
> > > > > > > > > >> > > Greg
> > > > > > > > > >> > >
> > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > >> > > regarding
> > > > > > > > > >> > > MET
> > > > > > > > > >> > > 8.1
> > > > > > > > Julie
> > > > > > > > > >> > > Prestopnik
> > > > > > > > > >> > >
> > > > > > > > > >> > > Hi Greg. Thank you for passing along your
> > > > > > > > > >> > > config.log
> > > > > > > > > >> > > file. I
> > > > > > > > see a
> > > > > > > > > >> > couple
> > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > >> > >
> > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > >> > >
> > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > >> > >
> > > > > > > > > >> > > Based on those errors, it looks like you may
not
> > > > > > > > > >> > > have
> > > > > > > > > >> > > flex
> > > > > > > > > >> > > and
> > > > > > > > bison
> > > > > > > > > >> > > installed. Please install those and try
running
> > > > > > > > > >> > > configure
> > > > > > > again.
> > > > > > > > > >> Please
> > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > >> > >
> > > > > > > > > >> > > Also, I just wanted to address one other
thing.
> > > > > > > > > >> > > In
> > > > > > > > > >> > > your
> > > > > > > original
> > > > > > > > > >> email
> > > > > > > > > >> > you
> > > > > > > > > >> > > listed the following as part of your "MET
> > > > > > > > > >> > > Configuration
> > > > > > > settings":
> > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread
-ldl
> > > > > > > > > >> > > -lutil
> > > > > > > > > >> > > -lm
> > > > > > > > -Xlinker
> > > > > > > > > >> > > -export-dynamic
> > > > > > > > > >> > >
> > > > > > > > > >> > > However, in your config.log file it looks
like
> > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > >> actually
> > > > > > > > > >> > > set to be "-L/software/depot/anaconda-
2.4.0/lib
> > > > > > > > > >> > > -lpython2.7
> > > > > > > > > -lpthread
> > > > > > > > > >> > -ldl
> > > > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which
is
> > > > > > > > > >> > > correct
> > > > > > > > > >> > > because
> > > > > > > you
> > > > > > > > > >> need
> > > > > > > > > >> > to
> > > > > > > > > >> > > have that -L part in there, so I just want to
> > > > > > > > > >> > > ensure
> > > > > > > > > >> > > that
> > > > > > > > > >> > > will
> > > > > > > > stay
> > > > > > > > > >> there
> > > > > > > > > >> > > when you run configure again.
> > > > > > > > > >> > >
> > > > > > > > > >> > > Thanks,
> > > > > > > > > >> > > Julie
> > > > > > > > > >> > >
> > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr.
> > > > > > > > > >> > > Gregory,
> > > > > > > > > >> > > Contractor,
> > > > > > > > Code
> > > > > > > > > >> > 7501.1
> > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >> > >
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > <URL:
> > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > >
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > [ramos at predict met-8.1]$ more configure.log
> > > > > > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > >> > > >
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > >> > > > 7501.1
> > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > >> > > > regarding
> > > > > > > > > >> > > > MET
> > > > > > > > > >> > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > >> > > > Prestopnik
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > I'll go ahead and assign this ticket to
Julie,
> > > > > > > > > >> > > > and
> > > > > > > > > >> > > > she
> > > > > > > > > >> > > > should
> > > > > > > be
> > > > > > > > > >> > writing
> > > > > > > > > >> > > > you back in the next couple of days.
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > > > >> > > > "configure.log"
> > > > > > > > > >> > > > file you
> > > > > > > > > >> > generated
> > > > > > > > > >> > > as
> > > > > > > > > >> > > > well as the "config.log" file from that
same
> > > > > > > > > >> > > > directory.
> > > > > > > > > >> > > > So
> > > > > > > > please
> > > > > > > > > >> send
> > > > > > > > > >> > > > those along when you get a chance.
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > Thanks,
> > > > > > > > > >> > > > John
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr.
> > > > > > > > > >> > > > Gregory,
> > > > > > > > > >> > > > Contractor,
> > > > > > > > > Code
> > > > > > > > > >> > > 7501.1
> > > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > >
> > > > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091
was
> > > > > > > > > >> > > > > acted
> > > > > > > > > >> > > > > upon.
> > > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
> > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > >> > > > > Requestors:
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > >> > > > > Status: new
> > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >> > > >
> > > > > > > > > >> > > > >
> > > > > > > > > >> > > > >
> > > > > > > > > >> > > > > Julie helped me compiled 8.0 using gcc
6.3.0
> > > > > > > > > >> > > > > and
> > > > > > > > > >> > > > > Anaconda
> > > > > > > > 2.4.0.
> > > > > > > > > >> The
> > > > > > > > > >> > > user
> > > > > > > > > >> > > > > asked for 8.1. I took notes last time,
but
> > > > > > > > > >> > > > > running
> > > > > > > > > >> > > > > into
> > > > > > > > > problems:
> > > > > > > > > >> > > > >
> > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > >> > > > > export MET_FONT_DIR=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > >> > > > > export
> > > > > > > > > >> > > > >
> > > > > > > > > >> >
> > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > >> > > > > export
> > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > >> > > > > export
> > > > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3 -Wall
> > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > >> > > > > prototypes
> > > > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > >> > > > > export
> > > > > > > > > >> > > > >
> > > > > > > > > >> > > >
> > > > > > > > > >> > >
> > > > > > > > > >> >
> > > > > > > > > >>
> > > > > > > > >
> > > > > > > >
> > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > 8.1/tar_files.tar
> > > > > > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > >> > > > > export
> > > > > > > > MET_FREETYPELIB=/software/depot/met-
8.1/external_libs/lib
> > > > > > > > > >> > > > > export
> > > > > > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7
-lpthread
> > > > > > > > > >> > > > > -ldl
> > > > > > > > > >> > > > > -lutil
> > > > > > > > > >> > > > > -lm
> > > > > > > > > >> -Xlinker
> > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > >> > > > > export MET_SUBDIR=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > >> > > > > 8.1
> > > > > > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > > > >> > > > > ./configure --prefix=/software/depot/met-
> > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > >> > > > > 8.1
> > > > > > > > > >> --enable-grib2
> > > > > > > > > >> > > > > --enable-modis --enable-mode_graphics
> > > > > > > > > >> > > > > --enable-
> > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > >> > > configure.log
> > > > > > > > > >> > > > > 2> &1
> > > > > > > > > >> > > > > configure returned with non-zero (127)
> > > > > > > > > >> > > > > status
> > > > > > > > > >> > > > >
> > > > > > > > > >> > > > >
> > > > > > > > > >> > > >
> > > > > > > > > >> > > >
> > > > > > > > > >> > > >
> > > > > > > > > >> > >
> > > > > > > > > >> > >
> > > > > > > > > >> > >
> > > > > > > > > >> > >
> > > > > > > > > >> >
> > > > > > > > > >> >
> > > > > > > > > >> >
> > > > > > > > > >> >
> > > > > > > > > >>
> > > > > > > > > >>
> > > > > > > > > >>
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Howard Soh
Time: Wed May 22 08:11:29 2019
The runntime NetCDF library is decided by LD_LIBRARY_PATH.
LD_LIBRARY_PATH can be changed by module loading or by user
configurations. If the problem happens with NetCDF, would you ask them
to run this command and check which NetCDF library is loaded?
ldd bin/<MET_tool_name> | grep netcdf
ldd bin/<MET_tool_name> | grep hdf
for example,
ldd bin/pb2nc | grep netcdf
ldd bin/pb2nc | grep hdf
ldd bin/grid_stat | grep netcdf
ldd bin/grid_stat | grep hdf
Note: There are dependency between NetCDF4 and HDF5.
Cheers,
Howard
On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> OK, we have several people who are using the 8.1 version I built. We
> use a central location:
>
> /software/depot
>
> To house all of our software. To be clear, the first build went OK,
it
> was 'make test' that failed. So the users are using that, but
someone
> ran into an error today and they asked me about NetCDF. I think it
was
> their setup. The same build was used on two different machines, one
> had an error, one didn't.
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Tuesday, May 21, 2019 5:50 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> No, external libraries are not changed.
>
> Personally, I'm using newer NetCDF library (4.6.x instead of
4.4.1.1).
>
> Cheers,
> Howard
>
> On Tue May 21 18:39:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > No, that is not what I am asking. Every time I build, I use your
> > script which builds everything.
> >
> > What I am asking is, did the versions of the external libraries
> > change?
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Tuesday, May 21, 2019 5:34 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Yes, the third party libraries should be compiled with newer
version.
> >
> > The compile error with gnu 7.3.0 happens with gnu 6.3.0, too.
> > The fix/patch is not ready officially. One file has to be
corrected
> > to support newer version gnu compiler. Would you replace
data_line.cc
> > with attached file or modify it manually?
> >
> > Filename:
> > met-8.1/src/basic/vx_util/data_line.cc
> >
> > line 202:
> >
> > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> >
> > line 218:
> >
> > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> >
> > Cheers,
> > Howard
> >
> > On Tue May 21 18:21:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > Did new external libraries need to be built with 8.1?
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, May 16, 2019 4:01 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > No new tools but many enhancements.
> > >
> > > It's available at
> > > https://dtcenter.org/community-code/model-evaluation-tools-
met/met-
> > > version-8-1
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Maybe you can answer one question while I try to reinstall
> > > > everything. What features does 8.1 provide over 8.0?
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > Prestopnik
> > > >
> > > > Would try this command at /software/depot/met-8.1/met-
8.1/scripts
> > > > directory?
> > > >
> > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > echo $LD_LIBRARY_PATH
> > > >
> > > > 2. Save LD_LIBRARY_PATH
> > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > OR
> > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > >
> > > > 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-
2.4.0/lib
> > > >
> > > > 4. Check which libgfortran.so at /software/depot/met-8.1/met-
> > > > 8.1/scripts directory.
> > > >
> > > > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran OR ldd
> > > > ../bin/pb2nc | grep libgfortran
> > > >
> > > > 5. Check libgfortran version (should be libgfortran.so.3, not
> > > > so.4)
> > > >
> > > > 6. Run the failed command manually at /software/depot/met-
> > > > 8.1/met-
> > > > 8.1/scripts directory if libgfortran.so.3.
> > > >
> > > > ../src/tools/other/pb2nc/pb2nc \
> > > >
> > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > \
> > > > ../out/pb2nc/sample_pb.nc \
> > > > config/PB2NCConfig_G212 \
> > > > -v 2
> > > >
> > > > 7. Change back LD_LIBRARY_PATH
> > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > OR
> > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > >
> > > > On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-grib2-
> > > > > support
> > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > (0x0000003453800000)
> > > > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > > > > libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> > > > > libpng16.so.16 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> > > > > libz.so.1 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libz.so.1
> > > > > (0x00007f7f19af4000)
> > > > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
(0x00007f7f198a6000)
> > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> > > > > libgsl.so.19 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libgslcblas.so.0 (0x00007f7f18eeb000)
> > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libjpeg.so.9
> > > > > (0x00007f7f18c99000)
> > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libstdc++.so.6
> > > > > (0x00007f7f18b58000)
> > > > > libgcc_s.so.1 =>
> > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > (0x00007f7f18b42000)
> > > > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libhdf5_hl.so.10 (0x00007f7f18922000)
> > > > > libhdf5.so.10 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > > > > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > > > > [ramos at lorenz bin]$
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > MET is expecting "libpython2.7.so" to enable python support.
> > > > >
> > > > > A log message shows the python was not enabled. Is python
> > > > > supporting is critical?
> > > > >
> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > > > --enable-lidar2nc > configure.log 2>&1
> > > > >
> > > > > If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> > > > > 1. Make sure python is not enabled
> > > > > no "--enable-python" option for ./configure
> > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
> > > > > LD_LIBRARY_PATH at the build time and runtime both.
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > > On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > >
> > > > > > ramos at leo1:~> gcc --version
> > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright (C) 2017
Free
> > > > > > Software Foundation, Inc.
> > > > > > This is free software; see the source for copying
conditions.
> > > > > > There
> > > > > > is NO
> > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > PARTICULAR PURPOSE.
> > > > > >
> > > > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC) 7.3.0
> > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free Software
> > > > > > Foundation, Inc.
> > > > > > This is free software; see the source for copying
conditions.
> > > > > > There
> > > > > > is NO
> > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > PARTICULAR PURPOSE.
> > > > > >
> > > > > > ramos at leo1:~>
> > > > > >
> > > > > > We don't have that version on our Red Hat systems. Met 8.0
> > > > > > worked on RH, but 8.1 failed on the 'make test'. The user
> > > > > > says
> > > > > > she is fine with the executables so far. I will have to
build
> > > > > > a
> > > > > > gfortran 7.x version.
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Hello,
> > > > > >
> > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > >
> > > > > > The problem was caused by the path for python library
> > > > > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4
exists
> > > > > > there
> > > > > > from the ldd output. It was used on building MET. MET was
> > > > > > compiled
> > > > > > with gcc 4.4.7 which supports only libgfortran.so.3, and
> > > > > > linked
> > > > > > with
> > > > > > libgfortran.so.4 because of MET_PYTHON_LD configuration.
Some
> > > > > > libraries do not support the backward compatibility.
> > > > > > libgfortran.so
> > > > > > is
> > > > > > one of them. In this case, the compiler version and
library
> > > > > > version
> > > > > > should match.
> > > > > >
> > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
> > > > > > 8.1/bin/pb2nc
> > > > > > |grep
> > > > > > gfortran
> > > > > > libgfortran.so.4 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > >
> > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\
-export-
> > > > > > dynamic
> > > > > >
> > > > > > The solution is compiling third party libraries and MET
with
> > > > > > version
> > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > > > > libgfortran.so.5,
> > > > > > So the same problem will happen if MET is built with
> > > > > > gcc/gfortran
> > > > > > 6.x
> > > > > > or gcc/gfortran 8.x.
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > > On Mon May 13 18:36:04 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > Attached is the config.log for NetCDf it shows
/usr/bin/gcc
> > > > > > >
> > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat
> > > > > > > version.
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
> > > > > > > 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Thank you. Unfortunately, that does not tell me if the
> > > > > > > libraries
> > > > > > > and
> > > > > > > the
> > > > > > > MET code were built with the same version of the
compiler.
> > > > > > > I
> > > > > > > also
> > > > > > > do
> > > > > > > not
> > > > > > > see bufrlib in that list.
> > > > > > >
> > > > > > > Can you please tell me - were the libraries and the MET
> > > > > > > code
> > > > > > > built
> > > > > > > with the
> > > > > > > same version of the compiler? I'm checking to see if,
for
> > > > > > > example,
> > > > > > > the
> > > > > > > libraries were built with gcc-6.3.0 but the MET code was
> > > > > > > build
> > > > > > > with
> > > > > > > gcc-4.4.7.
> > > > > > >
> > > > > > > Thanks!
> > > > > > >
> > > > > > > Julie
> > > > > > >
> > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
> > > > > > > Contractor,
> > > > > > > Code
> > > > > > > 7501.1
> > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > <URL:
> > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >
> > > > > > > >
> > > > > > > > You can see I am using those libraries for MET 8.1:
> > > > > > > >
> > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > (0x00002ab75e63b000)
> > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > (0x00002ab75e858000)
> > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > libpng16.so.16 =>
> > > > > > > > /software/depot/met-
8.1/external_libs/lib/libpng16.so.16
> > > > > > > > (0x00002ab75ec60000)
> > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > (0x00002ab75ee92000)
> > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > (0x00002ab75f32f000)
> > > > > > > > libnetcdf.so.11 =>
> > > > > > > > /software/depot/met-
8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > (0x00002ab75f57c000)
> > > > > > > > libgsl.so.19 =>
> > > > > > > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > libgslcblas.so.0 =>
> > > > > > > > /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > (0x00002ab75ff37000)
> > > > > > > > libstdc++.so.6 =>
> > > > > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > > > > (0x00002ab760189000)
> > > > > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > (0x00002ab7602cb000)
> > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > (0x00002ab7602e0000)
> > > > > > > > /lib64/ld-linux-x86-64.so.2
(0x0000559353f4f000)
> > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > (0x00002ab760675000)
> > > > > > > > libhdf5.so.10 =>
> > > > > > > > /software/depot/met-
8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > (0x00002ab760894000)
> > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > (0x00002ab760d6f000)
> > > > > > > > [root at maury2 bin]#
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > 8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Thank you, Greg. Can you please tell me - were the
> > > > > > > > libraries
> > > > > > > > and
> > > > > > > > the
> > > > > > > > MET
> > > > > > > > code built with the same version of the compiler. I'm
> > > > > > > > checking
> > > > > > > > to
> > > > > > > > see if,
> > > > > > > > for example, the libraries were built with gcc-6.3.0
but
> > > > > > > > the
> > > > > > > > MET
> > > > > > > > code
> > > > > > > > was
> > > > > > > > build with gcc-4.4.7.
> > > > > > > >
> > > > > > > > It sounds like we need the libraries and the MET code
to
> > > > > > > > be
> > > > > > > > built
> > > > > > > > with the
> > > > > > > > same version of the compiler, in this case.
> > > > > > > >
> > > > > > > > Thanks for any information you can provide.
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
> > > > > > > > Contractor,
> > > > > > > > Code
> > > > > > > > 7501.1
> > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > <URL:
> > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > > Find the logs attached.
> > > > > > > > >
> > > > > > > > > Greg
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
> > > > > > > > > MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Could you please run the following:
> > > > > > > > >
> > > > > > > > > which pb2nc
> > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > >
> > > > > > > > > and send me the output?
> > > > > > > > >
> > > > > > > > > Please also send your config.log and make.log file.
> > > > > > > > >
> > > > > > > > > Thank you!
> > > > > > > > >
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
> > > > > > > > > Contractor,
> > > > > > > > > Code
> > > > > > > > 7501.1
> > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <URL:
> > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > I used the buildscript. It should build all of the
> > > > > > > > > > external
> > > > > > > > > > libraries,
> > > > > > > > so
> > > > > > > > > > I believe everything was built with the same
> > > > > > > > > > compiler.
> > > > > > > > > >
> > > > > > > > > > Greg
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > > > MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > Hi Greg. Our developer suspects it may be a
> > > > > > > > > > mismatched
> > > > > > > > compiler/library
> > > > > > > > > > version. Was BUFRLIB installed with the same
> > > > > > > > > > compiler
> > > > > > > > > > as
> > > > > > > > > > MET?
> > > > > > > > > > Also,
> > > > > > > > > what
> > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > >
> > > > > > > > > > Thanks,
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > wrote:
> > > > > > > > > >
> > > > > > > > > > > Hi Greg. I am checking in with another
developer
> > > > > > > > > > > regarding
> > > > > > > > > > > the
> > > > > > > > > > > error
> > > > > > > > > you
> > > > > > > > > > > experienced. Thank you for your patience.
> > > > > > > > > > >
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr.
Gregory,
> > > > > > > > > > > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >
> > > > > > > > > > >>
> > > > > > > > > > >> <URL:
> > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >> >
> > > > > > > > > > >>
> > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > >>
> > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > > > > >> Copyright (C) 2010 Free Software Foundation,
Inc.
> > > > > > > > > > >> This is free software; see the source for
copying
> > > > > > > > > > >> conditions.
> > > > > > > > > > >> There
> > > > > > > > > is
> > > > > > > > > > NO
> > > > > > > > > > >> warranty; not even for MERCHANTABILITY or
FITNESS
> > > > > > > > > > >> FOR
> > > > > > > > > > >> A
> > > > > > > > > > >> PARTICULAR
> > > > > > > > > > >> PURPOSE.
> > > > > > > > > > >>
> > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > >>
> > > > > > > > > > >> Not all of the tests passed, please see
> > > > > > > > > > >> attachment.
> > > > > > > > > > >>
> > > > > > > > > > >> Greg
> > > > > > > > > > >>
> > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > >> regarding
> > > > > > > > > > >> MET
> > > > > > > > > > >> 8.1
> > > > > > > > > > >> Julie
> > > > > > > > > > >> Prestopnik
> > > > > > > > > > >>
> > > > > > > > > > >> Thank you for letting me know. I will proceed
> > > > > > > > > > >> with
> > > > > > > > > > >> trying
> > > > > > > > > > >> to
> > > > > > > > > reproduce
> > > > > > > > > > >> the
> > > > > > > > > > >> problem using the gcc-6.3.0. I will follow up
> > > > > > > > > > >> once
> > > > > > > > > > >> I
> > > > > > > > > > >> have
> > > > > > > > > > >> more
> > > > > > > > > > >> information.
> > > > > > > > > > >>
> > > > > > > > > > >> Julie
> > > > > > > > > > >>
> > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr.
Gregory,
> > > > > > > > > > >> Contractor,
> > > > > > > > > > >> Code
> > > > > > > > > > 7501.1
> > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >>
> > > > > > > > > > >> >
> > > > > > > > > > >> > <URL:
> > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >> > >
> > > > > > > > > > >> >
> > > > > > > > > > >> > When I compiled MET 8.0 the last time, it
> > > > > > > > > > >> > worked.
> > > > > > > > > > >> > I
> > > > > > > > > > >> > was
> > > > > > > > > > >> > also
> > > > > > > > > > >> > able
> > > > > > > > to
> > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > >> >
> > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > >> > Password:
> > > > > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
> > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > >> >
> > > > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > > > > >> >
> > > > > > > > > > >> > You are accessing a U.S. Government (USG)
> > > > > > > > > > >> > Information
> > > > > > > > > > >> > System
> > > > > > > > > > >> > (IS)
> > > > > > > > > that
> > > > > > > > > > >> is
> > > > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > > > >> > By using this IS (which includes any device
> > > > > > > > > > >> > attached
> > > > > > > > > > >> > to
> > > > > > > > > > >> > this
> > > > > > > > > > >> > IS),
> > > > > > > > > you
> > > > > > > > > > >> > consent to the following conditions:
> > > > > > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > > > > > >> > communications
> > > > > > > > > > >> > on
> > > > > > > > > > >> > this
> > > > > > > > IS
> > > > > > > > > > for
> > > > > > > > > > >> > purposes including, but not limited to,
> > > > > > > > > > >> > penetration testing, COMSEC monitoring,
network
> > > > > > > > > > >> > operations
> > > > > > > > > > >> > and
> > > > > > > > > > defense,
> > > > > > > > > > >> > personnel misconduct (PM), law enforcement
(LE),
> > > > > > > > > > >> > and counterintelligence (CI) investigations.
> > > > > > > > > > >> > -At any time, the USG may inspect and seize
data
> > > > > > > > > > >> > stored
> > > > > > > > > > >> > on
> > > > > > > > > > >> > this
> > > > > > > > IS.
> > > > > > > > > > >> > -Communications using, or data stored on,
this
> > > > > > > > > > >> > IS
> > > > > > > > > > >> > are
> > > > > > > > > > >> > not
> > > > > > > > > > >> > private,
> > > > > > > > > are
> > > > > > > > > > >> > subject to routine monitoring, interception,
> > > > > > > > > > >> > and search, and may be disclosed or used for
any
> > > > > > > > > > >> > USG-
> > > > > > > > > > >> > authorized
> > > > > > > > > > purpose.
> > > > > > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > > > > > >> > authentication
> > > > > > > > > > >> > and
> > > > > > > > access
> > > > > > > > > > >> > controls) to protect USG interests -- not for
> > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > >> > -Notwithstanding the above, using this IS
does
> > > > > > > > > > >> > not
> > > > > > > > > > >> > constitute
> > > > > > > > > consent
> > > > > > > > > > to
> > > > > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > > > > >> > monitoring of the content of privileged
> > > > > > > > > > >> > communications,
> > > > > > > > > > >> > or
> > > > > > > > > > >> > work
> > > > > > > > > > product,
> > > > > > > > > > >> > related to personal representation or
> > > > > > > > > > >> > services by attorneys, psychotherapists, or
> > > > > > > > > > >> > clergy,
> > > > > > > > > > >> > and
> > > > > > > > > > >> > their
> > > > > > > > > > >> assistants.
> > > > > > > > > > >> > Such communications and work product are
> > > > > > > > > > >> > private and confidential. See User Agreement
for
> > > > > > > > > > >> > details.
> > > > > > > > > > >> >
> > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > >> >
> > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > >> > regarding
> > > > > > > > > > >> > MET
> > > > > > > > > > >> > 8.1
> > > > > > > > Julie
> > > > > > > > > > >> > Prestopnik
> > > > > > > > > > >> >
> > > > > > > > > > >> > Hi Gregory. I have not tested with version
> > > > > > > > > > >> > 6.3.0
> > > > > > > > > > >> > of
> > > > > > > > > > >> > the
> > > > > > > > > > >> > gcc
> > > > > > > > > compiler,
> > > > > > > > > > >> but
> > > > > > > > > > >> > rather only with lower versions (specifically
> > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > >> > We
> > > > > > > > > > >> > would,
> > > > > > > > of
> > > > > > > > > > >> course,
> > > > > > > > > > >> > want our code to work with higher versions as
> > > > > > > > > > >> > well.
> > > > > > > > > > >> > I
> > > > > > > > > > >> > have
> > > > > > > > > > >> > not
> > > > > > > > yet
> > > > > > > > > > had
> > > > > > > > > > >> an
> > > > > > > > > > >> > opportunity to test with a higher version
like
> > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > >> > Do
> > > > > > > > > > >> > you have
> > > > > > > > > the
> > > > > > > > > > >> > ability to compile MET using a lesser version
of
> > > > > > > > > > >> > the
> > > > > > > > > > >> > gcc
> > > > > > > > > > >> > compiler
> > > > > > > > to
> > > > > > > > > > >> see if
> > > > > > > > > > >> > that clears up the issues you are
experiencing?
> > > > > > > > > > >> >
> > > > > > > > > > >> > Julie
> > > > > > > > > > >> >
> > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr.
> > > > > > > > > > >> > Gregory,
> > > > > > > > > > >> > Contractor,
> > > > > > > > Code
> > > > > > > > > > >> 7501.1
> > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >> >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > <URL:
> > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Greg
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > >> > > 7501.1
> > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > >> > > regarding
> > > > > > > > > > >> > > MET
> > > > > > > > > > >> > > 8.1
> > > > > > > > > Julie
> > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Hi Greg. Thank you for passing along your
> > > > > > > > > > >> > > config.log
> > > > > > > > > > >> > > file. I
> > > > > > > > > see a
> > > > > > > > > > >> > couple
> > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Based on those errors, it looks like you
may
> > > > > > > > > > >> > > not
> > > > > > > > > > >> > > have
> > > > > > > > > > >> > > flex
> > > > > > > > > > >> > > and
> > > > > > > > > bison
> > > > > > > > > > >> > > installed. Please install those and try
> > > > > > > > > > >> > > running
> > > > > > > > > > >> > > configure
> > > > > > > > again.
> > > > > > > > > > >> Please
> > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Also, I just wanted to address one other
> > > > > > > > > > >> > > thing.
> > > > > > > > > > >> > > In
> > > > > > > > > > >> > > your
> > > > > > > > original
> > > > > > > > > > >> email
> > > > > > > > > > >> > you
> > > > > > > > > > >> > > listed the following as part of your "MET
> > > > > > > > > > >> > > Configuration
> > > > > > > > settings":
> > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread
> > > > > > > > > > >> > > -ldl
> > > > > > > > > > >> > > -lutil
> > > > > > > > > > >> > > -lm
> > > > > > > > > -Xlinker
> > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > However, in your config.log file it looks
like
> > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > >> actually
> > > > > > > > > > >> > > set to be "-L/software/depot/anaconda-
> > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > -lpthread
> > > > > > > > > > >> > -ldl
> > > > > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which
is
> > > > > > > > > > >> > > correct
> > > > > > > > > > >> > > because
> > > > > > > > you
> > > > > > > > > > >> need
> > > > > > > > > > >> > to
> > > > > > > > > > >> > > have that -L part in there, so I just want
to
> > > > > > > > > > >> > > ensure
> > > > > > > > > > >> > > that
> > > > > > > > > > >> > > will
> > > > > > > > > stay
> > > > > > > > > > >> there
> > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Thanks,
> > > > > > > > > > >> > > Julie
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr.
> > > > > > > > > > >> > > Gregory,
> > > > > > > > > > >> > > Contractor,
> > > > > > > > > Code
> > > > > > > > > > >> > 7501.1
> > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > <URL:
> > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
configure.log
> > > > > > > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > >> > > > regarding
> > > > > > > > > > >> > > > MET
> > > > > > > > > > >> > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > I'll go ahead and assign this ticket to
> > > > > > > > > > >> > > > Julie,
> > > > > > > > > > >> > > > and
> > > > > > > > > > >> > > > she
> > > > > > > > > > >> > > > should
> > > > > > > > be
> > > > > > > > > > >> > writing
> > > > > > > > > > >> > > > you back in the next couple of days.
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > >> > > > file you
> > > > > > > > > > >> > generated
> > > > > > > > > > >> > > as
> > > > > > > > > > >> > > > well as the "config.log" file from that
same
> > > > > > > > > > >> > > > directory.
> > > > > > > > > > >> > > > So
> > > > > > > > > please
> > > > > > > > > > >> send
> > > > > > > > > > >> > > > those along when you get a chance.
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > >> > > > John
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr.
> > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > > >> > > 7501.1
> > > > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091
> > > > > > > > > > >> > > > > was
> > > > > > > > > > >> > > > > acted
> > > > > > > > > > >> > > > > upon.
> > > > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
> > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > >> > > > > Requestors:
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > > Julie helped me compiled 8.0 using gcc
> > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > >> > > > > and
> > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > 2.4.0.
> > > > > > > > > > >> The
> > > > > > > > > > >> > > user
> > > > > > > > > > >> > > > > asked for 8.1. I took notes last time,
but
> > > > > > > > > > >> > > > > running
> > > > > > > > > > >> > > > > into
> > > > > > > > > > problems:
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > >> > > > > export
MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > >> > > > > export
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> >
> > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > >> > > > > export
> > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export
> > > > > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3
-Wall
> > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> >
> > > > > > > > > > >>
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export
> > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > >> > > > > export
> > > > > > > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7
-lpthread
> > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > >> > > > > -lm
> > > > > > > > > > >> -Xlinker
> > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export MET_SUBDIR=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > > > > >> > > > > ./configure
--prefix=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > >> --enable-grib2
> > > > > > > > > > >> > > > > --enable-modis --enable-mode_graphics
> > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > >> > > configure.log
> > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > >> > > > > configure returned with non-zero (127)
> > > > > > > > > > >> > > > > status
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> >
> > > > > > > > > > >> >
> > > > > > > > > > >> >
> > > > > > > > > > >> >
> > > > > > > > > > >>
> > > > > > > > > > >>
> > > > > > > > > > >>
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Wed May 22 08:15:06 2019
Thank you, I think they must not be using the NetCDF I built in their
PATH. I ran their example without any problem.
Also, I made the change to the file and it compiled.
Greg
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Wednesday, May 22, 2019 7:11 AM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
The runntime NetCDF library is decided by LD_LIBRARY_PATH.
LD_LIBRARY_PATH can be changed by module loading or by user
configurations. If the problem happens with NetCDF, would you ask them
to run this command and check which NetCDF library is loaded?
ldd bin/<MET_tool_name> | grep netcdf
ldd bin/<MET_tool_name> | grep hdf
for example,
ldd bin/pb2nc | grep netcdf
ldd bin/pb2nc | grep hdf
ldd bin/grid_stat | grep netcdf
ldd bin/grid_stat | grep hdf
Note: There are dependency between NetCDF4 and HDF5.
Cheers,
Howard
On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> OK, we have several people who are using the 8.1 version I built. We
> use a central location:
>
> /software/depot
>
> To house all of our software. To be clear, the first build went OK,
it
> was 'make test' that failed. So the users are using that, but
someone
> ran into an error today and they asked me about NetCDF. I think it
was
> their setup. The same build was used on two different machines, one
> had an error, one didn't.
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Tuesday, May 21, 2019 5:50 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> No, external libraries are not changed.
>
> Personally, I'm using newer NetCDF library (4.6.x instead of
4.4.1.1).
>
> Cheers,
> Howard
>
> On Tue May 21 18:39:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > No, that is not what I am asking. Every time I build, I use your
> > script which builds everything.
> >
> > What I am asking is, did the versions of the external libraries
> > change?
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Tuesday, May 21, 2019 5:34 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Yes, the third party libraries should be compiled with newer
version.
> >
> > The compile error with gnu 7.3.0 happens with gnu 6.3.0, too.
> > The fix/patch is not ready officially. One file has to be
corrected
> > to support newer version gnu compiler. Would you replace
data_line.cc
> > with attached file or modify it manually?
> >
> > Filename:
> > met-8.1/src/basic/vx_util/data_line.cc
> >
> > line 202:
> >
> > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> >
> > line 218:
> >
> > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> >
> > Cheers,
> > Howard
> >
> > On Tue May 21 18:21:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > Did new external libraries need to be built with 8.1?
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, May 16, 2019 4:01 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > No new tools but many enhancements.
> > >
> > > It's available at
> > > https://dtcenter.org/community-code/model-evaluation-tools-
met/met-
> > > version-8-1
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Maybe you can answer one question while I try to reinstall
> > > > everything. What features does 8.1 provide over 8.0?
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > Prestopnik
> > > >
> > > > Would try this command at /software/depot/met-8.1/met-
8.1/scripts
> > > > directory?
> > > >
> > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > echo $LD_LIBRARY_PATH
> > > >
> > > > 2. Save LD_LIBRARY_PATH
> > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > OR
> > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > >
> > > > 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-
2.4.0/lib
> > > >
> > > > 4. Check which libgfortran.so at /software/depot/met-8.1/met-
> > > > 8.1/scripts directory.
> > > >
> > > > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran OR ldd
> > > > ../bin/pb2nc | grep libgfortran
> > > >
> > > > 5. Check libgfortran version (should be libgfortran.so.3, not
> > > > so.4)
> > > >
> > > > 6. Run the failed command manually at /software/depot/met-
> > > > 8.1/met-
> > > > 8.1/scripts directory if libgfortran.so.3.
> > > >
> > > > ../src/tools/other/pb2nc/pb2nc \
> > > >
> > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > \
> > > > ../out/pb2nc/sample_pb.nc \
> > > > config/PB2NCConfig_G212 \
> > > > -v 2
> > > >
> > > > 7. Change back LD_LIBRARY_PATH
> > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > OR
> > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > >
> > > > On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-grib2-
> > > > > support
> > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > (0x0000003453800000)
> > > > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > > > > libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> > > > > libpng16.so.16 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> > > > > libz.so.1 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libz.so.1
> > > > > (0x00007f7f19af4000)
> > > > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
(0x00007f7f198a6000)
> > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> > > > > libgsl.so.19 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libgslcblas.so.0 (0x00007f7f18eeb000)
> > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libjpeg.so.9
> > > > > (0x00007f7f18c99000)
> > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libstdc++.so.6
> > > > > (0x00007f7f18b58000)
> > > > > libgcc_s.so.1 =>
> > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > (0x00007f7f18b42000)
> > > > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libhdf5_hl.so.10 (0x00007f7f18922000)
> > > > > libhdf5.so.10 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > > > > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > > > > [ramos at lorenz bin]$
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > MET is expecting "libpython2.7.so" to enable python support.
> > > > >
> > > > > A log message shows the python was not enabled. Is python
> > > > > supporting is critical?
> > > > >
> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > > > --enable-lidar2nc > configure.log 2>&1
> > > > >
> > > > > If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> > > > > 1. Make sure python is not enabled
> > > > > no "--enable-python" option for ./configure
> > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
> > > > > LD_LIBRARY_PATH at the build time and runtime both.
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > > On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > >
> > > > > > ramos at leo1:~> gcc --version
> > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright (C) 2017
Free
> > > > > > Software Foundation, Inc.
> > > > > > This is free software; see the source for copying
conditions.
> > > > > > There
> > > > > > is NO
> > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > PARTICULAR PURPOSE.
> > > > > >
> > > > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC) 7.3.0
> > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free Software
> > > > > > Foundation, Inc.
> > > > > > This is free software; see the source for copying
conditions.
> > > > > > There
> > > > > > is NO
> > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > PARTICULAR PURPOSE.
> > > > > >
> > > > > > ramos at leo1:~>
> > > > > >
> > > > > > We don't have that version on our Red Hat systems. Met 8.0
> > > > > > worked on RH, but 8.1 failed on the 'make test'. The user
> > > > > > says
> > > > > > she is fine with the executables so far. I will have to
build
> > > > > > a
> > > > > > gfortran 7.x version.
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Hello,
> > > > > >
> > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > >
> > > > > > The problem was caused by the path for python library
> > > > > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4
exists
> > > > > > there
> > > > > > from the ldd output. It was used on building MET. MET was
> > > > > > compiled
> > > > > > with gcc 4.4.7 which supports only libgfortran.so.3, and
> > > > > > linked
> > > > > > with
> > > > > > libgfortran.so.4 because of MET_PYTHON_LD configuration.
Some
> > > > > > libraries do not support the backward compatibility.
> > > > > > libgfortran.so
> > > > > > is
> > > > > > one of them. In this case, the compiler version and
library
> > > > > > version
> > > > > > should match.
> > > > > >
> > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
> > > > > > 8.1/bin/pb2nc
> > > > > > |grep
> > > > > > gfortran
> > > > > > libgfortran.so.4 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > >
> > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\
-export-
> > > > > > dynamic
> > > > > >
> > > > > > The solution is compiling third party libraries and MET
with
> > > > > > version
> > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > > > > libgfortran.so.5,
> > > > > > So the same problem will happen if MET is built with
> > > > > > gcc/gfortran
> > > > > > 6.x
> > > > > > or gcc/gfortran 8.x.
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > > On Mon May 13 18:36:04 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > Attached is the config.log for NetCDf it shows
/usr/bin/gcc
> > > > > > >
> > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat
> > > > > > > version.
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
> > > > > > > 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Thank you. Unfortunately, that does not tell me if the
> > > > > > > libraries
> > > > > > > and
> > > > > > > the
> > > > > > > MET code were built with the same version of the
compiler.
> > > > > > > I
> > > > > > > also
> > > > > > > do
> > > > > > > not
> > > > > > > see bufrlib in that list.
> > > > > > >
> > > > > > > Can you please tell me - were the libraries and the MET
> > > > > > > code
> > > > > > > built
> > > > > > > with the
> > > > > > > same version of the compiler? I'm checking to see if,
for
> > > > > > > example,
> > > > > > > the
> > > > > > > libraries were built with gcc-6.3.0 but the MET code was
> > > > > > > build
> > > > > > > with
> > > > > > > gcc-4.4.7.
> > > > > > >
> > > > > > > Thanks!
> > > > > > >
> > > > > > > Julie
> > > > > > >
> > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
> > > > > > > Contractor,
> > > > > > > Code
> > > > > > > 7501.1
> > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > <URL:
> > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >
> > > > > > > >
> > > > > > > > You can see I am using those libraries for MET 8.1:
> > > > > > > >
> > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > (0x00002ab75e63b000)
> > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > (0x00002ab75e858000)
> > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > libpng16.so.16 =>
> > > > > > > > /software/depot/met-
8.1/external_libs/lib/libpng16.so.16
> > > > > > > > (0x00002ab75ec60000)
> > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > (0x00002ab75ee92000)
> > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > (0x00002ab75f32f000)
> > > > > > > > libnetcdf.so.11 =>
> > > > > > > > /software/depot/met-
8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > (0x00002ab75f57c000)
> > > > > > > > libgsl.so.19 =>
> > > > > > > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > libgslcblas.so.0 =>
> > > > > > > > /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > (0x00002ab75ff37000)
> > > > > > > > libstdc++.so.6 =>
> > > > > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > > > > (0x00002ab760189000)
> > > > > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > (0x00002ab7602cb000)
> > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > (0x00002ab7602e0000)
> > > > > > > > /lib64/ld-linux-x86-64.so.2
(0x0000559353f4f000)
> > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > (0x00002ab760675000)
> > > > > > > > libhdf5.so.10 =>
> > > > > > > > /software/depot/met-
8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > (0x00002ab760894000)
> > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > (0x00002ab760d6f000)
> > > > > > > > [root at maury2 bin]#
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > 8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Thank you, Greg. Can you please tell me - were the
> > > > > > > > libraries
> > > > > > > > and
> > > > > > > > the
> > > > > > > > MET
> > > > > > > > code built with the same version of the compiler. I'm
> > > > > > > > checking
> > > > > > > > to
> > > > > > > > see if,
> > > > > > > > for example, the libraries were built with gcc-6.3.0
but
> > > > > > > > the
> > > > > > > > MET
> > > > > > > > code
> > > > > > > > was
> > > > > > > > build with gcc-4.4.7.
> > > > > > > >
> > > > > > > > It sounds like we need the libraries and the MET code
to
> > > > > > > > be
> > > > > > > > built
> > > > > > > > with the
> > > > > > > > same version of the compiler, in this case.
> > > > > > > >
> > > > > > > > Thanks for any information you can provide.
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
> > > > > > > > Contractor,
> > > > > > > > Code
> > > > > > > > 7501.1
> > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > <URL:
> > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > > Find the logs attached.
> > > > > > > > >
> > > > > > > > > Greg
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
> > > > > > > > > MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Could you please run the following:
> > > > > > > > >
> > > > > > > > > which pb2nc
> > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > >
> > > > > > > > > and send me the output?
> > > > > > > > >
> > > > > > > > > Please also send your config.log and make.log file.
> > > > > > > > >
> > > > > > > > > Thank you!
> > > > > > > > >
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
> > > > > > > > > Contractor,
> > > > > > > > > Code
> > > > > > > > 7501.1
> > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <URL:
> > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > I used the buildscript. It should build all of the
> > > > > > > > > > external
> > > > > > > > > > libraries,
> > > > > > > > so
> > > > > > > > > > I believe everything was built with the same
> > > > > > > > > > compiler.
> > > > > > > > > >
> > > > > > > > > > Greg
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > > > MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > Hi Greg. Our developer suspects it may be a
> > > > > > > > > > mismatched
> > > > > > > > compiler/library
> > > > > > > > > > version. Was BUFRLIB installed with the same
> > > > > > > > > > compiler
> > > > > > > > > > as
> > > > > > > > > > MET?
> > > > > > > > > > Also,
> > > > > > > > > what
> > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > >
> > > > > > > > > > Thanks,
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > wrote:
> > > > > > > > > >
> > > > > > > > > > > Hi Greg. I am checking in with another
developer
> > > > > > > > > > > regarding
> > > > > > > > > > > the
> > > > > > > > > > > error
> > > > > > > > > you
> > > > > > > > > > > experienced. Thank you for your patience.
> > > > > > > > > > >
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr.
Gregory,
> > > > > > > > > > > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >
> > > > > > > > > > >>
> > > > > > > > > > >> <URL:
> > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >> >
> > > > > > > > > > >>
> > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > >>
> > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > > > > >> Copyright (C) 2010 Free Software Foundation,
Inc.
> > > > > > > > > > >> This is free software; see the source for
copying
> > > > > > > > > > >> conditions.
> > > > > > > > > > >> There
> > > > > > > > > is
> > > > > > > > > > NO
> > > > > > > > > > >> warranty; not even for MERCHANTABILITY or
FITNESS
> > > > > > > > > > >> FOR
> > > > > > > > > > >> A
> > > > > > > > > > >> PARTICULAR
> > > > > > > > > > >> PURPOSE.
> > > > > > > > > > >>
> > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > >>
> > > > > > > > > > >> Not all of the tests passed, please see
> > > > > > > > > > >> attachment.
> > > > > > > > > > >>
> > > > > > > > > > >> Greg
> > > > > > > > > > >>
> > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > >> regarding
> > > > > > > > > > >> MET
> > > > > > > > > > >> 8.1
> > > > > > > > > > >> Julie
> > > > > > > > > > >> Prestopnik
> > > > > > > > > > >>
> > > > > > > > > > >> Thank you for letting me know. I will proceed
> > > > > > > > > > >> with
> > > > > > > > > > >> trying
> > > > > > > > > > >> to
> > > > > > > > > reproduce
> > > > > > > > > > >> the
> > > > > > > > > > >> problem using the gcc-6.3.0. I will follow up
> > > > > > > > > > >> once
> > > > > > > > > > >> I
> > > > > > > > > > >> have
> > > > > > > > > > >> more
> > > > > > > > > > >> information.
> > > > > > > > > > >>
> > > > > > > > > > >> Julie
> > > > > > > > > > >>
> > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr.
Gregory,
> > > > > > > > > > >> Contractor,
> > > > > > > > > > >> Code
> > > > > > > > > > 7501.1
> > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >>
> > > > > > > > > > >> >
> > > > > > > > > > >> > <URL:
> > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >> > >
> > > > > > > > > > >> >
> > > > > > > > > > >> > When I compiled MET 8.0 the last time, it
> > > > > > > > > > >> > worked.
> > > > > > > > > > >> > I
> > > > > > > > > > >> > was
> > > > > > > > > > >> > also
> > > > > > > > > > >> > able
> > > > > > > > to
> > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > >> >
> > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > >> > Password:
> > > > > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
> > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > >> >
> > > > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > > > > >> >
> > > > > > > > > > >> > You are accessing a U.S. Government (USG)
> > > > > > > > > > >> > Information
> > > > > > > > > > >> > System
> > > > > > > > > > >> > (IS)
> > > > > > > > > that
> > > > > > > > > > >> is
> > > > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > > > >> > By using this IS (which includes any device
> > > > > > > > > > >> > attached
> > > > > > > > > > >> > to
> > > > > > > > > > >> > this
> > > > > > > > > > >> > IS),
> > > > > > > > > you
> > > > > > > > > > >> > consent to the following conditions:
> > > > > > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > > > > > >> > communications
> > > > > > > > > > >> > on
> > > > > > > > > > >> > this
> > > > > > > > IS
> > > > > > > > > > for
> > > > > > > > > > >> > purposes including, but not limited to,
> > > > > > > > > > >> > penetration testing, COMSEC monitoring,
network
> > > > > > > > > > >> > operations
> > > > > > > > > > >> > and
> > > > > > > > > > defense,
> > > > > > > > > > >> > personnel misconduct (PM), law enforcement
(LE),
> > > > > > > > > > >> > and counterintelligence (CI) investigations.
> > > > > > > > > > >> > -At any time, the USG may inspect and seize
data
> > > > > > > > > > >> > stored
> > > > > > > > > > >> > on
> > > > > > > > > > >> > this
> > > > > > > > IS.
> > > > > > > > > > >> > -Communications using, or data stored on,
this
> > > > > > > > > > >> > IS
> > > > > > > > > > >> > are
> > > > > > > > > > >> > not
> > > > > > > > > > >> > private,
> > > > > > > > > are
> > > > > > > > > > >> > subject to routine monitoring, interception,
> > > > > > > > > > >> > and search, and may be disclosed or used for
any
> > > > > > > > > > >> > USG-
> > > > > > > > > > >> > authorized
> > > > > > > > > > purpose.
> > > > > > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > > > > > >> > authentication
> > > > > > > > > > >> > and
> > > > > > > > access
> > > > > > > > > > >> > controls) to protect USG interests -- not for
> > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > >> > -Notwithstanding the above, using this IS
does
> > > > > > > > > > >> > not
> > > > > > > > > > >> > constitute
> > > > > > > > > consent
> > > > > > > > > > to
> > > > > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > > > > >> > monitoring of the content of privileged
> > > > > > > > > > >> > communications,
> > > > > > > > > > >> > or
> > > > > > > > > > >> > work
> > > > > > > > > > product,
> > > > > > > > > > >> > related to personal representation or
> > > > > > > > > > >> > services by attorneys, psychotherapists, or
> > > > > > > > > > >> > clergy,
> > > > > > > > > > >> > and
> > > > > > > > > > >> > their
> > > > > > > > > > >> assistants.
> > > > > > > > > > >> > Such communications and work product are
> > > > > > > > > > >> > private and confidential. See User Agreement
for
> > > > > > > > > > >> > details.
> > > > > > > > > > >> >
> > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > >> >
> > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > >> > regarding
> > > > > > > > > > >> > MET
> > > > > > > > > > >> > 8.1
> > > > > > > > Julie
> > > > > > > > > > >> > Prestopnik
> > > > > > > > > > >> >
> > > > > > > > > > >> > Hi Gregory. I have not tested with version
> > > > > > > > > > >> > 6.3.0
> > > > > > > > > > >> > of
> > > > > > > > > > >> > the
> > > > > > > > > > >> > gcc
> > > > > > > > > compiler,
> > > > > > > > > > >> but
> > > > > > > > > > >> > rather only with lower versions (specifically
> > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > >> > We
> > > > > > > > > > >> > would,
> > > > > > > > of
> > > > > > > > > > >> course,
> > > > > > > > > > >> > want our code to work with higher versions as
> > > > > > > > > > >> > well.
> > > > > > > > > > >> > I
> > > > > > > > > > >> > have
> > > > > > > > > > >> > not
> > > > > > > > yet
> > > > > > > > > > had
> > > > > > > > > > >> an
> > > > > > > > > > >> > opportunity to test with a higher version
like
> > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > >> > Do
> > > > > > > > > > >> > you have
> > > > > > > > > the
> > > > > > > > > > >> > ability to compile MET using a lesser version
of
> > > > > > > > > > >> > the
> > > > > > > > > > >> > gcc
> > > > > > > > > > >> > compiler
> > > > > > > > to
> > > > > > > > > > >> see if
> > > > > > > > > > >> > that clears up the issues you are
experiencing?
> > > > > > > > > > >> >
> > > > > > > > > > >> > Julie
> > > > > > > > > > >> >
> > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr.
> > > > > > > > > > >> > Gregory,
> > > > > > > > > > >> > Contractor,
> > > > > > > > Code
> > > > > > > > > > >> 7501.1
> > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >> >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > <URL:
> > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Greg
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > >> > > 7501.1
> > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > >> > > regarding
> > > > > > > > > > >> > > MET
> > > > > > > > > > >> > > 8.1
> > > > > > > > > Julie
> > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Hi Greg. Thank you for passing along your
> > > > > > > > > > >> > > config.log
> > > > > > > > > > >> > > file. I
> > > > > > > > > see a
> > > > > > > > > > >> > couple
> > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Based on those errors, it looks like you
may
> > > > > > > > > > >> > > not
> > > > > > > > > > >> > > have
> > > > > > > > > > >> > > flex
> > > > > > > > > > >> > > and
> > > > > > > > > bison
> > > > > > > > > > >> > > installed. Please install those and try
> > > > > > > > > > >> > > running
> > > > > > > > > > >> > > configure
> > > > > > > > again.
> > > > > > > > > > >> Please
> > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Also, I just wanted to address one other
> > > > > > > > > > >> > > thing.
> > > > > > > > > > >> > > In
> > > > > > > > > > >> > > your
> > > > > > > > original
> > > > > > > > > > >> email
> > > > > > > > > > >> > you
> > > > > > > > > > >> > > listed the following as part of your "MET
> > > > > > > > > > >> > > Configuration
> > > > > > > > settings":
> > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread
> > > > > > > > > > >> > > -ldl
> > > > > > > > > > >> > > -lutil
> > > > > > > > > > >> > > -lm
> > > > > > > > > -Xlinker
> > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > However, in your config.log file it looks
like
> > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > >> actually
> > > > > > > > > > >> > > set to be "-L/software/depot/anaconda-
> > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > -lpthread
> > > > > > > > > > >> > -ldl
> > > > > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which
is
> > > > > > > > > > >> > > correct
> > > > > > > > > > >> > > because
> > > > > > > > you
> > > > > > > > > > >> need
> > > > > > > > > > >> > to
> > > > > > > > > > >> > > have that -L part in there, so I just want
to
> > > > > > > > > > >> > > ensure
> > > > > > > > > > >> > > that
> > > > > > > > > > >> > > will
> > > > > > > > > stay
> > > > > > > > > > >> there
> > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Thanks,
> > > > > > > > > > >> > > Julie
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr.
> > > > > > > > > > >> > > Gregory,
> > > > > > > > > > >> > > Contractor,
> > > > > > > > > Code
> > > > > > > > > > >> > 7501.1
> > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > <URL:
> > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
configure.log
> > > > > > > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > >> > > > regarding
> > > > > > > > > > >> > > > MET
> > > > > > > > > > >> > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > I'll go ahead and assign this ticket to
> > > > > > > > > > >> > > > Julie,
> > > > > > > > > > >> > > > and
> > > > > > > > > > >> > > > she
> > > > > > > > > > >> > > > should
> > > > > > > > be
> > > > > > > > > > >> > writing
> > > > > > > > > > >> > > > you back in the next couple of days.
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > >> > > > file you
> > > > > > > > > > >> > generated
> > > > > > > > > > >> > > as
> > > > > > > > > > >> > > > well as the "config.log" file from that
same
> > > > > > > > > > >> > > > directory.
> > > > > > > > > > >> > > > So
> > > > > > > > > please
> > > > > > > > > > >> send
> > > > > > > > > > >> > > > those along when you get a chance.
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > >> > > > John
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr.
> > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > > >> > > 7501.1
> > > > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091
> > > > > > > > > > >> > > > > was
> > > > > > > > > > >> > > > > acted
> > > > > > > > > > >> > > > > upon.
> > > > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
> > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > >> > > > > Requestors:
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > > Julie helped me compiled 8.0 using gcc
> > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > >> > > > > and
> > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > 2.4.0.
> > > > > > > > > > >> The
> > > > > > > > > > >> > > user
> > > > > > > > > > >> > > > > asked for 8.1. I took notes last time,
but
> > > > > > > > > > >> > > > > running
> > > > > > > > > > >> > > > > into
> > > > > > > > > > problems:
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > >> > > > > export
MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > >> > > > > export
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> >
> > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > >> > > > > export
> > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export
> > > > > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3
-Wall
> > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> >
> > > > > > > > > > >>
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export
> > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > >> > > > > export
> > > > > > > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7
-lpthread
> > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > >> > > > > -lm
> > > > > > > > > > >> -Xlinker
> > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export MET_SUBDIR=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > > > > >> > > > > ./configure
--prefix=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > >> --enable-grib2
> > > > > > > > > > >> > > > > --enable-modis --enable-mode_graphics
> > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > >> > > configure.log
> > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > >> > > > > configure returned with non-zero (127)
> > > > > > > > > > >> > > > > status
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> >
> > > > > > > > > > >> >
> > > > > > > > > > >> >
> > > > > > > > > > >> >
> > > > > > > > > > >>
> > > > > > > > > > >>
> > > > > > > > > > >>
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Wed May 22 11:15:26 2019
This is the current error I get at the end of 'make test':
[ramos at lorenz met-8.1a]$ more make_test.log
cd scripts; make
make[1]: Entering directory `/software/depot/met-8.1a/met-
8.1a/scripts'
*** Running ASCII2NC to reformat ASCII point observations into NetCDF
***
../src/tools/other/ascii2nc/ascii2nc \
../data/sample_obs/ascii/sample_ascii_obs.txt \
../out/ascii2nc/sample_ascii.nc \
-v 2
ERROR :
ERROR : CommandLine::is_switch(const char *) const -> empty string!
ERROR :
make[1]: *** [ascii2nc] Error 1
make[1]: Leaving directory `/software/depot/met-8.1a/met-8.1a/scripts'
make: *** [test] Error 2
[ramos at lorenz met-8.1a]$
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Wednesday, May 22, 2019 7:11 AM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
The runntime NetCDF library is decided by LD_LIBRARY_PATH.
LD_LIBRARY_PATH can be changed by module loading or by user
configurations. If the problem happens with NetCDF, would you ask them
to run this command and check which NetCDF library is loaded?
ldd bin/<MET_tool_name> | grep netcdf
ldd bin/<MET_tool_name> | grep hdf
for example,
ldd bin/pb2nc | grep netcdf
ldd bin/pb2nc | grep hdf
ldd bin/grid_stat | grep netcdf
ldd bin/grid_stat | grep hdf
Note: There are dependency between NetCDF4 and HDF5.
Cheers,
Howard
On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> OK, we have several people who are using the 8.1 version I built. We
> use a central location:
>
> /software/depot
>
> To house all of our software. To be clear, the first build went OK,
it
> was 'make test' that failed. So the users are using that, but
someone
> ran into an error today and they asked me about NetCDF. I think it
was
> their setup. The same build was used on two different machines, one
> had an error, one didn't.
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Tuesday, May 21, 2019 5:50 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> No, external libraries are not changed.
>
> Personally, I'm using newer NetCDF library (4.6.x instead of
4.4.1.1).
>
> Cheers,
> Howard
>
> On Tue May 21 18:39:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > No, that is not what I am asking. Every time I build, I use your
> > script which builds everything.
> >
> > What I am asking is, did the versions of the external libraries
> > change?
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Tuesday, May 21, 2019 5:34 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Yes, the third party libraries should be compiled with newer
version.
> >
> > The compile error with gnu 7.3.0 happens with gnu 6.3.0, too.
> > The fix/patch is not ready officially. One file has to be
corrected
> > to support newer version gnu compiler. Would you replace
data_line.cc
> > with attached file or modify it manually?
> >
> > Filename:
> > met-8.1/src/basic/vx_util/data_line.cc
> >
> > line 202:
> >
> > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> >
> > line 218:
> >
> > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> >
> > Cheers,
> > Howard
> >
> > On Tue May 21 18:21:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > Did new external libraries need to be built with 8.1?
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, May 16, 2019 4:01 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > No new tools but many enhancements.
> > >
> > > It's available at
> > > https://dtcenter.org/community-code/model-evaluation-tools-
met/met-
> > > version-8-1
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Maybe you can answer one question while I try to reinstall
> > > > everything. What features does 8.1 provide over 8.0?
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > Prestopnik
> > > >
> > > > Would try this command at /software/depot/met-8.1/met-
8.1/scripts
> > > > directory?
> > > >
> > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > echo $LD_LIBRARY_PATH
> > > >
> > > > 2. Save LD_LIBRARY_PATH
> > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > OR
> > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > >
> > > > 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-
2.4.0/lib
> > > >
> > > > 4. Check which libgfortran.so at /software/depot/met-8.1/met-
> > > > 8.1/scripts directory.
> > > >
> > > > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran OR ldd
> > > > ../bin/pb2nc | grep libgfortran
> > > >
> > > > 5. Check libgfortran version (should be libgfortran.so.3, not
> > > > so.4)
> > > >
> > > > 6. Run the failed command manually at /software/depot/met-
> > > > 8.1/met-
> > > > 8.1/scripts directory if libgfortran.so.3.
> > > >
> > > > ../src/tools/other/pb2nc/pb2nc \
> > > >
> > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > \
> > > > ../out/pb2nc/sample_pb.nc \
> > > > config/PB2NCConfig_G212 \
> > > > -v 2
> > > >
> > > > 7. Change back LD_LIBRARY_PATH
> > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > OR
> > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > >
> > > > On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-grib2-
> > > > > support
> > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > (0x0000003453800000)
> > > > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > > > > libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> > > > > libpng16.so.16 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> > > > > libz.so.1 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libz.so.1
> > > > > (0x00007f7f19af4000)
> > > > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
(0x00007f7f198a6000)
> > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> > > > > libgsl.so.19 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libgslcblas.so.0 (0x00007f7f18eeb000)
> > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libjpeg.so.9
> > > > > (0x00007f7f18c99000)
> > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libstdc++.so.6
> > > > > (0x00007f7f18b58000)
> > > > > libgcc_s.so.1 =>
> > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > (0x00007f7f18b42000)
> > > > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libhdf5_hl.so.10 (0x00007f7f18922000)
> > > > > libhdf5.so.10 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > > > > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > > > > [ramos at lorenz bin]$
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > MET is expecting "libpython2.7.so" to enable python support.
> > > > >
> > > > > A log message shows the python was not enabled. Is python
> > > > > supporting is critical?
> > > > >
> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > > > --enable-lidar2nc > configure.log 2>&1
> > > > >
> > > > > If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> > > > > 1. Make sure python is not enabled
> > > > > no "--enable-python" option for ./configure
> > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
> > > > > LD_LIBRARY_PATH at the build time and runtime both.
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > > On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > >
> > > > > > ramos at leo1:~> gcc --version
> > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright (C) 2017
Free
> > > > > > Software Foundation, Inc.
> > > > > > This is free software; see the source for copying
conditions.
> > > > > > There
> > > > > > is NO
> > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > PARTICULAR PURPOSE.
> > > > > >
> > > > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC) 7.3.0
> > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free Software
> > > > > > Foundation, Inc.
> > > > > > This is free software; see the source for copying
conditions.
> > > > > > There
> > > > > > is NO
> > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > PARTICULAR PURPOSE.
> > > > > >
> > > > > > ramos at leo1:~>
> > > > > >
> > > > > > We don't have that version on our Red Hat systems. Met 8.0
> > > > > > worked on RH, but 8.1 failed on the 'make test'. The user
> > > > > > says
> > > > > > she is fine with the executables so far. I will have to
build
> > > > > > a
> > > > > > gfortran 7.x version.
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Hello,
> > > > > >
> > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > >
> > > > > > The problem was caused by the path for python library
> > > > > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4
exists
> > > > > > there
> > > > > > from the ldd output. It was used on building MET. MET was
> > > > > > compiled
> > > > > > with gcc 4.4.7 which supports only libgfortran.so.3, and
> > > > > > linked
> > > > > > with
> > > > > > libgfortran.so.4 because of MET_PYTHON_LD configuration.
Some
> > > > > > libraries do not support the backward compatibility.
> > > > > > libgfortran.so
> > > > > > is
> > > > > > one of them. In this case, the compiler version and
library
> > > > > > version
> > > > > > should match.
> > > > > >
> > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
> > > > > > 8.1/bin/pb2nc
> > > > > > |grep
> > > > > > gfortran
> > > > > > libgfortran.so.4 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > >
> > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\
-export-
> > > > > > dynamic
> > > > > >
> > > > > > The solution is compiling third party libraries and MET
with
> > > > > > version
> > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > > > > libgfortran.so.5,
> > > > > > So the same problem will happen if MET is built with
> > > > > > gcc/gfortran
> > > > > > 6.x
> > > > > > or gcc/gfortran 8.x.
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > > On Mon May 13 18:36:04 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > Attached is the config.log for NetCDf it shows
/usr/bin/gcc
> > > > > > >
> > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat
> > > > > > > version.
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
> > > > > > > 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Thank you. Unfortunately, that does not tell me if the
> > > > > > > libraries
> > > > > > > and
> > > > > > > the
> > > > > > > MET code were built with the same version of the
compiler.
> > > > > > > I
> > > > > > > also
> > > > > > > do
> > > > > > > not
> > > > > > > see bufrlib in that list.
> > > > > > >
> > > > > > > Can you please tell me - were the libraries and the MET
> > > > > > > code
> > > > > > > built
> > > > > > > with the
> > > > > > > same version of the compiler? I'm checking to see if,
for
> > > > > > > example,
> > > > > > > the
> > > > > > > libraries were built with gcc-6.3.0 but the MET code was
> > > > > > > build
> > > > > > > with
> > > > > > > gcc-4.4.7.
> > > > > > >
> > > > > > > Thanks!
> > > > > > >
> > > > > > > Julie
> > > > > > >
> > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
> > > > > > > Contractor,
> > > > > > > Code
> > > > > > > 7501.1
> > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > <URL:
> > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >
> > > > > > > >
> > > > > > > > You can see I am using those libraries for MET 8.1:
> > > > > > > >
> > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > (0x00002ab75e63b000)
> > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > (0x00002ab75e858000)
> > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > libpng16.so.16 =>
> > > > > > > > /software/depot/met-
8.1/external_libs/lib/libpng16.so.16
> > > > > > > > (0x00002ab75ec60000)
> > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > (0x00002ab75ee92000)
> > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > (0x00002ab75f32f000)
> > > > > > > > libnetcdf.so.11 =>
> > > > > > > > /software/depot/met-
8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > (0x00002ab75f57c000)
> > > > > > > > libgsl.so.19 =>
> > > > > > > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > libgslcblas.so.0 =>
> > > > > > > > /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > (0x00002ab75ff37000)
> > > > > > > > libstdc++.so.6 =>
> > > > > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > > > > (0x00002ab760189000)
> > > > > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > (0x00002ab7602cb000)
> > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > (0x00002ab7602e0000)
> > > > > > > > /lib64/ld-linux-x86-64.so.2
(0x0000559353f4f000)
> > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > (0x00002ab760675000)
> > > > > > > > libhdf5.so.10 =>
> > > > > > > > /software/depot/met-
8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > (0x00002ab760894000)
> > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > (0x00002ab760d6f000)
> > > > > > > > [root at maury2 bin]#
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > 8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Thank you, Greg. Can you please tell me - were the
> > > > > > > > libraries
> > > > > > > > and
> > > > > > > > the
> > > > > > > > MET
> > > > > > > > code built with the same version of the compiler. I'm
> > > > > > > > checking
> > > > > > > > to
> > > > > > > > see if,
> > > > > > > > for example, the libraries were built with gcc-6.3.0
but
> > > > > > > > the
> > > > > > > > MET
> > > > > > > > code
> > > > > > > > was
> > > > > > > > build with gcc-4.4.7.
> > > > > > > >
> > > > > > > > It sounds like we need the libraries and the MET code
to
> > > > > > > > be
> > > > > > > > built
> > > > > > > > with the
> > > > > > > > same version of the compiler, in this case.
> > > > > > > >
> > > > > > > > Thanks for any information you can provide.
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
> > > > > > > > Contractor,
> > > > > > > > Code
> > > > > > > > 7501.1
> > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > <URL:
> > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > > Find the logs attached.
> > > > > > > > >
> > > > > > > > > Greg
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
> > > > > > > > > MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Could you please run the following:
> > > > > > > > >
> > > > > > > > > which pb2nc
> > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > >
> > > > > > > > > and send me the output?
> > > > > > > > >
> > > > > > > > > Please also send your config.log and make.log file.
> > > > > > > > >
> > > > > > > > > Thank you!
> > > > > > > > >
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
> > > > > > > > > Contractor,
> > > > > > > > > Code
> > > > > > > > 7501.1
> > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <URL:
> > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > I used the buildscript. It should build all of the
> > > > > > > > > > external
> > > > > > > > > > libraries,
> > > > > > > > so
> > > > > > > > > > I believe everything was built with the same
> > > > > > > > > > compiler.
> > > > > > > > > >
> > > > > > > > > > Greg
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > > > MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > Hi Greg. Our developer suspects it may be a
> > > > > > > > > > mismatched
> > > > > > > > compiler/library
> > > > > > > > > > version. Was BUFRLIB installed with the same
> > > > > > > > > > compiler
> > > > > > > > > > as
> > > > > > > > > > MET?
> > > > > > > > > > Also,
> > > > > > > > > what
> > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > >
> > > > > > > > > > Thanks,
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > wrote:
> > > > > > > > > >
> > > > > > > > > > > Hi Greg. I am checking in with another
developer
> > > > > > > > > > > regarding
> > > > > > > > > > > the
> > > > > > > > > > > error
> > > > > > > > > you
> > > > > > > > > > > experienced. Thank you for your patience.
> > > > > > > > > > >
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr.
Gregory,
> > > > > > > > > > > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >
> > > > > > > > > > >>
> > > > > > > > > > >> <URL:
> > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >> >
> > > > > > > > > > >>
> > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > >>
> > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > > > > >> Copyright (C) 2010 Free Software Foundation,
Inc.
> > > > > > > > > > >> This is free software; see the source for
copying
> > > > > > > > > > >> conditions.
> > > > > > > > > > >> There
> > > > > > > > > is
> > > > > > > > > > NO
> > > > > > > > > > >> warranty; not even for MERCHANTABILITY or
FITNESS
> > > > > > > > > > >> FOR
> > > > > > > > > > >> A
> > > > > > > > > > >> PARTICULAR
> > > > > > > > > > >> PURPOSE.
> > > > > > > > > > >>
> > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > >>
> > > > > > > > > > >> Not all of the tests passed, please see
> > > > > > > > > > >> attachment.
> > > > > > > > > > >>
> > > > > > > > > > >> Greg
> > > > > > > > > > >>
> > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > >> regarding
> > > > > > > > > > >> MET
> > > > > > > > > > >> 8.1
> > > > > > > > > > >> Julie
> > > > > > > > > > >> Prestopnik
> > > > > > > > > > >>
> > > > > > > > > > >> Thank you for letting me know. I will proceed
> > > > > > > > > > >> with
> > > > > > > > > > >> trying
> > > > > > > > > > >> to
> > > > > > > > > reproduce
> > > > > > > > > > >> the
> > > > > > > > > > >> problem using the gcc-6.3.0. I will follow up
> > > > > > > > > > >> once
> > > > > > > > > > >> I
> > > > > > > > > > >> have
> > > > > > > > > > >> more
> > > > > > > > > > >> information.
> > > > > > > > > > >>
> > > > > > > > > > >> Julie
> > > > > > > > > > >>
> > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr.
Gregory,
> > > > > > > > > > >> Contractor,
> > > > > > > > > > >> Code
> > > > > > > > > > 7501.1
> > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >>
> > > > > > > > > > >> >
> > > > > > > > > > >> > <URL:
> > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >> > >
> > > > > > > > > > >> >
> > > > > > > > > > >> > When I compiled MET 8.0 the last time, it
> > > > > > > > > > >> > worked.
> > > > > > > > > > >> > I
> > > > > > > > > > >> > was
> > > > > > > > > > >> > also
> > > > > > > > > > >> > able
> > > > > > > > to
> > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > >> >
> > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > >> > Password:
> > > > > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
> > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > >> >
> > > > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > > > > >> >
> > > > > > > > > > >> > You are accessing a U.S. Government (USG)
> > > > > > > > > > >> > Information
> > > > > > > > > > >> > System
> > > > > > > > > > >> > (IS)
> > > > > > > > > that
> > > > > > > > > > >> is
> > > > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > > > >> > By using this IS (which includes any device
> > > > > > > > > > >> > attached
> > > > > > > > > > >> > to
> > > > > > > > > > >> > this
> > > > > > > > > > >> > IS),
> > > > > > > > > you
> > > > > > > > > > >> > consent to the following conditions:
> > > > > > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > > > > > >> > communications
> > > > > > > > > > >> > on
> > > > > > > > > > >> > this
> > > > > > > > IS
> > > > > > > > > > for
> > > > > > > > > > >> > purposes including, but not limited to,
> > > > > > > > > > >> > penetration testing, COMSEC monitoring,
network
> > > > > > > > > > >> > operations
> > > > > > > > > > >> > and
> > > > > > > > > > defense,
> > > > > > > > > > >> > personnel misconduct (PM), law enforcement
(LE),
> > > > > > > > > > >> > and counterintelligence (CI) investigations.
> > > > > > > > > > >> > -At any time, the USG may inspect and seize
data
> > > > > > > > > > >> > stored
> > > > > > > > > > >> > on
> > > > > > > > > > >> > this
> > > > > > > > IS.
> > > > > > > > > > >> > -Communications using, or data stored on,
this
> > > > > > > > > > >> > IS
> > > > > > > > > > >> > are
> > > > > > > > > > >> > not
> > > > > > > > > > >> > private,
> > > > > > > > > are
> > > > > > > > > > >> > subject to routine monitoring, interception,
> > > > > > > > > > >> > and search, and may be disclosed or used for
any
> > > > > > > > > > >> > USG-
> > > > > > > > > > >> > authorized
> > > > > > > > > > purpose.
> > > > > > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > > > > > >> > authentication
> > > > > > > > > > >> > and
> > > > > > > > access
> > > > > > > > > > >> > controls) to protect USG interests -- not for
> > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > >> > -Notwithstanding the above, using this IS
does
> > > > > > > > > > >> > not
> > > > > > > > > > >> > constitute
> > > > > > > > > consent
> > > > > > > > > > to
> > > > > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > > > > >> > monitoring of the content of privileged
> > > > > > > > > > >> > communications,
> > > > > > > > > > >> > or
> > > > > > > > > > >> > work
> > > > > > > > > > product,
> > > > > > > > > > >> > related to personal representation or
> > > > > > > > > > >> > services by attorneys, psychotherapists, or
> > > > > > > > > > >> > clergy,
> > > > > > > > > > >> > and
> > > > > > > > > > >> > their
> > > > > > > > > > >> assistants.
> > > > > > > > > > >> > Such communications and work product are
> > > > > > > > > > >> > private and confidential. See User Agreement
for
> > > > > > > > > > >> > details.
> > > > > > > > > > >> >
> > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > >> >
> > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > >> > regarding
> > > > > > > > > > >> > MET
> > > > > > > > > > >> > 8.1
> > > > > > > > Julie
> > > > > > > > > > >> > Prestopnik
> > > > > > > > > > >> >
> > > > > > > > > > >> > Hi Gregory. I have not tested with version
> > > > > > > > > > >> > 6.3.0
> > > > > > > > > > >> > of
> > > > > > > > > > >> > the
> > > > > > > > > > >> > gcc
> > > > > > > > > compiler,
> > > > > > > > > > >> but
> > > > > > > > > > >> > rather only with lower versions (specifically
> > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > >> > We
> > > > > > > > > > >> > would,
> > > > > > > > of
> > > > > > > > > > >> course,
> > > > > > > > > > >> > want our code to work with higher versions as
> > > > > > > > > > >> > well.
> > > > > > > > > > >> > I
> > > > > > > > > > >> > have
> > > > > > > > > > >> > not
> > > > > > > > yet
> > > > > > > > > > had
> > > > > > > > > > >> an
> > > > > > > > > > >> > opportunity to test with a higher version
like
> > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > >> > Do
> > > > > > > > > > >> > you have
> > > > > > > > > the
> > > > > > > > > > >> > ability to compile MET using a lesser version
of
> > > > > > > > > > >> > the
> > > > > > > > > > >> > gcc
> > > > > > > > > > >> > compiler
> > > > > > > > to
> > > > > > > > > > >> see if
> > > > > > > > > > >> > that clears up the issues you are
experiencing?
> > > > > > > > > > >> >
> > > > > > > > > > >> > Julie
> > > > > > > > > > >> >
> > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr.
> > > > > > > > > > >> > Gregory,
> > > > > > > > > > >> > Contractor,
> > > > > > > > Code
> > > > > > > > > > >> 7501.1
> > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >> >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > <URL:
> > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Greg
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > >> > > 7501.1
> > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > >> > > regarding
> > > > > > > > > > >> > > MET
> > > > > > > > > > >> > > 8.1
> > > > > > > > > Julie
> > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Hi Greg. Thank you for passing along your
> > > > > > > > > > >> > > config.log
> > > > > > > > > > >> > > file. I
> > > > > > > > > see a
> > > > > > > > > > >> > couple
> > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Based on those errors, it looks like you
may
> > > > > > > > > > >> > > not
> > > > > > > > > > >> > > have
> > > > > > > > > > >> > > flex
> > > > > > > > > > >> > > and
> > > > > > > > > bison
> > > > > > > > > > >> > > installed. Please install those and try
> > > > > > > > > > >> > > running
> > > > > > > > > > >> > > configure
> > > > > > > > again.
> > > > > > > > > > >> Please
> > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Also, I just wanted to address one other
> > > > > > > > > > >> > > thing.
> > > > > > > > > > >> > > In
> > > > > > > > > > >> > > your
> > > > > > > > original
> > > > > > > > > > >> email
> > > > > > > > > > >> > you
> > > > > > > > > > >> > > listed the following as part of your "MET
> > > > > > > > > > >> > > Configuration
> > > > > > > > settings":
> > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread
> > > > > > > > > > >> > > -ldl
> > > > > > > > > > >> > > -lutil
> > > > > > > > > > >> > > -lm
> > > > > > > > > -Xlinker
> > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > However, in your config.log file it looks
like
> > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > >> actually
> > > > > > > > > > >> > > set to be "-L/software/depot/anaconda-
> > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > -lpthread
> > > > > > > > > > >> > -ldl
> > > > > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which
is
> > > > > > > > > > >> > > correct
> > > > > > > > > > >> > > because
> > > > > > > > you
> > > > > > > > > > >> need
> > > > > > > > > > >> > to
> > > > > > > > > > >> > > have that -L part in there, so I just want
to
> > > > > > > > > > >> > > ensure
> > > > > > > > > > >> > > that
> > > > > > > > > > >> > > will
> > > > > > > > > stay
> > > > > > > > > > >> there
> > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Thanks,
> > > > > > > > > > >> > > Julie
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr.
> > > > > > > > > > >> > > Gregory,
> > > > > > > > > > >> > > Contractor,
> > > > > > > > > Code
> > > > > > > > > > >> > 7501.1
> > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > <URL:
> > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
configure.log
> > > > > > > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > >> > > > regarding
> > > > > > > > > > >> > > > MET
> > > > > > > > > > >> > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > I'll go ahead and assign this ticket to
> > > > > > > > > > >> > > > Julie,
> > > > > > > > > > >> > > > and
> > > > > > > > > > >> > > > she
> > > > > > > > > > >> > > > should
> > > > > > > > be
> > > > > > > > > > >> > writing
> > > > > > > > > > >> > > > you back in the next couple of days.
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > >> > > > file you
> > > > > > > > > > >> > generated
> > > > > > > > > > >> > > as
> > > > > > > > > > >> > > > well as the "config.log" file from that
same
> > > > > > > > > > >> > > > directory.
> > > > > > > > > > >> > > > So
> > > > > > > > > please
> > > > > > > > > > >> send
> > > > > > > > > > >> > > > those along when you get a chance.
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > >> > > > John
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr.
> > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > > >> > > 7501.1
> > > > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091
> > > > > > > > > > >> > > > > was
> > > > > > > > > > >> > > > > acted
> > > > > > > > > > >> > > > > upon.
> > > > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
> > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > >> > > > > Requestors:
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > > Julie helped me compiled 8.0 using gcc
> > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > >> > > > > and
> > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > 2.4.0.
> > > > > > > > > > >> The
> > > > > > > > > > >> > > user
> > > > > > > > > > >> > > > > asked for 8.1. I took notes last time,
but
> > > > > > > > > > >> > > > > running
> > > > > > > > > > >> > > > > into
> > > > > > > > > > problems:
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > >> > > > > export
MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > >> > > > > export
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> >
> > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > >> > > > > export
> > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export
> > > > > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3
-Wall
> > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> >
> > > > > > > > > > >>
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export
> > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > >> > > > > export
> > > > > > > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7
-lpthread
> > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > >> > > > > -lm
> > > > > > > > > > >> -Xlinker
> > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export MET_SUBDIR=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > > > > >> > > > > ./configure
--prefix=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > >> --enable-grib2
> > > > > > > > > > >> > > > > --enable-modis --enable-mode_graphics
> > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > >> > > configure.log
> > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > >> > > > > configure returned with non-zero (127)
> > > > > > > > > > >> > > > > status
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> >
> > > > > > > > > > >> >
> > > > > > > > > > >> >
> > > > > > > > > > >> >
> > > > > > > > > > >>
> > > > > > > > > > >>
> > > > > > > > > > >>
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Wed May 22 11:26:02 2019
Attached find my make.log and make_test.log
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Wednesday, May 22, 2019 7:11 AM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
The runntime NetCDF library is decided by LD_LIBRARY_PATH.
LD_LIBRARY_PATH can be changed by module loading or by user
configurations. If the problem happens with NetCDF, would you ask them
to run this command and check which NetCDF library is loaded?
ldd bin/<MET_tool_name> | grep netcdf
ldd bin/<MET_tool_name> | grep hdf
for example,
ldd bin/pb2nc | grep netcdf
ldd bin/pb2nc | grep hdf
ldd bin/grid_stat | grep netcdf
ldd bin/grid_stat | grep hdf
Note: There are dependency between NetCDF4 and HDF5.
Cheers,
Howard
On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> OK, we have several people who are using the 8.1 version I built. We
> use a central location:
>
> /software/depot
>
> To house all of our software. To be clear, the first build went OK,
it
> was 'make test' that failed. So the users are using that, but
someone
> ran into an error today and they asked me about NetCDF. I think it
was
> their setup. The same build was used on two different machines, one
> had an error, one didn't.
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Tuesday, May 21, 2019 5:50 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> No, external libraries are not changed.
>
> Personally, I'm using newer NetCDF library (4.6.x instead of
4.4.1.1).
>
> Cheers,
> Howard
>
> On Tue May 21 18:39:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > No, that is not what I am asking. Every time I build, I use your
> > script which builds everything.
> >
> > What I am asking is, did the versions of the external libraries
> > change?
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Tuesday, May 21, 2019 5:34 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Yes, the third party libraries should be compiled with newer
version.
> >
> > The compile error with gnu 7.3.0 happens with gnu 6.3.0, too.
> > The fix/patch is not ready officially. One file has to be
corrected
> > to support newer version gnu compiler. Would you replace
data_line.cc
> > with attached file or modify it manually?
> >
> > Filename:
> > met-8.1/src/basic/vx_util/data_line.cc
> >
> > line 202:
> >
> > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> >
> > line 218:
> >
> > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> >
> > Cheers,
> > Howard
> >
> > On Tue May 21 18:21:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > Did new external libraries need to be built with 8.1?
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, May 16, 2019 4:01 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > No new tools but many enhancements.
> > >
> > > It's available at
> > > https://dtcenter.org/community-code/model-evaluation-tools-
met/met-
> > > version-8-1
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Maybe you can answer one question while I try to reinstall
> > > > everything. What features does 8.1 provide over 8.0?
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > Prestopnik
> > > >
> > > > Would try this command at /software/depot/met-8.1/met-
8.1/scripts
> > > > directory?
> > > >
> > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > echo $LD_LIBRARY_PATH
> > > >
> > > > 2. Save LD_LIBRARY_PATH
> > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > OR
> > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > >
> > > > 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-
2.4.0/lib
> > > >
> > > > 4. Check which libgfortran.so at /software/depot/met-8.1/met-
> > > > 8.1/scripts directory.
> > > >
> > > > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran OR ldd
> > > > ../bin/pb2nc | grep libgfortran
> > > >
> > > > 5. Check libgfortran version (should be libgfortran.so.3, not
> > > > so.4)
> > > >
> > > > 6. Run the failed command manually at /software/depot/met-
> > > > 8.1/met-
> > > > 8.1/scripts directory if libgfortran.so.3.
> > > >
> > > > ../src/tools/other/pb2nc/pb2nc \
> > > >
> > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > \
> > > > ../out/pb2nc/sample_pb.nc \
> > > > config/PB2NCConfig_G212 \
> > > > -v 2
> > > >
> > > > 7. Change back LD_LIBRARY_PATH
> > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > OR
> > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > >
> > > > On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-grib2-
> > > > > support
> > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > (0x0000003453800000)
> > > > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > > > > libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> > > > > libpng16.so.16 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> > > > > libz.so.1 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libz.so.1
> > > > > (0x00007f7f19af4000)
> > > > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
(0x00007f7f198a6000)
> > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> > > > > libgsl.so.19 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libgslcblas.so.0 (0x00007f7f18eeb000)
> > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libjpeg.so.9
> > > > > (0x00007f7f18c99000)
> > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > 2.4.0/lib/libstdc++.so.6
> > > > > (0x00007f7f18b58000)
> > > > > libgcc_s.so.1 =>
> > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > (0x00007f7f18b42000)
> > > > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libhdf5_hl.so.10 (0x00007f7f18922000)
> > > > > libhdf5.so.10 => /software/depot/met-
> > > > > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > > > > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > > > > [ramos at lorenz bin]$
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > MET is expecting "libpython2.7.so" to enable python support.
> > > > >
> > > > > A log message shows the python was not enabled. Is python
> > > > > supporting is critical?
> > > > >
> > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > > > --enable-lidar2nc > configure.log 2>&1
> > > > >
> > > > > If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> > > > > 1. Make sure python is not enabled
> > > > > no "--enable-python" option for ./configure
> > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
> > > > > LD_LIBRARY_PATH at the build time and runtime both.
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > > On Thu May 16 14:17:40 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > >
> > > > > > ramos at leo1:~> gcc --version
> > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright (C) 2017
Free
> > > > > > Software Foundation, Inc.
> > > > > > This is free software; see the source for copying
conditions.
> > > > > > There
> > > > > > is NO
> > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > PARTICULAR PURPOSE.
> > > > > >
> > > > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC) 7.3.0
> > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free Software
> > > > > > Foundation, Inc.
> > > > > > This is free software; see the source for copying
conditions.
> > > > > > There
> > > > > > is NO
> > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > PARTICULAR PURPOSE.
> > > > > >
> > > > > > ramos at leo1:~>
> > > > > >
> > > > > > We don't have that version on our Red Hat systems. Met 8.0
> > > > > > worked on RH, but 8.1 failed on the 'make test'. The user
> > > > > > says
> > > > > > she is fine with the executables so far. I will have to
build
> > > > > > a
> > > > > > gfortran 7.x version.
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Hello,
> > > > > >
> > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > >
> > > > > > The problem was caused by the path for python library
> > > > > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4
exists
> > > > > > there
> > > > > > from the ldd output. It was used on building MET. MET was
> > > > > > compiled
> > > > > > with gcc 4.4.7 which supports only libgfortran.so.3, and
> > > > > > linked
> > > > > > with
> > > > > > libgfortran.so.4 because of MET_PYTHON_LD configuration.
Some
> > > > > > libraries do not support the backward compatibility.
> > > > > > libgfortran.so
> > > > > > is
> > > > > > one of them. In this case, the compiler version and
library
> > > > > > version
> > > > > > should match.
> > > > > >
> > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
> > > > > > 8.1/bin/pb2nc
> > > > > > |grep
> > > > > > gfortran
> > > > > > libgfortran.so.4 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > >
> > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-2.4.0/lib\
> > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\
-export-
> > > > > > dynamic
> > > > > >
> > > > > > The solution is compiling third party libraries and MET
with
> > > > > > version
> > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > > > > libgfortran.so.5,
> > > > > > So the same problem will happen if MET is built with
> > > > > > gcc/gfortran
> > > > > > 6.x
> > > > > > or gcc/gfortran 8.x.
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > > On Mon May 13 18:36:04 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > Attached is the config.log for NetCDf it shows
/usr/bin/gcc
> > > > > > >
> > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat
> > > > > > > version.
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding MET
> > > > > > > 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Thank you. Unfortunately, that does not tell me if the
> > > > > > > libraries
> > > > > > > and
> > > > > > > the
> > > > > > > MET code were built with the same version of the
compiler.
> > > > > > > I
> > > > > > > also
> > > > > > > do
> > > > > > > not
> > > > > > > see bufrlib in that list.
> > > > > > >
> > > > > > > Can you please tell me - were the libraries and the MET
> > > > > > > code
> > > > > > > built
> > > > > > > with the
> > > > > > > same version of the compiler? I'm checking to see if,
for
> > > > > > > example,
> > > > > > > the
> > > > > > > libraries were built with gcc-6.3.0 but the MET code was
> > > > > > > build
> > > > > > > with
> > > > > > > gcc-4.4.7.
> > > > > > >
> > > > > > > Thanks!
> > > > > > >
> > > > > > > Julie
> > > > > > >
> > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
> > > > > > > Contractor,
> > > > > > > Code
> > > > > > > 7501.1
> > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > <URL:
> > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >
> > > > > > > >
> > > > > > > > You can see I am using those libraries for MET 8.1:
> > > > > > > >
> > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > /software/depot/anaconda-2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > (0x00002ab75e63b000)
> > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > (0x00002ab75e858000)
> > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > libpng16.so.16 =>
> > > > > > > > /software/depot/met-
8.1/external_libs/lib/libpng16.so.16
> > > > > > > > (0x00002ab75ec60000)
> > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > (0x00002ab75ee92000)
> > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > (0x00002ab75f32f000)
> > > > > > > > libnetcdf.so.11 =>
> > > > > > > > /software/depot/met-
8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > (0x00002ab75f57c000)
> > > > > > > > libgsl.so.19 =>
> > > > > > > > /software/depot/met-8.1/external_libs/lib/libgsl.so.19
> > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > libgslcblas.so.0 =>
> > > > > > > > /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > (0x00002ab75ff37000)
> > > > > > > > libstdc++.so.6 =>
> > > > > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > > > > (0x00002ab760189000)
> > > > > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > (0x00002ab7602cb000)
> > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > (0x00002ab7602e0000)
> > > > > > > > /lib64/ld-linux-x86-64.so.2
(0x0000559353f4f000)
> > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > (0x00002ab760675000)
> > > > > > > > libhdf5.so.10 =>
> > > > > > > > /software/depot/met-
8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > (0x00002ab760894000)
> > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > (0x00002ab760d6f000)
> > > > > > > > [root at maury2 bin]#
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > 8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Thank you, Greg. Can you please tell me - were the
> > > > > > > > libraries
> > > > > > > > and
> > > > > > > > the
> > > > > > > > MET
> > > > > > > > code built with the same version of the compiler. I'm
> > > > > > > > checking
> > > > > > > > to
> > > > > > > > see if,
> > > > > > > > for example, the libraries were built with gcc-6.3.0
but
> > > > > > > > the
> > > > > > > > MET
> > > > > > > > code
> > > > > > > > was
> > > > > > > > build with gcc-4.4.7.
> > > > > > > >
> > > > > > > > It sounds like we need the libraries and the MET code
to
> > > > > > > > be
> > > > > > > > built
> > > > > > > > with the
> > > > > > > > same version of the compiler, in this case.
> > > > > > > >
> > > > > > > > Thanks for any information you can provide.
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
> > > > > > > > Contractor,
> > > > > > > > Code
> > > > > > > > 7501.1
> > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > <URL:
> > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > > Find the logs attached.
> > > > > > > > >
> > > > > > > > > Greg
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
> > > > > > > > > MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Could you please run the following:
> > > > > > > > >
> > > > > > > > > which pb2nc
> > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > >
> > > > > > > > > and send me the output?
> > > > > > > > >
> > > > > > > > > Please also send your config.log and make.log file.
> > > > > > > > >
> > > > > > > > > Thank you!
> > > > > > > > >
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr. Gregory,
> > > > > > > > > Contractor,
> > > > > > > > > Code
> > > > > > > > 7501.1
> > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <URL:
> > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > I used the buildscript. It should build all of the
> > > > > > > > > > external
> > > > > > > > > > libraries,
> > > > > > > > so
> > > > > > > > > > I believe everything was built with the same
> > > > > > > > > > compiler.
> > > > > > > > > >
> > > > > > > > > > Greg
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > > > MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > Hi Greg. Our developer suspects it may be a
> > > > > > > > > > mismatched
> > > > > > > > compiler/library
> > > > > > > > > > version. Was BUFRLIB installed with the same
> > > > > > > > > > compiler
> > > > > > > > > > as
> > > > > > > > > > MET?
> > > > > > > > > > Also,
> > > > > > > > > what
> > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > >
> > > > > > > > > > Thanks,
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie Prestopnik
> > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > wrote:
> > > > > > > > > >
> > > > > > > > > > > Hi Greg. I am checking in with another
developer
> > > > > > > > > > > regarding
> > > > > > > > > > > the
> > > > > > > > > > > error
> > > > > > > > > you
> > > > > > > > > > > experienced. Thank you for your patience.
> > > > > > > > > > >
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr.
Gregory,
> > > > > > > > > > > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >
> > > > > > > > > > >>
> > > > > > > > > > >> <URL:
> > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >> >
> > > > > > > > > > >>
> > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > >>
> > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > > > > >> Copyright (C) 2010 Free Software Foundation,
Inc.
> > > > > > > > > > >> This is free software; see the source for
copying
> > > > > > > > > > >> conditions.
> > > > > > > > > > >> There
> > > > > > > > > is
> > > > > > > > > > NO
> > > > > > > > > > >> warranty; not even for MERCHANTABILITY or
FITNESS
> > > > > > > > > > >> FOR
> > > > > > > > > > >> A
> > > > > > > > > > >> PARTICULAR
> > > > > > > > > > >> PURPOSE.
> > > > > > > > > > >>
> > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > >>
> > > > > > > > > > >> Not all of the tests passed, please see
> > > > > > > > > > >> attachment.
> > > > > > > > > > >>
> > > > > > > > > > >> Greg
> > > > > > > > > > >>
> > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > >> regarding
> > > > > > > > > > >> MET
> > > > > > > > > > >> 8.1
> > > > > > > > > > >> Julie
> > > > > > > > > > >> Prestopnik
> > > > > > > > > > >>
> > > > > > > > > > >> Thank you for letting me know. I will proceed
> > > > > > > > > > >> with
> > > > > > > > > > >> trying
> > > > > > > > > > >> to
> > > > > > > > > reproduce
> > > > > > > > > > >> the
> > > > > > > > > > >> problem using the gcc-6.3.0. I will follow up
> > > > > > > > > > >> once
> > > > > > > > > > >> I
> > > > > > > > > > >> have
> > > > > > > > > > >> more
> > > > > > > > > > >> information.
> > > > > > > > > > >>
> > > > > > > > > > >> Julie
> > > > > > > > > > >>
> > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr.
Gregory,
> > > > > > > > > > >> Contractor,
> > > > > > > > > > >> Code
> > > > > > > > > > 7501.1
> > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >>
> > > > > > > > > > >> >
> > > > > > > > > > >> > <URL:
> > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >> > >
> > > > > > > > > > >> >
> > > > > > > > > > >> > When I compiled MET 8.0 the last time, it
> > > > > > > > > > >> > worked.
> > > > > > > > > > >> > I
> > > > > > > > > > >> > was
> > > > > > > > > > >> > also
> > > > > > > > > > >> > able
> > > > > > > > to
> > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > >> >
> > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > >> > Password:
> > > > > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
> > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > >> >
> > > > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > > > > >> >
> > > > > > > > > > >> > You are accessing a U.S. Government (USG)
> > > > > > > > > > >> > Information
> > > > > > > > > > >> > System
> > > > > > > > > > >> > (IS)
> > > > > > > > > that
> > > > > > > > > > >> is
> > > > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > > > >> > By using this IS (which includes any device
> > > > > > > > > > >> > attached
> > > > > > > > > > >> > to
> > > > > > > > > > >> > this
> > > > > > > > > > >> > IS),
> > > > > > > > > you
> > > > > > > > > > >> > consent to the following conditions:
> > > > > > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > > > > > >> > communications
> > > > > > > > > > >> > on
> > > > > > > > > > >> > this
> > > > > > > > IS
> > > > > > > > > > for
> > > > > > > > > > >> > purposes including, but not limited to,
> > > > > > > > > > >> > penetration testing, COMSEC monitoring,
network
> > > > > > > > > > >> > operations
> > > > > > > > > > >> > and
> > > > > > > > > > defense,
> > > > > > > > > > >> > personnel misconduct (PM), law enforcement
(LE),
> > > > > > > > > > >> > and counterintelligence (CI) investigations.
> > > > > > > > > > >> > -At any time, the USG may inspect and seize
data
> > > > > > > > > > >> > stored
> > > > > > > > > > >> > on
> > > > > > > > > > >> > this
> > > > > > > > IS.
> > > > > > > > > > >> > -Communications using, or data stored on,
this
> > > > > > > > > > >> > IS
> > > > > > > > > > >> > are
> > > > > > > > > > >> > not
> > > > > > > > > > >> > private,
> > > > > > > > > are
> > > > > > > > > > >> > subject to routine monitoring, interception,
> > > > > > > > > > >> > and search, and may be disclosed or used for
any
> > > > > > > > > > >> > USG-
> > > > > > > > > > >> > authorized
> > > > > > > > > > purpose.
> > > > > > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > > > > > >> > authentication
> > > > > > > > > > >> > and
> > > > > > > > access
> > > > > > > > > > >> > controls) to protect USG interests -- not for
> > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > >> > -Notwithstanding the above, using this IS
does
> > > > > > > > > > >> > not
> > > > > > > > > > >> > constitute
> > > > > > > > > consent
> > > > > > > > > > to
> > > > > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > > > > >> > monitoring of the content of privileged
> > > > > > > > > > >> > communications,
> > > > > > > > > > >> > or
> > > > > > > > > > >> > work
> > > > > > > > > > product,
> > > > > > > > > > >> > related to personal representation or
> > > > > > > > > > >> > services by attorneys, psychotherapists, or
> > > > > > > > > > >> > clergy,
> > > > > > > > > > >> > and
> > > > > > > > > > >> > their
> > > > > > > > > > >> assistants.
> > > > > > > > > > >> > Such communications and work product are
> > > > > > > > > > >> > private and confidential. See User Agreement
for
> > > > > > > > > > >> > details.
> > > > > > > > > > >> >
> > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > >> >
> > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > >> > regarding
> > > > > > > > > > >> > MET
> > > > > > > > > > >> > 8.1
> > > > > > > > Julie
> > > > > > > > > > >> > Prestopnik
> > > > > > > > > > >> >
> > > > > > > > > > >> > Hi Gregory. I have not tested with version
> > > > > > > > > > >> > 6.3.0
> > > > > > > > > > >> > of
> > > > > > > > > > >> > the
> > > > > > > > > > >> > gcc
> > > > > > > > > compiler,
> > > > > > > > > > >> but
> > > > > > > > > > >> > rather only with lower versions (specifically
> > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > >> > We
> > > > > > > > > > >> > would,
> > > > > > > > of
> > > > > > > > > > >> course,
> > > > > > > > > > >> > want our code to work with higher versions as
> > > > > > > > > > >> > well.
> > > > > > > > > > >> > I
> > > > > > > > > > >> > have
> > > > > > > > > > >> > not
> > > > > > > > yet
> > > > > > > > > > had
> > > > > > > > > > >> an
> > > > > > > > > > >> > opportunity to test with a higher version
like
> > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > >> > Do
> > > > > > > > > > >> > you have
> > > > > > > > > the
> > > > > > > > > > >> > ability to compile MET using a lesser version
of
> > > > > > > > > > >> > the
> > > > > > > > > > >> > gcc
> > > > > > > > > > >> > compiler
> > > > > > > > to
> > > > > > > > > > >> see if
> > > > > > > > > > >> > that clears up the issues you are
experiencing?
> > > > > > > > > > >> >
> > > > > > > > > > >> > Julie
> > > > > > > > > > >> >
> > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr.
> > > > > > > > > > >> > Gregory,
> > > > > > > > > > >> > Contractor,
> > > > > > > > Code
> > > > > > > > > > >> 7501.1
> > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >> >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > <URL:
> > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Greg
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > >> > > 7501.1
> > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > >> > > regarding
> > > > > > > > > > >> > > MET
> > > > > > > > > > >> > > 8.1
> > > > > > > > > Julie
> > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Hi Greg. Thank you for passing along your
> > > > > > > > > > >> > > config.log
> > > > > > > > > > >> > > file. I
> > > > > > > > > see a
> > > > > > > > > > >> > couple
> > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Based on those errors, it looks like you
may
> > > > > > > > > > >> > > not
> > > > > > > > > > >> > > have
> > > > > > > > > > >> > > flex
> > > > > > > > > > >> > > and
> > > > > > > > > bison
> > > > > > > > > > >> > > installed. Please install those and try
> > > > > > > > > > >> > > running
> > > > > > > > > > >> > > configure
> > > > > > > > again.
> > > > > > > > > > >> Please
> > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Also, I just wanted to address one other
> > > > > > > > > > >> > > thing.
> > > > > > > > > > >> > > In
> > > > > > > > > > >> > > your
> > > > > > > > original
> > > > > > > > > > >> email
> > > > > > > > > > >> > you
> > > > > > > > > > >> > > listed the following as part of your "MET
> > > > > > > > > > >> > > Configuration
> > > > > > > > settings":
> > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7 -lpthread
> > > > > > > > > > >> > > -ldl
> > > > > > > > > > >> > > -lutil
> > > > > > > > > > >> > > -lm
> > > > > > > > > -Xlinker
> > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > However, in your config.log file it looks
like
> > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > >> actually
> > > > > > > > > > >> > > set to be "-L/software/depot/anaconda-
> > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > -lpthread
> > > > > > > > > > >> > -ldl
> > > > > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic", which
is
> > > > > > > > > > >> > > correct
> > > > > > > > > > >> > > because
> > > > > > > > you
> > > > > > > > > > >> need
> > > > > > > > > > >> > to
> > > > > > > > > > >> > > have that -L part in there, so I just want
to
> > > > > > > > > > >> > > ensure
> > > > > > > > > > >> > > that
> > > > > > > > > > >> > > will
> > > > > > > > > stay
> > > > > > > > > > >> there
> > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > Thanks,
> > > > > > > > > > >> > > Julie
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr.
> > > > > > > > > > >> > > Gregory,
> > > > > > > > > > >> > > Contractor,
> > > > > > > > > Code
> > > > > > > > > > >> > 7501.1
> > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >> > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > <URL:
> > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
configure.log
> > > > > > > > > > >> > > > -bash: [ramos at predict: command not found
> > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > >> > > > regarding
> > > > > > > > > > >> > > > MET
> > > > > > > > > > >> > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > I'll go ahead and assign this ticket to
> > > > > > > > > > >> > > > Julie,
> > > > > > > > > > >> > > > and
> > > > > > > > > > >> > > > she
> > > > > > > > > > >> > > > should
> > > > > > > > be
> > > > > > > > > > >> > writing
> > > > > > > > > > >> > > > you back in the next couple of days.
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > >> > > > file you
> > > > > > > > > > >> > generated
> > > > > > > > > > >> > > as
> > > > > > > > > > >> > > > well as the "config.log" file from that
same
> > > > > > > > > > >> > > > directory.
> > > > > > > > > > >> > > > So
> > > > > > > > > please
> > > > > > > > > > >> send
> > > > > > > > > > >> > > > those along when you get a chance.
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > >> > > > John
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos, Mr.
> > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > > >> > > 7501.1
> > > > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request 90091
> > > > > > > > > > >> > > > > was
> > > > > > > > > > >> > > > > acted
> > > > > > > > > > >> > > > > upon.
> > > > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
> > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > >> > > > > Requestors:
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > > Julie helped me compiled 8.0 using gcc
> > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > >> > > > > and
> > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > 2.4.0.
> > > > > > > > > > >> The
> > > > > > > > > > >> > > user
> > > > > > > > > > >> > > > > asked for 8.1. I took notes last time,
but
> > > > > > > > > > >> > > > > running
> > > > > > > > > > >> > > > > into
> > > > > > > > > > problems:
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > >> > > > > export
MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > >> > > > > export
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> >
> > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > >> > > > > export
> > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export
> > > > > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3
-Wall
> > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> >
> > > > > > > > > > >>
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > >> > > > > export MET_HDFEOS=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export MET_NETCDF=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export
> > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > >> > > > > export
> > > > > > > > MET_CAIROLIB=/software/depot/met-8.1/external_libs/lib
> > > > > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7
-lpthread
> > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > >> > > > > -lm
> > > > > > > > > > >> -Xlinker
> > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > >> > > > > export MET_GRIB2C=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > >> > > > > export MET_SUBDIR=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > >> > > > > export MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > > > > >> > > > > ./configure
--prefix=/software/depot/met-
> > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > >> --enable-grib2
> > > > > > > > > > >> > > > > --enable-modis --enable-mode_graphics
> > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > >> > > configure.log
> > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > >> > > > > configure returned with non-zero (127)
> > > > > > > > > > >> > > > > status
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> > >
> > > > > > > > > > >> >
> > > > > > > > > > >> >
> > > > > > > > > > >> >
> > > > > > > > > > >> >
> > > > > > > > > > >>
> > > > > > > > > > >>
> > > > > > > > > > >>
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Howard Soh
Time: Wed May 22 12:33:50 2019
Would you run the same command manually and sen me the output?
cd /software/depot/met-8.1a/met-8.1a/scripts
../src/tools/other/ascii2nc/ascii2nc
../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v 2
(NOTE: the same dcommand but one line instead of multiple lines)
If the command works, would you send me Makefile at the current
directory.
If not working, please run following commands and send me
ascii2nc_test.log.
../src/tools/other/ascii2nc/ascii2nc
../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v 5
-log ascii2nc_test.log
ldd ../src/tools/other/ascii2nc/ascii2nc >> ascii2nc_test.log
Cheers,
Howard
On Wed May 22 11:26:02 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> Attached find my make.log and make_test.log
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Wednesday, May 22, 2019 7:11 AM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> The runntime NetCDF library is decided by LD_LIBRARY_PATH.
> LD_LIBRARY_PATH can be changed by module loading or by user
> configurations. If the problem happens with NetCDF, would you ask
them
> to run this command and check which NetCDF library is loaded?
>
> ldd bin/<MET_tool_name> | grep netcdf
> ldd bin/<MET_tool_name> | grep hdf
>
> for example,
> ldd bin/pb2nc | grep netcdf
> ldd bin/pb2nc | grep hdf
> ldd bin/grid_stat | grep netcdf
> ldd bin/grid_stat | grep hdf
>
> Note: There are dependency between NetCDF4 and HDF5.
>
> Cheers,
> Howard
>
> On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > OK, we have several people who are using the 8.1 version I built.
We
> > use a central location:
> >
> > /software/depot
> >
> > To house all of our software. To be clear, the first build went
OK,
> > it
> > was 'make test' that failed. So the users are using that, but
someone
> > ran into an error today and they asked me about NetCDF. I think it
> > was
> > their setup. The same build was used on two different machines,
one
> > had an error, one didn't.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Tuesday, May 21, 2019 5:50 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > No, external libraries are not changed.
> >
> > Personally, I'm using newer NetCDF library (4.6.x instead of
> > 4.4.1.1).
> >
> > Cheers,
> > Howard
> >
> > On Tue May 21 18:39:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > No, that is not what I am asking. Every time I build, I use your
> > > script which builds everything.
> > >
> > > What I am asking is, did the versions of the external libraries
> > > change?
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Tuesday, May 21, 2019 5:34 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > Yes, the third party libraries should be compiled with newer
> > > version.
> > >
> > > The compile error with gnu 7.3.0 happens with gnu 6.3.0, too.
> > > The fix/patch is not ready officially. One file has to be
> > > corrected
> > > to support newer version gnu compiler. Would you replace
> > > data_line.cc
> > > with attached file or modify it manually?
> > >
> > > Filename:
> > > met-8.1/src/basic/vx_util/data_line.cc
> > >
> > > line 202:
> > >
> > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > >
> > > line 218:
> > >
> > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Tue May 21 18:21:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Did new external libraries need to be built with 8.1?
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, May 16, 2019 4:01 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > Prestopnik
> > > >
> > > > No new tools but many enhancements.
> > > >
> > > > It's available at
> > > > https://dtcenter.org/community-code/model-evaluation-tools-
> > > > met/met-
> > > > version-8-1
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > > On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > Maybe you can answer one question while I try to reinstall
> > > > > everything. What features does 8.1 provide over 8.0?
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > Would try this command at /software/depot/met-8.1/met-
> > > > > 8.1/scripts
> > > > > directory?
> > > > >
> > > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > > echo $LD_LIBRARY_PATH
> > > > >
> > > > > 2. Save LD_LIBRARY_PATH
> > > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > > OR
> > > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > > >
> > > > > 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-
> > > > > 2.4.0/lib
> > > > >
> > > > > 4. Check which libgfortran.so at /software/depot/met-
8.1/met-
> > > > > 8.1/scripts directory.
> > > > >
> > > > > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran OR ldd
> > > > > ../bin/pb2nc | grep libgfortran
> > > > >
> > > > > 5. Check libgfortran version (should be libgfortran.so.3,
not
> > > > > so.4)
> > > > >
> > > > > 6. Run the failed command manually at /software/depot/met-
> > > > > 8.1/met-
> > > > > 8.1/scripts directory if libgfortran.so.3.
> > > > >
> > > > > ../src/tools/other/pb2nc/pb2nc \
> > > > >
> > > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > > \
> > > > > ../out/pb2nc/sample_pb.nc \
> > > > > config/PB2NCConfig_G212 \
> > > > > -v 2
> > > > >
> > > > > 7. Change back LD_LIBRARY_PATH
> > > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > > OR
> > > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > >
> > > > > On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-
grib2-
> > > > > > support
> > > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > (0x0000003453800000)
> > > > > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > > > > > libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> > > > > > libpng16.so.16 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> > > > > > libz.so.1 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > (0x00007f7f19af4000)
> > > > > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > (0x00007f7f198a6000)
> > > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> > > > > > libgsl.so.19 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libgslcblas.so.0
(0x00007f7f18eeb000)
> > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > (0x00007f7f18c99000)
> > > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > (0x00007f7f18b58000)
> > > > > > libgcc_s.so.1 =>
> > > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > > (0x00007f7f18b42000)
> > > > > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
(0x00007f7f18922000)
> > > > > > libhdf5.so.10 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > > > > > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > > > > > [ramos at lorenz bin]$
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > MET is expecting "libpython2.7.so" to enable python
support.
> > > > > >
> > > > > > A log message shows the python was not enabled. Is python
> > > > > > supporting is critical?
> > > > > >
> > > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > > > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > > > > --enable-lidar2nc > configure.log 2>&1
> > > > > >
> > > > > > If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> > > > > > 1. Make sure python is not enabled
> > > > > > no "--enable-python" option for ./configure
> > > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
> > > > > > LD_LIBRARY_PATH at the build time and runtime both.
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > > On Thu May 16 14:17:40 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > > >
> > > > > > > ramos at leo1:~> gcc --version
> > > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright (C) 2017
> > > > > > > Free
> > > > > > > Software Foundation, Inc.
> > > > > > > This is free software; see the source for copying
> > > > > > > conditions.
> > > > > > > There
> > > > > > > is NO
> > > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > > PARTICULAR PURPOSE.
> > > > > > >
> > > > > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC) 7.3.0
> > > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free Software
> > > > > > > Foundation, Inc.
> > > > > > > This is free software; see the source for copying
> > > > > > > conditions.
> > > > > > > There
> > > > > > > is NO
> > > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > > PARTICULAR PURPOSE.
> > > > > > >
> > > > > > > ramos at leo1:~>
> > > > > > >
> > > > > > > We don't have that version on our Red Hat systems. Met
8.0
> > > > > > > worked on RH, but 8.1 failed on the 'make test'. The
user
> > > > > > > says
> > > > > > > she is fine with the executables so far. I will have to
> > > > > > > build
> > > > > > > a
> > > > > > > gfortran 7.x version.
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Hello,
> > > > > > >
> > > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > > >
> > > > > > > The problem was caused by the path for python library
> > > > > > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4
> > > > > > > exists
> > > > > > > there
> > > > > > > from the ldd output. It was used on building MET. MET
was
> > > > > > > compiled
> > > > > > > with gcc 4.4.7 which supports only libgfortran.so.3, and
> > > > > > > linked
> > > > > > > with
> > > > > > > libgfortran.so.4 because of MET_PYTHON_LD configuration.
> > > > > > > Some
> > > > > > > libraries do not support the backward compatibility.
> > > > > > > libgfortran.so
> > > > > > > is
> > > > > > > one of them. In this case, the compiler version and
library
> > > > > > > version
> > > > > > > should match.
> > > > > > >
> > > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
> > > > > > > 8.1/bin/pb2nc
> > > > > > > |grep
> > > > > > > gfortran
> > > > > > > libgfortran.so.4 => /software/depot/anaconda-
> > > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > > >
> > > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-
2.4.0/lib\
> > > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\
> > > > > > > -export-
> > > > > > > dynamic
> > > > > > >
> > > > > > > The solution is compiling third party libraries and MET
> > > > > > > with
> > > > > > > version
> > > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > > > > > libgfortran.so.5,
> > > > > > > So the same problem will happen if MET is built with
> > > > > > > gcc/gfortran
> > > > > > > 6.x
> > > > > > > or gcc/gfortran 8.x.
> > > > > > >
> > > > > > > Cheers,
> > > > > > > Howard
> > > > > > >
> > > > > > > On Mon May 13 18:36:04 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > wrote:
> > > > > > > > Attached is the config.log for NetCDf it shows
> > > > > > > > /usr/bin/gcc
> > > > > > > >
> > > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat
> > > > > > > > version.
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > 8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Thank you. Unfortunately, that does not tell me if
the
> > > > > > > > libraries
> > > > > > > > and
> > > > > > > > the
> > > > > > > > MET code were built with the same version of the
> > > > > > > > compiler.
> > > > > > > > I
> > > > > > > > also
> > > > > > > > do
> > > > > > > > not
> > > > > > > > see bufrlib in that list.
> > > > > > > >
> > > > > > > > Can you please tell me - were the libraries and the
MET
> > > > > > > > code
> > > > > > > > built
> > > > > > > > with the
> > > > > > > > same version of the compiler? I'm checking to see if,
> > > > > > > > for
> > > > > > > > example,
> > > > > > > > the
> > > > > > > > libraries were built with gcc-6.3.0 but the MET code
was
> > > > > > > > build
> > > > > > > > with
> > > > > > > > gcc-4.4.7.
> > > > > > > >
> > > > > > > > Thanks!
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
> > > > > > > > Contractor,
> > > > > > > > Code
> > > > > > > > 7501.1
> > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > <URL:
> > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > > You can see I am using those libraries for MET 8.1:
> > > > > > > > >
> > > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > > /software/depot/anaconda-
2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > > (0x00002ab75e63b000)
> > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > (0x00002ab75e858000)
> > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > > libpng16.so.16 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > (0x00002ab75ec60000)
> > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > (0x00002ab75ee92000)
> > > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > (0x00002ab75f32f000)
> > > > > > > > > libnetcdf.so.11 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > (0x00002ab75f57c000)
> > > > > > > > > libgsl.so.19 =>
> > > > > > > > > /software/depot/met-
8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > > libgslcblas.so.0 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > (0x00002ab75ff37000)
> > > > > > > > > libstdc++.so.6 =>
> > > > > > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > > > > > (0x00002ab760189000)
> > > > > > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > > (0x00002ab7602cb000)
> > > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > > (0x00002ab7602e0000)
> > > > > > > > > /lib64/ld-linux-x86-64.so.2
> > > > > > > > > (0x0000559353f4f000)
> > > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > (0x00002ab760675000)
> > > > > > > > > libhdf5.so.10 =>
> > > > > > > > > /software/depot/met-
8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > (0x00002ab760894000)
> > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > (0x00002ab760d6f000)
> > > > > > > > > [root at maury2 bin]#
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
> > > > > > > > > MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Thank you, Greg. Can you please tell me - were the
> > > > > > > > > libraries
> > > > > > > > > and
> > > > > > > > > the
> > > > > > > > > MET
> > > > > > > > > code built with the same version of the compiler.
I'm
> > > > > > > > > checking
> > > > > > > > > to
> > > > > > > > > see if,
> > > > > > > > > for example, the libraries were built with gcc-6.3.0
> > > > > > > > > but
> > > > > > > > > the
> > > > > > > > > MET
> > > > > > > > > code
> > > > > > > > > was
> > > > > > > > > build with gcc-4.4.7.
> > > > > > > > >
> > > > > > > > > It sounds like we need the libraries and the MET
code
> > > > > > > > > to
> > > > > > > > > be
> > > > > > > > > built
> > > > > > > > > with the
> > > > > > > > > same version of the compiler, in this case.
> > > > > > > > >
> > > > > > > > > Thanks for any information you can provide.
> > > > > > > > >
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
> > > > > > > > > Contractor,
> > > > > > > > > Code
> > > > > > > > > 7501.1
> > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <URL:
> > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > Find the logs attached.
> > > > > > > > > >
> > > > > > > > > > Greg
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > > > MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > Could you please run the following:
> > > > > > > > > >
> > > > > > > > > > which pb2nc
> > > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > > >
> > > > > > > > > > and send me the output?
> > > > > > > > > >
> > > > > > > > > > Please also send your config.log and make.log
file.
> > > > > > > > > >
> > > > > > > > > > Thank you!
> > > > > > > > > >
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr.
Gregory,
> > > > > > > > > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > 7501.1
> > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > <URL:
> > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > I used the buildscript. It should build all of
the
> > > > > > > > > > > external
> > > > > > > > > > > libraries,
> > > > > > > > > so
> > > > > > > > > > > I believe everything was built with the same
> > > > > > > > > > > compiler.
> > > > > > > > > > >
> > > > > > > > > > > Greg
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > regarding
> > > > > > > > > > > MET
> > > > > > > > > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > Prestopnik
> > > > > > > > > > >
> > > > > > > > > > > Hi Greg. Our developer suspects it may be a
> > > > > > > > > > > mismatched
> > > > > > > > > compiler/library
> > > > > > > > > > > version. Was BUFRLIB installed with the same
> > > > > > > > > > > compiler
> > > > > > > > > > > as
> > > > > > > > > > > MET?
> > > > > > > > > > > Also,
> > > > > > > > > > what
> > > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > > >
> > > > > > > > > > > Thanks,
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie
Prestopnik
> > > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > > wrote:
> > > > > > > > > > >
> > > > > > > > > > > > Hi Greg. I am checking in with another
developer
> > > > > > > > > > > > regarding
> > > > > > > > > > > > the
> > > > > > > > > > > > error
> > > > > > > > > > you
> > > > > > > > > > > > experienced. Thank you for your patience.
> > > > > > > > > > > >
> > > > > > > > > > > > Julie
> > > > > > > > > > > >
> > > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr.
> > > > > > > > > > > > Gregory,
> > > > > > > > > > > > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >
> > > > > > > > > > > >>
> > > > > > > > > > > >> <URL:
> > > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> >
> > > > > > > > > > > >>
> > > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > > >>
> > > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > > > > > >> Copyright (C) 2010 Free Software Foundation,
> > > > > > > > > > > >> Inc.
> > > > > > > > > > > >> This is free software; see the source for
> > > > > > > > > > > >> copying
> > > > > > > > > > > >> conditions.
> > > > > > > > > > > >> There
> > > > > > > > > > is
> > > > > > > > > > > NO
> > > > > > > > > > > >> warranty; not even for MERCHANTABILITY or
> > > > > > > > > > > >> FITNESS
> > > > > > > > > > > >> FOR
> > > > > > > > > > > >> A
> > > > > > > > > > > >> PARTICULAR
> > > > > > > > > > > >> PURPOSE.
> > > > > > > > > > > >>
> > > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > > >>
> > > > > > > > > > > >> Not all of the tests passed, please see
> > > > > > > > > > > >> attachment.
> > > > > > > > > > > >>
> > > > > > > > > > > >> Greg
> > > > > > > > > > > >>
> > > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > >> regarding
> > > > > > > > > > > >> MET
> > > > > > > > > > > >> 8.1
> > > > > > > > > > > >> Julie
> > > > > > > > > > > >> Prestopnik
> > > > > > > > > > > >>
> > > > > > > > > > > >> Thank you for letting me know. I will
proceed
> > > > > > > > > > > >> with
> > > > > > > > > > > >> trying
> > > > > > > > > > > >> to
> > > > > > > > > > reproduce
> > > > > > > > > > > >> the
> > > > > > > > > > > >> problem using the gcc-6.3.0. I will follow
up
> > > > > > > > > > > >> once
> > > > > > > > > > > >> I
> > > > > > > > > > > >> have
> > > > > > > > > > > >> more
> > > > > > > > > > > >> information.
> > > > > > > > > > > >>
> > > > > > > > > > > >> Julie
> > > > > > > > > > > >>
> > > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr.
> > > > > > > > > > > >> Gregory,
> > > > > > > > > > > >> Contractor,
> > > > > > > > > > > >> Code
> > > > > > > > > > > 7501.1
> > > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >>
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > <URL:
> > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > When I compiled MET 8.0 the last time, it
> > > > > > > > > > > >> > worked.
> > > > > > > > > > > >> > I
> > > > > > > > > > > >> > was
> > > > > > > > > > > >> > also
> > > > > > > > > > > >> > able
> > > > > > > > > to
> > > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > > >> > Password:
> > > > > > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
> > > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > You are accessing a U.S. Government (USG)
> > > > > > > > > > > >> > Information
> > > > > > > > > > > >> > System
> > > > > > > > > > > >> > (IS)
> > > > > > > > > > that
> > > > > > > > > > > >> is
> > > > > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > > > > >> > By using this IS (which includes any device
> > > > > > > > > > > >> > attached
> > > > > > > > > > > >> > to
> > > > > > > > > > > >> > this
> > > > > > > > > > > >> > IS),
> > > > > > > > > > you
> > > > > > > > > > > >> > consent to the following conditions:
> > > > > > > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > > > > > > >> > communications
> > > > > > > > > > > >> > on
> > > > > > > > > > > >> > this
> > > > > > > > > IS
> > > > > > > > > > > for
> > > > > > > > > > > >> > purposes including, but not limited to,
> > > > > > > > > > > >> > penetration testing, COMSEC monitoring,
> > > > > > > > > > > >> > network
> > > > > > > > > > > >> > operations
> > > > > > > > > > > >> > and
> > > > > > > > > > > defense,
> > > > > > > > > > > >> > personnel misconduct (PM), law enforcement
> > > > > > > > > > > >> > (LE),
> > > > > > > > > > > >> > and counterintelligence (CI)
investigations.
> > > > > > > > > > > >> > -At any time, the USG may inspect and seize
> > > > > > > > > > > >> > data
> > > > > > > > > > > >> > stored
> > > > > > > > > > > >> > on
> > > > > > > > > > > >> > this
> > > > > > > > > IS.
> > > > > > > > > > > >> > -Communications using, or data stored on,
this
> > > > > > > > > > > >> > IS
> > > > > > > > > > > >> > are
> > > > > > > > > > > >> > not
> > > > > > > > > > > >> > private,
> > > > > > > > > > are
> > > > > > > > > > > >> > subject to routine monitoring,
interception,
> > > > > > > > > > > >> > and search, and may be disclosed or used
for
> > > > > > > > > > > >> > any
> > > > > > > > > > > >> > USG-
> > > > > > > > > > > >> > authorized
> > > > > > > > > > > purpose.
> > > > > > > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > > > > > > >> > authentication
> > > > > > > > > > > >> > and
> > > > > > > > > access
> > > > > > > > > > > >> > controls) to protect USG interests -- not
for
> > > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > > >> > -Notwithstanding the above, using this IS
does
> > > > > > > > > > > >> > not
> > > > > > > > > > > >> > constitute
> > > > > > > > > > consent
> > > > > > > > > > > to
> > > > > > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > > > > > >> > monitoring of the content of privileged
> > > > > > > > > > > >> > communications,
> > > > > > > > > > > >> > or
> > > > > > > > > > > >> > work
> > > > > > > > > > > product,
> > > > > > > > > > > >> > related to personal representation or
> > > > > > > > > > > >> > services by attorneys, psychotherapists, or
> > > > > > > > > > > >> > clergy,
> > > > > > > > > > > >> > and
> > > > > > > > > > > >> > their
> > > > > > > > > > > >> assistants.
> > > > > > > > > > > >> > Such communications and work product are
> > > > > > > > > > > >> > private and confidential. See User
Agreement
> > > > > > > > > > > >> > for
> > > > > > > > > > > >> > details.
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > >> > regarding
> > > > > > > > > > > >> > MET
> > > > > > > > > > > >> > 8.1
> > > > > > > > > Julie
> > > > > > > > > > > >> > Prestopnik
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > Hi Gregory. I have not tested with version
> > > > > > > > > > > >> > 6.3.0
> > > > > > > > > > > >> > of
> > > > > > > > > > > >> > the
> > > > > > > > > > > >> > gcc
> > > > > > > > > > compiler,
> > > > > > > > > > > >> but
> > > > > > > > > > > >> > rather only with lower versions
(specifically
> > > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > > >> > We
> > > > > > > > > > > >> > would,
> > > > > > > > > of
> > > > > > > > > > > >> course,
> > > > > > > > > > > >> > want our code to work with higher versions
as
> > > > > > > > > > > >> > well.
> > > > > > > > > > > >> > I
> > > > > > > > > > > >> > have
> > > > > > > > > > > >> > not
> > > > > > > > > yet
> > > > > > > > > > > had
> > > > > > > > > > > >> an
> > > > > > > > > > > >> > opportunity to test with a higher version
like
> > > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > > >> > Do
> > > > > > > > > > > >> > you have
> > > > > > > > > > the
> > > > > > > > > > > >> > ability to compile MET using a lesser
version
> > > > > > > > > > > >> > of
> > > > > > > > > > > >> > the
> > > > > > > > > > > >> > gcc
> > > > > > > > > > > >> > compiler
> > > > > > > > > to
> > > > > > > > > > > >> see if
> > > > > > > > > > > >> > that clears up the issues you are
> > > > > > > > > > > >> > experiencing?
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > Julie
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr.
> > > > > > > > > > > >> > Gregory,
> > > > > > > > > > > >> > Contractor,
> > > > > > > > > Code
> > > > > > > > > > > >> 7501.1
> > > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > <URL:
> > > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Greg
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > >> > > regarding
> > > > > > > > > > > >> > > MET
> > > > > > > > > > > >> > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Hi Greg. Thank you for passing along
your
> > > > > > > > > > > >> > > config.log
> > > > > > > > > > > >> > > file. I
> > > > > > > > > > see a
> > > > > > > > > > > >> > couple
> > > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Based on those errors, it looks like you
may
> > > > > > > > > > > >> > > not
> > > > > > > > > > > >> > > have
> > > > > > > > > > > >> > > flex
> > > > > > > > > > > >> > > and
> > > > > > > > > > bison
> > > > > > > > > > > >> > > installed. Please install those and try
> > > > > > > > > > > >> > > running
> > > > > > > > > > > >> > > configure
> > > > > > > > > again.
> > > > > > > > > > > >> Please
> > > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Also, I just wanted to address one other
> > > > > > > > > > > >> > > thing.
> > > > > > > > > > > >> > > In
> > > > > > > > > > > >> > > your
> > > > > > > > > original
> > > > > > > > > > > >> email
> > > > > > > > > > > >> > you
> > > > > > > > > > > >> > > listed the following as part of your "MET
> > > > > > > > > > > >> > > Configuration
> > > > > > > > > settings":
> > > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7
-lpthread
> > > > > > > > > > > >> > > -ldl
> > > > > > > > > > > >> > > -lutil
> > > > > > > > > > > >> > > -lm
> > > > > > > > > > -Xlinker
> > > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > However, in your config.log file it looks
> > > > > > > > > > > >> > > like
> > > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > > >> actually
> > > > > > > > > > > >> > > set to be "-L/software/depot/anaconda-
> > > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > > -lpthread
> > > > > > > > > > > >> > -ldl
> > > > > > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic",
which
> > > > > > > > > > > >> > > is
> > > > > > > > > > > >> > > correct
> > > > > > > > > > > >> > > because
> > > > > > > > > you
> > > > > > > > > > > >> need
> > > > > > > > > > > >> > to
> > > > > > > > > > > >> > > have that -L part in there, so I just
want
> > > > > > > > > > > >> > > to
> > > > > > > > > > > >> > > ensure
> > > > > > > > > > > >> > > that
> > > > > > > > > > > >> > > will
> > > > > > > > > > stay
> > > > > > > > > > > >> there
> > > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Thanks,
> > > > > > > > > > > >> > > Julie
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr.
> > > > > > > > > > > >> > > Gregory,
> > > > > > > > > > > >> > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > <URL:
> > > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
> > > > > > > > > > > >> > > > configure.log
> > > > > > > > > > > >> > > > -bash: [ramos at predict: command not
found
> > > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > >> > > > regarding
> > > > > > > > > > > >> > > > MET
> > > > > > > > > > > >> > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > I'll go ahead and assign this ticket to
> > > > > > > > > > > >> > > > Julie,
> > > > > > > > > > > >> > > > and
> > > > > > > > > > > >> > > > she
> > > > > > > > > > > >> > > > should
> > > > > > > > > be
> > > > > > > > > > > >> > writing
> > > > > > > > > > > >> > > > you back in the next couple of days.
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > > >> > > > file you
> > > > > > > > > > > >> > generated
> > > > > > > > > > > >> > > as
> > > > > > > > > > > >> > > > well as the "config.log" file from that
> > > > > > > > > > > >> > > > same
> > > > > > > > > > > >> > > > directory.
> > > > > > > > > > > >> > > > So
> > > > > > > > > > please
> > > > > > > > > > > >> send
> > > > > > > > > > > >> > > > those along when you get a chance.
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > > >> > > > John
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos,
Mr.
> > > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request
90091
> > > > > > > > > > > >> > > > > was
> > > > > > > > > > > >> > > > > acted
> > > > > > > > > > > >> > > > > upon.
> > > > > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
> > > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > > >> > > > > Requestors:
> > > > > > > > > > > >> > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > > Julie helped me compiled 8.0 using
gcc
> > > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > > >> > > > > and
> > > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > > 2.4.0.
> > > > > > > > > > > >> The
> > > > > > > > > > > >> > > user
> > > > > > > > > > > >> > > > > asked for 8.1. I took notes last
time,
> > > > > > > > > > > >> > > > > but
> > > > > > > > > > > >> > > > > running
> > > > > > > > > > > >> > > > > into
> > > > > > > > > > > problems:
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > > >> > > > > export
MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> >
> > > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3
-Wall
> > > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> >
> > > > > > > > > > > >>
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > > >> > > > > export
MET_HDFEOS=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
MET_NETCDF=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > >> > > > > export
> > > > > > > > > MET_CAIROLIB=/software/depot/met-
8.1/external_libs/lib
> > > > > > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7
> > > > > > > > > > > >> > > > > -lpthread
> > > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > > >> > > > > -lm
> > > > > > > > > > > >> -Xlinker
> > > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > > >> > > > > export
MET_GRIB2C=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
MET_SUBDIR=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > >> > > > > export
MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > > > > > >> > > > > ./configure
> > > > > > > > > > > >> > > > > --prefix=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > >> --enable-grib2
> > > > > > > > > > > >> > > > > --enable-modis --enable-mode_graphics
> > > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > > >> > > configure.log
> > > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > > >> > > > > configure returned with non-zero
(127)
> > > > > > > > > > > >> > > > > status
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> >
> > > > > > > > > > > >>
> > > > > > > > > > > >>
> > > > > > > > > > > >>
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Wed May 22 12:41:21 2019
[ramos at lorenz met-8.1a]$ cd /software/depot/met-8.1a/met-8.1a/scripts
[ramos at lorenz scripts]$
[ramos at lorenz scripts]$ ../src/tools/other/ascii2nc/ascii2nc
../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v 2
ERROR :
ERROR : CommandLine::is_switch(const char *) const -> empty string!
ERROR :
[ramos at lorenz scripts]$
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Wednesday, May 22, 2019 11:34 AM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Would you run the same command manually and sen me the output?
cd /software/depot/met-8.1a/met-8.1a/scripts
../src/tools/other/ascii2nc/ascii2nc
../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v 2
(NOTE: the same dcommand but one line instead of multiple lines)
If the command works, would you send me Makefile at the current
directory.
If not working, please run following commands and send me
ascii2nc_test.log.
../src/tools/other/ascii2nc/ascii2nc
../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v 5
-log ascii2nc_test.log
ldd ../src/tools/other/ascii2nc/ascii2nc >> ascii2nc_test.log
Cheers,
Howard
On Wed May 22 11:26:02 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> Attached find my make.log and make_test.log
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Wednesday, May 22, 2019 7:11 AM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> The runntime NetCDF library is decided by LD_LIBRARY_PATH.
> LD_LIBRARY_PATH can be changed by module loading or by user
> configurations. If the problem happens with NetCDF, would you ask
them
> to run this command and check which NetCDF library is loaded?
>
> ldd bin/<MET_tool_name> | grep netcdf
> ldd bin/<MET_tool_name> | grep hdf
>
> for example,
> ldd bin/pb2nc | grep netcdf
> ldd bin/pb2nc | grep hdf
> ldd bin/grid_stat | grep netcdf
> ldd bin/grid_stat | grep hdf
>
> Note: There are dependency between NetCDF4 and HDF5.
>
> Cheers,
> Howard
>
> On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > OK, we have several people who are using the 8.1 version I built.
We
> > use a central location:
> >
> > /software/depot
> >
> > To house all of our software. To be clear, the first build went
OK,
> > it
> > was 'make test' that failed. So the users are using that, but
someone
> > ran into an error today and they asked me about NetCDF. I think it
> > was
> > their setup. The same build was used on two different machines,
one
> > had an error, one didn't.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Tuesday, May 21, 2019 5:50 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > No, external libraries are not changed.
> >
> > Personally, I'm using newer NetCDF library (4.6.x instead of
> > 4.4.1.1).
> >
> > Cheers,
> > Howard
> >
> > On Tue May 21 18:39:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > No, that is not what I am asking. Every time I build, I use your
> > > script which builds everything.
> > >
> > > What I am asking is, did the versions of the external libraries
> > > change?
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Tuesday, May 21, 2019 5:34 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > Yes, the third party libraries should be compiled with newer
> > > version.
> > >
> > > The compile error with gnu 7.3.0 happens with gnu 6.3.0, too.
> > > The fix/patch is not ready officially. One file has to be
> > > corrected
> > > to support newer version gnu compiler. Would you replace
> > > data_line.cc
> > > with attached file or modify it manually?
> > >
> > > Filename:
> > > met-8.1/src/basic/vx_util/data_line.cc
> > >
> > > line 202:
> > >
> > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > >
> > > line 218:
> > >
> > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Tue May 21 18:21:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Did new external libraries need to be built with 8.1?
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, May 16, 2019 4:01 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > Prestopnik
> > > >
> > > > No new tools but many enhancements.
> > > >
> > > > It's available at
> > > > https://dtcenter.org/community-code/model-evaluation-tools-
> > > > met/met-
> > > > version-8-1
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > > On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > Maybe you can answer one question while I try to reinstall
> > > > > everything. What features does 8.1 provide over 8.0?
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > Would try this command at /software/depot/met-8.1/met-
> > > > > 8.1/scripts
> > > > > directory?
> > > > >
> > > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > > echo $LD_LIBRARY_PATH
> > > > >
> > > > > 2. Save LD_LIBRARY_PATH
> > > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > > OR
> > > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > > >
> > > > > 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-
> > > > > 2.4.0/lib
> > > > >
> > > > > 4. Check which libgfortran.so at /software/depot/met-
8.1/met-
> > > > > 8.1/scripts directory.
> > > > >
> > > > > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran OR ldd
> > > > > ../bin/pb2nc | grep libgfortran
> > > > >
> > > > > 5. Check libgfortran version (should be libgfortran.so.3,
not
> > > > > so.4)
> > > > >
> > > > > 6. Run the failed command manually at /software/depot/met-
> > > > > 8.1/met-
> > > > > 8.1/scripts directory if libgfortran.so.3.
> > > > >
> > > > > ../src/tools/other/pb2nc/pb2nc \
> > > > >
> > > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > > \
> > > > > ../out/pb2nc/sample_pb.nc \
> > > > > config/PB2NCConfig_G212 \
> > > > > -v 2
> > > > >
> > > > > 7. Change back LD_LIBRARY_PATH
> > > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > > OR
> > > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > >
> > > > > On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-
grib2-
> > > > > > support
> > > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > (0x0000003453800000)
> > > > > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > > > > > libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> > > > > > libpng16.so.16 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> > > > > > libz.so.1 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > (0x00007f7f19af4000)
> > > > > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > (0x00007f7f198a6000)
> > > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> > > > > > libgsl.so.19 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libgslcblas.so.0
(0x00007f7f18eeb000)
> > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > (0x00007f7f18c99000)
> > > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > (0x00007f7f18b58000)
> > > > > > libgcc_s.so.1 =>
> > > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > > (0x00007f7f18b42000)
> > > > > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
(0x00007f7f18922000)
> > > > > > libhdf5.so.10 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > > > > > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > > > > > [ramos at lorenz bin]$
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > MET is expecting "libpython2.7.so" to enable python
support.
> > > > > >
> > > > > > A log message shows the python was not enabled. Is python
> > > > > > supporting is critical?
> > > > > >
> > > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > > > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > > > > --enable-lidar2nc > configure.log 2>&1
> > > > > >
> > > > > > If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> > > > > > 1. Make sure python is not enabled
> > > > > > no "--enable-python" option for ./configure
> > > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
> > > > > > LD_LIBRARY_PATH at the build time and runtime both.
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > > On Thu May 16 14:17:40 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > > >
> > > > > > > ramos at leo1:~> gcc --version
> > > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright (C) 2017
> > > > > > > Free
> > > > > > > Software Foundation, Inc.
> > > > > > > This is free software; see the source for copying
> > > > > > > conditions.
> > > > > > > There
> > > > > > > is NO
> > > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > > PARTICULAR PURPOSE.
> > > > > > >
> > > > > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC) 7.3.0
> > > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free Software
> > > > > > > Foundation, Inc.
> > > > > > > This is free software; see the source for copying
> > > > > > > conditions.
> > > > > > > There
> > > > > > > is NO
> > > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > > PARTICULAR PURPOSE.
> > > > > > >
> > > > > > > ramos at leo1:~>
> > > > > > >
> > > > > > > We don't have that version on our Red Hat systems. Met
8.0
> > > > > > > worked on RH, but 8.1 failed on the 'make test'. The
user
> > > > > > > says
> > > > > > > she is fine with the executables so far. I will have to
> > > > > > > build
> > > > > > > a
> > > > > > > gfortran 7.x version.
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Hello,
> > > > > > >
> > > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > > >
> > > > > > > The problem was caused by the path for python library
> > > > > > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4
> > > > > > > exists
> > > > > > > there
> > > > > > > from the ldd output. It was used on building MET. MET
was
> > > > > > > compiled
> > > > > > > with gcc 4.4.7 which supports only libgfortran.so.3, and
> > > > > > > linked
> > > > > > > with
> > > > > > > libgfortran.so.4 because of MET_PYTHON_LD configuration.
> > > > > > > Some
> > > > > > > libraries do not support the backward compatibility.
> > > > > > > libgfortran.so
> > > > > > > is
> > > > > > > one of them. In this case, the compiler version and
library
> > > > > > > version
> > > > > > > should match.
> > > > > > >
> > > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
> > > > > > > 8.1/bin/pb2nc
> > > > > > > |grep
> > > > > > > gfortran
> > > > > > > libgfortran.so.4 => /software/depot/anaconda-
> > > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > > >
> > > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-
2.4.0/lib\
> > > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\
> > > > > > > -export-
> > > > > > > dynamic
> > > > > > >
> > > > > > > The solution is compiling third party libraries and MET
> > > > > > > with
> > > > > > > version
> > > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > > > > > libgfortran.so.5,
> > > > > > > So the same problem will happen if MET is built with
> > > > > > > gcc/gfortran
> > > > > > > 6.x
> > > > > > > or gcc/gfortran 8.x.
> > > > > > >
> > > > > > > Cheers,
> > > > > > > Howard
> > > > > > >
> > > > > > > On Mon May 13 18:36:04 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > wrote:
> > > > > > > > Attached is the config.log for NetCDf it shows
> > > > > > > > /usr/bin/gcc
> > > > > > > >
> > > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat
> > > > > > > > version.
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > 8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Thank you. Unfortunately, that does not tell me if
the
> > > > > > > > libraries
> > > > > > > > and
> > > > > > > > the
> > > > > > > > MET code were built with the same version of the
> > > > > > > > compiler.
> > > > > > > > I
> > > > > > > > also
> > > > > > > > do
> > > > > > > > not
> > > > > > > > see bufrlib in that list.
> > > > > > > >
> > > > > > > > Can you please tell me - were the libraries and the
MET
> > > > > > > > code
> > > > > > > > built
> > > > > > > > with the
> > > > > > > > same version of the compiler? I'm checking to see if,
> > > > > > > > for
> > > > > > > > example,
> > > > > > > > the
> > > > > > > > libraries were built with gcc-6.3.0 but the MET code
was
> > > > > > > > build
> > > > > > > > with
> > > > > > > > gcc-4.4.7.
> > > > > > > >
> > > > > > > > Thanks!
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
> > > > > > > > Contractor,
> > > > > > > > Code
> > > > > > > > 7501.1
> > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > <URL:
> > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > > You can see I am using those libraries for MET 8.1:
> > > > > > > > >
> > > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > > /software/depot/anaconda-
2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > > (0x00002ab75e63b000)
> > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > (0x00002ab75e858000)
> > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > > libpng16.so.16 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > (0x00002ab75ec60000)
> > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > (0x00002ab75ee92000)
> > > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > (0x00002ab75f32f000)
> > > > > > > > > libnetcdf.so.11 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > (0x00002ab75f57c000)
> > > > > > > > > libgsl.so.19 =>
> > > > > > > > > /software/depot/met-
8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > > libgslcblas.so.0 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > (0x00002ab75ff37000)
> > > > > > > > > libstdc++.so.6 =>
> > > > > > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > > > > > (0x00002ab760189000)
> > > > > > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > > (0x00002ab7602cb000)
> > > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > > (0x00002ab7602e0000)
> > > > > > > > > /lib64/ld-linux-x86-64.so.2
> > > > > > > > > (0x0000559353f4f000)
> > > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > (0x00002ab760675000)
> > > > > > > > > libhdf5.so.10 =>
> > > > > > > > > /software/depot/met-
8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > (0x00002ab760894000)
> > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > (0x00002ab760d6f000)
> > > > > > > > > [root at maury2 bin]#
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
> > > > > > > > > MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Thank you, Greg. Can you please tell me - were the
> > > > > > > > > libraries
> > > > > > > > > and
> > > > > > > > > the
> > > > > > > > > MET
> > > > > > > > > code built with the same version of the compiler.
I'm
> > > > > > > > > checking
> > > > > > > > > to
> > > > > > > > > see if,
> > > > > > > > > for example, the libraries were built with gcc-6.3.0
> > > > > > > > > but
> > > > > > > > > the
> > > > > > > > > MET
> > > > > > > > > code
> > > > > > > > > was
> > > > > > > > > build with gcc-4.4.7.
> > > > > > > > >
> > > > > > > > > It sounds like we need the libraries and the MET
code
> > > > > > > > > to
> > > > > > > > > be
> > > > > > > > > built
> > > > > > > > > with the
> > > > > > > > > same version of the compiler, in this case.
> > > > > > > > >
> > > > > > > > > Thanks for any information you can provide.
> > > > > > > > >
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
> > > > > > > > > Contractor,
> > > > > > > > > Code
> > > > > > > > > 7501.1
> > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <URL:
> > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > Find the logs attached.
> > > > > > > > > >
> > > > > > > > > > Greg
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > > > MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > Could you please run the following:
> > > > > > > > > >
> > > > > > > > > > which pb2nc
> > > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > > >
> > > > > > > > > > and send me the output?
> > > > > > > > > >
> > > > > > > > > > Please also send your config.log and make.log
file.
> > > > > > > > > >
> > > > > > > > > > Thank you!
> > > > > > > > > >
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr.
Gregory,
> > > > > > > > > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > 7501.1
> > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > <URL:
> > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > I used the buildscript. It should build all of
the
> > > > > > > > > > > external
> > > > > > > > > > > libraries,
> > > > > > > > > so
> > > > > > > > > > > I believe everything was built with the same
> > > > > > > > > > > compiler.
> > > > > > > > > > >
> > > > > > > > > > > Greg
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > regarding
> > > > > > > > > > > MET
> > > > > > > > > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > Prestopnik
> > > > > > > > > > >
> > > > > > > > > > > Hi Greg. Our developer suspects it may be a
> > > > > > > > > > > mismatched
> > > > > > > > > compiler/library
> > > > > > > > > > > version. Was BUFRLIB installed with the same
> > > > > > > > > > > compiler
> > > > > > > > > > > as
> > > > > > > > > > > MET?
> > > > > > > > > > > Also,
> > > > > > > > > > what
> > > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > > >
> > > > > > > > > > > Thanks,
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie
Prestopnik
> > > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > > wrote:
> > > > > > > > > > >
> > > > > > > > > > > > Hi Greg. I am checking in with another
developer
> > > > > > > > > > > > regarding
> > > > > > > > > > > > the
> > > > > > > > > > > > error
> > > > > > > > > > you
> > > > > > > > > > > > experienced. Thank you for your patience.
> > > > > > > > > > > >
> > > > > > > > > > > > Julie
> > > > > > > > > > > >
> > > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr.
> > > > > > > > > > > > Gregory,
> > > > > > > > > > > > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >
> > > > > > > > > > > >>
> > > > > > > > > > > >> <URL:
> > > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> >
> > > > > > > > > > > >>
> > > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > > >>
> > > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > > > > > >> Copyright (C) 2010 Free Software Foundation,
> > > > > > > > > > > >> Inc.
> > > > > > > > > > > >> This is free software; see the source for
> > > > > > > > > > > >> copying
> > > > > > > > > > > >> conditions.
> > > > > > > > > > > >> There
> > > > > > > > > > is
> > > > > > > > > > > NO
> > > > > > > > > > > >> warranty; not even for MERCHANTABILITY or
> > > > > > > > > > > >> FITNESS
> > > > > > > > > > > >> FOR
> > > > > > > > > > > >> A
> > > > > > > > > > > >> PARTICULAR
> > > > > > > > > > > >> PURPOSE.
> > > > > > > > > > > >>
> > > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > > >>
> > > > > > > > > > > >> Not all of the tests passed, please see
> > > > > > > > > > > >> attachment.
> > > > > > > > > > > >>
> > > > > > > > > > > >> Greg
> > > > > > > > > > > >>
> > > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > >> regarding
> > > > > > > > > > > >> MET
> > > > > > > > > > > >> 8.1
> > > > > > > > > > > >> Julie
> > > > > > > > > > > >> Prestopnik
> > > > > > > > > > > >>
> > > > > > > > > > > >> Thank you for letting me know. I will
proceed
> > > > > > > > > > > >> with
> > > > > > > > > > > >> trying
> > > > > > > > > > > >> to
> > > > > > > > > > reproduce
> > > > > > > > > > > >> the
> > > > > > > > > > > >> problem using the gcc-6.3.0. I will follow
up
> > > > > > > > > > > >> once
> > > > > > > > > > > >> I
> > > > > > > > > > > >> have
> > > > > > > > > > > >> more
> > > > > > > > > > > >> information.
> > > > > > > > > > > >>
> > > > > > > > > > > >> Julie
> > > > > > > > > > > >>
> > > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr.
> > > > > > > > > > > >> Gregory,
> > > > > > > > > > > >> Contractor,
> > > > > > > > > > > >> Code
> > > > > > > > > > > 7501.1
> > > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >>
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > <URL:
> > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > When I compiled MET 8.0 the last time, it
> > > > > > > > > > > >> > worked.
> > > > > > > > > > > >> > I
> > > > > > > > > > > >> > was
> > > > > > > > > > > >> > also
> > > > > > > > > > > >> > able
> > > > > > > > > to
> > > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > > >> > Password:
> > > > > > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
> > > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > You are accessing a U.S. Government (USG)
> > > > > > > > > > > >> > Information
> > > > > > > > > > > >> > System
> > > > > > > > > > > >> > (IS)
> > > > > > > > > > that
> > > > > > > > > > > >> is
> > > > > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > > > > >> > By using this IS (which includes any device
> > > > > > > > > > > >> > attached
> > > > > > > > > > > >> > to
> > > > > > > > > > > >> > this
> > > > > > > > > > > >> > IS),
> > > > > > > > > > you
> > > > > > > > > > > >> > consent to the following conditions:
> > > > > > > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > > > > > > >> > communications
> > > > > > > > > > > >> > on
> > > > > > > > > > > >> > this
> > > > > > > > > IS
> > > > > > > > > > > for
> > > > > > > > > > > >> > purposes including, but not limited to,
> > > > > > > > > > > >> > penetration testing, COMSEC monitoring,
> > > > > > > > > > > >> > network
> > > > > > > > > > > >> > operations
> > > > > > > > > > > >> > and
> > > > > > > > > > > defense,
> > > > > > > > > > > >> > personnel misconduct (PM), law enforcement
> > > > > > > > > > > >> > (LE),
> > > > > > > > > > > >> > and counterintelligence (CI)
investigations.
> > > > > > > > > > > >> > -At any time, the USG may inspect and seize
> > > > > > > > > > > >> > data
> > > > > > > > > > > >> > stored
> > > > > > > > > > > >> > on
> > > > > > > > > > > >> > this
> > > > > > > > > IS.
> > > > > > > > > > > >> > -Communications using, or data stored on,
this
> > > > > > > > > > > >> > IS
> > > > > > > > > > > >> > are
> > > > > > > > > > > >> > not
> > > > > > > > > > > >> > private,
> > > > > > > > > > are
> > > > > > > > > > > >> > subject to routine monitoring,
interception,
> > > > > > > > > > > >> > and search, and may be disclosed or used
for
> > > > > > > > > > > >> > any
> > > > > > > > > > > >> > USG-
> > > > > > > > > > > >> > authorized
> > > > > > > > > > > purpose.
> > > > > > > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > > > > > > >> > authentication
> > > > > > > > > > > >> > and
> > > > > > > > > access
> > > > > > > > > > > >> > controls) to protect USG interests -- not
for
> > > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > > >> > -Notwithstanding the above, using this IS
does
> > > > > > > > > > > >> > not
> > > > > > > > > > > >> > constitute
> > > > > > > > > > consent
> > > > > > > > > > > to
> > > > > > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > > > > > >> > monitoring of the content of privileged
> > > > > > > > > > > >> > communications,
> > > > > > > > > > > >> > or
> > > > > > > > > > > >> > work
> > > > > > > > > > > product,
> > > > > > > > > > > >> > related to personal representation or
> > > > > > > > > > > >> > services by attorneys, psychotherapists, or
> > > > > > > > > > > >> > clergy,
> > > > > > > > > > > >> > and
> > > > > > > > > > > >> > their
> > > > > > > > > > > >> assistants.
> > > > > > > > > > > >> > Such communications and work product are
> > > > > > > > > > > >> > private and confidential. See User
Agreement
> > > > > > > > > > > >> > for
> > > > > > > > > > > >> > details.
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > >> > regarding
> > > > > > > > > > > >> > MET
> > > > > > > > > > > >> > 8.1
> > > > > > > > > Julie
> > > > > > > > > > > >> > Prestopnik
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > Hi Gregory. I have not tested with version
> > > > > > > > > > > >> > 6.3.0
> > > > > > > > > > > >> > of
> > > > > > > > > > > >> > the
> > > > > > > > > > > >> > gcc
> > > > > > > > > > compiler,
> > > > > > > > > > > >> but
> > > > > > > > > > > >> > rather only with lower versions
(specifically
> > > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > > >> > We
> > > > > > > > > > > >> > would,
> > > > > > > > > of
> > > > > > > > > > > >> course,
> > > > > > > > > > > >> > want our code to work with higher versions
as
> > > > > > > > > > > >> > well.
> > > > > > > > > > > >> > I
> > > > > > > > > > > >> > have
> > > > > > > > > > > >> > not
> > > > > > > > > yet
> > > > > > > > > > > had
> > > > > > > > > > > >> an
> > > > > > > > > > > >> > opportunity to test with a higher version
like
> > > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > > >> > Do
> > > > > > > > > > > >> > you have
> > > > > > > > > > the
> > > > > > > > > > > >> > ability to compile MET using a lesser
version
> > > > > > > > > > > >> > of
> > > > > > > > > > > >> > the
> > > > > > > > > > > >> > gcc
> > > > > > > > > > > >> > compiler
> > > > > > > > > to
> > > > > > > > > > > >> see if
> > > > > > > > > > > >> > that clears up the issues you are
> > > > > > > > > > > >> > experiencing?
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > Julie
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr.
> > > > > > > > > > > >> > Gregory,
> > > > > > > > > > > >> > Contractor,
> > > > > > > > > Code
> > > > > > > > > > > >> 7501.1
> > > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > <URL:
> > > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Greg
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > >> > > regarding
> > > > > > > > > > > >> > > MET
> > > > > > > > > > > >> > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Hi Greg. Thank you for passing along
your
> > > > > > > > > > > >> > > config.log
> > > > > > > > > > > >> > > file. I
> > > > > > > > > > see a
> > > > > > > > > > > >> > couple
> > > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Based on those errors, it looks like you
may
> > > > > > > > > > > >> > > not
> > > > > > > > > > > >> > > have
> > > > > > > > > > > >> > > flex
> > > > > > > > > > > >> > > and
> > > > > > > > > > bison
> > > > > > > > > > > >> > > installed. Please install those and try
> > > > > > > > > > > >> > > running
> > > > > > > > > > > >> > > configure
> > > > > > > > > again.
> > > > > > > > > > > >> Please
> > > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Also, I just wanted to address one other
> > > > > > > > > > > >> > > thing.
> > > > > > > > > > > >> > > In
> > > > > > > > > > > >> > > your
> > > > > > > > > original
> > > > > > > > > > > >> email
> > > > > > > > > > > >> > you
> > > > > > > > > > > >> > > listed the following as part of your "MET
> > > > > > > > > > > >> > > Configuration
> > > > > > > > > settings":
> > > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7
-lpthread
> > > > > > > > > > > >> > > -ldl
> > > > > > > > > > > >> > > -lutil
> > > > > > > > > > > >> > > -lm
> > > > > > > > > > -Xlinker
> > > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > However, in your config.log file it looks
> > > > > > > > > > > >> > > like
> > > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > > >> actually
> > > > > > > > > > > >> > > set to be "-L/software/depot/anaconda-
> > > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > > -lpthread
> > > > > > > > > > > >> > -ldl
> > > > > > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic",
which
> > > > > > > > > > > >> > > is
> > > > > > > > > > > >> > > correct
> > > > > > > > > > > >> > > because
> > > > > > > > > you
> > > > > > > > > > > >> need
> > > > > > > > > > > >> > to
> > > > > > > > > > > >> > > have that -L part in there, so I just
want
> > > > > > > > > > > >> > > to
> > > > > > > > > > > >> > > ensure
> > > > > > > > > > > >> > > that
> > > > > > > > > > > >> > > will
> > > > > > > > > > stay
> > > > > > > > > > > >> there
> > > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Thanks,
> > > > > > > > > > > >> > > Julie
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr.
> > > > > > > > > > > >> > > Gregory,
> > > > > > > > > > > >> > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > <URL:
> > > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
> > > > > > > > > > > >> > > > configure.log
> > > > > > > > > > > >> > > > -bash: [ramos at predict: command not
found
> > > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > >> > > > regarding
> > > > > > > > > > > >> > > > MET
> > > > > > > > > > > >> > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > I'll go ahead and assign this ticket to
> > > > > > > > > > > >> > > > Julie,
> > > > > > > > > > > >> > > > and
> > > > > > > > > > > >> > > > she
> > > > > > > > > > > >> > > > should
> > > > > > > > > be
> > > > > > > > > > > >> > writing
> > > > > > > > > > > >> > > > you back in the next couple of days.
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > > >> > > > file you
> > > > > > > > > > > >> > generated
> > > > > > > > > > > >> > > as
> > > > > > > > > > > >> > > > well as the "config.log" file from that
> > > > > > > > > > > >> > > > same
> > > > > > > > > > > >> > > > directory.
> > > > > > > > > > > >> > > > So
> > > > > > > > > > please
> > > > > > > > > > > >> send
> > > > > > > > > > > >> > > > those along when you get a chance.
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > > >> > > > John
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos,
Mr.
> > > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request
90091
> > > > > > > > > > > >> > > > > was
> > > > > > > > > > > >> > > > > acted
> > > > > > > > > > > >> > > > > upon.
> > > > > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
> > > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > > >> > > > > Requestors:
> > > > > > > > > > > >> > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > > Julie helped me compiled 8.0 using
gcc
> > > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > > >> > > > > and
> > > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > > 2.4.0.
> > > > > > > > > > > >> The
> > > > > > > > > > > >> > > user
> > > > > > > > > > > >> > > > > asked for 8.1. I took notes last
time,
> > > > > > > > > > > >> > > > > but
> > > > > > > > > > > >> > > > > running
> > > > > > > > > > > >> > > > > into
> > > > > > > > > > > problems:
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > > >> > > > > export
MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> >
> > > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3
-Wall
> > > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> >
> > > > > > > > > > > >>
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > > >> > > > > export
MET_HDFEOS=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
MET_NETCDF=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > >> > > > > export
> > > > > > > > > MET_CAIROLIB=/software/depot/met-
8.1/external_libs/lib
> > > > > > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7
> > > > > > > > > > > >> > > > > -lpthread
> > > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > > >> > > > > -lm
> > > > > > > > > > > >> -Xlinker
> > > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > > >> > > > > export
MET_GRIB2C=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
MET_SUBDIR=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > >> > > > > export
MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > > > > > >> > > > > ./configure
> > > > > > > > > > > >> > > > > --prefix=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > >> --enable-grib2
> > > > > > > > > > > >> > > > > --enable-modis --enable-mode_graphics
> > > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > > >> > > configure.log
> > > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > > >> > > > > configure returned with non-zero
(127)
> > > > > > > > > > > >> > > > > status
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> >
> > > > > > > > > > > >>
> > > > > > > > > > > >>
> > > > > > > > > > > >>
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Wed May 22 12:42:44 2019
[ramos at lorenz scripts]$ ../src/tools/other/ascii2nc/ascii2nc
../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v 5
-log ascii2nc_test.log
ERROR :
ERROR : CommandLine::is_switch(const char *) const -> empty string!
ERROR :
[ramos at lorenz scripts]$
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Wednesday, May 22, 2019 11:34 AM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Would you run the same command manually and sen me the output?
cd /software/depot/met-8.1a/met-8.1a/scripts
../src/tools/other/ascii2nc/ascii2nc
../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v 2
(NOTE: the same dcommand but one line instead of multiple lines)
If the command works, would you send me Makefile at the current
directory.
If not working, please run following commands and send me
ascii2nc_test.log.
../src/tools/other/ascii2nc/ascii2nc
../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v 5
-log ascii2nc_test.log
ldd ../src/tools/other/ascii2nc/ascii2nc >> ascii2nc_test.log
Cheers,
Howard
On Wed May 22 11:26:02 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> Attached find my make.log and make_test.log
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Wednesday, May 22, 2019 7:11 AM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> The runntime NetCDF library is decided by LD_LIBRARY_PATH.
> LD_LIBRARY_PATH can be changed by module loading or by user
> configurations. If the problem happens with NetCDF, would you ask
them
> to run this command and check which NetCDF library is loaded?
>
> ldd bin/<MET_tool_name> | grep netcdf
> ldd bin/<MET_tool_name> | grep hdf
>
> for example,
> ldd bin/pb2nc | grep netcdf
> ldd bin/pb2nc | grep hdf
> ldd bin/grid_stat | grep netcdf
> ldd bin/grid_stat | grep hdf
>
> Note: There are dependency between NetCDF4 and HDF5.
>
> Cheers,
> Howard
>
> On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > OK, we have several people who are using the 8.1 version I built.
We
> > use a central location:
> >
> > /software/depot
> >
> > To house all of our software. To be clear, the first build went
OK,
> > it
> > was 'make test' that failed. So the users are using that, but
someone
> > ran into an error today and they asked me about NetCDF. I think it
> > was
> > their setup. The same build was used on two different machines,
one
> > had an error, one didn't.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Tuesday, May 21, 2019 5:50 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > No, external libraries are not changed.
> >
> > Personally, I'm using newer NetCDF library (4.6.x instead of
> > 4.4.1.1).
> >
> > Cheers,
> > Howard
> >
> > On Tue May 21 18:39:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > No, that is not what I am asking. Every time I build, I use your
> > > script which builds everything.
> > >
> > > What I am asking is, did the versions of the external libraries
> > > change?
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Tuesday, May 21, 2019 5:34 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > Yes, the third party libraries should be compiled with newer
> > > version.
> > >
> > > The compile error with gnu 7.3.0 happens with gnu 6.3.0, too.
> > > The fix/patch is not ready officially. One file has to be
> > > corrected
> > > to support newer version gnu compiler. Would you replace
> > > data_line.cc
> > > with attached file or modify it manually?
> > >
> > > Filename:
> > > met-8.1/src/basic/vx_util/data_line.cc
> > >
> > > line 202:
> > >
> > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > >
> > > line 218:
> > >
> > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Tue May 21 18:21:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Did new external libraries need to be built with 8.1?
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, May 16, 2019 4:01 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > Prestopnik
> > > >
> > > > No new tools but many enhancements.
> > > >
> > > > It's available at
> > > > https://dtcenter.org/community-code/model-evaluation-tools-
> > > > met/met-
> > > > version-8-1
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > > On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > Maybe you can answer one question while I try to reinstall
> > > > > everything. What features does 8.1 provide over 8.0?
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > Would try this command at /software/depot/met-8.1/met-
> > > > > 8.1/scripts
> > > > > directory?
> > > > >
> > > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > > echo $LD_LIBRARY_PATH
> > > > >
> > > > > 2. Save LD_LIBRARY_PATH
> > > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > > OR
> > > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > > >
> > > > > 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-
> > > > > 2.4.0/lib
> > > > >
> > > > > 4. Check which libgfortran.so at /software/depot/met-
8.1/met-
> > > > > 8.1/scripts directory.
> > > > >
> > > > > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran OR ldd
> > > > > ../bin/pb2nc | grep libgfortran
> > > > >
> > > > > 5. Check libgfortran version (should be libgfortran.so.3,
not
> > > > > so.4)
> > > > >
> > > > > 6. Run the failed command manually at /software/depot/met-
> > > > > 8.1/met-
> > > > > 8.1/scripts directory if libgfortran.so.3.
> > > > >
> > > > > ../src/tools/other/pb2nc/pb2nc \
> > > > >
> > > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > > \
> > > > > ../out/pb2nc/sample_pb.nc \
> > > > > config/PB2NCConfig_G212 \
> > > > > -v 2
> > > > >
> > > > > 7. Change back LD_LIBRARY_PATH
> > > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > > OR
> > > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > >
> > > > > On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-
grib2-
> > > > > > support
> > > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > (0x0000003453800000)
> > > > > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > > > > > libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> > > > > > libpng16.so.16 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> > > > > > libz.so.1 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > (0x00007f7f19af4000)
> > > > > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > (0x00007f7f198a6000)
> > > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> > > > > > libgsl.so.19 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libgslcblas.so.0
(0x00007f7f18eeb000)
> > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > (0x00007f7f18c99000)
> > > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > (0x00007f7f18b58000)
> > > > > > libgcc_s.so.1 =>
> > > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > > (0x00007f7f18b42000)
> > > > > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
(0x00007f7f18922000)
> > > > > > libhdf5.so.10 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > > > > > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > > > > > [ramos at lorenz bin]$
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > MET is expecting "libpython2.7.so" to enable python
support.
> > > > > >
> > > > > > A log message shows the python was not enabled. Is python
> > > > > > supporting is critical?
> > > > > >
> > > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > > > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > > > > --enable-lidar2nc > configure.log 2>&1
> > > > > >
> > > > > > If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> > > > > > 1. Make sure python is not enabled
> > > > > > no "--enable-python" option for ./configure
> > > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
> > > > > > LD_LIBRARY_PATH at the build time and runtime both.
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > > On Thu May 16 14:17:40 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > > >
> > > > > > > ramos at leo1:~> gcc --version
> > > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright (C) 2017
> > > > > > > Free
> > > > > > > Software Foundation, Inc.
> > > > > > > This is free software; see the source for copying
> > > > > > > conditions.
> > > > > > > There
> > > > > > > is NO
> > > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > > PARTICULAR PURPOSE.
> > > > > > >
> > > > > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC) 7.3.0
> > > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free Software
> > > > > > > Foundation, Inc.
> > > > > > > This is free software; see the source for copying
> > > > > > > conditions.
> > > > > > > There
> > > > > > > is NO
> > > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > > PARTICULAR PURPOSE.
> > > > > > >
> > > > > > > ramos at leo1:~>
> > > > > > >
> > > > > > > We don't have that version on our Red Hat systems. Met
8.0
> > > > > > > worked on RH, but 8.1 failed on the 'make test'. The
user
> > > > > > > says
> > > > > > > she is fine with the executables so far. I will have to
> > > > > > > build
> > > > > > > a
> > > > > > > gfortran 7.x version.
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Hello,
> > > > > > >
> > > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > > >
> > > > > > > The problem was caused by the path for python library
> > > > > > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4
> > > > > > > exists
> > > > > > > there
> > > > > > > from the ldd output. It was used on building MET. MET
was
> > > > > > > compiled
> > > > > > > with gcc 4.4.7 which supports only libgfortran.so.3, and
> > > > > > > linked
> > > > > > > with
> > > > > > > libgfortran.so.4 because of MET_PYTHON_LD configuration.
> > > > > > > Some
> > > > > > > libraries do not support the backward compatibility.
> > > > > > > libgfortran.so
> > > > > > > is
> > > > > > > one of them. In this case, the compiler version and
library
> > > > > > > version
> > > > > > > should match.
> > > > > > >
> > > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
> > > > > > > 8.1/bin/pb2nc
> > > > > > > |grep
> > > > > > > gfortran
> > > > > > > libgfortran.so.4 => /software/depot/anaconda-
> > > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > > >
> > > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-
2.4.0/lib\
> > > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\
> > > > > > > -export-
> > > > > > > dynamic
> > > > > > >
> > > > > > > The solution is compiling third party libraries and MET
> > > > > > > with
> > > > > > > version
> > > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > > > > > libgfortran.so.5,
> > > > > > > So the same problem will happen if MET is built with
> > > > > > > gcc/gfortran
> > > > > > > 6.x
> > > > > > > or gcc/gfortran 8.x.
> > > > > > >
> > > > > > > Cheers,
> > > > > > > Howard
> > > > > > >
> > > > > > > On Mon May 13 18:36:04 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > wrote:
> > > > > > > > Attached is the config.log for NetCDf it shows
> > > > > > > > /usr/bin/gcc
> > > > > > > >
> > > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat
> > > > > > > > version.
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > 8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Thank you. Unfortunately, that does not tell me if
the
> > > > > > > > libraries
> > > > > > > > and
> > > > > > > > the
> > > > > > > > MET code were built with the same version of the
> > > > > > > > compiler.
> > > > > > > > I
> > > > > > > > also
> > > > > > > > do
> > > > > > > > not
> > > > > > > > see bufrlib in that list.
> > > > > > > >
> > > > > > > > Can you please tell me - were the libraries and the
MET
> > > > > > > > code
> > > > > > > > built
> > > > > > > > with the
> > > > > > > > same version of the compiler? I'm checking to see if,
> > > > > > > > for
> > > > > > > > example,
> > > > > > > > the
> > > > > > > > libraries were built with gcc-6.3.0 but the MET code
was
> > > > > > > > build
> > > > > > > > with
> > > > > > > > gcc-4.4.7.
> > > > > > > >
> > > > > > > > Thanks!
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
> > > > > > > > Contractor,
> > > > > > > > Code
> > > > > > > > 7501.1
> > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > <URL:
> > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > > You can see I am using those libraries for MET 8.1:
> > > > > > > > >
> > > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > > /software/depot/anaconda-
2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > > (0x00002ab75e63b000)
> > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > (0x00002ab75e858000)
> > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > > libpng16.so.16 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > (0x00002ab75ec60000)
> > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > (0x00002ab75ee92000)
> > > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > (0x00002ab75f32f000)
> > > > > > > > > libnetcdf.so.11 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > (0x00002ab75f57c000)
> > > > > > > > > libgsl.so.19 =>
> > > > > > > > > /software/depot/met-
8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > > libgslcblas.so.0 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > (0x00002ab75ff37000)
> > > > > > > > > libstdc++.so.6 =>
> > > > > > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > > > > > (0x00002ab760189000)
> > > > > > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > > (0x00002ab7602cb000)
> > > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > > (0x00002ab7602e0000)
> > > > > > > > > /lib64/ld-linux-x86-64.so.2
> > > > > > > > > (0x0000559353f4f000)
> > > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > (0x00002ab760675000)
> > > > > > > > > libhdf5.so.10 =>
> > > > > > > > > /software/depot/met-
8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > (0x00002ab760894000)
> > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > (0x00002ab760d6f000)
> > > > > > > > > [root at maury2 bin]#
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
> > > > > > > > > MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Thank you, Greg. Can you please tell me - were the
> > > > > > > > > libraries
> > > > > > > > > and
> > > > > > > > > the
> > > > > > > > > MET
> > > > > > > > > code built with the same version of the compiler.
I'm
> > > > > > > > > checking
> > > > > > > > > to
> > > > > > > > > see if,
> > > > > > > > > for example, the libraries were built with gcc-6.3.0
> > > > > > > > > but
> > > > > > > > > the
> > > > > > > > > MET
> > > > > > > > > code
> > > > > > > > > was
> > > > > > > > > build with gcc-4.4.7.
> > > > > > > > >
> > > > > > > > > It sounds like we need the libraries and the MET
code
> > > > > > > > > to
> > > > > > > > > be
> > > > > > > > > built
> > > > > > > > > with the
> > > > > > > > > same version of the compiler, in this case.
> > > > > > > > >
> > > > > > > > > Thanks for any information you can provide.
> > > > > > > > >
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
> > > > > > > > > Contractor,
> > > > > > > > > Code
> > > > > > > > > 7501.1
> > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <URL:
> > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > Find the logs attached.
> > > > > > > > > >
> > > > > > > > > > Greg
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > > > MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > Could you please run the following:
> > > > > > > > > >
> > > > > > > > > > which pb2nc
> > > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > > >
> > > > > > > > > > and send me the output?
> > > > > > > > > >
> > > > > > > > > > Please also send your config.log and make.log
file.
> > > > > > > > > >
> > > > > > > > > > Thank you!
> > > > > > > > > >
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr.
Gregory,
> > > > > > > > > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > 7501.1
> > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > <URL:
> > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > I used the buildscript. It should build all of
the
> > > > > > > > > > > external
> > > > > > > > > > > libraries,
> > > > > > > > > so
> > > > > > > > > > > I believe everything was built with the same
> > > > > > > > > > > compiler.
> > > > > > > > > > >
> > > > > > > > > > > Greg
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > regarding
> > > > > > > > > > > MET
> > > > > > > > > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > Prestopnik
> > > > > > > > > > >
> > > > > > > > > > > Hi Greg. Our developer suspects it may be a
> > > > > > > > > > > mismatched
> > > > > > > > > compiler/library
> > > > > > > > > > > version. Was BUFRLIB installed with the same
> > > > > > > > > > > compiler
> > > > > > > > > > > as
> > > > > > > > > > > MET?
> > > > > > > > > > > Also,
> > > > > > > > > > what
> > > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > > >
> > > > > > > > > > > Thanks,
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie
Prestopnik
> > > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > > wrote:
> > > > > > > > > > >
> > > > > > > > > > > > Hi Greg. I am checking in with another
developer
> > > > > > > > > > > > regarding
> > > > > > > > > > > > the
> > > > > > > > > > > > error
> > > > > > > > > > you
> > > > > > > > > > > > experienced. Thank you for your patience.
> > > > > > > > > > > >
> > > > > > > > > > > > Julie
> > > > > > > > > > > >
> > > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr.
> > > > > > > > > > > > Gregory,
> > > > > > > > > > > > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >
> > > > > > > > > > > >>
> > > > > > > > > > > >> <URL:
> > > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> >
> > > > > > > > > > > >>
> > > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > > >>
> > > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > > > > > >> Copyright (C) 2010 Free Software Foundation,
> > > > > > > > > > > >> Inc.
> > > > > > > > > > > >> This is free software; see the source for
> > > > > > > > > > > >> copying
> > > > > > > > > > > >> conditions.
> > > > > > > > > > > >> There
> > > > > > > > > > is
> > > > > > > > > > > NO
> > > > > > > > > > > >> warranty; not even for MERCHANTABILITY or
> > > > > > > > > > > >> FITNESS
> > > > > > > > > > > >> FOR
> > > > > > > > > > > >> A
> > > > > > > > > > > >> PARTICULAR
> > > > > > > > > > > >> PURPOSE.
> > > > > > > > > > > >>
> > > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > > >>
> > > > > > > > > > > >> Not all of the tests passed, please see
> > > > > > > > > > > >> attachment.
> > > > > > > > > > > >>
> > > > > > > > > > > >> Greg
> > > > > > > > > > > >>
> > > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > >> regarding
> > > > > > > > > > > >> MET
> > > > > > > > > > > >> 8.1
> > > > > > > > > > > >> Julie
> > > > > > > > > > > >> Prestopnik
> > > > > > > > > > > >>
> > > > > > > > > > > >> Thank you for letting me know. I will
proceed
> > > > > > > > > > > >> with
> > > > > > > > > > > >> trying
> > > > > > > > > > > >> to
> > > > > > > > > > reproduce
> > > > > > > > > > > >> the
> > > > > > > > > > > >> problem using the gcc-6.3.0. I will follow
up
> > > > > > > > > > > >> once
> > > > > > > > > > > >> I
> > > > > > > > > > > >> have
> > > > > > > > > > > >> more
> > > > > > > > > > > >> information.
> > > > > > > > > > > >>
> > > > > > > > > > > >> Julie
> > > > > > > > > > > >>
> > > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr.
> > > > > > > > > > > >> Gregory,
> > > > > > > > > > > >> Contractor,
> > > > > > > > > > > >> Code
> > > > > > > > > > > 7501.1
> > > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >>
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > <URL:
> > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > When I compiled MET 8.0 the last time, it
> > > > > > > > > > > >> > worked.
> > > > > > > > > > > >> > I
> > > > > > > > > > > >> > was
> > > > > > > > > > > >> > also
> > > > > > > > > > > >> > able
> > > > > > > > > to
> > > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > > >> > Password:
> > > > > > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
> > > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > You are accessing a U.S. Government (USG)
> > > > > > > > > > > >> > Information
> > > > > > > > > > > >> > System
> > > > > > > > > > > >> > (IS)
> > > > > > > > > > that
> > > > > > > > > > > >> is
> > > > > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > > > > >> > By using this IS (which includes any device
> > > > > > > > > > > >> > attached
> > > > > > > > > > > >> > to
> > > > > > > > > > > >> > this
> > > > > > > > > > > >> > IS),
> > > > > > > > > > you
> > > > > > > > > > > >> > consent to the following conditions:
> > > > > > > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > > > > > > >> > communications
> > > > > > > > > > > >> > on
> > > > > > > > > > > >> > this
> > > > > > > > > IS
> > > > > > > > > > > for
> > > > > > > > > > > >> > purposes including, but not limited to,
> > > > > > > > > > > >> > penetration testing, COMSEC monitoring,
> > > > > > > > > > > >> > network
> > > > > > > > > > > >> > operations
> > > > > > > > > > > >> > and
> > > > > > > > > > > defense,
> > > > > > > > > > > >> > personnel misconduct (PM), law enforcement
> > > > > > > > > > > >> > (LE),
> > > > > > > > > > > >> > and counterintelligence (CI)
investigations.
> > > > > > > > > > > >> > -At any time, the USG may inspect and seize
> > > > > > > > > > > >> > data
> > > > > > > > > > > >> > stored
> > > > > > > > > > > >> > on
> > > > > > > > > > > >> > this
> > > > > > > > > IS.
> > > > > > > > > > > >> > -Communications using, or data stored on,
this
> > > > > > > > > > > >> > IS
> > > > > > > > > > > >> > are
> > > > > > > > > > > >> > not
> > > > > > > > > > > >> > private,
> > > > > > > > > > are
> > > > > > > > > > > >> > subject to routine monitoring,
interception,
> > > > > > > > > > > >> > and search, and may be disclosed or used
for
> > > > > > > > > > > >> > any
> > > > > > > > > > > >> > USG-
> > > > > > > > > > > >> > authorized
> > > > > > > > > > > purpose.
> > > > > > > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > > > > > > >> > authentication
> > > > > > > > > > > >> > and
> > > > > > > > > access
> > > > > > > > > > > >> > controls) to protect USG interests -- not
for
> > > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > > >> > -Notwithstanding the above, using this IS
does
> > > > > > > > > > > >> > not
> > > > > > > > > > > >> > constitute
> > > > > > > > > > consent
> > > > > > > > > > > to
> > > > > > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > > > > > >> > monitoring of the content of privileged
> > > > > > > > > > > >> > communications,
> > > > > > > > > > > >> > or
> > > > > > > > > > > >> > work
> > > > > > > > > > > product,
> > > > > > > > > > > >> > related to personal representation or
> > > > > > > > > > > >> > services by attorneys, psychotherapists, or
> > > > > > > > > > > >> > clergy,
> > > > > > > > > > > >> > and
> > > > > > > > > > > >> > their
> > > > > > > > > > > >> assistants.
> > > > > > > > > > > >> > Such communications and work product are
> > > > > > > > > > > >> > private and confidential. See User
Agreement
> > > > > > > > > > > >> > for
> > > > > > > > > > > >> > details.
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > >> > regarding
> > > > > > > > > > > >> > MET
> > > > > > > > > > > >> > 8.1
> > > > > > > > > Julie
> > > > > > > > > > > >> > Prestopnik
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > Hi Gregory. I have not tested with version
> > > > > > > > > > > >> > 6.3.0
> > > > > > > > > > > >> > of
> > > > > > > > > > > >> > the
> > > > > > > > > > > >> > gcc
> > > > > > > > > > compiler,
> > > > > > > > > > > >> but
> > > > > > > > > > > >> > rather only with lower versions
(specifically
> > > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > > >> > We
> > > > > > > > > > > >> > would,
> > > > > > > > > of
> > > > > > > > > > > >> course,
> > > > > > > > > > > >> > want our code to work with higher versions
as
> > > > > > > > > > > >> > well.
> > > > > > > > > > > >> > I
> > > > > > > > > > > >> > have
> > > > > > > > > > > >> > not
> > > > > > > > > yet
> > > > > > > > > > > had
> > > > > > > > > > > >> an
> > > > > > > > > > > >> > opportunity to test with a higher version
like
> > > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > > >> > Do
> > > > > > > > > > > >> > you have
> > > > > > > > > > the
> > > > > > > > > > > >> > ability to compile MET using a lesser
version
> > > > > > > > > > > >> > of
> > > > > > > > > > > >> > the
> > > > > > > > > > > >> > gcc
> > > > > > > > > > > >> > compiler
> > > > > > > > > to
> > > > > > > > > > > >> see if
> > > > > > > > > > > >> > that clears up the issues you are
> > > > > > > > > > > >> > experiencing?
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > Julie
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr.
> > > > > > > > > > > >> > Gregory,
> > > > > > > > > > > >> > Contractor,
> > > > > > > > > Code
> > > > > > > > > > > >> 7501.1
> > > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > <URL:
> > > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Greg
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > >> > > regarding
> > > > > > > > > > > >> > > MET
> > > > > > > > > > > >> > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Hi Greg. Thank you for passing along
your
> > > > > > > > > > > >> > > config.log
> > > > > > > > > > > >> > > file. I
> > > > > > > > > > see a
> > > > > > > > > > > >> > couple
> > > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Based on those errors, it looks like you
may
> > > > > > > > > > > >> > > not
> > > > > > > > > > > >> > > have
> > > > > > > > > > > >> > > flex
> > > > > > > > > > > >> > > and
> > > > > > > > > > bison
> > > > > > > > > > > >> > > installed. Please install those and try
> > > > > > > > > > > >> > > running
> > > > > > > > > > > >> > > configure
> > > > > > > > > again.
> > > > > > > > > > > >> Please
> > > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Also, I just wanted to address one other
> > > > > > > > > > > >> > > thing.
> > > > > > > > > > > >> > > In
> > > > > > > > > > > >> > > your
> > > > > > > > > original
> > > > > > > > > > > >> email
> > > > > > > > > > > >> > you
> > > > > > > > > > > >> > > listed the following as part of your "MET
> > > > > > > > > > > >> > > Configuration
> > > > > > > > > settings":
> > > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7
-lpthread
> > > > > > > > > > > >> > > -ldl
> > > > > > > > > > > >> > > -lutil
> > > > > > > > > > > >> > > -lm
> > > > > > > > > > -Xlinker
> > > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > However, in your config.log file it looks
> > > > > > > > > > > >> > > like
> > > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > > >> actually
> > > > > > > > > > > >> > > set to be "-L/software/depot/anaconda-
> > > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > > -lpthread
> > > > > > > > > > > >> > -ldl
> > > > > > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic",
which
> > > > > > > > > > > >> > > is
> > > > > > > > > > > >> > > correct
> > > > > > > > > > > >> > > because
> > > > > > > > > you
> > > > > > > > > > > >> need
> > > > > > > > > > > >> > to
> > > > > > > > > > > >> > > have that -L part in there, so I just
want
> > > > > > > > > > > >> > > to
> > > > > > > > > > > >> > > ensure
> > > > > > > > > > > >> > > that
> > > > > > > > > > > >> > > will
> > > > > > > > > > stay
> > > > > > > > > > > >> there
> > > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Thanks,
> > > > > > > > > > > >> > > Julie
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr.
> > > > > > > > > > > >> > > Gregory,
> > > > > > > > > > > >> > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > <URL:
> > > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
> > > > > > > > > > > >> > > > configure.log
> > > > > > > > > > > >> > > > -bash: [ramos at predict: command not
found
> > > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > >> > > > regarding
> > > > > > > > > > > >> > > > MET
> > > > > > > > > > > >> > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > I'll go ahead and assign this ticket to
> > > > > > > > > > > >> > > > Julie,
> > > > > > > > > > > >> > > > and
> > > > > > > > > > > >> > > > she
> > > > > > > > > > > >> > > > should
> > > > > > > > > be
> > > > > > > > > > > >> > writing
> > > > > > > > > > > >> > > > you back in the next couple of days.
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > > >> > > > file you
> > > > > > > > > > > >> > generated
> > > > > > > > > > > >> > > as
> > > > > > > > > > > >> > > > well as the "config.log" file from that
> > > > > > > > > > > >> > > > same
> > > > > > > > > > > >> > > > directory.
> > > > > > > > > > > >> > > > So
> > > > > > > > > > please
> > > > > > > > > > > >> send
> > > > > > > > > > > >> > > > those along when you get a chance.
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > > >> > > > John
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos,
Mr.
> > > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request
90091
> > > > > > > > > > > >> > > > > was
> > > > > > > > > > > >> > > > > acted
> > > > > > > > > > > >> > > > > upon.
> > > > > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
> > > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > > >> > > > > Requestors:
> > > > > > > > > > > >> > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > > Julie helped me compiled 8.0 using
gcc
> > > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > > >> > > > > and
> > > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > > 2.4.0.
> > > > > > > > > > > >> The
> > > > > > > > > > > >> > > user
> > > > > > > > > > > >> > > > > asked for 8.1. I took notes last
time,
> > > > > > > > > > > >> > > > > but
> > > > > > > > > > > >> > > > > running
> > > > > > > > > > > >> > > > > into
> > > > > > > > > > > problems:
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > > >> > > > > export
MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> >
> > > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3
-Wall
> > > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> >
> > > > > > > > > > > >>
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > > >> > > > > export
MET_HDFEOS=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
MET_NETCDF=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > >> > > > > export
> > > > > > > > > MET_CAIROLIB=/software/depot/met-
8.1/external_libs/lib
> > > > > > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7
> > > > > > > > > > > >> > > > > -lpthread
> > > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > > >> > > > > -lm
> > > > > > > > > > > >> -Xlinker
> > > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > > >> > > > > export
MET_GRIB2C=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
MET_SUBDIR=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > >> > > > > export
MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > > > > > >> > > > > ./configure
> > > > > > > > > > > >> > > > > --prefix=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > >> --enable-grib2
> > > > > > > > > > > >> > > > > --enable-modis --enable-mode_graphics
> > > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > > >> > > configure.log
> > > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > > >> > > > > configure returned with non-zero
(127)
> > > > > > > > > > > >> > > > > status
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> >
> > > > > > > > > > > >>
> > > > > > > > > > > >>
> > > > > > > > > > > >>
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Wed May 22 12:45:06 2019
Attached find log file.
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Wednesday, May 22, 2019 11:34 AM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Would you run the same command manually and sen me the output?
cd /software/depot/met-8.1a/met-8.1a/scripts
../src/tools/other/ascii2nc/ascii2nc
../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v 2
(NOTE: the same dcommand but one line instead of multiple lines)
If the command works, would you send me Makefile at the current
directory.
If not working, please run following commands and send me
ascii2nc_test.log.
../src/tools/other/ascii2nc/ascii2nc
../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v 5
-log ascii2nc_test.log
ldd ../src/tools/other/ascii2nc/ascii2nc >> ascii2nc_test.log
Cheers,
Howard
On Wed May 22 11:26:02 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> Attached find my make.log and make_test.log
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Wednesday, May 22, 2019 7:11 AM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> The runntime NetCDF library is decided by LD_LIBRARY_PATH.
> LD_LIBRARY_PATH can be changed by module loading or by user
> configurations. If the problem happens with NetCDF, would you ask
them
> to run this command and check which NetCDF library is loaded?
>
> ldd bin/<MET_tool_name> | grep netcdf
> ldd bin/<MET_tool_name> | grep hdf
>
> for example,
> ldd bin/pb2nc | grep netcdf
> ldd bin/pb2nc | grep hdf
> ldd bin/grid_stat | grep netcdf
> ldd bin/grid_stat | grep hdf
>
> Note: There are dependency between NetCDF4 and HDF5.
>
> Cheers,
> Howard
>
> On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > OK, we have several people who are using the 8.1 version I built.
We
> > use a central location:
> >
> > /software/depot
> >
> > To house all of our software. To be clear, the first build went
OK,
> > it
> > was 'make test' that failed. So the users are using that, but
someone
> > ran into an error today and they asked me about NetCDF. I think it
> > was
> > their setup. The same build was used on two different machines,
one
> > had an error, one didn't.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Tuesday, May 21, 2019 5:50 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > No, external libraries are not changed.
> >
> > Personally, I'm using newer NetCDF library (4.6.x instead of
> > 4.4.1.1).
> >
> > Cheers,
> > Howard
> >
> > On Tue May 21 18:39:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > No, that is not what I am asking. Every time I build, I use your
> > > script which builds everything.
> > >
> > > What I am asking is, did the versions of the external libraries
> > > change?
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Tuesday, May 21, 2019 5:34 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > Yes, the third party libraries should be compiled with newer
> > > version.
> > >
> > > The compile error with gnu 7.3.0 happens with gnu 6.3.0, too.
> > > The fix/patch is not ready officially. One file has to be
> > > corrected
> > > to support newer version gnu compiler. Would you replace
> > > data_line.cc
> > > with attached file or modify it manually?
> > >
> > > Filename:
> > > met-8.1/src/basic/vx_util/data_line.cc
> > >
> > > line 202:
> > >
> > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > >
> > > line 218:
> > >
> > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Tue May 21 18:21:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Did new external libraries need to be built with 8.1?
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, May 16, 2019 4:01 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > Prestopnik
> > > >
> > > > No new tools but many enhancements.
> > > >
> > > > It's available at
> > > > https://dtcenter.org/community-code/model-evaluation-tools-
> > > > met/met-
> > > > version-8-1
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > > On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > Maybe you can answer one question while I try to reinstall
> > > > > everything. What features does 8.1 provide over 8.0?
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > Would try this command at /software/depot/met-8.1/met-
> > > > > 8.1/scripts
> > > > > directory?
> > > > >
> > > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > > echo $LD_LIBRARY_PATH
> > > > >
> > > > > 2. Save LD_LIBRARY_PATH
> > > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > > OR
> > > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > > >
> > > > > 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-
> > > > > 2.4.0/lib
> > > > >
> > > > > 4. Check which libgfortran.so at /software/depot/met-
8.1/met-
> > > > > 8.1/scripts directory.
> > > > >
> > > > > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran OR ldd
> > > > > ../bin/pb2nc | grep libgfortran
> > > > >
> > > > > 5. Check libgfortran version (should be libgfortran.so.3,
not
> > > > > so.4)
> > > > >
> > > > > 6. Run the failed command manually at /software/depot/met-
> > > > > 8.1/met-
> > > > > 8.1/scripts directory if libgfortran.so.3.
> > > > >
> > > > > ../src/tools/other/pb2nc/pb2nc \
> > > > >
> > > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > > \
> > > > > ../out/pb2nc/sample_pb.nc \
> > > > > config/PB2NCConfig_G212 \
> > > > > -v 2
> > > > >
> > > > > 7. Change back LD_LIBRARY_PATH
> > > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > > OR
> > > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > >
> > > > > On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-
grib2-
> > > > > > support
> > > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > (0x0000003453800000)
> > > > > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > > > > > libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> > > > > > libpng16.so.16 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> > > > > > libz.so.1 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > (0x00007f7f19af4000)
> > > > > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > (0x00007f7f198a6000)
> > > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> > > > > > libgsl.so.19 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libgslcblas.so.0
(0x00007f7f18eeb000)
> > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > (0x00007f7f18c99000)
> > > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > (0x00007f7f18b58000)
> > > > > > libgcc_s.so.1 =>
> > > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > > (0x00007f7f18b42000)
> > > > > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
(0x00007f7f18922000)
> > > > > > libhdf5.so.10 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > > > > > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > > > > > [ramos at lorenz bin]$
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > MET is expecting "libpython2.7.so" to enable python
support.
> > > > > >
> > > > > > A log message shows the python was not enabled. Is python
> > > > > > supporting is critical?
> > > > > >
> > > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > > > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > > > > --enable-lidar2nc > configure.log 2>&1
> > > > > >
> > > > > > If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> > > > > > 1. Make sure python is not enabled
> > > > > > no "--enable-python" option for ./configure
> > > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
> > > > > > LD_LIBRARY_PATH at the build time and runtime both.
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > > On Thu May 16 14:17:40 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > > >
> > > > > > > ramos at leo1:~> gcc --version
> > > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright (C) 2017
> > > > > > > Free
> > > > > > > Software Foundation, Inc.
> > > > > > > This is free software; see the source for copying
> > > > > > > conditions.
> > > > > > > There
> > > > > > > is NO
> > > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > > PARTICULAR PURPOSE.
> > > > > > >
> > > > > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC) 7.3.0
> > > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free Software
> > > > > > > Foundation, Inc.
> > > > > > > This is free software; see the source for copying
> > > > > > > conditions.
> > > > > > > There
> > > > > > > is NO
> > > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > > PARTICULAR PURPOSE.
> > > > > > >
> > > > > > > ramos at leo1:~>
> > > > > > >
> > > > > > > We don't have that version on our Red Hat systems. Met
8.0
> > > > > > > worked on RH, but 8.1 failed on the 'make test'. The
user
> > > > > > > says
> > > > > > > she is fine with the executables so far. I will have to
> > > > > > > build
> > > > > > > a
> > > > > > > gfortran 7.x version.
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Hello,
> > > > > > >
> > > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > > >
> > > > > > > The problem was caused by the path for python library
> > > > > > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4
> > > > > > > exists
> > > > > > > there
> > > > > > > from the ldd output. It was used on building MET. MET
was
> > > > > > > compiled
> > > > > > > with gcc 4.4.7 which supports only libgfortran.so.3, and
> > > > > > > linked
> > > > > > > with
> > > > > > > libgfortran.so.4 because of MET_PYTHON_LD configuration.
> > > > > > > Some
> > > > > > > libraries do not support the backward compatibility.
> > > > > > > libgfortran.so
> > > > > > > is
> > > > > > > one of them. In this case, the compiler version and
library
> > > > > > > version
> > > > > > > should match.
> > > > > > >
> > > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
> > > > > > > 8.1/bin/pb2nc
> > > > > > > |grep
> > > > > > > gfortran
> > > > > > > libgfortran.so.4 => /software/depot/anaconda-
> > > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > > >
> > > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-
2.4.0/lib\
> > > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\
> > > > > > > -export-
> > > > > > > dynamic
> > > > > > >
> > > > > > > The solution is compiling third party libraries and MET
> > > > > > > with
> > > > > > > version
> > > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > > > > > libgfortran.so.5,
> > > > > > > So the same problem will happen if MET is built with
> > > > > > > gcc/gfortran
> > > > > > > 6.x
> > > > > > > or gcc/gfortran 8.x.
> > > > > > >
> > > > > > > Cheers,
> > > > > > > Howard
> > > > > > >
> > > > > > > On Mon May 13 18:36:04 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > wrote:
> > > > > > > > Attached is the config.log for NetCDf it shows
> > > > > > > > /usr/bin/gcc
> > > > > > > >
> > > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat
> > > > > > > > version.
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > 8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Thank you. Unfortunately, that does not tell me if
the
> > > > > > > > libraries
> > > > > > > > and
> > > > > > > > the
> > > > > > > > MET code were built with the same version of the
> > > > > > > > compiler.
> > > > > > > > I
> > > > > > > > also
> > > > > > > > do
> > > > > > > > not
> > > > > > > > see bufrlib in that list.
> > > > > > > >
> > > > > > > > Can you please tell me - were the libraries and the
MET
> > > > > > > > code
> > > > > > > > built
> > > > > > > > with the
> > > > > > > > same version of the compiler? I'm checking to see if,
> > > > > > > > for
> > > > > > > > example,
> > > > > > > > the
> > > > > > > > libraries were built with gcc-6.3.0 but the MET code
was
> > > > > > > > build
> > > > > > > > with
> > > > > > > > gcc-4.4.7.
> > > > > > > >
> > > > > > > > Thanks!
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
> > > > > > > > Contractor,
> > > > > > > > Code
> > > > > > > > 7501.1
> > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > <URL:
> > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > > You can see I am using those libraries for MET 8.1:
> > > > > > > > >
> > > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > > /software/depot/anaconda-
2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > > (0x00002ab75e63b000)
> > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > (0x00002ab75e858000)
> > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > > libpng16.so.16 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > (0x00002ab75ec60000)
> > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > (0x00002ab75ee92000)
> > > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > (0x00002ab75f32f000)
> > > > > > > > > libnetcdf.so.11 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > (0x00002ab75f57c000)
> > > > > > > > > libgsl.so.19 =>
> > > > > > > > > /software/depot/met-
8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > > libgslcblas.so.0 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > (0x00002ab75ff37000)
> > > > > > > > > libstdc++.so.6 =>
> > > > > > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > > > > > (0x00002ab760189000)
> > > > > > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > > (0x00002ab7602cb000)
> > > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > > (0x00002ab7602e0000)
> > > > > > > > > /lib64/ld-linux-x86-64.so.2
> > > > > > > > > (0x0000559353f4f000)
> > > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > (0x00002ab760675000)
> > > > > > > > > libhdf5.so.10 =>
> > > > > > > > > /software/depot/met-
8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > (0x00002ab760894000)
> > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > (0x00002ab760d6f000)
> > > > > > > > > [root at maury2 bin]#
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
> > > > > > > > > MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Thank you, Greg. Can you please tell me - were the
> > > > > > > > > libraries
> > > > > > > > > and
> > > > > > > > > the
> > > > > > > > > MET
> > > > > > > > > code built with the same version of the compiler.
I'm
> > > > > > > > > checking
> > > > > > > > > to
> > > > > > > > > see if,
> > > > > > > > > for example, the libraries were built with gcc-6.3.0
> > > > > > > > > but
> > > > > > > > > the
> > > > > > > > > MET
> > > > > > > > > code
> > > > > > > > > was
> > > > > > > > > build with gcc-4.4.7.
> > > > > > > > >
> > > > > > > > > It sounds like we need the libraries and the MET
code
> > > > > > > > > to
> > > > > > > > > be
> > > > > > > > > built
> > > > > > > > > with the
> > > > > > > > > same version of the compiler, in this case.
> > > > > > > > >
> > > > > > > > > Thanks for any information you can provide.
> > > > > > > > >
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
> > > > > > > > > Contractor,
> > > > > > > > > Code
> > > > > > > > > 7501.1
> > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <URL:
> > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > Find the logs attached.
> > > > > > > > > >
> > > > > > > > > > Greg
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > > > MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > Could you please run the following:
> > > > > > > > > >
> > > > > > > > > > which pb2nc
> > > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > > >
> > > > > > > > > > and send me the output?
> > > > > > > > > >
> > > > > > > > > > Please also send your config.log and make.log
file.
> > > > > > > > > >
> > > > > > > > > > Thank you!
> > > > > > > > > >
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr.
Gregory,
> > > > > > > > > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > 7501.1
> > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > <URL:
> > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > I used the buildscript. It should build all of
the
> > > > > > > > > > > external
> > > > > > > > > > > libraries,
> > > > > > > > > so
> > > > > > > > > > > I believe everything was built with the same
> > > > > > > > > > > compiler.
> > > > > > > > > > >
> > > > > > > > > > > Greg
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > regarding
> > > > > > > > > > > MET
> > > > > > > > > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > Prestopnik
> > > > > > > > > > >
> > > > > > > > > > > Hi Greg. Our developer suspects it may be a
> > > > > > > > > > > mismatched
> > > > > > > > > compiler/library
> > > > > > > > > > > version. Was BUFRLIB installed with the same
> > > > > > > > > > > compiler
> > > > > > > > > > > as
> > > > > > > > > > > MET?
> > > > > > > > > > > Also,
> > > > > > > > > > what
> > > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > > >
> > > > > > > > > > > Thanks,
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie
Prestopnik
> > > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > > wrote:
> > > > > > > > > > >
> > > > > > > > > > > > Hi Greg. I am checking in with another
developer
> > > > > > > > > > > > regarding
> > > > > > > > > > > > the
> > > > > > > > > > > > error
> > > > > > > > > > you
> > > > > > > > > > > > experienced. Thank you for your patience.
> > > > > > > > > > > >
> > > > > > > > > > > > Julie
> > > > > > > > > > > >
> > > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr.
> > > > > > > > > > > > Gregory,
> > > > > > > > > > > > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >
> > > > > > > > > > > >>
> > > > > > > > > > > >> <URL:
> > > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> >
> > > > > > > > > > > >>
> > > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > > >>
> > > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > > > > > >> Copyright (C) 2010 Free Software Foundation,
> > > > > > > > > > > >> Inc.
> > > > > > > > > > > >> This is free software; see the source for
> > > > > > > > > > > >> copying
> > > > > > > > > > > >> conditions.
> > > > > > > > > > > >> There
> > > > > > > > > > is
> > > > > > > > > > > NO
> > > > > > > > > > > >> warranty; not even for MERCHANTABILITY or
> > > > > > > > > > > >> FITNESS
> > > > > > > > > > > >> FOR
> > > > > > > > > > > >> A
> > > > > > > > > > > >> PARTICULAR
> > > > > > > > > > > >> PURPOSE.
> > > > > > > > > > > >>
> > > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > > >>
> > > > > > > > > > > >> Not all of the tests passed, please see
> > > > > > > > > > > >> attachment.
> > > > > > > > > > > >>
> > > > > > > > > > > >> Greg
> > > > > > > > > > > >>
> > > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > >> regarding
> > > > > > > > > > > >> MET
> > > > > > > > > > > >> 8.1
> > > > > > > > > > > >> Julie
> > > > > > > > > > > >> Prestopnik
> > > > > > > > > > > >>
> > > > > > > > > > > >> Thank you for letting me know. I will
proceed
> > > > > > > > > > > >> with
> > > > > > > > > > > >> trying
> > > > > > > > > > > >> to
> > > > > > > > > > reproduce
> > > > > > > > > > > >> the
> > > > > > > > > > > >> problem using the gcc-6.3.0. I will follow
up
> > > > > > > > > > > >> once
> > > > > > > > > > > >> I
> > > > > > > > > > > >> have
> > > > > > > > > > > >> more
> > > > > > > > > > > >> information.
> > > > > > > > > > > >>
> > > > > > > > > > > >> Julie
> > > > > > > > > > > >>
> > > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr.
> > > > > > > > > > > >> Gregory,
> > > > > > > > > > > >> Contractor,
> > > > > > > > > > > >> Code
> > > > > > > > > > > 7501.1
> > > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >>
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > <URL:
> > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > When I compiled MET 8.0 the last time, it
> > > > > > > > > > > >> > worked.
> > > > > > > > > > > >> > I
> > > > > > > > > > > >> > was
> > > > > > > > > > > >> > also
> > > > > > > > > > > >> > able
> > > > > > > > > to
> > > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > > >> > Password:
> > > > > > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
> > > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > You are accessing a U.S. Government (USG)
> > > > > > > > > > > >> > Information
> > > > > > > > > > > >> > System
> > > > > > > > > > > >> > (IS)
> > > > > > > > > > that
> > > > > > > > > > > >> is
> > > > > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > > > > >> > By using this IS (which includes any device
> > > > > > > > > > > >> > attached
> > > > > > > > > > > >> > to
> > > > > > > > > > > >> > this
> > > > > > > > > > > >> > IS),
> > > > > > > > > > you
> > > > > > > > > > > >> > consent to the following conditions:
> > > > > > > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > > > > > > >> > communications
> > > > > > > > > > > >> > on
> > > > > > > > > > > >> > this
> > > > > > > > > IS
> > > > > > > > > > > for
> > > > > > > > > > > >> > purposes including, but not limited to,
> > > > > > > > > > > >> > penetration testing, COMSEC monitoring,
> > > > > > > > > > > >> > network
> > > > > > > > > > > >> > operations
> > > > > > > > > > > >> > and
> > > > > > > > > > > defense,
> > > > > > > > > > > >> > personnel misconduct (PM), law enforcement
> > > > > > > > > > > >> > (LE),
> > > > > > > > > > > >> > and counterintelligence (CI)
investigations.
> > > > > > > > > > > >> > -At any time, the USG may inspect and seize
> > > > > > > > > > > >> > data
> > > > > > > > > > > >> > stored
> > > > > > > > > > > >> > on
> > > > > > > > > > > >> > this
> > > > > > > > > IS.
> > > > > > > > > > > >> > -Communications using, or data stored on,
this
> > > > > > > > > > > >> > IS
> > > > > > > > > > > >> > are
> > > > > > > > > > > >> > not
> > > > > > > > > > > >> > private,
> > > > > > > > > > are
> > > > > > > > > > > >> > subject to routine monitoring,
interception,
> > > > > > > > > > > >> > and search, and may be disclosed or used
for
> > > > > > > > > > > >> > any
> > > > > > > > > > > >> > USG-
> > > > > > > > > > > >> > authorized
> > > > > > > > > > > purpose.
> > > > > > > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > > > > > > >> > authentication
> > > > > > > > > > > >> > and
> > > > > > > > > access
> > > > > > > > > > > >> > controls) to protect USG interests -- not
for
> > > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > > >> > -Notwithstanding the above, using this IS
does
> > > > > > > > > > > >> > not
> > > > > > > > > > > >> > constitute
> > > > > > > > > > consent
> > > > > > > > > > > to
> > > > > > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > > > > > >> > monitoring of the content of privileged
> > > > > > > > > > > >> > communications,
> > > > > > > > > > > >> > or
> > > > > > > > > > > >> > work
> > > > > > > > > > > product,
> > > > > > > > > > > >> > related to personal representation or
> > > > > > > > > > > >> > services by attorneys, psychotherapists, or
> > > > > > > > > > > >> > clergy,
> > > > > > > > > > > >> > and
> > > > > > > > > > > >> > their
> > > > > > > > > > > >> assistants.
> > > > > > > > > > > >> > Such communications and work product are
> > > > > > > > > > > >> > private and confidential. See User
Agreement
> > > > > > > > > > > >> > for
> > > > > > > > > > > >> > details.
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > >> > regarding
> > > > > > > > > > > >> > MET
> > > > > > > > > > > >> > 8.1
> > > > > > > > > Julie
> > > > > > > > > > > >> > Prestopnik
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > Hi Gregory. I have not tested with version
> > > > > > > > > > > >> > 6.3.0
> > > > > > > > > > > >> > of
> > > > > > > > > > > >> > the
> > > > > > > > > > > >> > gcc
> > > > > > > > > > compiler,
> > > > > > > > > > > >> but
> > > > > > > > > > > >> > rather only with lower versions
(specifically
> > > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > > >> > We
> > > > > > > > > > > >> > would,
> > > > > > > > > of
> > > > > > > > > > > >> course,
> > > > > > > > > > > >> > want our code to work with higher versions
as
> > > > > > > > > > > >> > well.
> > > > > > > > > > > >> > I
> > > > > > > > > > > >> > have
> > > > > > > > > > > >> > not
> > > > > > > > > yet
> > > > > > > > > > > had
> > > > > > > > > > > >> an
> > > > > > > > > > > >> > opportunity to test with a higher version
like
> > > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > > >> > Do
> > > > > > > > > > > >> > you have
> > > > > > > > > > the
> > > > > > > > > > > >> > ability to compile MET using a lesser
version
> > > > > > > > > > > >> > of
> > > > > > > > > > > >> > the
> > > > > > > > > > > >> > gcc
> > > > > > > > > > > >> > compiler
> > > > > > > > > to
> > > > > > > > > > > >> see if
> > > > > > > > > > > >> > that clears up the issues you are
> > > > > > > > > > > >> > experiencing?
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > Julie
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr.
> > > > > > > > > > > >> > Gregory,
> > > > > > > > > > > >> > Contractor,
> > > > > > > > > Code
> > > > > > > > > > > >> 7501.1
> > > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > <URL:
> > > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Greg
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > >> > > regarding
> > > > > > > > > > > >> > > MET
> > > > > > > > > > > >> > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Hi Greg. Thank you for passing along
your
> > > > > > > > > > > >> > > config.log
> > > > > > > > > > > >> > > file. I
> > > > > > > > > > see a
> > > > > > > > > > > >> > couple
> > > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Based on those errors, it looks like you
may
> > > > > > > > > > > >> > > not
> > > > > > > > > > > >> > > have
> > > > > > > > > > > >> > > flex
> > > > > > > > > > > >> > > and
> > > > > > > > > > bison
> > > > > > > > > > > >> > > installed. Please install those and try
> > > > > > > > > > > >> > > running
> > > > > > > > > > > >> > > configure
> > > > > > > > > again.
> > > > > > > > > > > >> Please
> > > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Also, I just wanted to address one other
> > > > > > > > > > > >> > > thing.
> > > > > > > > > > > >> > > In
> > > > > > > > > > > >> > > your
> > > > > > > > > original
> > > > > > > > > > > >> email
> > > > > > > > > > > >> > you
> > > > > > > > > > > >> > > listed the following as part of your "MET
> > > > > > > > > > > >> > > Configuration
> > > > > > > > > settings":
> > > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7
-lpthread
> > > > > > > > > > > >> > > -ldl
> > > > > > > > > > > >> > > -lutil
> > > > > > > > > > > >> > > -lm
> > > > > > > > > > -Xlinker
> > > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > However, in your config.log file it looks
> > > > > > > > > > > >> > > like
> > > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > > >> actually
> > > > > > > > > > > >> > > set to be "-L/software/depot/anaconda-
> > > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > > -lpthread
> > > > > > > > > > > >> > -ldl
> > > > > > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic",
which
> > > > > > > > > > > >> > > is
> > > > > > > > > > > >> > > correct
> > > > > > > > > > > >> > > because
> > > > > > > > > you
> > > > > > > > > > > >> need
> > > > > > > > > > > >> > to
> > > > > > > > > > > >> > > have that -L part in there, so I just
want
> > > > > > > > > > > >> > > to
> > > > > > > > > > > >> > > ensure
> > > > > > > > > > > >> > > that
> > > > > > > > > > > >> > > will
> > > > > > > > > > stay
> > > > > > > > > > > >> there
> > > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Thanks,
> > > > > > > > > > > >> > > Julie
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr.
> > > > > > > > > > > >> > > Gregory,
> > > > > > > > > > > >> > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > <URL:
> > > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
> > > > > > > > > > > >> > > > configure.log
> > > > > > > > > > > >> > > > -bash: [ramos at predict: command not
found
> > > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > >> > > > regarding
> > > > > > > > > > > >> > > > MET
> > > > > > > > > > > >> > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > I'll go ahead and assign this ticket to
> > > > > > > > > > > >> > > > Julie,
> > > > > > > > > > > >> > > > and
> > > > > > > > > > > >> > > > she
> > > > > > > > > > > >> > > > should
> > > > > > > > > be
> > > > > > > > > > > >> > writing
> > > > > > > > > > > >> > > > you back in the next couple of days.
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > > >> > > > file you
> > > > > > > > > > > >> > generated
> > > > > > > > > > > >> > > as
> > > > > > > > > > > >> > > > well as the "config.log" file from that
> > > > > > > > > > > >> > > > same
> > > > > > > > > > > >> > > > directory.
> > > > > > > > > > > >> > > > So
> > > > > > > > > > please
> > > > > > > > > > > >> send
> > > > > > > > > > > >> > > > those along when you get a chance.
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > > >> > > > John
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos,
Mr.
> > > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request
90091
> > > > > > > > > > > >> > > > > was
> > > > > > > > > > > >> > > > > acted
> > > > > > > > > > > >> > > > > upon.
> > > > > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
> > > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > > >> > > > > Requestors:
> > > > > > > > > > > >> > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > > Julie helped me compiled 8.0 using
gcc
> > > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > > >> > > > > and
> > > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > > 2.4.0.
> > > > > > > > > > > >> The
> > > > > > > > > > > >> > > user
> > > > > > > > > > > >> > > > > asked for 8.1. I took notes last
time,
> > > > > > > > > > > >> > > > > but
> > > > > > > > > > > >> > > > > running
> > > > > > > > > > > >> > > > > into
> > > > > > > > > > > problems:
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > > >> > > > > export
MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> >
> > > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3
-Wall
> > > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> >
> > > > > > > > > > > >>
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > > >> > > > > export
MET_HDFEOS=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
MET_NETCDF=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > >> > > > > export
> > > > > > > > > MET_CAIROLIB=/software/depot/met-
8.1/external_libs/lib
> > > > > > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7
> > > > > > > > > > > >> > > > > -lpthread
> > > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > > >> > > > > -lm
> > > > > > > > > > > >> -Xlinker
> > > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > > >> > > > > export
MET_GRIB2C=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
MET_SUBDIR=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > >> > > > > export
MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > > > > > >> > > > > ./configure
> > > > > > > > > > > >> > > > > --prefix=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > >> --enable-grib2
> > > > > > > > > > > >> > > > > --enable-modis --enable-mode_graphics
> > > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > > >> > > configure.log
> > > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > > >> > > > > configure returned with non-zero
(127)
> > > > > > > > > > > >> > > > > status
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> >
> > > > > > > > > > > >>
> > > > > > > > > > > >>
> > > > > > > > > > > >>
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Wed May 22 12:47:04 2019
Attached is the Makefile, just in case.
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Wednesday, May 22, 2019 11:34 AM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Would you run the same command manually and sen me the output?
cd /software/depot/met-8.1a/met-8.1a/scripts
../src/tools/other/ascii2nc/ascii2nc
../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v 2
(NOTE: the same dcommand but one line instead of multiple lines)
If the command works, would you send me Makefile at the current
directory.
If not working, please run following commands and send me
ascii2nc_test.log.
../src/tools/other/ascii2nc/ascii2nc
../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v 5
-log ascii2nc_test.log
ldd ../src/tools/other/ascii2nc/ascii2nc >> ascii2nc_test.log
Cheers,
Howard
On Wed May 22 11:26:02 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> Attached find my make.log and make_test.log
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Wednesday, May 22, 2019 7:11 AM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> The runntime NetCDF library is decided by LD_LIBRARY_PATH.
> LD_LIBRARY_PATH can be changed by module loading or by user
> configurations. If the problem happens with NetCDF, would you ask
them
> to run this command and check which NetCDF library is loaded?
>
> ldd bin/<MET_tool_name> | grep netcdf
> ldd bin/<MET_tool_name> | grep hdf
>
> for example,
> ldd bin/pb2nc | grep netcdf
> ldd bin/pb2nc | grep hdf
> ldd bin/grid_stat | grep netcdf
> ldd bin/grid_stat | grep hdf
>
> Note: There are dependency between NetCDF4 and HDF5.
>
> Cheers,
> Howard
>
> On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > OK, we have several people who are using the 8.1 version I built.
We
> > use a central location:
> >
> > /software/depot
> >
> > To house all of our software. To be clear, the first build went
OK,
> > it
> > was 'make test' that failed. So the users are using that, but
someone
> > ran into an error today and they asked me about NetCDF. I think it
> > was
> > their setup. The same build was used on two different machines,
one
> > had an error, one didn't.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Tuesday, May 21, 2019 5:50 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > No, external libraries are not changed.
> >
> > Personally, I'm using newer NetCDF library (4.6.x instead of
> > 4.4.1.1).
> >
> > Cheers,
> > Howard
> >
> > On Tue May 21 18:39:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > No, that is not what I am asking. Every time I build, I use your
> > > script which builds everything.
> > >
> > > What I am asking is, did the versions of the external libraries
> > > change?
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Tuesday, May 21, 2019 5:34 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > Yes, the third party libraries should be compiled with newer
> > > version.
> > >
> > > The compile error with gnu 7.3.0 happens with gnu 6.3.0, too.
> > > The fix/patch is not ready officially. One file has to be
> > > corrected
> > > to support newer version gnu compiler. Would you replace
> > > data_line.cc
> > > with attached file or modify it manually?
> > >
> > > Filename:
> > > met-8.1/src/basic/vx_util/data_line.cc
> > >
> > > line 202:
> > >
> > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > >
> > > line 218:
> > >
> > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Tue May 21 18:21:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Did new external libraries need to be built with 8.1?
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Thursday, May 16, 2019 4:01 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > Prestopnik
> > > >
> > > > No new tools but many enhancements.
> > > >
> > > > It's available at
> > > > https://dtcenter.org/community-code/model-evaluation-tools-
> > > > met/met-
> > > > version-8-1
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > > On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > Maybe you can answer one question while I try to reinstall
> > > > > everything. What features does 8.1 provide over 8.0?
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > Would try this command at /software/depot/met-8.1/met-
> > > > > 8.1/scripts
> > > > > directory?
> > > > >
> > > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > > echo $LD_LIBRARY_PATH
> > > > >
> > > > > 2. Save LD_LIBRARY_PATH
> > > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > > OR
> > > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > > >
> > > > > 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-
> > > > > 2.4.0/lib
> > > > >
> > > > > 4. Check which libgfortran.so at /software/depot/met-
8.1/met-
> > > > > 8.1/scripts directory.
> > > > >
> > > > > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran OR ldd
> > > > > ../bin/pb2nc | grep libgfortran
> > > > >
> > > > > 5. Check libgfortran version (should be libgfortran.so.3,
not
> > > > > so.4)
> > > > >
> > > > > 6. Run the failed command manually at /software/depot/met-
> > > > > 8.1/met-
> > > > > 8.1/scripts directory if libgfortran.so.3.
> > > > >
> > > > > ../src/tools/other/pb2nc/pb2nc \
> > > > >
> > > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > > \
> > > > > ../out/pb2nc/sample_pb.nc \
> > > > > config/PB2NCConfig_G212 \
> > > > > -v 2
> > > > >
> > > > > 7. Change back LD_LIBRARY_PATH
> > > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > > OR
> > > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > >
> > > > > On Thu May 16 15:28:16 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-
grib2-
> > > > > > support
> > > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > (0x0000003453800000)
> > > > > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > > > > > libutil.so.1 => /lib64/libutil.so.1 (0x0000003455800000)
> > > > > > libpng16.so.16 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libpng16.so.16 (0x00007f7f19d0c000)
> > > > > > libz.so.1 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > (0x00007f7f19af4000)
> > > > > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > (0x00007f7f198a6000)
> > > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libnetcdf.so.11 (0x00007f7f19567000)
> > > > > > libgsl.so.19 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libgslcblas.so.0
(0x00007f7f18eeb000)
> > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > (0x00007f7f18c99000)
> > > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > (0x00007f7f18b58000)
> > > > > > libgcc_s.so.1 =>
> > > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > > (0x00007f7f18b42000)
> > > > > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
(0x00007f7f18922000)
> > > > > > libhdf5.so.10 => /software/depot/met-
> > > > > > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > > > > > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > > > > > [ramos at lorenz bin]$
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > MET is expecting "libpython2.7.so" to enable python
support.
> > > > > >
> > > > > > A log message shows the python was not enabled. Is python
> > > > > > supporting is critical?
> > > > > >
> > > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > > > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > > > > --enable-lidar2nc > configure.log 2>&1
> > > > > >
> > > > > > If not, you can build/run MET 8.1 with gcc/gfortran 4.4.7.
> > > > > > 1. Make sure python is not enabled
> > > > > > no "--enable-python" option for ./configure
> > > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
> > > > > > LD_LIBRARY_PATH at the build time and runtime both.
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > > On Thu May 16 14:17:40 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > > >
> > > > > > > ramos at leo1:~> gcc --version
> > > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright (C) 2017
> > > > > > > Free
> > > > > > > Software Foundation, Inc.
> > > > > > > This is free software; see the source for copying
> > > > > > > conditions.
> > > > > > > There
> > > > > > > is NO
> > > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > > PARTICULAR PURPOSE.
> > > > > > >
> > > > > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC) 7.3.0
> > > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free Software
> > > > > > > Foundation, Inc.
> > > > > > > This is free software; see the source for copying
> > > > > > > conditions.
> > > > > > > There
> > > > > > > is NO
> > > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR A
> > > > > > > PARTICULAR PURPOSE.
> > > > > > >
> > > > > > > ramos at leo1:~>
> > > > > > >
> > > > > > > We don't have that version on our Red Hat systems. Met
8.0
> > > > > > > worked on RH, but 8.1 failed on the 'make test'. The
user
> > > > > > > says
> > > > > > > she is fine with the executables so far. I will have to
> > > > > > > build
> > > > > > > a
> > > > > > > gfortran 7.x version.
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Hello,
> > > > > > >
> > > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > > >
> > > > > > > The problem was caused by the path for python library
> > > > > > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4
> > > > > > > exists
> > > > > > > there
> > > > > > > from the ldd output. It was used on building MET. MET
was
> > > > > > > compiled
> > > > > > > with gcc 4.4.7 which supports only libgfortran.so.3, and
> > > > > > > linked
> > > > > > > with
> > > > > > > libgfortran.so.4 because of MET_PYTHON_LD configuration.
> > > > > > > Some
> > > > > > > libraries do not support the backward compatibility.
> > > > > > > libgfortran.so
> > > > > > > is
> > > > > > > one of them. In this case, the compiler version and
library
> > > > > > > version
> > > > > > > should match.
> > > > > > >
> > > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
> > > > > > > 8.1/bin/pb2nc
> > > > > > > |grep
> > > > > > > gfortran
> > > > > > > libgfortran.so.4 => /software/depot/anaconda-
> > > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > > >
> > > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-
2.4.0/lib\
> > > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\
> > > > > > > -export-
> > > > > > > dynamic
> > > > > > >
> > > > > > > The solution is compiling third party libraries and MET
> > > > > > > with
> > > > > > > version
> > > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > > > > > libgfortran.so.5,
> > > > > > > So the same problem will happen if MET is built with
> > > > > > > gcc/gfortran
> > > > > > > 6.x
> > > > > > > or gcc/gfortran 8.x.
> > > > > > >
> > > > > > > Cheers,
> > > > > > > Howard
> > > > > > >
> > > > > > > On Mon May 13 18:36:04 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > wrote:
> > > > > > > > Attached is the config.log for NetCDf it shows
> > > > > > > > /usr/bin/gcc
> > > > > > > >
> > > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat
> > > > > > > > version.
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Julie Prestopnik via RT
[mailto:met_help at ucar.edu]
> > > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > 8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Thank you. Unfortunately, that does not tell me if
the
> > > > > > > > libraries
> > > > > > > > and
> > > > > > > > the
> > > > > > > > MET code were built with the same version of the
> > > > > > > > compiler.
> > > > > > > > I
> > > > > > > > also
> > > > > > > > do
> > > > > > > > not
> > > > > > > > see bufrlib in that list.
> > > > > > > >
> > > > > > > > Can you please tell me - were the libraries and the
MET
> > > > > > > > code
> > > > > > > > built
> > > > > > > > with the
> > > > > > > > same version of the compiler? I'm checking to see if,
> > > > > > > > for
> > > > > > > > example,
> > > > > > > > the
> > > > > > > > libraries were built with gcc-6.3.0 but the MET code
was
> > > > > > > > build
> > > > > > > > with
> > > > > > > > gcc-4.4.7.
> > > > > > > >
> > > > > > > > Thanks!
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
> > > > > > > > Contractor,
> > > > > > > > Code
> > > > > > > > 7501.1
> > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > <URL:
> > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > > You can see I am using those libraries for MET 8.1:
> > > > > > > > >
> > > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > > /software/depot/anaconda-
2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > > (0x00002ab75e63b000)
> > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > (0x00002ab75e858000)
> > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > > libpng16.so.16 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > (0x00002ab75ec60000)
> > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > (0x00002ab75ee92000)
> > > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > (0x00002ab75f32f000)
> > > > > > > > > libnetcdf.so.11 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > (0x00002ab75f57c000)
> > > > > > > > > libgsl.so.19 =>
> > > > > > > > > /software/depot/met-
8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > > libgslcblas.so.0 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > (0x00002ab75ff37000)
> > > > > > > > > libstdc++.so.6 =>
> > > > > > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > > > > > (0x00002ab760189000)
> > > > > > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > > (0x00002ab7602cb000)
> > > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > > (0x00002ab7602e0000)
> > > > > > > > > /lib64/ld-linux-x86-64.so.2
> > > > > > > > > (0x0000559353f4f000)
> > > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > (0x00002ab760675000)
> > > > > > > > > libhdf5.so.10 =>
> > > > > > > > > /software/depot/met-
8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > (0x00002ab760894000)
> > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > (0x00002ab760d6f000)
> > > > > > > > > [root at maury2 bin]#
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
> > > > > > > > > MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Thank you, Greg. Can you please tell me - were the
> > > > > > > > > libraries
> > > > > > > > > and
> > > > > > > > > the
> > > > > > > > > MET
> > > > > > > > > code built with the same version of the compiler.
I'm
> > > > > > > > > checking
> > > > > > > > > to
> > > > > > > > > see if,
> > > > > > > > > for example, the libraries were built with gcc-6.3.0
> > > > > > > > > but
> > > > > > > > > the
> > > > > > > > > MET
> > > > > > > > > code
> > > > > > > > > was
> > > > > > > > > build with gcc-4.4.7.
> > > > > > > > >
> > > > > > > > > It sounds like we need the libraries and the MET
code
> > > > > > > > > to
> > > > > > > > > be
> > > > > > > > > built
> > > > > > > > > with the
> > > > > > > > > same version of the compiler, in this case.
> > > > > > > > >
> > > > > > > > > Thanks for any information you can provide.
> > > > > > > > >
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr. Gregory,
> > > > > > > > > Contractor,
> > > > > > > > > Code
> > > > > > > > > 7501.1
> > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <URL:
> > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > Find the logs attached.
> > > > > > > > > >
> > > > > > > > > > Greg
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > > > MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > Could you please run the following:
> > > > > > > > > >
> > > > > > > > > > which pb2nc
> > > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > > >
> > > > > > > > > > and send me the output?
> > > > > > > > > >
> > > > > > > > > > Please also send your config.log and make.log
file.
> > > > > > > > > >
> > > > > > > > > > Thank you!
> > > > > > > > > >
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr.
Gregory,
> > > > > > > > > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > 7501.1
> > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > <URL:
> > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > I used the buildscript. It should build all of
the
> > > > > > > > > > > external
> > > > > > > > > > > libraries,
> > > > > > > > > so
> > > > > > > > > > > I believe everything was built with the same
> > > > > > > > > > > compiler.
> > > > > > > > > > >
> > > > > > > > > > > Greg
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > regarding
> > > > > > > > > > > MET
> > > > > > > > > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > Prestopnik
> > > > > > > > > > >
> > > > > > > > > > > Hi Greg. Our developer suspects it may be a
> > > > > > > > > > > mismatched
> > > > > > > > > compiler/library
> > > > > > > > > > > version. Was BUFRLIB installed with the same
> > > > > > > > > > > compiler
> > > > > > > > > > > as
> > > > > > > > > > > MET?
> > > > > > > > > > > Also,
> > > > > > > > > > what
> > > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > > >
> > > > > > > > > > > Thanks,
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie
Prestopnik
> > > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > > wrote:
> > > > > > > > > > >
> > > > > > > > > > > > Hi Greg. I am checking in with another
developer
> > > > > > > > > > > > regarding
> > > > > > > > > > > > the
> > > > > > > > > > > > error
> > > > > > > > > > you
> > > > > > > > > > > > experienced. Thank you for your patience.
> > > > > > > > > > > >
> > > > > > > > > > > > Julie
> > > > > > > > > > > >
> > > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr.
> > > > > > > > > > > > Gregory,
> > > > > > > > > > > > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >
> > > > > > > > > > > >>
> > > > > > > > > > > >> <URL:
> > > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> >
> > > > > > > > > > > >>
> > > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > > >>
> > > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > > > > > >> Copyright (C) 2010 Free Software Foundation,
> > > > > > > > > > > >> Inc.
> > > > > > > > > > > >> This is free software; see the source for
> > > > > > > > > > > >> copying
> > > > > > > > > > > >> conditions.
> > > > > > > > > > > >> There
> > > > > > > > > > is
> > > > > > > > > > > NO
> > > > > > > > > > > >> warranty; not even for MERCHANTABILITY or
> > > > > > > > > > > >> FITNESS
> > > > > > > > > > > >> FOR
> > > > > > > > > > > >> A
> > > > > > > > > > > >> PARTICULAR
> > > > > > > > > > > >> PURPOSE.
> > > > > > > > > > > >>
> > > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > > >>
> > > > > > > > > > > >> Not all of the tests passed, please see
> > > > > > > > > > > >> attachment.
> > > > > > > > > > > >>
> > > > > > > > > > > >> Greg
> > > > > > > > > > > >>
> > > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > >> regarding
> > > > > > > > > > > >> MET
> > > > > > > > > > > >> 8.1
> > > > > > > > > > > >> Julie
> > > > > > > > > > > >> Prestopnik
> > > > > > > > > > > >>
> > > > > > > > > > > >> Thank you for letting me know. I will
proceed
> > > > > > > > > > > >> with
> > > > > > > > > > > >> trying
> > > > > > > > > > > >> to
> > > > > > > > > > reproduce
> > > > > > > > > > > >> the
> > > > > > > > > > > >> problem using the gcc-6.3.0. I will follow
up
> > > > > > > > > > > >> once
> > > > > > > > > > > >> I
> > > > > > > > > > > >> have
> > > > > > > > > > > >> more
> > > > > > > > > > > >> information.
> > > > > > > > > > > >>
> > > > > > > > > > > >> Julie
> > > > > > > > > > > >>
> > > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr.
> > > > > > > > > > > >> Gregory,
> > > > > > > > > > > >> Contractor,
> > > > > > > > > > > >> Code
> > > > > > > > > > > 7501.1
> > > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >>
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > <URL:
> > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > When I compiled MET 8.0 the last time, it
> > > > > > > > > > > >> > worked.
> > > > > > > > > > > >> > I
> > > > > > > > > > > >> > was
> > > > > > > > > > > >> > also
> > > > > > > > > > > >> > able
> > > > > > > > > to
> > > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > > >> > Password:
> > > > > > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
> > > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > You are accessing a U.S. Government (USG)
> > > > > > > > > > > >> > Information
> > > > > > > > > > > >> > System
> > > > > > > > > > > >> > (IS)
> > > > > > > > > > that
> > > > > > > > > > > >> is
> > > > > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > > > > >> > By using this IS (which includes any device
> > > > > > > > > > > >> > attached
> > > > > > > > > > > >> > to
> > > > > > > > > > > >> > this
> > > > > > > > > > > >> > IS),
> > > > > > > > > > you
> > > > > > > > > > > >> > consent to the following conditions:
> > > > > > > > > > > >> > -The USG routinely intercepts and monitors
> > > > > > > > > > > >> > communications
> > > > > > > > > > > >> > on
> > > > > > > > > > > >> > this
> > > > > > > > > IS
> > > > > > > > > > > for
> > > > > > > > > > > >> > purposes including, but not limited to,
> > > > > > > > > > > >> > penetration testing, COMSEC monitoring,
> > > > > > > > > > > >> > network
> > > > > > > > > > > >> > operations
> > > > > > > > > > > >> > and
> > > > > > > > > > > defense,
> > > > > > > > > > > >> > personnel misconduct (PM), law enforcement
> > > > > > > > > > > >> > (LE),
> > > > > > > > > > > >> > and counterintelligence (CI)
investigations.
> > > > > > > > > > > >> > -At any time, the USG may inspect and seize
> > > > > > > > > > > >> > data
> > > > > > > > > > > >> > stored
> > > > > > > > > > > >> > on
> > > > > > > > > > > >> > this
> > > > > > > > > IS.
> > > > > > > > > > > >> > -Communications using, or data stored on,
this
> > > > > > > > > > > >> > IS
> > > > > > > > > > > >> > are
> > > > > > > > > > > >> > not
> > > > > > > > > > > >> > private,
> > > > > > > > > > are
> > > > > > > > > > > >> > subject to routine monitoring,
interception,
> > > > > > > > > > > >> > and search, and may be disclosed or used
for
> > > > > > > > > > > >> > any
> > > > > > > > > > > >> > USG-
> > > > > > > > > > > >> > authorized
> > > > > > > > > > > purpose.
> > > > > > > > > > > >> > -This IS includes security measures (e.g.,
> > > > > > > > > > > >> > authentication
> > > > > > > > > > > >> > and
> > > > > > > > > access
> > > > > > > > > > > >> > controls) to protect USG interests -- not
for
> > > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > > >> > -Notwithstanding the above, using this IS
does
> > > > > > > > > > > >> > not
> > > > > > > > > > > >> > constitute
> > > > > > > > > > consent
> > > > > > > > > > > to
> > > > > > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > > > > > >> > monitoring of the content of privileged
> > > > > > > > > > > >> > communications,
> > > > > > > > > > > >> > or
> > > > > > > > > > > >> > work
> > > > > > > > > > > product,
> > > > > > > > > > > >> > related to personal representation or
> > > > > > > > > > > >> > services by attorneys, psychotherapists, or
> > > > > > > > > > > >> > clergy,
> > > > > > > > > > > >> > and
> > > > > > > > > > > >> > their
> > > > > > > > > > > >> assistants.
> > > > > > > > > > > >> > Such communications and work product are
> > > > > > > > > > > >> > private and confidential. See User
Agreement
> > > > > > > > > > > >> > for
> > > > > > > > > > > >> > details.
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > >> > regarding
> > > > > > > > > > > >> > MET
> > > > > > > > > > > >> > 8.1
> > > > > > > > > Julie
> > > > > > > > > > > >> > Prestopnik
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > Hi Gregory. I have not tested with version
> > > > > > > > > > > >> > 6.3.0
> > > > > > > > > > > >> > of
> > > > > > > > > > > >> > the
> > > > > > > > > > > >> > gcc
> > > > > > > > > > compiler,
> > > > > > > > > > > >> but
> > > > > > > > > > > >> > rather only with lower versions
(specifically
> > > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > > >> > We
> > > > > > > > > > > >> > would,
> > > > > > > > > of
> > > > > > > > > > > >> course,
> > > > > > > > > > > >> > want our code to work with higher versions
as
> > > > > > > > > > > >> > well.
> > > > > > > > > > > >> > I
> > > > > > > > > > > >> > have
> > > > > > > > > > > >> > not
> > > > > > > > > yet
> > > > > > > > > > > had
> > > > > > > > > > > >> an
> > > > > > > > > > > >> > opportunity to test with a higher version
like
> > > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > > >> > Do
> > > > > > > > > > > >> > you have
> > > > > > > > > > the
> > > > > > > > > > > >> > ability to compile MET using a lesser
version
> > > > > > > > > > > >> > of
> > > > > > > > > > > >> > the
> > > > > > > > > > > >> > gcc
> > > > > > > > > > > >> > compiler
> > > > > > > > > to
> > > > > > > > > > > >> see if
> > > > > > > > > > > >> > that clears up the issues you are
> > > > > > > > > > > >> > experiencing?
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > Julie
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos, Mr.
> > > > > > > > > > > >> > Gregory,
> > > > > > > > > > > >> > Contractor,
> > > > > > > > > Code
> > > > > > > > > > > >> 7501.1
> > > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >> >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > <URL:
> > > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Greg
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > >> > > regarding
> > > > > > > > > > > >> > > MET
> > > > > > > > > > > >> > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Hi Greg. Thank you for passing along
your
> > > > > > > > > > > >> > > config.log
> > > > > > > > > > > >> > > file. I
> > > > > > > > > > see a
> > > > > > > > > > > >> > couple
> > > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Based on those errors, it looks like you
may
> > > > > > > > > > > >> > > not
> > > > > > > > > > > >> > > have
> > > > > > > > > > > >> > > flex
> > > > > > > > > > > >> > > and
> > > > > > > > > > bison
> > > > > > > > > > > >> > > installed. Please install those and try
> > > > > > > > > > > >> > > running
> > > > > > > > > > > >> > > configure
> > > > > > > > > again.
> > > > > > > > > > > >> Please
> > > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Also, I just wanted to address one other
> > > > > > > > > > > >> > > thing.
> > > > > > > > > > > >> > > In
> > > > > > > > > > > >> > > your
> > > > > > > > > original
> > > > > > > > > > > >> email
> > > > > > > > > > > >> > you
> > > > > > > > > > > >> > > listed the following as part of your "MET
> > > > > > > > > > > >> > > Configuration
> > > > > > > > > settings":
> > > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7
-lpthread
> > > > > > > > > > > >> > > -ldl
> > > > > > > > > > > >> > > -lutil
> > > > > > > > > > > >> > > -lm
> > > > > > > > > > -Xlinker
> > > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > However, in your config.log file it looks
> > > > > > > > > > > >> > > like
> > > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > > >> actually
> > > > > > > > > > > >> > > set to be "-L/software/depot/anaconda-
> > > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > > -lpthread
> > > > > > > > > > > >> > -ldl
> > > > > > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic",
which
> > > > > > > > > > > >> > > is
> > > > > > > > > > > >> > > correct
> > > > > > > > > > > >> > > because
> > > > > > > > > you
> > > > > > > > > > > >> need
> > > > > > > > > > > >> > to
> > > > > > > > > > > >> > > have that -L part in there, so I just
want
> > > > > > > > > > > >> > > to
> > > > > > > > > > > >> > > ensure
> > > > > > > > > > > >> > > that
> > > > > > > > > > > >> > > will
> > > > > > > > > > stay
> > > > > > > > > > > >> there
> > > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > Thanks,
> > > > > > > > > > > >> > > Julie
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos, Mr.
> > > > > > > > > > > >> > > Gregory,
> > > > > > > > > > > >> > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > <URL:
> > > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
> > > > > > > > > > > >> > > > configure.log
> > > > > > > > > > > >> > > > -bash: [ramos at predict: command not
found
> > > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > >> > > > regarding
> > > > > > > > > > > >> > > > MET
> > > > > > > > > > > >> > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > I'll go ahead and assign this ticket to
> > > > > > > > > > > >> > > > Julie,
> > > > > > > > > > > >> > > > and
> > > > > > > > > > > >> > > > she
> > > > > > > > > > > >> > > > should
> > > > > > > > > be
> > > > > > > > > > > >> > writing
> > > > > > > > > > > >> > > > you back in the next couple of days.
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > > >> > > > file you
> > > > > > > > > > > >> > generated
> > > > > > > > > > > >> > > as
> > > > > > > > > > > >> > > > well as the "config.log" file from that
> > > > > > > > > > > >> > > > same
> > > > > > > > > > > >> > > > directory.
> > > > > > > > > > > >> > > > So
> > > > > > > > > > please
> > > > > > > > > > > >> send
> > > > > > > > > > > >> > > > those along when you get a chance.
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > > >> > > > John
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos,
Mr.
> > > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request
90091
> > > > > > > > > > > >> > > > > was
> > > > > > > > > > > >> > > > > acted
> > > > > > > > > > > >> > > > > upon.
> > > > > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > > >> > > > > Subject: Help regarding MET 8.1 Julie
> > > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > > >> > > > > Requestors:
> > > > > > > > > > > >> > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > > Julie helped me compiled 8.0 using
gcc
> > > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > > >> > > > > and
> > > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > > 2.4.0.
> > > > > > > > > > > >> The
> > > > > > > > > > > >> > > user
> > > > > > > > > > > >> > > > > asked for 8.1. I took notes last
time,
> > > > > > > > > > > >> > > > > but
> > > > > > > > > > > >> > > > > running
> > > > > > > > > > > >> > > > > into
> > > > > > > > > > > problems:
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > > >> > > > > export
MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> >
> > > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3
-Wall
> > > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> >
> > > > > > > > > > > >>
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > > >> > > > > export
MET_HDFEOS=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
MET_NETCDF=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
> > > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > >> > > > > export
> > > > > > > > > MET_CAIROLIB=/software/depot/met-
8.1/external_libs/lib
> > > > > > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7
> > > > > > > > > > > >> > > > > -lpthread
> > > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > > >> > > > > -lm
> > > > > > > > > > > >> -Xlinker
> > > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > > >> > > > > export
MET_GRIB2C=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > >> > > > > export
MET_SUBDIR=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > >> > > > > export
MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > > > > > >> > > > > ./configure
> > > > > > > > > > > >> > > > > --prefix=/software/depot/met-
> > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > >> --enable-grib2
> > > > > > > > > > > >> > > > > --enable-modis --enable-mode_graphics
> > > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > > >> > > configure.log
> > > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > > >> > > > > configure returned with non-zero
(127)
> > > > > > > > > > > >> > > > > status
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> > >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> >
> > > > > > > > > > > >> >
> > > > > > > > > > > >>
> > > > > > > > > > > >>
> > > > > > > > > > > >>
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Howard Soh
Time: Wed May 22 18:38:25 2019
I'm sorry that MET code is not ready for newer GNU compiler. The error
with "make test" was caused by changed APIs from newer gnu compiler. I
fixed it for ascii2nc locally with updating two files. I tried few MET
tools and found more than 10 files should be updated.
I think it's beyond helpdesk work. It's better to support the newer
version GNU compiler with next release.
Cheers,
Howard
On Wed May 22 12:47:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> Attached is the Makefile, just in case.
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Wednesday, May 22, 2019 11:34 AM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Would you run the same command manually and sen me the output?
>
> cd /software/depot/met-8.1a/met-8.1a/scripts
> ../src/tools/other/ascii2nc/ascii2nc
> ../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v 2
> (NOTE: the same dcommand but one line instead of multiple lines)
>
> If the command works, would you send me Makefile at the current
> directory.
> If not working, please run following commands and send me
> ascii2nc_test.log.
>
> ../src/tools/other/ascii2nc/ascii2nc
> ../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v 5
> -log ascii2nc_test.log
>
> ldd ../src/tools/other/ascii2nc/ascii2nc >> ascii2nc_test.log
>
>
> Cheers,
> Howard
>
>
> On Wed May 22 11:26:02 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > Attached find my make.log and make_test.log
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Wednesday, May 22, 2019 7:11 AM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > The runntime NetCDF library is decided by LD_LIBRARY_PATH.
> > LD_LIBRARY_PATH can be changed by module loading or by user
> > configurations. If the problem happens with NetCDF, would you ask
> > them
> > to run this command and check which NetCDF library is loaded?
> >
> > ldd bin/<MET_tool_name> | grep netcdf
> > ldd bin/<MET_tool_name> | grep hdf
> >
> > for example,
> > ldd bin/pb2nc | grep netcdf
> > ldd bin/pb2nc | grep hdf
> > ldd bin/grid_stat | grep netcdf
> > ldd bin/grid_stat | grep hdf
> >
> > Note: There are dependency between NetCDF4 and HDF5.
> >
> > Cheers,
> > Howard
> >
> > On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > OK, we have several people who are using the 8.1 version I
built.
> > > We
> > > use a central location:
> > >
> > > /software/depot
> > >
> > > To house all of our software. To be clear, the first build went
OK,
> > > it
> > > was 'make test' that failed. So the users are using that, but
> > > someone
> > > ran into an error today and they asked me about NetCDF. I think
it
> > > was
> > > their setup. The same build was used on two different machines,
> > > one
> > > had an error, one didn't.
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Tuesday, May 21, 2019 5:50 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > No, external libraries are not changed.
> > >
> > > Personally, I'm using newer NetCDF library (4.6.x instead of
> > > 4.4.1.1).
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Tue May 21 18:39:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > No, that is not what I am asking. Every time I build, I use
your
> > > > script which builds everything.
> > > >
> > > > What I am asking is, did the versions of the external
libraries
> > > > change?
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Tuesday, May 21, 2019 5:34 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > > Prestopnik
> > > >
> > > > Yes, the third party libraries should be compiled with newer
> > > > version.
> > > >
> > > > The compile error with gnu 7.3.0 happens with gnu 6.3.0, too.
> > > > The fix/patch is not ready officially. One file has to be
> > > > corrected
> > > > to support newer version gnu compiler. Would you replace
> > > > data_line.cc
> > > > with attached file or modify it manually?
> > > >
> > > > Filename:
> > > > met-8.1/src/basic/vx_util/data_line.cc
> > > >
> > > > line 202:
> > > >
> > > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > > >
> > > > line 218:
> > > >
> > > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > > On Tue May 21 18:21:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > Did new external libraries need to be built with 8.1?
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, May 16, 2019 4:01 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > No new tools but many enhancements.
> > > > >
> > > > > It's available at
> > > > > https://dtcenter.org/community-code/model-evaluation-tools-
> > > > > met/met-
> > > > > version-8-1
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > > On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > Maybe you can answer one question while I try to
reinstall
> > > > > > everything. What features does 8.1 provide over 8.0?
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Would try this command at /software/depot/met-8.1/met-
> > > > > > 8.1/scripts
> > > > > > directory?
> > > > > >
> > > > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > > > echo $LD_LIBRARY_PATH
> > > > > >
> > > > > > 2. Save LD_LIBRARY_PATH
> > > > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > > > OR
> > > > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > > > >
> > > > > > 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-
> > > > > > 2.4.0/lib
> > > > > >
> > > > > > 4. Check which libgfortran.so at /software/depot/met-
8.1/met-
> > > > > > 8.1/scripts directory.
> > > > > >
> > > > > > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran OR
ldd
> > > > > > ../bin/pb2nc | grep libgfortran
> > > > > >
> > > > > > 5. Check libgfortran version (should be libgfortran.so.3,
not
> > > > > > so.4)
> > > > > >
> > > > > > 6. Run the failed command manually at /software/depot/met-
> > > > > > 8.1/met-
> > > > > > 8.1/scripts directory if libgfortran.so.3.
> > > > > >
> > > > > > ../src/tools/other/pb2nc/pb2nc \
> > > > > >
> > > > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > > > \
> > > > > > ../out/pb2nc/sample_pb.nc \
> > > > > > config/PB2NCConfig_G212 \
> > > > > > -v 2
> > > > > >
> > > > > > 7. Change back LD_LIBRARY_PATH
> > > > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > > > OR
> > > > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > >
> > > > > > On Thu May 16 15:28:16 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-
grib2-
> > > > > > > support
> > > > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > (0x0000003453800000)
> > > > > > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > > > > > > libutil.so.1 => /lib64/libutil.so.1
(0x0000003455800000)
> > > > > > > libpng16.so.16 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libpng16.so.16
(0x00007f7f19d0c000)
> > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > (0x00007f7f19af4000)
> > > > > > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > (0x00007f7f198a6000)
> > > > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
(0x00007f7f19567000)
> > > > > > > libgsl.so.19 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > > > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
(0x00007f7f18eeb000)
> > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > (0x00007f7f18c99000)
> > > > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > > (0x00007f7f18b58000)
> > > > > > > libgcc_s.so.1 =>
> > > > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > > > (0x00007f7f18b42000)
> > > > > > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
(0x00007f7f18922000)
> > > > > > > libhdf5.so.10 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > > > > > > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > > > > > > [ramos at lorenz bin]$
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > MET is expecting "libpython2.7.so" to enable python
> > > > > > > support.
> > > > > > >
> > > > > > > A log message shows the python was not enabled. Is
python
> > > > > > > supporting is critical?
> > > > > > >
> > > > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > > > > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > > > > > --enable-lidar2nc > configure.log 2>&1
> > > > > > >
> > > > > > > If not, you can build/run MET 8.1 with gcc/gfortran
4.4.7.
> > > > > > > 1. Make sure python is not enabled
> > > > > > > no "--enable-python" option for ./configure
> > > > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
> > > > > > > LD_LIBRARY_PATH at the build time and runtime both.
> > > > > > >
> > > > > > > Cheers,
> > > > > > > Howard
> > > > > > >
> > > > > > > On Thu May 16 14:17:40 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > wrote:
> > > > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > > > >
> > > > > > > > ramos at leo1:~> gcc --version
> > > > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright (C)
2017
> > > > > > > > Free
> > > > > > > > Software Foundation, Inc.
> > > > > > > > This is free software; see the source for copying
> > > > > > > > conditions.
> > > > > > > > There
> > > > > > > > is NO
> > > > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR
A
> > > > > > > > PARTICULAR PURPOSE.
> > > > > > > >
> > > > > > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC)
7.3.0
> > > > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free Software
> > > > > > > > Foundation, Inc.
> > > > > > > > This is free software; see the source for copying
> > > > > > > > conditions.
> > > > > > > > There
> > > > > > > > is NO
> > > > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR
A
> > > > > > > > PARTICULAR PURPOSE.
> > > > > > > >
> > > > > > > > ramos at leo1:~>
> > > > > > > >
> > > > > > > > We don't have that version on our Red Hat systems. Met
> > > > > > > > 8.0
> > > > > > > > worked on RH, but 8.1 failed on the 'make test'. The
user
> > > > > > > > says
> > > > > > > > she is fine with the executables so far. I will have
to
> > > > > > > > build
> > > > > > > > a
> > > > > > > > gfortran 7.x version.
> > > > > > > >
> > > > > > > > Greg
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Hello,
> > > > > > > >
> > > > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > > > >
> > > > > > > > The problem was caused by the path for python library
> > > > > > > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4
> > > > > > > > exists
> > > > > > > > there
> > > > > > > > from the ldd output. It was used on building MET. MET
was
> > > > > > > > compiled
> > > > > > > > with gcc 4.4.7 which supports only libgfortran.so.3,
and
> > > > > > > > linked
> > > > > > > > with
> > > > > > > > libgfortran.so.4 because of MET_PYTHON_LD
configuration.
> > > > > > > > Some
> > > > > > > > libraries do not support the backward compatibility.
> > > > > > > > libgfortran.so
> > > > > > > > is
> > > > > > > > one of them. In this case, the compiler version and
> > > > > > > > library
> > > > > > > > version
> > > > > > > > should match.
> > > > > > > >
> > > > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
> > > > > > > > 8.1/bin/pb2nc
> > > > > > > > |grep
> > > > > > > > gfortran
> > > > > > > > libgfortran.so.4 => /software/depot/anaconda-
> > > > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > > > >
> > > > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-
> > > > > > > > 2.4.0/lib\
> > > > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\
> > > > > > > > -export-
> > > > > > > > dynamic
> > > > > > > >
> > > > > > > > The solution is compiling third party libraries and
MET
> > > > > > > > with
> > > > > > > > version
> > > > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > > > > > > libgfortran.so.5,
> > > > > > > > So the same problem will happen if MET is built with
> > > > > > > > gcc/gfortran
> > > > > > > > 6.x
> > > > > > > > or gcc/gfortran 8.x.
> > > > > > > >
> > > > > > > > Cheers,
> > > > > > > > Howard
> > > > > > > >
> > > > > > > > On Mon May 13 18:36:04 2019,
> > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > wrote:
> > > > > > > > > Attached is the config.log for NetCDf it shows
> > > > > > > > > /usr/bin/gcc
> > > > > > > > >
> > > > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat
> > > > > > > > > version.
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
> > > > > > > > > MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Thank you. Unfortunately, that does not tell me if
the
> > > > > > > > > libraries
> > > > > > > > > and
> > > > > > > > > the
> > > > > > > > > MET code were built with the same version of the
> > > > > > > > > compiler.
> > > > > > > > > I
> > > > > > > > > also
> > > > > > > > > do
> > > > > > > > > not
> > > > > > > > > see bufrlib in that list.
> > > > > > > > >
> > > > > > > > > Can you please tell me - were the libraries and the
MET
> > > > > > > > > code
> > > > > > > > > built
> > > > > > > > > with the
> > > > > > > > > same version of the compiler? I'm checking to see
if,
> > > > > > > > > for
> > > > > > > > > example,
> > > > > > > > > the
> > > > > > > > > libraries were built with gcc-6.3.0 but the MET code
> > > > > > > > > was
> > > > > > > > > build
> > > > > > > > > with
> > > > > > > > > gcc-4.4.7.
> > > > > > > > >
> > > > > > > > > Thanks!
> > > > > > > > >
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
> > > > > > > > > Contractor,
> > > > > > > > > Code
> > > > > > > > > 7501.1
> > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <URL:
> > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > You can see I am using those libraries for MET
8.1:
> > > > > > > > > >
> > > > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > > > (0x00002ab75e63b000)
> > > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > > (0x00002ab75e858000)
> > > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > > > libpng16.so.16 =>
> > > > > > > > > > /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > > (0x00002ab75ec60000)
> > > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > > (0x00002ab75ee92000)
> > > > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > > > /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > > (0x00002ab75f32f000)
> > > > > > > > > > libnetcdf.so.11 =>
> > > > > > > > > > /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > > (0x00002ab75f57c000)
> > > > > > > > > > libgsl.so.19 =>
> > > > > > > > > > /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > > > libgslcblas.so.0 =>
> > > > > > > > > > /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > > (0x00002ab75ff37000)
> > > > > > > > > > libstdc++.so.6 =>
> > > > > > > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > > > > > > (0x00002ab760189000)
> > > > > > > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > > > (0x00002ab7602cb000)
> > > > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > > > (0x00002ab7602e0000)
> > > > > > > > > > /lib64/ld-linux-x86-64.so.2
> > > > > > > > > > (0x0000559353f4f000)
> > > > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > > > /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > > (0x00002ab760675000)
> > > > > > > > > > libhdf5.so.10 =>
> > > > > > > > > > /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > > (0x00002ab760894000)
> > > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > > (0x00002ab760d6f000)
> > > > > > > > > > [root at maury2 bin]#
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > > > MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > Thank you, Greg. Can you please tell me - were
the
> > > > > > > > > > libraries
> > > > > > > > > > and
> > > > > > > > > > the
> > > > > > > > > > MET
> > > > > > > > > > code built with the same version of the compiler.
> > > > > > > > > > I'm
> > > > > > > > > > checking
> > > > > > > > > > to
> > > > > > > > > > see if,
> > > > > > > > > > for example, the libraries were built with gcc-
6.3.0
> > > > > > > > > > but
> > > > > > > > > > the
> > > > > > > > > > MET
> > > > > > > > > > code
> > > > > > > > > > was
> > > > > > > > > > build with gcc-4.4.7.
> > > > > > > > > >
> > > > > > > > > > It sounds like we need the libraries and the MET
code
> > > > > > > > > > to
> > > > > > > > > > be
> > > > > > > > > > built
> > > > > > > > > > with the
> > > > > > > > > > same version of the compiler, in this case.
> > > > > > > > > >
> > > > > > > > > > Thanks for any information you can provide.
> > > > > > > > > >
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr.
Gregory,
> > > > > > > > > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > > 7501.1
> > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > <URL:
> > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > Find the logs attached.
> > > > > > > > > > >
> > > > > > > > > > > Greg
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > regarding
> > > > > > > > > > > MET
> > > > > > > > > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > Prestopnik
> > > > > > > > > > >
> > > > > > > > > > > Could you please run the following:
> > > > > > > > > > >
> > > > > > > > > > > which pb2nc
> > > > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > > > >
> > > > > > > > > > > and send me the output?
> > > > > > > > > > >
> > > > > > > > > > > Please also send your config.log and make.log
file.
> > > > > > > > > > >
> > > > > > > > > > > Thank you!
> > > > > > > > > > >
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr.
Gregory,
> > > > > > > > > > > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > 7501.1
> > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > <URL:
> > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > I used the buildscript. It should build all of
> > > > > > > > > > > > the
> > > > > > > > > > > > external
> > > > > > > > > > > > libraries,
> > > > > > > > > > so
> > > > > > > > > > > > I believe everything was built with the same
> > > > > > > > > > > > compiler.
> > > > > > > > > > > >
> > > > > > > > > > > > Greg
> > > > > > > > > > > >
> > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > regarding
> > > > > > > > > > > > MET
> > > > > > > > > > > > 8.1
> > > > > > > > > > > > Julie
> > > > > > > > > > > > Prestopnik
> > > > > > > > > > > >
> > > > > > > > > > > > Hi Greg. Our developer suspects it may be a
> > > > > > > > > > > > mismatched
> > > > > > > > > > compiler/library
> > > > > > > > > > > > version. Was BUFRLIB installed with the same
> > > > > > > > > > > > compiler
> > > > > > > > > > > > as
> > > > > > > > > > > > MET?
> > > > > > > > > > > > Also,
> > > > > > > > > > > what
> > > > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > > > >
> > > > > > > > > > > > Thanks,
> > > > > > > > > > > > Julie
> > > > > > > > > > > >
> > > > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie
Prestopnik
> > > > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > > > wrote:
> > > > > > > > > > > >
> > > > > > > > > > > > > Hi Greg. I am checking in with another
> > > > > > > > > > > > > developer
> > > > > > > > > > > > > regarding
> > > > > > > > > > > > > the
> > > > > > > > > > > > > error
> > > > > > > > > > > you
> > > > > > > > > > > > > experienced. Thank you for your patience.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > >
> > > > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr.
> > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > Code
> > > > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > >
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> <URL:
> > > > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > > > > > > >> Copyright (C) 2010 Free Software
Foundation,
> > > > > > > > > > > > >> Inc.
> > > > > > > > > > > > >> This is free software; see the source for
> > > > > > > > > > > > >> copying
> > > > > > > > > > > > >> conditions.
> > > > > > > > > > > > >> There
> > > > > > > > > > > is
> > > > > > > > > > > > NO
> > > > > > > > > > > > >> warranty; not even for MERCHANTABILITY or
> > > > > > > > > > > > >> FITNESS
> > > > > > > > > > > > >> FOR
> > > > > > > > > > > > >> A
> > > > > > > > > > > > >> PARTICULAR
> > > > > > > > > > > > >> PURPOSE.
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> Not all of the tests passed, please see
> > > > > > > > > > > > >> attachment.
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> Greg
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > >> regarding
> > > > > > > > > > > > >> MET
> > > > > > > > > > > > >> 8.1
> > > > > > > > > > > > >> Julie
> > > > > > > > > > > > >> Prestopnik
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> Thank you for letting me know. I will
proceed
> > > > > > > > > > > > >> with
> > > > > > > > > > > > >> trying
> > > > > > > > > > > > >> to
> > > > > > > > > > > reproduce
> > > > > > > > > > > > >> the
> > > > > > > > > > > > >> problem using the gcc-6.3.0. I will follow
up
> > > > > > > > > > > > >> once
> > > > > > > > > > > > >> I
> > > > > > > > > > > > >> have
> > > > > > > > > > > > >> more
> > > > > > > > > > > > >> information.
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> Julie
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr.
> > > > > > > > > > > > >> Gregory,
> > > > > > > > > > > > >> Contractor,
> > > > > > > > > > > > >> Code
> > > > > > > > > > > > 7501.1
> > > > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > <URL:
> > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > When I compiled MET 8.0 the last time, it
> > > > > > > > > > > > >> > worked.
> > > > > > > > > > > > >> > I
> > > > > > > > > > > > >> > was
> > > > > > > > > > > > >> > also
> > > > > > > > > > > > >> > able
> > > > > > > > > > to
> > > > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > > > >> > Password:
> > > > > > > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
> > > > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > You are accessing a U.S. Government (USG)
> > > > > > > > > > > > >> > Information
> > > > > > > > > > > > >> > System
> > > > > > > > > > > > >> > (IS)
> > > > > > > > > > > that
> > > > > > > > > > > > >> is
> > > > > > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > > > > > >> > By using this IS (which includes any
device
> > > > > > > > > > > > >> > attached
> > > > > > > > > > > > >> > to
> > > > > > > > > > > > >> > this
> > > > > > > > > > > > >> > IS),
> > > > > > > > > > > you
> > > > > > > > > > > > >> > consent to the following conditions:
> > > > > > > > > > > > >> > -The USG routinely intercepts and
monitors
> > > > > > > > > > > > >> > communications
> > > > > > > > > > > > >> > on
> > > > > > > > > > > > >> > this
> > > > > > > > > > IS
> > > > > > > > > > > > for
> > > > > > > > > > > > >> > purposes including, but not limited to,
> > > > > > > > > > > > >> > penetration testing, COMSEC monitoring,
> > > > > > > > > > > > >> > network
> > > > > > > > > > > > >> > operations
> > > > > > > > > > > > >> > and
> > > > > > > > > > > > defense,
> > > > > > > > > > > > >> > personnel misconduct (PM), law
enforcement
> > > > > > > > > > > > >> > (LE),
> > > > > > > > > > > > >> > and counterintelligence (CI)
investigations.
> > > > > > > > > > > > >> > -At any time, the USG may inspect and
seize
> > > > > > > > > > > > >> > data
> > > > > > > > > > > > >> > stored
> > > > > > > > > > > > >> > on
> > > > > > > > > > > > >> > this
> > > > > > > > > > IS.
> > > > > > > > > > > > >> > -Communications using, or data stored on,
> > > > > > > > > > > > >> > this
> > > > > > > > > > > > >> > IS
> > > > > > > > > > > > >> > are
> > > > > > > > > > > > >> > not
> > > > > > > > > > > > >> > private,
> > > > > > > > > > > are
> > > > > > > > > > > > >> > subject to routine monitoring,
interception,
> > > > > > > > > > > > >> > and search, and may be disclosed or used
for
> > > > > > > > > > > > >> > any
> > > > > > > > > > > > >> > USG-
> > > > > > > > > > > > >> > authorized
> > > > > > > > > > > > purpose.
> > > > > > > > > > > > >> > -This IS includes security measures
(e.g.,
> > > > > > > > > > > > >> > authentication
> > > > > > > > > > > > >> > and
> > > > > > > > > > access
> > > > > > > > > > > > >> > controls) to protect USG interests -- not
> > > > > > > > > > > > >> > for
> > > > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > > > >> > -Notwithstanding the above, using this IS
> > > > > > > > > > > > >> > does
> > > > > > > > > > > > >> > not
> > > > > > > > > > > > >> > constitute
> > > > > > > > > > > consent
> > > > > > > > > > > > to
> > > > > > > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > > > > > > >> > monitoring of the content of privileged
> > > > > > > > > > > > >> > communications,
> > > > > > > > > > > > >> > or
> > > > > > > > > > > > >> > work
> > > > > > > > > > > > product,
> > > > > > > > > > > > >> > related to personal representation or
> > > > > > > > > > > > >> > services by attorneys, psychotherapists,
or
> > > > > > > > > > > > >> > clergy,
> > > > > > > > > > > > >> > and
> > > > > > > > > > > > >> > their
> > > > > > > > > > > > >> assistants.
> > > > > > > > > > > > >> > Such communications and work product are
> > > > > > > > > > > > >> > private and confidential. See User
Agreement
> > > > > > > > > > > > >> > for
> > > > > > > > > > > > >> > details.
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > > >> > regarding
> > > > > > > > > > > > >> > MET
> > > > > > > > > > > > >> > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > > > >> > Prestopnik
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > Hi Gregory. I have not tested with
version
> > > > > > > > > > > > >> > 6.3.0
> > > > > > > > > > > > >> > of
> > > > > > > > > > > > >> > the
> > > > > > > > > > > > >> > gcc
> > > > > > > > > > > compiler,
> > > > > > > > > > > > >> but
> > > > > > > > > > > > >> > rather only with lower versions
> > > > > > > > > > > > >> > (specifically
> > > > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > > > >> > We
> > > > > > > > > > > > >> > would,
> > > > > > > > > > of
> > > > > > > > > > > > >> course,
> > > > > > > > > > > > >> > want our code to work with higher
versions
> > > > > > > > > > > > >> > as
> > > > > > > > > > > > >> > well.
> > > > > > > > > > > > >> > I
> > > > > > > > > > > > >> > have
> > > > > > > > > > > > >> > not
> > > > > > > > > > yet
> > > > > > > > > > > > had
> > > > > > > > > > > > >> an
> > > > > > > > > > > > >> > opportunity to test with a higher version
> > > > > > > > > > > > >> > like
> > > > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > > > >> > Do
> > > > > > > > > > > > >> > you have
> > > > > > > > > > > the
> > > > > > > > > > > > >> > ability to compile MET using a lesser
> > > > > > > > > > > > >> > version
> > > > > > > > > > > > >> > of
> > > > > > > > > > > > >> > the
> > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > >> > compiler
> > > > > > > > > > to
> > > > > > > > > > > > >> see if
> > > > > > > > > > > > >> > that clears up the issues you are
> > > > > > > > > > > > >> > experiencing?
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > Julie
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos,
Mr.
> > > > > > > > > > > > >> > Gregory,
> > > > > > > > > > > > >> > Contractor,
> > > > > > > > > > Code
> > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > <URL:
> > > > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > Greg
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > > >> > > regarding
> > > > > > > > > > > > >> > > MET
> > > > > > > > > > > > >> > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > Hi Greg. Thank you for passing along
your
> > > > > > > > > > > > >> > > config.log
> > > > > > > > > > > > >> > > file. I
> > > > > > > > > > > see a
> > > > > > > > > > > > >> > couple
> > > > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > Based on those errors, it looks like
you
> > > > > > > > > > > > >> > > may
> > > > > > > > > > > > >> > > not
> > > > > > > > > > > > >> > > have
> > > > > > > > > > > > >> > > flex
> > > > > > > > > > > > >> > > and
> > > > > > > > > > > bison
> > > > > > > > > > > > >> > > installed. Please install those and
try
> > > > > > > > > > > > >> > > running
> > > > > > > > > > > > >> > > configure
> > > > > > > > > > again.
> > > > > > > > > > > > >> Please
> > > > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > Also, I just wanted to address one
other
> > > > > > > > > > > > >> > > thing.
> > > > > > > > > > > > >> > > In
> > > > > > > > > > > > >> > > your
> > > > > > > > > > original
> > > > > > > > > > > > >> email
> > > > > > > > > > > > >> > you
> > > > > > > > > > > > >> > > listed the following as part of your
"MET
> > > > > > > > > > > > >> > > Configuration
> > > > > > > > > > settings":
> > > > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7
-lpthread
> > > > > > > > > > > > >> > > -ldl
> > > > > > > > > > > > >> > > -lutil
> > > > > > > > > > > > >> > > -lm
> > > > > > > > > > > -Xlinker
> > > > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > However, in your config.log file it
looks
> > > > > > > > > > > > >> > > like
> > > > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > > > >> actually
> > > > > > > > > > > > >> > > set to be "-L/software/depot/anaconda-
> > > > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > > > -lpthread
> > > > > > > > > > > > >> > -ldl
> > > > > > > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic",
> > > > > > > > > > > > >> > > which
> > > > > > > > > > > > >> > > is
> > > > > > > > > > > > >> > > correct
> > > > > > > > > > > > >> > > because
> > > > > > > > > > you
> > > > > > > > > > > > >> need
> > > > > > > > > > > > >> > to
> > > > > > > > > > > > >> > > have that -L part in there, so I just
want
> > > > > > > > > > > > >> > > to
> > > > > > > > > > > > >> > > ensure
> > > > > > > > > > > > >> > > that
> > > > > > > > > > > > >> > > will
> > > > > > > > > > > stay
> > > > > > > > > > > > >> there
> > > > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > Thanks,
> > > > > > > > > > > > >> > > Julie
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos,
Mr.
> > > > > > > > > > > > >> > > Gregory,
> > > > > > > > > > > > >> > > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > <URL:
> > > > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
> > > > > > > > > > > > >> > > > configure.log
> > > > > > > > > > > > >> > > > -bash: [ramos at predict: command not
found
> > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091]
> > > > > > > > > > > > >> > > > Help
> > > > > > > > > > > > >> > > > regarding
> > > > > > > > > > > > >> > > > MET
> > > > > > > > > > > > >> > > > 8.1
> > > > > > > > > > > > Julie
> > > > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > I'll go ahead and assign this ticket
to
> > > > > > > > > > > > >> > > > Julie,
> > > > > > > > > > > > >> > > > and
> > > > > > > > > > > > >> > > > she
> > > > > > > > > > > > >> > > > should
> > > > > > > > > > be
> > > > > > > > > > > > >> > writing
> > > > > > > > > > > > >> > > > you back in the next couple of days.
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > > > >> > > > file you
> > > > > > > > > > > > >> > generated
> > > > > > > > > > > > >> > > as
> > > > > > > > > > > > >> > > > well as the "config.log" file from
that
> > > > > > > > > > > > >> > > > same
> > > > > > > > > > > > >> > > > directory.
> > > > > > > > > > > > >> > > > So
> > > > > > > > > > > please
> > > > > > > > > > > > >> send
> > > > > > > > > > > > >> > > > those along when you get a chance.
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > > > >> > > > John
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos,
> > > > > > > > > > > > >> > > > Mr.
> > > > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request
> > > > > > > > > > > > >> > > > > 90091
> > > > > > > > > > > > >> > > > > was
> > > > > > > > > > > > >> > > > > acted
> > > > > > > > > > > > >> > > > > upon.
> > > > > > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > > > >> > > > > Subject: Help regarding MET 8.1
Julie
> > > > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > > > >> > > > > Requestors:
> > > > > > > > > > > > >> > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > >> > > > > Julie helped me compiled 8.0 using
gcc
> > > > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > > > >> > > > > and
> > > > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > > > 2.4.0.
> > > > > > > > > > > > >> The
> > > > > > > > > > > > >> > > user
> > > > > > > > > > > > >> > > > > asked for 8.1. I took notes last
time,
> > > > > > > > > > > > >> > > > > but
> > > > > > > > > > > > >> > > > > running
> > > > > > > > > > > > >> > > > > into
> > > > > > > > > > > > problems:
> > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > >> > > > > MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > >> >
> > > > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3
> > > > > > > > > > > > >> > > > > -Wall
> > > > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >>
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > > > >> > > > > export
MET_HDFEOS=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > >> > > > > export
MET_NETCDF=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > >> > > > > export
> > > > > > > > > > MET_CAIROLIB=/software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7
> > > > > > > > > > > > >> > > > > -lpthread
> > > > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > > > >> > > > > -lm
> > > > > > > > > > > > >> -Xlinker
> > > > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > > > >> > > > > export
MET_GRIB2C=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > >> > > > > export
MET_SUBDIR=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > >> > > > > MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > > > > > > >> > > > > ./configure
> > > > > > > > > > > > >> > > > > --prefix=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > >> --enable-grib2
> > > > > > > > > > > > >> > > > > --enable-modis --enable-
mode_graphics
> > > > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > > > >> > > configure.log
> > > > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > > > >> > > > > configure returned with non-zero
(127)
> > > > > > > > > > > > >> > > > > status
> > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >>
> > > > > > > > > > > > >>
> > > > > > > > > > > > >>
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> >
> >
> >
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Wed May 22 19:05:44 2019
That's fine. If the make test fails, doesn't that mean the executables
created aren't reliable?
Greg
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Wednesday, May 22, 2019 5:38 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
I'm sorry that MET code is not ready for newer GNU compiler. The error
with "make test" was caused by changed APIs from newer gnu compiler. I
fixed it for ascii2nc locally with updating two files. I tried few MET
tools and found more than 10 files should be updated.
I think it's beyond helpdesk work. It's better to support the newer
version GNU compiler with next release.
Cheers,
Howard
On Wed May 22 12:47:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> Attached is the Makefile, just in case.
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Wednesday, May 22, 2019 11:34 AM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Would you run the same command manually and sen me the output?
>
> cd /software/depot/met-8.1a/met-8.1a/scripts
> ../src/tools/other/ascii2nc/ascii2nc
> ../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v 2
> (NOTE: the same dcommand but one line instead of multiple lines)
>
> If the command works, would you send me Makefile at the current
> directory.
> If not working, please run following commands and send me
> ascii2nc_test.log.
>
> ../src/tools/other/ascii2nc/ascii2nc
> ../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v 5
> -log ascii2nc_test.log
>
> ldd ../src/tools/other/ascii2nc/ascii2nc >> ascii2nc_test.log
>
>
> Cheers,
> Howard
>
>
> On Wed May 22 11:26:02 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > Attached find my make.log and make_test.log
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Wednesday, May 22, 2019 7:11 AM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > The runntime NetCDF library is decided by LD_LIBRARY_PATH.
> > LD_LIBRARY_PATH can be changed by module loading or by user
> > configurations. If the problem happens with NetCDF, would you ask
> > them
> > to run this command and check which NetCDF library is loaded?
> >
> > ldd bin/<MET_tool_name> | grep netcdf
> > ldd bin/<MET_tool_name> | grep hdf
> >
> > for example,
> > ldd bin/pb2nc | grep netcdf
> > ldd bin/pb2nc | grep hdf
> > ldd bin/grid_stat | grep netcdf
> > ldd bin/grid_stat | grep hdf
> >
> > Note: There are dependency between NetCDF4 and HDF5.
> >
> > Cheers,
> > Howard
> >
> > On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > OK, we have several people who are using the 8.1 version I
built.
> > > We
> > > use a central location:
> > >
> > > /software/depot
> > >
> > > To house all of our software. To be clear, the first build went
OK,
> > > it
> > > was 'make test' that failed. So the users are using that, but
> > > someone
> > > ran into an error today and they asked me about NetCDF. I think
it
> > > was
> > > their setup. The same build was used on two different machines,
> > > one
> > > had an error, one didn't.
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Tuesday, May 21, 2019 5:50 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > No, external libraries are not changed.
> > >
> > > Personally, I'm using newer NetCDF library (4.6.x instead of
> > > 4.4.1.1).
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Tue May 21 18:39:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > No, that is not what I am asking. Every time I build, I use
your
> > > > script which builds everything.
> > > >
> > > > What I am asking is, did the versions of the external
libraries
> > > > change?
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Tuesday, May 21, 2019 5:34 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > > Prestopnik
> > > >
> > > > Yes, the third party libraries should be compiled with newer
> > > > version.
> > > >
> > > > The compile error with gnu 7.3.0 happens with gnu 6.3.0, too.
> > > > The fix/patch is not ready officially. One file has to be
> > > > corrected
> > > > to support newer version gnu compiler. Would you replace
> > > > data_line.cc
> > > > with attached file or modify it manually?
> > > >
> > > > Filename:
> > > > met-8.1/src/basic/vx_util/data_line.cc
> > > >
> > > > line 202:
> > > >
> > > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > > >
> > > > line 218:
> > > >
> > > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > > On Tue May 21 18:21:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > Did new external libraries need to be built with 8.1?
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Thursday, May 16, 2019 4:01 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > No new tools but many enhancements.
> > > > >
> > > > > It's available at
> > > > > https://dtcenter.org/community-code/model-evaluation-tools-
> > > > > met/met-
> > > > > version-8-1
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > > On Thu May 16 16:46:32 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > Maybe you can answer one question while I try to
reinstall
> > > > > > everything. What features does 8.1 provide over 8.0?
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Would try this command at /software/depot/met-8.1/met-
> > > > > > 8.1/scripts
> > > > > > directory?
> > > > > >
> > > > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > > > echo $LD_LIBRARY_PATH
> > > > > >
> > > > > > 2. Save LD_LIBRARY_PATH
> > > > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > > > OR
> > > > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > > > >
> > > > > > 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-
> > > > > > 2.4.0/lib
> > > > > >
> > > > > > 4. Check which libgfortran.so at /software/depot/met-
8.1/met-
> > > > > > 8.1/scripts directory.
> > > > > >
> > > > > > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran OR
ldd
> > > > > > ../bin/pb2nc | grep libgfortran
> > > > > >
> > > > > > 5. Check libgfortran version (should be libgfortran.so.3,
not
> > > > > > so.4)
> > > > > >
> > > > > > 6. Run the failed command manually at /software/depot/met-
> > > > > > 8.1/met-
> > > > > > 8.1/scripts directory if libgfortran.so.3.
> > > > > >
> > > > > > ../src/tools/other/pb2nc/pb2nc \
> > > > > >
> > > > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > > > \
> > > > > > ../out/pb2nc/sample_pb.nc \
> > > > > > config/PB2NCConfig_G212 \
> > > > > > -v 2
> > > > > >
> > > > > > 7. Change back LD_LIBRARY_PATH
> > > > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > > > OR
> > > > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > >
> > > > > > On Thu May 16 15:28:16 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-
grib2-
> > > > > > > support
> > > > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > (0x0000003453800000)
> > > > > > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > > > > > > libutil.so.1 => /lib64/libutil.so.1
(0x0000003455800000)
> > > > > > > libpng16.so.16 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libpng16.so.16
(0x00007f7f19d0c000)
> > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > (0x00007f7f19af4000)
> > > > > > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > (0x00007f7f198a6000)
> > > > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
(0x00007f7f19567000)
> > > > > > > libgsl.so.19 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libgsl.so.19 (0x00007f7f19125000)
> > > > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
(0x00007f7f18eeb000)
> > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > (0x00007f7f18c99000)
> > > > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > > (0x00007f7f18b58000)
> > > > > > > libgcc_s.so.1 =>
> > > > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > > > (0x00007f7f18b42000)
> > > > > > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
(0x00007f7f18922000)
> > > > > > > libhdf5.so.10 => /software/depot/met-
> > > > > > > 8.1/external_libs/lib/libhdf5.so.10 (0x00007f7f18447000)
> > > > > > > librt.so.1 => /lib64/librt.so.1 (0x0000003454400000)
> > > > > > > [ramos at lorenz bin]$
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > MET is expecting "libpython2.7.so" to enable python
> > > > > > > support.
> > > > > > >
> > > > > > > A log message shows the python was not enabled. Is
python
> > > > > > > supporting is critical?
> > > > > > >
> > > > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > > > > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > > > > > --enable-lidar2nc > configure.log 2>&1
> > > > > > >
> > > > > > > If not, you can build/run MET 8.1 with gcc/gfortran
4.4.7.
> > > > > > > 1. Make sure python is not enabled
> > > > > > > no "--enable-python" option for ./configure
> > > > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
> > > > > > > LD_LIBRARY_PATH at the build time and runtime both.
> > > > > > >
> > > > > > > Cheers,
> > > > > > > Howard
> > > > > > >
> > > > > > > On Thu May 16 14:17:40 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > wrote:
> > > > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > > > >
> > > > > > > > ramos at leo1:~> gcc --version
> > > > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright (C)
2017
> > > > > > > > Free
> > > > > > > > Software Foundation, Inc.
> > > > > > > > This is free software; see the source for copying
> > > > > > > > conditions.
> > > > > > > > There
> > > > > > > > is NO
> > > > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR
A
> > > > > > > > PARTICULAR PURPOSE.
> > > > > > > >
> > > > > > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC)
7.3.0
> > > > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free Software
> > > > > > > > Foundation, Inc.
> > > > > > > > This is free software; see the source for copying
> > > > > > > > conditions.
> > > > > > > > There
> > > > > > > > is NO
> > > > > > > > warranty; not even for MERCHANTABILITY or FITNESS FOR
A
> > > > > > > > PARTICULAR PURPOSE.
> > > > > > > >
> > > > > > > > ramos at leo1:~>
> > > > > > > >
> > > > > > > > We don't have that version on our Red Hat systems. Met
> > > > > > > > 8.0
> > > > > > > > worked on RH, but 8.1 failed on the 'make test'. The
user
> > > > > > > > says
> > > > > > > > she is fine with the executables so far. I will have
to
> > > > > > > > build
> > > > > > > > a
> > > > > > > > gfortran 7.x version.
> > > > > > > >
> > > > > > > > Greg
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Hello,
> > > > > > > >
> > > > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > > > >
> > > > > > > > The problem was caused by the path for python library
> > > > > > > > (/software/depot/anaconda-2.4.0/lib). libgfortran.so.4
> > > > > > > > exists
> > > > > > > > there
> > > > > > > > from the ldd output. It was used on building MET. MET
was
> > > > > > > > compiled
> > > > > > > > with gcc 4.4.7 which supports only libgfortran.so.3,
and
> > > > > > > > linked
> > > > > > > > with
> > > > > > > > libgfortran.so.4 because of MET_PYTHON_LD
configuration.
> > > > > > > > Some
> > > > > > > > libraries do not support the backward compatibility.
> > > > > > > > libgfortran.so
> > > > > > > > is
> > > > > > > > one of them. In this case, the compiler version and
> > > > > > > > library
> > > > > > > > version
> > > > > > > > should match.
> > > > > > > >
> > > > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
> > > > > > > > 8.1/bin/pb2nc
> > > > > > > > |grep
> > > > > > > > gfortran
> > > > > > > > libgfortran.so.4 => /software/depot/anaconda-
> > > > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > > > >
> > > > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-
> > > > > > > > 2.4.0/lib\
> > > > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\
> > > > > > > > -export-
> > > > > > > > dynamic
> > > > > > > >
> > > > > > > > The solution is compiling third party libraries and
MET
> > > > > > > > with
> > > > > > > > version
> > > > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > > > > > > libgfortran.so.5,
> > > > > > > > So the same problem will happen if MET is built with
> > > > > > > > gcc/gfortran
> > > > > > > > 6.x
> > > > > > > > or gcc/gfortran 8.x.
> > > > > > > >
> > > > > > > > Cheers,
> > > > > > > > Howard
> > > > > > > >
> > > > > > > > On Mon May 13 18:36:04 2019,
> > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > wrote:
> > > > > > > > > Attached is the config.log for NetCDf it shows
> > > > > > > > > /usr/bin/gcc
> > > > > > > > >
> > > > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red Hat
> > > > > > > > > version.
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help regarding
> > > > > > > > > MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Thank you. Unfortunately, that does not tell me if
the
> > > > > > > > > libraries
> > > > > > > > > and
> > > > > > > > > the
> > > > > > > > > MET code were built with the same version of the
> > > > > > > > > compiler.
> > > > > > > > > I
> > > > > > > > > also
> > > > > > > > > do
> > > > > > > > > not
> > > > > > > > > see bufrlib in that list.
> > > > > > > > >
> > > > > > > > > Can you please tell me - were the libraries and the
MET
> > > > > > > > > code
> > > > > > > > > built
> > > > > > > > > with the
> > > > > > > > > same version of the compiler? I'm checking to see
if,
> > > > > > > > > for
> > > > > > > > > example,
> > > > > > > > > the
> > > > > > > > > libraries were built with gcc-6.3.0 but the MET code
> > > > > > > > > was
> > > > > > > > > build
> > > > > > > > > with
> > > > > > > > > gcc-4.4.7.
> > > > > > > > >
> > > > > > > > > Thanks!
> > > > > > > > >
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr. Gregory,
> > > > > > > > > Contractor,
> > > > > > > > > Code
> > > > > > > > > 7501.1
> > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <URL:
> > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > You can see I am using those libraries for MET
8.1:
> > > > > > > > > >
> > > > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > > > (0x00002ab75e63b000)
> > > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > > (0x00002ab75e858000)
> > > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > > > libpng16.so.16 =>
> > > > > > > > > > /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > > (0x00002ab75ec60000)
> > > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > > (0x00002ab75ee92000)
> > > > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > > > /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > > (0x00002ab75f32f000)
> > > > > > > > > > libnetcdf.so.11 =>
> > > > > > > > > > /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > > (0x00002ab75f57c000)
> > > > > > > > > > libgsl.so.19 =>
> > > > > > > > > > /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > > > libgslcblas.so.0 =>
> > > > > > > > > > /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > > (0x00002ab75ff37000)
> > > > > > > > > > libstdc++.so.6 =>
> > > > > > > > > > /software/depot/anaconda-2.4.0/lib/libstdc++.so.6
> > > > > > > > > > (0x00002ab760189000)
> > > > > > > > > > libgcc_s.so.1 => /software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > > > (0x00002ab7602cb000)
> > > > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > > > (0x00002ab7602e0000)
> > > > > > > > > > /lib64/ld-linux-x86-64.so.2
> > > > > > > > > > (0x0000559353f4f000)
> > > > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > > > /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > > (0x00002ab760675000)
> > > > > > > > > > libhdf5.so.10 =>
> > > > > > > > > > /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > > (0x00002ab760894000)
> > > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > > (0x00002ab760d6f000)
> > > > > > > > > > [root at maury2 bin]#
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > > > MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > Thank you, Greg. Can you please tell me - were
the
> > > > > > > > > > libraries
> > > > > > > > > > and
> > > > > > > > > > the
> > > > > > > > > > MET
> > > > > > > > > > code built with the same version of the compiler.
> > > > > > > > > > I'm
> > > > > > > > > > checking
> > > > > > > > > > to
> > > > > > > > > > see if,
> > > > > > > > > > for example, the libraries were built with gcc-
6.3.0
> > > > > > > > > > but
> > > > > > > > > > the
> > > > > > > > > > MET
> > > > > > > > > > code
> > > > > > > > > > was
> > > > > > > > > > build with gcc-4.4.7.
> > > > > > > > > >
> > > > > > > > > > It sounds like we need the libraries and the MET
code
> > > > > > > > > > to
> > > > > > > > > > be
> > > > > > > > > > built
> > > > > > > > > > with the
> > > > > > > > > > same version of the compiler, in this case.
> > > > > > > > > >
> > > > > > > > > > Thanks for any information you can provide.
> > > > > > > > > >
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr.
Gregory,
> > > > > > > > > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > > 7501.1
> > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > <URL:
> > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > Find the logs attached.
> > > > > > > > > > >
> > > > > > > > > > > Greg
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > regarding
> > > > > > > > > > > MET
> > > > > > > > > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > Prestopnik
> > > > > > > > > > >
> > > > > > > > > > > Could you please run the following:
> > > > > > > > > > >
> > > > > > > > > > > which pb2nc
> > > > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > > > >
> > > > > > > > > > > and send me the output?
> > > > > > > > > > >
> > > > > > > > > > > Please also send your config.log and make.log
file.
> > > > > > > > > > >
> > > > > > > > > > > Thank you!
> > > > > > > > > > >
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr.
Gregory,
> > > > > > > > > > > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > 7501.1
> > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > <URL:
> > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > I used the buildscript. It should build all of
> > > > > > > > > > > > the
> > > > > > > > > > > > external
> > > > > > > > > > > > libraries,
> > > > > > > > > > so
> > > > > > > > > > > > I believe everything was built with the same
> > > > > > > > > > > > compiler.
> > > > > > > > > > > >
> > > > > > > > > > > > Greg
> > > > > > > > > > > >
> > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > regarding
> > > > > > > > > > > > MET
> > > > > > > > > > > > 8.1
> > > > > > > > > > > > Julie
> > > > > > > > > > > > Prestopnik
> > > > > > > > > > > >
> > > > > > > > > > > > Hi Greg. Our developer suspects it may be a
> > > > > > > > > > > > mismatched
> > > > > > > > > > compiler/library
> > > > > > > > > > > > version. Was BUFRLIB installed with the same
> > > > > > > > > > > > compiler
> > > > > > > > > > > > as
> > > > > > > > > > > > MET?
> > > > > > > > > > > > Also,
> > > > > > > > > > > what
> > > > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > > > >
> > > > > > > > > > > > Thanks,
> > > > > > > > > > > > Julie
> > > > > > > > > > > >
> > > > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie
Prestopnik
> > > > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > > > wrote:
> > > > > > > > > > > >
> > > > > > > > > > > > > Hi Greg. I am checking in with another
> > > > > > > > > > > > > developer
> > > > > > > > > > > > > regarding
> > > > > > > > > > > > > the
> > > > > > > > > > > > > error
> > > > > > > > > > > you
> > > > > > > > > > > > > experienced. Thank you for your patience.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > >
> > > > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr.
> > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > Code
> > > > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > >
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> <URL:
> > > > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-23)
> > > > > > > > > > > > >> Copyright (C) 2010 Free Software
Foundation,
> > > > > > > > > > > > >> Inc.
> > > > > > > > > > > > >> This is free software; see the source for
> > > > > > > > > > > > >> copying
> > > > > > > > > > > > >> conditions.
> > > > > > > > > > > > >> There
> > > > > > > > > > > is
> > > > > > > > > > > > NO
> > > > > > > > > > > > >> warranty; not even for MERCHANTABILITY or
> > > > > > > > > > > > >> FITNESS
> > > > > > > > > > > > >> FOR
> > > > > > > > > > > > >> A
> > > > > > > > > > > > >> PARTICULAR
> > > > > > > > > > > > >> PURPOSE.
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> Not all of the tests passed, please see
> > > > > > > > > > > > >> attachment.
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> Greg
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > >> regarding
> > > > > > > > > > > > >> MET
> > > > > > > > > > > > >> 8.1
> > > > > > > > > > > > >> Julie
> > > > > > > > > > > > >> Prestopnik
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> Thank you for letting me know. I will
proceed
> > > > > > > > > > > > >> with
> > > > > > > > > > > > >> trying
> > > > > > > > > > > > >> to
> > > > > > > > > > > reproduce
> > > > > > > > > > > > >> the
> > > > > > > > > > > > >> problem using the gcc-6.3.0. I will follow
up
> > > > > > > > > > > > >> once
> > > > > > > > > > > > >> I
> > > > > > > > > > > > >> have
> > > > > > > > > > > > >> more
> > > > > > > > > > > > >> information.
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> Julie
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr.
> > > > > > > > > > > > >> Gregory,
> > > > > > > > > > > > >> Contractor,
> > > > > > > > > > > > >> Code
> > > > > > > > > > > > 7501.1
> > > > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > >>
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > <URL:
> > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > When I compiled MET 8.0 the last time, it
> > > > > > > > > > > > >> > worked.
> > > > > > > > > > > > >> > I
> > > > > > > > > > > > >> > was
> > > > > > > > > > > > >> > also
> > > > > > > > > > > > >> > able
> > > > > > > > > > to
> > > > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > > > >> > Password:
> > > > > > > > > > > > >> > Last login: Thu May 9 17:38:30 2019 from
> > > > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > You are accessing a U.S. Government (USG)
> > > > > > > > > > > > >> > Information
> > > > > > > > > > > > >> > System
> > > > > > > > > > > > >> > (IS)
> > > > > > > > > > > that
> > > > > > > > > > > > >> is
> > > > > > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > > > > > >> > By using this IS (which includes any
device
> > > > > > > > > > > > >> > attached
> > > > > > > > > > > > >> > to
> > > > > > > > > > > > >> > this
> > > > > > > > > > > > >> > IS),
> > > > > > > > > > > you
> > > > > > > > > > > > >> > consent to the following conditions:
> > > > > > > > > > > > >> > -The USG routinely intercepts and
monitors
> > > > > > > > > > > > >> > communications
> > > > > > > > > > > > >> > on
> > > > > > > > > > > > >> > this
> > > > > > > > > > IS
> > > > > > > > > > > > for
> > > > > > > > > > > > >> > purposes including, but not limited to,
> > > > > > > > > > > > >> > penetration testing, COMSEC monitoring,
> > > > > > > > > > > > >> > network
> > > > > > > > > > > > >> > operations
> > > > > > > > > > > > >> > and
> > > > > > > > > > > > defense,
> > > > > > > > > > > > >> > personnel misconduct (PM), law
enforcement
> > > > > > > > > > > > >> > (LE),
> > > > > > > > > > > > >> > and counterintelligence (CI)
investigations.
> > > > > > > > > > > > >> > -At any time, the USG may inspect and
seize
> > > > > > > > > > > > >> > data
> > > > > > > > > > > > >> > stored
> > > > > > > > > > > > >> > on
> > > > > > > > > > > > >> > this
> > > > > > > > > > IS.
> > > > > > > > > > > > >> > -Communications using, or data stored on,
> > > > > > > > > > > > >> > this
> > > > > > > > > > > > >> > IS
> > > > > > > > > > > > >> > are
> > > > > > > > > > > > >> > not
> > > > > > > > > > > > >> > private,
> > > > > > > > > > > are
> > > > > > > > > > > > >> > subject to routine monitoring,
interception,
> > > > > > > > > > > > >> > and search, and may be disclosed or used
for
> > > > > > > > > > > > >> > any
> > > > > > > > > > > > >> > USG-
> > > > > > > > > > > > >> > authorized
> > > > > > > > > > > > purpose.
> > > > > > > > > > > > >> > -This IS includes security measures
(e.g.,
> > > > > > > > > > > > >> > authentication
> > > > > > > > > > > > >> > and
> > > > > > > > > > access
> > > > > > > > > > > > >> > controls) to protect USG interests -- not
> > > > > > > > > > > > >> > for
> > > > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > > > >> > -Notwithstanding the above, using this IS
> > > > > > > > > > > > >> > does
> > > > > > > > > > > > >> > not
> > > > > > > > > > > > >> > constitute
> > > > > > > > > > > consent
> > > > > > > > > > > > to
> > > > > > > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > > > > > > >> > monitoring of the content of privileged
> > > > > > > > > > > > >> > communications,
> > > > > > > > > > > > >> > or
> > > > > > > > > > > > >> > work
> > > > > > > > > > > > product,
> > > > > > > > > > > > >> > related to personal representation or
> > > > > > > > > > > > >> > services by attorneys, psychotherapists,
or
> > > > > > > > > > > > >> > clergy,
> > > > > > > > > > > > >> > and
> > > > > > > > > > > > >> > their
> > > > > > > > > > > > >> assistants.
> > > > > > > > > > > > >> > Such communications and work product are
> > > > > > > > > > > > >> > private and confidential. See User
Agreement
> > > > > > > > > > > > >> > for
> > > > > > > > > > > > >> > details.
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > > >> > regarding
> > > > > > > > > > > > >> > MET
> > > > > > > > > > > > >> > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > > > >> > Prestopnik
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > Hi Gregory. I have not tested with
version
> > > > > > > > > > > > >> > 6.3.0
> > > > > > > > > > > > >> > of
> > > > > > > > > > > > >> > the
> > > > > > > > > > > > >> > gcc
> > > > > > > > > > > compiler,
> > > > > > > > > > > > >> but
> > > > > > > > > > > > >> > rather only with lower versions
> > > > > > > > > > > > >> > (specifically
> > > > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > > > >> > We
> > > > > > > > > > > > >> > would,
> > > > > > > > > > of
> > > > > > > > > > > > >> course,
> > > > > > > > > > > > >> > want our code to work with higher
versions
> > > > > > > > > > > > >> > as
> > > > > > > > > > > > >> > well.
> > > > > > > > > > > > >> > I
> > > > > > > > > > > > >> > have
> > > > > > > > > > > > >> > not
> > > > > > > > > > yet
> > > > > > > > > > > > had
> > > > > > > > > > > > >> an
> > > > > > > > > > > > >> > opportunity to test with a higher version
> > > > > > > > > > > > >> > like
> > > > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > > > >> > Do
> > > > > > > > > > > > >> > you have
> > > > > > > > > > > the
> > > > > > > > > > > > >> > ability to compile MET using a lesser
> > > > > > > > > > > > >> > version
> > > > > > > > > > > > >> > of
> > > > > > > > > > > > >> > the
> > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > >> > compiler
> > > > > > > > > > to
> > > > > > > > > > > > >> see if
> > > > > > > > > > > > >> > that clears up the issues you are
> > > > > > > > > > > > >> > experiencing?
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > Julie
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos,
Mr.
> > > > > > > > > > > > >> > Gregory,
> > > > > > > > > > > > >> > Contractor,
> > > > > > > > > > Code
> > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > <URL:
> > > > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > Greg
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > > >> > > regarding
> > > > > > > > > > > > >> > > MET
> > > > > > > > > > > > >> > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > Hi Greg. Thank you for passing along
your
> > > > > > > > > > > > >> > > config.log
> > > > > > > > > > > > >> > > file. I
> > > > > > > > > > > see a
> > > > > > > > > > > > >> > couple
> > > > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > Based on those errors, it looks like
you
> > > > > > > > > > > > >> > > may
> > > > > > > > > > > > >> > > not
> > > > > > > > > > > > >> > > have
> > > > > > > > > > > > >> > > flex
> > > > > > > > > > > > >> > > and
> > > > > > > > > > > bison
> > > > > > > > > > > > >> > > installed. Please install those and
try
> > > > > > > > > > > > >> > > running
> > > > > > > > > > > > >> > > configure
> > > > > > > > > > again.
> > > > > > > > > > > > >> Please
> > > > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > Also, I just wanted to address one
other
> > > > > > > > > > > > >> > > thing.
> > > > > > > > > > > > >> > > In
> > > > > > > > > > > > >> > > your
> > > > > > > > > > original
> > > > > > > > > > > > >> email
> > > > > > > > > > > > >> > you
> > > > > > > > > > > > >> > > listed the following as part of your
"MET
> > > > > > > > > > > > >> > > Configuration
> > > > > > > > > > settings":
> > > > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7
-lpthread
> > > > > > > > > > > > >> > > -ldl
> > > > > > > > > > > > >> > > -lutil
> > > > > > > > > > > > >> > > -lm
> > > > > > > > > > > -Xlinker
> > > > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > However, in your config.log file it
looks
> > > > > > > > > > > > >> > > like
> > > > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > > > >> actually
> > > > > > > > > > > > >> > > set to be "-L/software/depot/anaconda-
> > > > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > > > -lpthread
> > > > > > > > > > > > >> > -ldl
> > > > > > > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic",
> > > > > > > > > > > > >> > > which
> > > > > > > > > > > > >> > > is
> > > > > > > > > > > > >> > > correct
> > > > > > > > > > > > >> > > because
> > > > > > > > > > you
> > > > > > > > > > > > >> need
> > > > > > > > > > > > >> > to
> > > > > > > > > > > > >> > > have that -L part in there, so I just
want
> > > > > > > > > > > > >> > > to
> > > > > > > > > > > > >> > > ensure
> > > > > > > > > > > > >> > > that
> > > > > > > > > > > > >> > > will
> > > > > > > > > > > stay
> > > > > > > > > > > > >> there
> > > > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > Thanks,
> > > > > > > > > > > > >> > > Julie
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos,
Mr.
> > > > > > > > > > > > >> > > Gregory,
> > > > > > > > > > > > >> > > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > <URL:
> > > > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > >
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > Configure.log has no meaningful info:
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
> > > > > > > > > > > > >> > > > configure.log
> > > > > > > > > > > > >> > > > -bash: [ramos at predict: command not
found
> > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu #90091]
> > > > > > > > > > > > >> > > > Help
> > > > > > > > > > > > >> > > > regarding
> > > > > > > > > > > > >> > > > MET
> > > > > > > > > > > > >> > > > 8.1
> > > > > > > > > > > > Julie
> > > > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > I'll go ahead and assign this ticket
to
> > > > > > > > > > > > >> > > > Julie,
> > > > > > > > > > > > >> > > > and
> > > > > > > > > > > > >> > > > she
> > > > > > > > > > > > >> > > > should
> > > > > > > > > > be
> > > > > > > > > > > > >> > writing
> > > > > > > > > > > > >> > > > you back in the next couple of days.
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > I do know she'll want to see both the
> > > > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > > > >> > > > file you
> > > > > > > > > > > > >> > generated
> > > > > > > > > > > > >> > > as
> > > > > > > > > > > > >> > > > well as the "config.log" file from
that
> > > > > > > > > > > > >> > > > same
> > > > > > > > > > > > >> > > > directory.
> > > > > > > > > > > > >> > > > So
> > > > > > > > > > > please
> > > > > > > > > > > > >> send
> > > > > > > > > > > > >> > > > those along when you get a chance.
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > > > >> > > > John
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM Ramos,
> > > > > > > > > > > > >> > > > Mr.
> > > > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request
> > > > > > > > > > > > >> > > > > 90091
> > > > > > > > > > > > >> > > > > was
> > > > > > > > > > > > >> > > > > acted
> > > > > > > > > > > > >> > > > > upon.
> > > > > > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > > > >> > > > > Subject: Help regarding MET 8.1
Julie
> > > > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > > > >> > > > > Requestors:
> > > > > > > > > > > > >> > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > >> > > > > Julie helped me compiled 8.0 using
gcc
> > > > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > > > >> > > > > and
> > > > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > > > 2.4.0.
> > > > > > > > > > > > >> The
> > > > > > > > > > > > >> > > user
> > > > > > > > > > > > >> > > > > asked for 8.1. I took notes last
time,
> > > > > > > > > > > > >> > > > > but
> > > > > > > > > > > > >> > > > > running
> > > > > > > > > > > > >> > > > > into
> > > > > > > > > > > > problems:
> > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > >> > > > > MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > >> >
> > > > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > > > >> > > > > export MET_GSL=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > >> > MET_PYTHON_CC=-I/software/depot/anaconda-
> > > > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv -O3
> > > > > > > > > > > > >> > > > > -Wall
> > > > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > > > >> > > > > export MET_HDF=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >>
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > > > >> > > > > export
MET_HDFEOS=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > >> > > > > export
MET_NETCDF=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > >> > > > > export
> > > > > > > > > > MET_CAIROLIB=/software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7
> > > > > > > > > > > > >> > > > > -lpthread
> > > > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > > > >> > > > > -lm
> > > > > > > > > > > > >> -Xlinker
> > > > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > > > >> > > > > export
MET_GRIB2C=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > >> > > > > export
MET_SUBDIR=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > >> > > > > MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > > > >> > > > > cd /software/depot/met-8.1/met-8.1
> > > > > > > > > > > > >> > > > > ./configure
> > > > > > > > > > > > >> > > > > --prefix=/software/depot/met-
> > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > >> --enable-grib2
> > > > > > > > > > > > >> > > > > --enable-modis --enable-
mode_graphics
> > > > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > > > >> > > configure.log
> > > > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > > > >> > > > > configure returned with non-zero
(127)
> > > > > > > > > > > > >> > > > > status
> > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > > >
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> > >
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >> >
> > > > > > > > > > > > >>
> > > > > > > > > > > > >>
> > > > > > > > > > > > >>
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> >
> >
> >
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Howard Soh
Time: Thu May 23 08:22:45 2019
No, they are not reliable. ascii2nc did not process the arguments. It
worked without argument which displays the usage (or help) message.
This happens to other executables.
Cheers,
Howard
On Wed May 22 19:05:44 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> That's fine. If the make test fails, doesn't that mean the
executables
> created aren't reliable?
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Wednesday, May 22, 2019 5:38 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> I'm sorry that MET code is not ready for newer GNU compiler. The
error
> with "make test" was caused by changed APIs from newer gnu compiler.
I
> fixed it for ascii2nc locally with updating two files. I tried few
MET
> tools and found more than 10 files should be updated.
>
> I think it's beyond helpdesk work. It's better to support the newer
> version GNU compiler with next release.
>
> Cheers,
> Howard
>
>
> On Wed May 22 12:47:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > Attached is the Makefile, just in case.
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Wednesday, May 22, 2019 11:34 AM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Would you run the same command manually and sen me the output?
> >
> > cd /software/depot/met-8.1a/met-8.1a/scripts
> > ../src/tools/other/ascii2nc/ascii2nc
> > ../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v
2
> > (NOTE: the same dcommand but one line instead of multiple lines)
> >
> > If the command works, would you send me Makefile at the current
> > directory.
> > If not working, please run following commands and send me
> > ascii2nc_test.log.
> >
> > ../src/tools/other/ascii2nc/ascii2nc
> > ../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v
5
> > -log ascii2nc_test.log
> >
> > ldd ../src/tools/other/ascii2nc/ascii2nc >> ascii2nc_test.log
> >
> >
> > Cheers,
> > Howard
> >
> >
> > On Wed May 22 11:26:02 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > Attached find my make.log and make_test.log
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Wednesday, May 22, 2019 7:11 AM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > The runntime NetCDF library is decided by LD_LIBRARY_PATH.
> > > LD_LIBRARY_PATH can be changed by module loading or by user
> > > configurations. If the problem happens with NetCDF, would you
ask
> > > them
> > > to run this command and check which NetCDF library is loaded?
> > >
> > > ldd bin/<MET_tool_name> | grep netcdf
> > > ldd bin/<MET_tool_name> | grep hdf
> > >
> > > for example,
> > > ldd bin/pb2nc | grep netcdf
> > > ldd bin/pb2nc | grep hdf
> > > ldd bin/grid_stat | grep netcdf
> > > ldd bin/grid_stat | grep hdf
> > >
> > > Note: There are dependency between NetCDF4 and HDF5.
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > OK, we have several people who are using the 8.1 version I
built.
> > > > We
> > > > use a central location:
> > > >
> > > > /software/depot
> > > >
> > > > To house all of our software. To be clear, the first build
went
> > > > OK,
> > > > it
> > > > was 'make test' that failed. So the users are using that, but
> > > > someone
> > > > ran into an error today and they asked me about NetCDF. I
think
> > > > it
> > > > was
> > > > their setup. The same build was used on two different
machines,
> > > > one
> > > > had an error, one didn't.
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Tuesday, May 21, 2019 5:50 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > > Prestopnik
> > > >
> > > > No, external libraries are not changed.
> > > >
> > > > Personally, I'm using newer NetCDF library (4.6.x instead of
> > > > 4.4.1.1).
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > > On Tue May 21 18:39:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > No, that is not what I am asking. Every time I build, I use
> > > > > your
> > > > > script which builds everything.
> > > > >
> > > > > What I am asking is, did the versions of the external
libraries
> > > > > change?
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Tuesday, May 21, 2019 5:34 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > Yes, the third party libraries should be compiled with newer
> > > > > version.
> > > > >
> > > > > The compile error with gnu 7.3.0 happens with gnu 6.3.0,
too.
> > > > > The fix/patch is not ready officially. One file has to be
> > > > > corrected
> > > > > to support newer version gnu compiler. Would you replace
> > > > > data_line.cc
> > > > > with attached file or modify it manually?
> > > > >
> > > > > Filename:
> > > > > met-8.1/src/basic/vx_util/data_line.cc
> > > > >
> > > > > line 202:
> > > > >
> > > > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > > > >
> > > > > line 218:
> > > > >
> > > > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > > On Tue May 21 18:21:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > Did new external libraries need to be built with 8.1?
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, May 16, 2019 4:01 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > No new tools but many enhancements.
> > > > > >
> > > > > > It's available at
> > > > > > https://dtcenter.org/community-code/model-evaluation-
tools-
> > > > > > met/met-
> > > > > > version-8-1
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > > On Thu May 16 16:46:32 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > Maybe you can answer one question while I try to
reinstall
> > > > > > > everything. What features does 8.1 provide over 8.0?
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Would try this command at /software/depot/met-8.1/met-
> > > > > > > 8.1/scripts
> > > > > > > directory?
> > > > > > >
> > > > > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > > > > echo $LD_LIBRARY_PATH
> > > > > > >
> > > > > > > 2. Save LD_LIBRARY_PATH
> > > > > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > > > > OR
> > > > > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > > > > >
> > > > > > > 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-
> > > > > > > 2.4.0/lib
> > > > > > >
> > > > > > > 4. Check which libgfortran.so at /software/depot/met-
> > > > > > > 8.1/met-
> > > > > > > 8.1/scripts directory.
> > > > > > >
> > > > > > > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran OR
> > > > > > > ldd
> > > > > > > ../bin/pb2nc | grep libgfortran
> > > > > > >
> > > > > > > 5. Check libgfortran version (should be
libgfortran.so.3,
> > > > > > > not
> > > > > > > so.4)
> > > > > > >
> > > > > > > 6. Run the failed command manually at
/software/depot/met-
> > > > > > > 8.1/met-
> > > > > > > 8.1/scripts directory if libgfortran.so.3.
> > > > > > >
> > > > > > > ../src/tools/other/pb2nc/pb2nc \
> > > > > > >
> > > > > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > > > > \
> > > > > > > ../out/pb2nc/sample_pb.nc \
> > > > > > > config/PB2NCConfig_G212 \
> > > > > > > -v 2
> > > > > > >
> > > > > > > 7. Change back LD_LIBRARY_PATH
> > > > > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > > > > OR
> > > > > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > > > > >
> > > > > > > Cheers,
> > > > > > > Howard
> > > > > > >
> > > > > > >
> > > > > > > On Thu May 16 15:28:16 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > wrote:
> > > > > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-
> > > > > > > > grib2-
> > > > > > > > support
> > > > > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > (0x0000003453800000)
> > > > > > > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > (0x0000003455800000)
> > > > > > > > libpng16.so.16 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libpng16.so.16
(0x00007f7f19d0c000)
> > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > (0x00007f7f19af4000)
> > > > > > > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > > > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > (0x00007f7f198a6000)
> > > > > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > (0x00007f7f19567000)
> > > > > > > > libgsl.so.19 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libgsl.so.19
(0x00007f7f19125000)
> > > > > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > (0x00007f7f18eeb000)
> > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > (0x00007f7f18c99000)
> > > > > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > > > (0x00007f7f18b58000)
> > > > > > > > libgcc_s.so.1 =>
> > > > > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > > > > (0x00007f7f18b42000)
> > > > > > > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > > > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > (0x00007f7f18922000)
> > > > > > > > libhdf5.so.10 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
(0x00007f7f18447000)
> > > > > > > > librt.so.1 => /lib64/librt.so.1
(0x0000003454400000)
> > > > > > > > [ramos at lorenz bin]$
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > MET is expecting "libpython2.7.so" to enable python
> > > > > > > > support.
> > > > > > > >
> > > > > > > > A log message shows the python was not enabled. Is
python
> > > > > > > > supporting is critical?
> > > > > > > >
> > > > > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > > > > > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > > > > > > --enable-lidar2nc > configure.log 2>&1
> > > > > > > >
> > > > > > > > If not, you can build/run MET 8.1 with gcc/gfortran
> > > > > > > > 4.4.7.
> > > > > > > > 1. Make sure python is not enabled
> > > > > > > > no "--enable-python" option for ./configure
> > > > > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
> > > > > > > > LD_LIBRARY_PATH at the build time and runtime both.
> > > > > > > >
> > > > > > > > Cheers,
> > > > > > > > Howard
> > > > > > > >
> > > > > > > > On Thu May 16 14:17:40 2019,
> > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > wrote:
> > > > > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > > > > >
> > > > > > > > > ramos at leo1:~> gcc --version
> > > > > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright (C)
> > > > > > > > > 2017
> > > > > > > > > Free
> > > > > > > > > Software Foundation, Inc.
> > > > > > > > > This is free software; see the source for copying
> > > > > > > > > conditions.
> > > > > > > > > There
> > > > > > > > > is NO
> > > > > > > > > warranty; not even for MERCHANTABILITY or FITNESS
FOR
> > > > > > > > > A
> > > > > > > > > PARTICULAR PURPOSE.
> > > > > > > > >
> > > > > > > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC)
> > > > > > > > > 7.3.0
> > > > > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free
Software
> > > > > > > > > Foundation, Inc.
> > > > > > > > > This is free software; see the source for copying
> > > > > > > > > conditions.
> > > > > > > > > There
> > > > > > > > > is NO
> > > > > > > > > warranty; not even for MERCHANTABILITY or FITNESS
FOR A
> > > > > > > > > PARTICULAR PURPOSE.
> > > > > > > > >
> > > > > > > > > ramos at leo1:~>
> > > > > > > > >
> > > > > > > > > We don't have that version on our Red Hat systems.
Met
> > > > > > > > > 8.0
> > > > > > > > > worked on RH, but 8.1 failed on the 'make test'. The
> > > > > > > > > user
> > > > > > > > > says
> > > > > > > > > she is fine with the executables so far. I will have
to
> > > > > > > > > build
> > > > > > > > > a
> > > > > > > > > gfortran 7.x version.
> > > > > > > > >
> > > > > > > > > Greg
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Hello,
> > > > > > > > >
> > > > > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > > > > >
> > > > > > > > > The problem was caused by the path for python
library
> > > > > > > > > (/software/depot/anaconda-2.4.0/lib).
libgfortran.so.4
> > > > > > > > > exists
> > > > > > > > > there
> > > > > > > > > from the ldd output. It was used on building MET.
MET
> > > > > > > > > was
> > > > > > > > > compiled
> > > > > > > > > with gcc 4.4.7 which supports only libgfortran.so.3,
> > > > > > > > > and
> > > > > > > > > linked
> > > > > > > > > with
> > > > > > > > > libgfortran.so.4 because of MET_PYTHON_LD
> > > > > > > > > configuration.
> > > > > > > > > Some
> > > > > > > > > libraries do not support the backward compatibility.
> > > > > > > > > libgfortran.so
> > > > > > > > > is
> > > > > > > > > one of them. In this case, the compiler version and
> > > > > > > > > library
> > > > > > > > > version
> > > > > > > > > should match.
> > > > > > > > >
> > > > > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
> > > > > > > > > 8.1/bin/pb2nc
> > > > > > > > > |grep
> > > > > > > > > gfortran
> > > > > > > > > libgfortran.so.4 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > > > > >
> > > > > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-
> > > > > > > > > 2.4.0/lib\
> > > > > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\
> > > > > > > > > -export-
> > > > > > > > > dynamic
> > > > > > > > >
> > > > > > > > > The solution is compiling third party libraries and
MET
> > > > > > > > > with
> > > > > > > > > version
> > > > > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > > > > > > > libgfortran.so.5,
> > > > > > > > > So the same problem will happen if MET is built with
> > > > > > > > > gcc/gfortran
> > > > > > > > > 6.x
> > > > > > > > > or gcc/gfortran 8.x.
> > > > > > > > >
> > > > > > > > > Cheers,
> > > > > > > > > Howard
> > > > > > > > >
> > > > > > > > > On Mon May 13 18:36:04 2019,
> > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > wrote:
> > > > > > > > > > Attached is the config.log for NetCDf it shows
> > > > > > > > > > /usr/bin/gcc
> > > > > > > > > >
> > > > > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red
Hat
> > > > > > > > > > version.
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > > > MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > Thank you. Unfortunately, that does not tell me
if
> > > > > > > > > > the
> > > > > > > > > > libraries
> > > > > > > > > > and
> > > > > > > > > > the
> > > > > > > > > > MET code were built with the same version of the
> > > > > > > > > > compiler.
> > > > > > > > > > I
> > > > > > > > > > also
> > > > > > > > > > do
> > > > > > > > > > not
> > > > > > > > > > see bufrlib in that list.
> > > > > > > > > >
> > > > > > > > > > Can you please tell me - were the libraries and
the
> > > > > > > > > > MET
> > > > > > > > > > code
> > > > > > > > > > built
> > > > > > > > > > with the
> > > > > > > > > > same version of the compiler? I'm checking to see
> > > > > > > > > > if,
> > > > > > > > > > for
> > > > > > > > > > example,
> > > > > > > > > > the
> > > > > > > > > > libraries were built with gcc-6.3.0 but the MET
code
> > > > > > > > > > was
> > > > > > > > > > build
> > > > > > > > > > with
> > > > > > > > > > gcc-4.4.7.
> > > > > > > > > >
> > > > > > > > > > Thanks!
> > > > > > > > > >
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr.
Gregory,
> > > > > > > > > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > > 7501.1
> > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > <URL:
> > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > You can see I am using those libraries for MET
> > > > > > > > > > > 8.1:
> > > > > > > > > > >
> > > > > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > 2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > > > > libpthread.so.0 =>
/lib64/libpthread.so.0
> > > > > > > > > > > (0x00002ab75e63b000)
> > > > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > > > (0x00002ab75e858000)
> > > > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > > > > libpng16.so.16 =>
> > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > > > (0x00002ab75ec60000)
> > > > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > > > (0x00002ab75ee92000)
> > > > > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > > > (0x00002ab75f32f000)
> > > > > > > > > > > libnetcdf.so.11 =>
> > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > > > (0x00002ab75f57c000)
> > > > > > > > > > > libgsl.so.19 =>
> > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > > > > libgslcblas.so.0 =>
> > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > > > > libjpeg.so.9 =>
/software/depot/anaconda-
> > > > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > > > (0x00002ab75ff37000)
> > > > > > > > > > > libstdc++.so.6 =>
> > > > > > > > > > > /software/depot/anaconda-
2.4.0/lib/libstdc++.so.6
> > > > > > > > > > > (0x00002ab760189000)
> > > > > > > > > > > libgcc_s.so.1 =>
/software/depot/anaconda-
> > > > > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > > > > (0x00002ab7602cb000)
> > > > > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > > > > (0x00002ab7602e0000)
> > > > > > > > > > > /lib64/ld-linux-x86-64.so.2
> > > > > > > > > > > (0x0000559353f4f000)
> > > > > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > > > (0x00002ab760675000)
> > > > > > > > > > > libhdf5.so.10 =>
> > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > > > (0x00002ab760894000)
> > > > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > > > (0x00002ab760d6f000)
> > > > > > > > > > > [root at maury2 bin]#
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > regarding
> > > > > > > > > > > MET
> > > > > > > > > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > Prestopnik
> > > > > > > > > > >
> > > > > > > > > > > Thank you, Greg. Can you please tell me - were
the
> > > > > > > > > > > libraries
> > > > > > > > > > > and
> > > > > > > > > > > the
> > > > > > > > > > > MET
> > > > > > > > > > > code built with the same version of the
compiler.
> > > > > > > > > > > I'm
> > > > > > > > > > > checking
> > > > > > > > > > > to
> > > > > > > > > > > see if,
> > > > > > > > > > > for example, the libraries were built with gcc-
> > > > > > > > > > > 6.3.0
> > > > > > > > > > > but
> > > > > > > > > > > the
> > > > > > > > > > > MET
> > > > > > > > > > > code
> > > > > > > > > > > was
> > > > > > > > > > > build with gcc-4.4.7.
> > > > > > > > > > >
> > > > > > > > > > > It sounds like we need the libraries and the MET
> > > > > > > > > > > code
> > > > > > > > > > > to
> > > > > > > > > > > be
> > > > > > > > > > > built
> > > > > > > > > > > with the
> > > > > > > > > > > same version of the compiler, in this case.
> > > > > > > > > > >
> > > > > > > > > > > Thanks for any information you can provide.
> > > > > > > > > > >
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr.
Gregory,
> > > > > > > > > > > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > > 7501.1
> > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > <URL:
> > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > Find the logs attached.
> > > > > > > > > > > >
> > > > > > > > > > > > Greg
> > > > > > > > > > > >
> > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > regarding
> > > > > > > > > > > > MET
> > > > > > > > > > > > 8.1
> > > > > > > > > > > > Julie
> > > > > > > > > > > > Prestopnik
> > > > > > > > > > > >
> > > > > > > > > > > > Could you please run the following:
> > > > > > > > > > > >
> > > > > > > > > > > > which pb2nc
> > > > > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > > > > >
> > > > > > > > > > > > and send me the output?
> > > > > > > > > > > >
> > > > > > > > > > > > Please also send your config.log and make.log
> > > > > > > > > > > > file.
> > > > > > > > > > > >
> > > > > > > > > > > > Thank you!
> > > > > > > > > > > >
> > > > > > > > > > > > Julie
> > > > > > > > > > > >
> > > > > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr.
> > > > > > > > > > > > Gregory,
> > > > > > > > > > > > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > 7501.1
> > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > <URL:
> > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > I used the buildscript. It should build all
of
> > > > > > > > > > > > > the
> > > > > > > > > > > > > external
> > > > > > > > > > > > > libraries,
> > > > > > > > > > > so
> > > > > > > > > > > > > I believe everything was built with the same
> > > > > > > > > > > > > compiler.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Greg
> > > > > > > > > > > > >
> > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > > regarding
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > >
> > > > > > > > > > > > > Hi Greg. Our developer suspects it may be a
> > > > > > > > > > > > > mismatched
> > > > > > > > > > > compiler/library
> > > > > > > > > > > > > version. Was BUFRLIB installed with the
same
> > > > > > > > > > > > > compiler
> > > > > > > > > > > > > as
> > > > > > > > > > > > > MET?
> > > > > > > > > > > > > Also,
> > > > > > > > > > > > what
> > > > > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > > > > >
> > > > > > > > > > > > > Thanks,
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > >
> > > > > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie
> > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > > > > wrote:
> > > > > > > > > > > > >
> > > > > > > > > > > > > > Hi Greg. I am checking in with another
> > > > > > > > > > > > > > developer
> > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > the
> > > > > > > > > > > > > > error
> > > > > > > > > > > > you
> > > > > > > > > > > > > > experienced. Thank you for your patience.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr.
> > > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> <URL:
> > > > > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-
23)
> > > > > > > > > > > > > >> Copyright (C) 2010 Free Software
Foundation,
> > > > > > > > > > > > > >> Inc.
> > > > > > > > > > > > > >> This is free software; see the source for
> > > > > > > > > > > > > >> copying
> > > > > > > > > > > > > >> conditions.
> > > > > > > > > > > > > >> There
> > > > > > > > > > > > is
> > > > > > > > > > > > > NO
> > > > > > > > > > > > > >> warranty; not even for MERCHANTABILITY or
> > > > > > > > > > > > > >> FITNESS
> > > > > > > > > > > > > >> FOR
> > > > > > > > > > > > > >> A
> > > > > > > > > > > > > >> PARTICULAR
> > > > > > > > > > > > > >> PURPOSE.
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> Not all of the tests passed, please see
> > > > > > > > > > > > > >> attachment.
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> Greg
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > > > >> regarding
> > > > > > > > > > > > > >> MET
> > > > > > > > > > > > > >> 8.1
> > > > > > > > > > > > > >> Julie
> > > > > > > > > > > > > >> Prestopnik
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> Thank you for letting me know. I will
> > > > > > > > > > > > > >> proceed
> > > > > > > > > > > > > >> with
> > > > > > > > > > > > > >> trying
> > > > > > > > > > > > > >> to
> > > > > > > > > > > > reproduce
> > > > > > > > > > > > > >> the
> > > > > > > > > > > > > >> problem using the gcc-6.3.0. I will
follow
> > > > > > > > > > > > > >> up
> > > > > > > > > > > > > >> once
> > > > > > > > > > > > > >> I
> > > > > > > > > > > > > >> have
> > > > > > > > > > > > > >> more
> > > > > > > > > > > > > >> information.
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> Julie
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr.
> > > > > > > > > > > > > >> Gregory,
> > > > > > > > > > > > > >> Contractor,
> > > > > > > > > > > > > >> Code
> > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > <URL:
> > > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > When I compiled MET 8.0 the last time,
it
> > > > > > > > > > > > > >> > worked.
> > > > > > > > > > > > > >> > I
> > > > > > > > > > > > > >> > was
> > > > > > > > > > > > > >> > also
> > > > > > > > > > > > > >> > able
> > > > > > > > > > > to
> > > > > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > > > > >> > Password:
> > > > > > > > > > > > > >> > Last login: Thu May 9 17:38:30 2019
from
> > > > > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > You are accessing a U.S. Government
(USG)
> > > > > > > > > > > > > >> > Information
> > > > > > > > > > > > > >> > System
> > > > > > > > > > > > > >> > (IS)
> > > > > > > > > > > > that
> > > > > > > > > > > > > >> is
> > > > > > > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > > > > > > >> > By using this IS (which includes any
> > > > > > > > > > > > > >> > device
> > > > > > > > > > > > > >> > attached
> > > > > > > > > > > > > >> > to
> > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > >> > IS),
> > > > > > > > > > > > you
> > > > > > > > > > > > > >> > consent to the following conditions:
> > > > > > > > > > > > > >> > -The USG routinely intercepts and
monitors
> > > > > > > > > > > > > >> > communications
> > > > > > > > > > > > > >> > on
> > > > > > > > > > > > > >> > this
> > > > > > > > > > > IS
> > > > > > > > > > > > > for
> > > > > > > > > > > > > >> > purposes including, but not limited to,
> > > > > > > > > > > > > >> > penetration testing, COMSEC monitoring,
> > > > > > > > > > > > > >> > network
> > > > > > > > > > > > > >> > operations
> > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > defense,
> > > > > > > > > > > > > >> > personnel misconduct (PM), law
enforcement
> > > > > > > > > > > > > >> > (LE),
> > > > > > > > > > > > > >> > and counterintelligence (CI)
> > > > > > > > > > > > > >> > investigations.
> > > > > > > > > > > > > >> > -At any time, the USG may inspect and
> > > > > > > > > > > > > >> > seize
> > > > > > > > > > > > > >> > data
> > > > > > > > > > > > > >> > stored
> > > > > > > > > > > > > >> > on
> > > > > > > > > > > > > >> > this
> > > > > > > > > > > IS.
> > > > > > > > > > > > > >> > -Communications using, or data stored
on,
> > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > >> > IS
> > > > > > > > > > > > > >> > are
> > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > >> > private,
> > > > > > > > > > > > are
> > > > > > > > > > > > > >> > subject to routine monitoring,
> > > > > > > > > > > > > >> > interception,
> > > > > > > > > > > > > >> > and search, and may be disclosed or
used
> > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > >> > any
> > > > > > > > > > > > > >> > USG-
> > > > > > > > > > > > > >> > authorized
> > > > > > > > > > > > > purpose.
> > > > > > > > > > > > > >> > -This IS includes security measures
(e.g.,
> > > > > > > > > > > > > >> > authentication
> > > > > > > > > > > > > >> > and
> > > > > > > > > > > access
> > > > > > > > > > > > > >> > controls) to protect USG interests --
not
> > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > > > > >> > -Notwithstanding the above, using this
IS
> > > > > > > > > > > > > >> > does
> > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > >> > constitute
> > > > > > > > > > > > consent
> > > > > > > > > > > > > to
> > > > > > > > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > > > > > > > >> > monitoring of the content of privileged
> > > > > > > > > > > > > >> > communications,
> > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > >> > work
> > > > > > > > > > > > > product,
> > > > > > > > > > > > > >> > related to personal representation or
> > > > > > > > > > > > > >> > services by attorneys,
psychotherapists,
> > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > >> > clergy,
> > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > >> > their
> > > > > > > > > > > > > >> assistants.
> > > > > > > > > > > > > >> > Such communications and work product
are
> > > > > > > > > > > > > >> > private and confidential. See User
> > > > > > > > > > > > > >> > Agreement
> > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > >> > details.
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > > > >> > regarding
> > > > > > > > > > > > > >> > MET
> > > > > > > > > > > > > >> > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > > > >> > Prestopnik
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > Hi Gregory. I have not tested with
> > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > >> > 6.3.0
> > > > > > > > > > > > > >> > of
> > > > > > > > > > > > > >> > the
> > > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > compiler,
> > > > > > > > > > > > > >> but
> > > > > > > > > > > > > >> > rather only with lower versions
> > > > > > > > > > > > > >> > (specifically
> > > > > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > > > > >> > We
> > > > > > > > > > > > > >> > would,
> > > > > > > > > > > of
> > > > > > > > > > > > > >> course,
> > > > > > > > > > > > > >> > want our code to work with higher
versions
> > > > > > > > > > > > > >> > as
> > > > > > > > > > > > > >> > well.
> > > > > > > > > > > > > >> > I
> > > > > > > > > > > > > >> > have
> > > > > > > > > > > > > >> > not
> > > > > > > > > > > yet
> > > > > > > > > > > > > had
> > > > > > > > > > > > > >> an
> > > > > > > > > > > > > >> > opportunity to test with a higher
version
> > > > > > > > > > > > > >> > like
> > > > > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > > > > >> > Do
> > > > > > > > > > > > > >> > you have
> > > > > > > > > > > > the
> > > > > > > > > > > > > >> > ability to compile MET using a lesser
> > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > >> > of
> > > > > > > > > > > > > >> > the
> > > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > > >> > compiler
> > > > > > > > > > > to
> > > > > > > > > > > > > >> see if
> > > > > > > > > > > > > >> > that clears up the issues you are
> > > > > > > > > > > > > >> > experiencing?
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > Julie
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos,
Mr.
> > > > > > > > > > > > > >> > Gregory,
> > > > > > > > > > > > > >> > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > <URL:
> > > > > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > Greg
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091]
> > > > > > > > > > > > > >> > > Help
> > > > > > > > > > > > > >> > > regarding
> > > > > > > > > > > > > >> > > MET
> > > > > > > > > > > > > >> > > 8.1
> > > > > > > > > > > > Julie
> > > > > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > Hi Greg. Thank you for passing along
> > > > > > > > > > > > > >> > > your
> > > > > > > > > > > > > >> > > config.log
> > > > > > > > > > > > > >> > > file. I
> > > > > > > > > > > > see a
> > > > > > > > > > > > > >> > couple
> > > > > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > Based on those errors, it looks like
you
> > > > > > > > > > > > > >> > > may
> > > > > > > > > > > > > >> > > not
> > > > > > > > > > > > > >> > > have
> > > > > > > > > > > > > >> > > flex
> > > > > > > > > > > > > >> > > and
> > > > > > > > > > > > bison
> > > > > > > > > > > > > >> > > installed. Please install those and
try
> > > > > > > > > > > > > >> > > running
> > > > > > > > > > > > > >> > > configure
> > > > > > > > > > > again.
> > > > > > > > > > > > > >> Please
> > > > > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > Also, I just wanted to address one
other
> > > > > > > > > > > > > >> > > thing.
> > > > > > > > > > > > > >> > > In
> > > > > > > > > > > > > >> > > your
> > > > > > > > > > > original
> > > > > > > > > > > > > >> email
> > > > > > > > > > > > > >> > you
> > > > > > > > > > > > > >> > > listed the following as part of your
> > > > > > > > > > > > > >> > > "MET
> > > > > > > > > > > > > >> > > Configuration
> > > > > > > > > > > settings":
> > > > > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7
> > > > > > > > > > > > > >> > > -lpthread
> > > > > > > > > > > > > >> > > -ldl
> > > > > > > > > > > > > >> > > -lutil
> > > > > > > > > > > > > >> > > -lm
> > > > > > > > > > > > -Xlinker
> > > > > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > However, in your config.log file it
> > > > > > > > > > > > > >> > > looks
> > > > > > > > > > > > > >> > > like
> > > > > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > > > > >> actually
> > > > > > > > > > > > > >> > > set to be "-
L/software/depot/anaconda-
> > > > > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > > > > -lpthread
> > > > > > > > > > > > > >> > -ldl
> > > > > > > > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic",
> > > > > > > > > > > > > >> > > which
> > > > > > > > > > > > > >> > > is
> > > > > > > > > > > > > >> > > correct
> > > > > > > > > > > > > >> > > because
> > > > > > > > > > > you
> > > > > > > > > > > > > >> need
> > > > > > > > > > > > > >> > to
> > > > > > > > > > > > > >> > > have that -L part in there, so I just
> > > > > > > > > > > > > >> > > want
> > > > > > > > > > > > > >> > > to
> > > > > > > > > > > > > >> > > ensure
> > > > > > > > > > > > > >> > > that
> > > > > > > > > > > > > >> > > will
> > > > > > > > > > > > stay
> > > > > > > > > > > > > >> there
> > > > > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > Thanks,
> > > > > > > > > > > > > >> > > Julie
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos,
> > > > > > > > > > > > > >> > > Mr.
> > > > > > > > > > > > > >> > > Gregory,
> > > > > > > > > > > > > >> > > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > <URL:
> > > > > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > Configure.log has no meaningful
info:
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
> > > > > > > > > > > > > >> > > > configure.log
> > > > > > > > > > > > > >> > > > -bash: [ramos at predict: command not
> > > > > > > > > > > > > >> > > > found
> > > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor,
> > > > > > > > > > > > > >> > > > Code
> > > > > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu
#90091]
> > > > > > > > > > > > > >> > > > Help
> > > > > > > > > > > > > >> > > > regarding
> > > > > > > > > > > > > >> > > > MET
> > > > > > > > > > > > > >> > > > 8.1
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > I'll go ahead and assign this
ticket
> > > > > > > > > > > > > >> > > > to
> > > > > > > > > > > > > >> > > > Julie,
> > > > > > > > > > > > > >> > > > and
> > > > > > > > > > > > > >> > > > she
> > > > > > > > > > > > > >> > > > should
> > > > > > > > > > > be
> > > > > > > > > > > > > >> > writing
> > > > > > > > > > > > > >> > > > you back in the next couple of
days.
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > I do know she'll want to see both
the
> > > > > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > > > > >> > > > file you
> > > > > > > > > > > > > >> > generated
> > > > > > > > > > > > > >> > > as
> > > > > > > > > > > > > >> > > > well as the "config.log" file from
> > > > > > > > > > > > > >> > > > that
> > > > > > > > > > > > > >> > > > same
> > > > > > > > > > > > > >> > > > directory.
> > > > > > > > > > > > > >> > > > So
> > > > > > > > > > > > please
> > > > > > > > > > > > > >> send
> > > > > > > > > > > > > >> > > > those along when you get a chance.
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > > > > >> > > > John
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM
Ramos,
> > > > > > > > > > > > > >> > > > Mr.
> > > > > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > > > Code
> > > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request
> > > > > > > > > > > > > >> > > > > 90091
> > > > > > > > > > > > > >> > > > > was
> > > > > > > > > > > > > >> > > > > acted
> > > > > > > > > > > > > >> > > > > upon.
> > > > > > > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > > > > >> > > > > Subject: Help regarding MET 8.1
> > > > > > > > > > > > > >> > > > > Julie
> > > > > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > > > > >> > > > > Requestors:
> > > > > > > > > > > > > >> > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > >> > > > > Julie helped me compiled 8.0
using
> > > > > > > > > > > > > >> > > > > gcc
> > > > > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > > > > >> > > > > and
> > > > > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > > > > 2.4.0.
> > > > > > > > > > > > > >> The
> > > > > > > > > > > > > >> > > user
> > > > > > > > > > > > > >> > > > > asked for 8.1. I took notes last
> > > > > > > > > > > > > >> > > > > time,
> > > > > > > > > > > > > >> > > > > but
> > > > > > > > > > > > > >> > > > > running
> > > > > > > > > > > > > >> > > > > into
> > > > > > > > > > > > > problems:
> > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > > > > MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > > > > >> > > > > export
MET_GSL=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > MET_PYTHON_CC=-
I/software/depot/anaconda-
> > > > > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv
-O3
> > > > > > > > > > > > > >> > > > > -Wall
> > > > > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > > > > >> > > > > export
MET_HDF=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >>
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > > > > MET_HDFEOS=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > > > > MET_NETCDF=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > MET_CAIROLIB=/software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7
> > > > > > > > > > > > > >> > > > > -lpthread
> > > > > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > > > > >> > > > > -lm
> > > > > > > > > > > > > >> -Xlinker
> > > > > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > > > > MET_GRIB2C=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > > > > MET_SUBDIR=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > > > > MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > >> > > > > cd /software/depot/met-8.1/met-
8.1
> > > > > > > > > > > > > >> > > > > ./configure
> > > > > > > > > > > > > >> > > > > --prefix=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > >> --enable-grib2
> > > > > > > > > > > > > >> > > > > --enable-modis --enable-
> > > > > > > > > > > > > >> > > > > mode_graphics
> > > > > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > > > > >> > > configure.log
> > > > > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > > > > >> > > > > configure returned with non-zero
> > > > > > > > > > > > > >> > > > > (127)
> > > > > > > > > > > > > >> > > > > status
> > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >>
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > >
> > >
> > >
> >
> >
> >
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Thu May 23 09:47:54 2019
Even gcc 4.4.7 had problems. See attachment.
Greg
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Thursday, May 23, 2019 7:23 AM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
No, they are not reliable. ascii2nc did not process the arguments. It
worked without argument which displays the usage (or help) message.
This happens to other executables.
Cheers,
Howard
On Wed May 22 19:05:44 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> That's fine. If the make test fails, doesn't that mean the
executables
> created aren't reliable?
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Wednesday, May 22, 2019 5:38 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> I'm sorry that MET code is not ready for newer GNU compiler. The
error
> with "make test" was caused by changed APIs from newer gnu compiler.
I
> fixed it for ascii2nc locally with updating two files. I tried few
MET
> tools and found more than 10 files should be updated.
>
> I think it's beyond helpdesk work. It's better to support the newer
> version GNU compiler with next release.
>
> Cheers,
> Howard
>
>
> On Wed May 22 12:47:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > Attached is the Makefile, just in case.
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Wednesday, May 22, 2019 11:34 AM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Would you run the same command manually and sen me the output?
> >
> > cd /software/depot/met-8.1a/met-8.1a/scripts
> > ../src/tools/other/ascii2nc/ascii2nc
> > ../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v
2
> > (NOTE: the same dcommand but one line instead of multiple lines)
> >
> > If the command works, would you send me Makefile at the current
> > directory.
> > If not working, please run following commands and send me
> > ascii2nc_test.log.
> >
> > ../src/tools/other/ascii2nc/ascii2nc
> > ../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc -v
5
> > -log ascii2nc_test.log
> >
> > ldd ../src/tools/other/ascii2nc/ascii2nc >> ascii2nc_test.log
> >
> >
> > Cheers,
> > Howard
> >
> >
> > On Wed May 22 11:26:02 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > Attached find my make.log and make_test.log
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Wednesday, May 22, 2019 7:11 AM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > The runntime NetCDF library is decided by LD_LIBRARY_PATH.
> > > LD_LIBRARY_PATH can be changed by module loading or by user
> > > configurations. If the problem happens with NetCDF, would you
ask
> > > them
> > > to run this command and check which NetCDF library is loaded?
> > >
> > > ldd bin/<MET_tool_name> | grep netcdf
> > > ldd bin/<MET_tool_name> | grep hdf
> > >
> > > for example,
> > > ldd bin/pb2nc | grep netcdf
> > > ldd bin/pb2nc | grep hdf
> > > ldd bin/grid_stat | grep netcdf
> > > ldd bin/grid_stat | grep hdf
> > >
> > > Note: There are dependency between NetCDF4 and HDF5.
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > OK, we have several people who are using the 8.1 version I
built.
> > > > We
> > > > use a central location:
> > > >
> > > > /software/depot
> > > >
> > > > To house all of our software. To be clear, the first build
went
> > > > OK,
> > > > it
> > > > was 'make test' that failed. So the users are using that, but
> > > > someone
> > > > ran into an error today and they asked me about NetCDF. I
think
> > > > it
> > > > was
> > > > their setup. The same build was used on two different
machines,
> > > > one
> > > > had an error, one didn't.
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Tuesday, May 21, 2019 5:50 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > > Prestopnik
> > > >
> > > > No, external libraries are not changed.
> > > >
> > > > Personally, I'm using newer NetCDF library (4.6.x instead of
> > > > 4.4.1.1).
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > > On Tue May 21 18:39:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > No, that is not what I am asking. Every time I build, I use
> > > > > your
> > > > > script which builds everything.
> > > > >
> > > > > What I am asking is, did the versions of the external
libraries
> > > > > change?
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Tuesday, May 21, 2019 5:34 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > Yes, the third party libraries should be compiled with newer
> > > > > version.
> > > > >
> > > > > The compile error with gnu 7.3.0 happens with gnu 6.3.0,
too.
> > > > > The fix/patch is not ready officially. One file has to be
> > > > > corrected
> > > > > to support newer version gnu compiler. Would you replace
> > > > > data_line.cc
> > > > > with attached file or modify it manually?
> > > > >
> > > > > Filename:
> > > > > met-8.1/src/basic/vx_util/data_line.cc
> > > > >
> > > > > line 202:
> > > > >
> > > > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > > > >
> > > > > line 218:
> > > > >
> > > > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > > > out << prefix << sstream.str() << Line.substr(j) << "\"\n";
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > > On Tue May 21 18:21:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > Did new external libraries need to be built with 8.1?
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Thursday, May 16, 2019 4:01 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > No new tools but many enhancements.
> > > > > >
> > > > > > It's available at
> > > > > > https://dtcenter.org/community-code/model-evaluation-
tools-
> > > > > > met/met-
> > > > > > version-8-1
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > > On Thu May 16 16:46:32 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > Maybe you can answer one question while I try to
reinstall
> > > > > > > everything. What features does 8.1 provide over 8.0?
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Would try this command at /software/depot/met-8.1/met-
> > > > > > > 8.1/scripts
> > > > > > > directory?
> > > > > > >
> > > > > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > > > > echo $LD_LIBRARY_PATH
> > > > > > >
> > > > > > > 2. Save LD_LIBRARY_PATH
> > > > > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > > > > OR
> > > > > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > > > > >
> > > > > > > 3. Set LD_LIBRARY_PATH without /software/depot/anaconda-
> > > > > > > 2.4.0/lib
> > > > > > >
> > > > > > > 4. Check which libgfortran.so at /software/depot/met-
> > > > > > > 8.1/met-
> > > > > > > 8.1/scripts directory.
> > > > > > >
> > > > > > > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran OR
> > > > > > > ldd
> > > > > > > ../bin/pb2nc | grep libgfortran
> > > > > > >
> > > > > > > 5. Check libgfortran version (should be
libgfortran.so.3,
> > > > > > > not
> > > > > > > so.4)
> > > > > > >
> > > > > > > 6. Run the failed command manually at
/software/depot/met-
> > > > > > > 8.1/met-
> > > > > > > 8.1/scripts directory if libgfortran.so.3.
> > > > > > >
> > > > > > > ../src/tools/other/pb2nc/pb2nc \
> > > > > > >
> > > > > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > > > > \
> > > > > > > ../out/pb2nc/sample_pb.nc \
> > > > > > > config/PB2NCConfig_G212 \
> > > > > > > -v 2
> > > > > > >
> > > > > > > 7. Change back LD_LIBRARY_PATH
> > > > > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > > > > OR
> > > > > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > > > > >
> > > > > > > Cheers,
> > > > > > > Howard
> > > > > > >
> > > > > > >
> > > > > > > On Thu May 16 15:28:16 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > wrote:
> > > > > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-with-
> > > > > > > > grib2-
> > > > > > > > support
> > > > > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > (0x0000003453800000)
> > > > > > > > libdl.so.2 => /lib64/libdl.so.2 (0x0000003453400000)
> > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > (0x0000003455800000)
> > > > > > > > libpng16.so.16 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libpng16.so.16
(0x00007f7f19d0c000)
> > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > (0x00007f7f19af4000)
> > > > > > > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > > > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > (0x00007f7f198a6000)
> > > > > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > (0x00007f7f19567000)
> > > > > > > > libgsl.so.19 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libgsl.so.19
(0x00007f7f19125000)
> > > > > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > (0x00007f7f18eeb000)
> > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > (0x00007f7f18c99000)
> > > > > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > > > (0x00007f7f18b58000)
> > > > > > > > libgcc_s.so.1 =>
> > > > > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > > > > (0x00007f7f18b42000)
> > > > > > > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > > > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > (0x00007f7f18922000)
> > > > > > > > libhdf5.so.10 => /software/depot/met-
> > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
(0x00007f7f18447000)
> > > > > > > > librt.so.1 => /lib64/librt.so.1
(0x0000003454400000)
> > > > > > > > [ramos at lorenz bin]$
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > MET is expecting "libpython2.7.so" to enable python
> > > > > > > > support.
> > > > > > > >
> > > > > > > > A log message shows the python was not enabled. Is
python
> > > > > > > > supporting is critical?
> > > > > > > >
> > > > > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > > > > > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > > > > > > --enable-lidar2nc > configure.log 2>&1
> > > > > > > >
> > > > > > > > If not, you can build/run MET 8.1 with gcc/gfortran
> > > > > > > > 4.4.7.
> > > > > > > > 1. Make sure python is not enabled
> > > > > > > > no "--enable-python" option for ./configure
> > > > > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib" from
> > > > > > > > LD_LIBRARY_PATH at the build time and runtime both.
> > > > > > > >
> > > > > > > > Cheers,
> > > > > > > > Howard
> > > > > > > >
> > > > > > > > On Thu May 16 14:17:40 2019,
> > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > wrote:
> > > > > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > > > > >
> > > > > > > > > ramos at leo1:~> gcc --version
> > > > > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright (C)
> > > > > > > > > 2017
> > > > > > > > > Free
> > > > > > > > > Software Foundation, Inc.
> > > > > > > > > This is free software; see the source for copying
> > > > > > > > > conditions.
> > > > > > > > > There
> > > > > > > > > is NO
> > > > > > > > > warranty; not even for MERCHANTABILITY or FITNESS
FOR
> > > > > > > > > A
> > > > > > > > > PARTICULAR PURPOSE.
> > > > > > > > >
> > > > > > > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC)
> > > > > > > > > 7.3.0
> > > > > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free
Software
> > > > > > > > > Foundation, Inc.
> > > > > > > > > This is free software; see the source for copying
> > > > > > > > > conditions.
> > > > > > > > > There
> > > > > > > > > is NO
> > > > > > > > > warranty; not even for MERCHANTABILITY or FITNESS
FOR A
> > > > > > > > > PARTICULAR PURPOSE.
> > > > > > > > >
> > > > > > > > > ramos at leo1:~>
> > > > > > > > >
> > > > > > > > > We don't have that version on our Red Hat systems.
Met
> > > > > > > > > 8.0
> > > > > > > > > worked on RH, but 8.1 failed on the 'make test'. The
> > > > > > > > > user
> > > > > > > > > says
> > > > > > > > > she is fine with the executables so far. I will have
to
> > > > > > > > > build
> > > > > > > > > a
> > > > > > > > > gfortran 7.x version.
> > > > > > > > >
> > > > > > > > > Greg
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Hello,
> > > > > > > > >
> > > > > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > > > > >
> > > > > > > > > The problem was caused by the path for python
library
> > > > > > > > > (/software/depot/anaconda-2.4.0/lib).
libgfortran.so.4
> > > > > > > > > exists
> > > > > > > > > there
> > > > > > > > > from the ldd output. It was used on building MET.
MET
> > > > > > > > > was
> > > > > > > > > compiled
> > > > > > > > > with gcc 4.4.7 which supports only libgfortran.so.3,
> > > > > > > > > and
> > > > > > > > > linked
> > > > > > > > > with
> > > > > > > > > libgfortran.so.4 because of MET_PYTHON_LD
> > > > > > > > > configuration.
> > > > > > > > > Some
> > > > > > > > > libraries do not support the backward compatibility.
> > > > > > > > > libgfortran.so
> > > > > > > > > is
> > > > > > > > > one of them. In this case, the compiler version and
> > > > > > > > > library
> > > > > > > > > version
> > > > > > > > > should match.
> > > > > > > > >
> > > > > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
> > > > > > > > > 8.1/bin/pb2nc
> > > > > > > > > |grep
> > > > > > > > > gfortran
> > > > > > > > > libgfortran.so.4 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > > > > >
> > > > > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-
> > > > > > > > > 2.4.0/lib\
> > > > > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\ -Xlinker\
> > > > > > > > > -export-
> > > > > > > > > dynamic
> > > > > > > > >
> > > > > > > > > The solution is compiling third party libraries and
MET
> > > > > > > > > with
> > > > > > > > > version
> > > > > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran supports
> > > > > > > > > libgfortran.so.5,
> > > > > > > > > So the same problem will happen if MET is built with
> > > > > > > > > gcc/gfortran
> > > > > > > > > 6.x
> > > > > > > > > or gcc/gfortran 8.x.
> > > > > > > > >
> > > > > > > > > Cheers,
> > > > > > > > > Howard
> > > > > > > > >
> > > > > > > > > On Mon May 13 18:36:04 2019,
> > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > wrote:
> > > > > > > > > > Attached is the config.log for NetCDf it shows
> > > > > > > > > > /usr/bin/gcc
> > > > > > > > > >
> > > > > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red
Hat
> > > > > > > > > > version.
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > > > MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > Thank you. Unfortunately, that does not tell me
if
> > > > > > > > > > the
> > > > > > > > > > libraries
> > > > > > > > > > and
> > > > > > > > > > the
> > > > > > > > > > MET code were built with the same version of the
> > > > > > > > > > compiler.
> > > > > > > > > > I
> > > > > > > > > > also
> > > > > > > > > > do
> > > > > > > > > > not
> > > > > > > > > > see bufrlib in that list.
> > > > > > > > > >
> > > > > > > > > > Can you please tell me - were the libraries and
the
> > > > > > > > > > MET
> > > > > > > > > > code
> > > > > > > > > > built
> > > > > > > > > > with the
> > > > > > > > > > same version of the compiler? I'm checking to see
> > > > > > > > > > if,
> > > > > > > > > > for
> > > > > > > > > > example,
> > > > > > > > > > the
> > > > > > > > > > libraries were built with gcc-6.3.0 but the MET
code
> > > > > > > > > > was
> > > > > > > > > > build
> > > > > > > > > > with
> > > > > > > > > > gcc-4.4.7.
> > > > > > > > > >
> > > > > > > > > > Thanks!
> > > > > > > > > >
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr.
Gregory,
> > > > > > > > > > Contractor,
> > > > > > > > > > Code
> > > > > > > > > > 7501.1
> > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > <URL:
> > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > You can see I am using those libraries for MET
> > > > > > > > > > > 8.1:
> > > > > > > > > > >
> > > > > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > > > > linux-vdso.so.1 => (0x00007ffd449a3000)
> > > > > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > 2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > > > > libpthread.so.0 =>
/lib64/libpthread.so.0
> > > > > > > > > > > (0x00002ab75e63b000)
> > > > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > > > (0x00002ab75e858000)
> > > > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > > > > libpng16.so.16 =>
> > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > > > (0x00002ab75ec60000)
> > > > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > > > (0x00002ab75ee92000)
> > > > > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > > > (0x00002ab75f32f000)
> > > > > > > > > > > libnetcdf.so.11 =>
> > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > > > (0x00002ab75f57c000)
> > > > > > > > > > > libgsl.so.19 =>
> > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > > > > libgslcblas.so.0 =>
> > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > > > > libjpeg.so.9 =>
/software/depot/anaconda-
> > > > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > > > (0x00002ab75ff37000)
> > > > > > > > > > > libstdc++.so.6 =>
> > > > > > > > > > > /software/depot/anaconda-
2.4.0/lib/libstdc++.so.6
> > > > > > > > > > > (0x00002ab760189000)
> > > > > > > > > > > libgcc_s.so.1 =>
/software/depot/anaconda-
> > > > > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > > > > (0x00002ab7602cb000)
> > > > > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > > > > (0x00002ab7602e0000)
> > > > > > > > > > > /lib64/ld-linux-x86-64.so.2
> > > > > > > > > > > (0x0000559353f4f000)
> > > > > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > > > (0x00002ab760675000)
> > > > > > > > > > > libhdf5.so.10 =>
> > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > > > (0x00002ab760894000)
> > > > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > > > (0x00002ab760d6f000)
> > > > > > > > > > > [root at maury2 bin]#
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > regarding
> > > > > > > > > > > MET
> > > > > > > > > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > Prestopnik
> > > > > > > > > > >
> > > > > > > > > > > Thank you, Greg. Can you please tell me - were
the
> > > > > > > > > > > libraries
> > > > > > > > > > > and
> > > > > > > > > > > the
> > > > > > > > > > > MET
> > > > > > > > > > > code built with the same version of the
compiler.
> > > > > > > > > > > I'm
> > > > > > > > > > > checking
> > > > > > > > > > > to
> > > > > > > > > > > see if,
> > > > > > > > > > > for example, the libraries were built with gcc-
> > > > > > > > > > > 6.3.0
> > > > > > > > > > > but
> > > > > > > > > > > the
> > > > > > > > > > > MET
> > > > > > > > > > > code
> > > > > > > > > > > was
> > > > > > > > > > > build with gcc-4.4.7.
> > > > > > > > > > >
> > > > > > > > > > > It sounds like we need the libraries and the MET
> > > > > > > > > > > code
> > > > > > > > > > > to
> > > > > > > > > > > be
> > > > > > > > > > > built
> > > > > > > > > > > with the
> > > > > > > > > > > same version of the compiler, in this case.
> > > > > > > > > > >
> > > > > > > > > > > Thanks for any information you can provide.
> > > > > > > > > > >
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr.
Gregory,
> > > > > > > > > > > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > > 7501.1
> > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > <URL:
> > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > Find the logs attached.
> > > > > > > > > > > >
> > > > > > > > > > > > Greg
> > > > > > > > > > > >
> > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > regarding
> > > > > > > > > > > > MET
> > > > > > > > > > > > 8.1
> > > > > > > > > > > > Julie
> > > > > > > > > > > > Prestopnik
> > > > > > > > > > > >
> > > > > > > > > > > > Could you please run the following:
> > > > > > > > > > > >
> > > > > > > > > > > > which pb2nc
> > > > > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > > > > >
> > > > > > > > > > > > and send me the output?
> > > > > > > > > > > >
> > > > > > > > > > > > Please also send your config.log and make.log
> > > > > > > > > > > > file.
> > > > > > > > > > > >
> > > > > > > > > > > > Thank you!
> > > > > > > > > > > >
> > > > > > > > > > > > Julie
> > > > > > > > > > > >
> > > > > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr.
> > > > > > > > > > > > Gregory,
> > > > > > > > > > > > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > 7501.1
> > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > <URL:
> > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > I used the buildscript. It should build all
of
> > > > > > > > > > > > > the
> > > > > > > > > > > > > external
> > > > > > > > > > > > > libraries,
> > > > > > > > > > > so
> > > > > > > > > > > > > I believe everything was built with the same
> > > > > > > > > > > > > compiler.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Greg
> > > > > > > > > > > > >
> > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > > regarding
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > >
> > > > > > > > > > > > > Hi Greg. Our developer suspects it may be a
> > > > > > > > > > > > > mismatched
> > > > > > > > > > > compiler/library
> > > > > > > > > > > > > version. Was BUFRLIB installed with the
same
> > > > > > > > > > > > > compiler
> > > > > > > > > > > > > as
> > > > > > > > > > > > > MET?
> > > > > > > > > > > > > Also,
> > > > > > > > > > > > what
> > > > > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > > > > >
> > > > > > > > > > > > > Thanks,
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > >
> > > > > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie
> > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > > > > wrote:
> > > > > > > > > > > > >
> > > > > > > > > > > > > > Hi Greg. I am checking in with another
> > > > > > > > > > > > > > developer
> > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > the
> > > > > > > > > > > > > > error
> > > > > > > > > > > > you
> > > > > > > > > > > > > > experienced. Thank you for your patience.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos, Mr.
> > > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> <URL:
> > > > > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-
23)
> > > > > > > > > > > > > >> Copyright (C) 2010 Free Software
Foundation,
> > > > > > > > > > > > > >> Inc.
> > > > > > > > > > > > > >> This is free software; see the source for
> > > > > > > > > > > > > >> copying
> > > > > > > > > > > > > >> conditions.
> > > > > > > > > > > > > >> There
> > > > > > > > > > > > is
> > > > > > > > > > > > > NO
> > > > > > > > > > > > > >> warranty; not even for MERCHANTABILITY or
> > > > > > > > > > > > > >> FITNESS
> > > > > > > > > > > > > >> FOR
> > > > > > > > > > > > > >> A
> > > > > > > > > > > > > >> PARTICULAR
> > > > > > > > > > > > > >> PURPOSE.
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> Not all of the tests passed, please see
> > > > > > > > > > > > > >> attachment.
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> Greg
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > > > >> regarding
> > > > > > > > > > > > > >> MET
> > > > > > > > > > > > > >> 8.1
> > > > > > > > > > > > > >> Julie
> > > > > > > > > > > > > >> Prestopnik
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> Thank you for letting me know. I will
> > > > > > > > > > > > > >> proceed
> > > > > > > > > > > > > >> with
> > > > > > > > > > > > > >> trying
> > > > > > > > > > > > > >> to
> > > > > > > > > > > > reproduce
> > > > > > > > > > > > > >> the
> > > > > > > > > > > > > >> problem using the gcc-6.3.0. I will
follow
> > > > > > > > > > > > > >> up
> > > > > > > > > > > > > >> once
> > > > > > > > > > > > > >> I
> > > > > > > > > > > > > >> have
> > > > > > > > > > > > > >> more
> > > > > > > > > > > > > >> information.
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> Julie
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos, Mr.
> > > > > > > > > > > > > >> Gregory,
> > > > > > > > > > > > > >> Contractor,
> > > > > > > > > > > > > >> Code
> > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > <URL:
> > > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > When I compiled MET 8.0 the last time,
it
> > > > > > > > > > > > > >> > worked.
> > > > > > > > > > > > > >> > I
> > > > > > > > > > > > > >> > was
> > > > > > > > > > > > > >> > also
> > > > > > > > > > > > > >> > able
> > > > > > > > > > > to
> > > > > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > > > > >> > Password:
> > > > > > > > > > > > > >> > Last login: Thu May 9 17:38:30 2019
from
> > > > > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > > > > >> > 16 vcores, boot_memtotal: 257916mb
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > You are accessing a U.S. Government
(USG)
> > > > > > > > > > > > > >> > Information
> > > > > > > > > > > > > >> > System
> > > > > > > > > > > > > >> > (IS)
> > > > > > > > > > > > that
> > > > > > > > > > > > > >> is
> > > > > > > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > > > > > > >> > By using this IS (which includes any
> > > > > > > > > > > > > >> > device
> > > > > > > > > > > > > >> > attached
> > > > > > > > > > > > > >> > to
> > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > >> > IS),
> > > > > > > > > > > > you
> > > > > > > > > > > > > >> > consent to the following conditions:
> > > > > > > > > > > > > >> > -The USG routinely intercepts and
monitors
> > > > > > > > > > > > > >> > communications
> > > > > > > > > > > > > >> > on
> > > > > > > > > > > > > >> > this
> > > > > > > > > > > IS
> > > > > > > > > > > > > for
> > > > > > > > > > > > > >> > purposes including, but not limited to,
> > > > > > > > > > > > > >> > penetration testing, COMSEC monitoring,
> > > > > > > > > > > > > >> > network
> > > > > > > > > > > > > >> > operations
> > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > defense,
> > > > > > > > > > > > > >> > personnel misconduct (PM), law
enforcement
> > > > > > > > > > > > > >> > (LE),
> > > > > > > > > > > > > >> > and counterintelligence (CI)
> > > > > > > > > > > > > >> > investigations.
> > > > > > > > > > > > > >> > -At any time, the USG may inspect and
> > > > > > > > > > > > > >> > seize
> > > > > > > > > > > > > >> > data
> > > > > > > > > > > > > >> > stored
> > > > > > > > > > > > > >> > on
> > > > > > > > > > > > > >> > this
> > > > > > > > > > > IS.
> > > > > > > > > > > > > >> > -Communications using, or data stored
on,
> > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > >> > IS
> > > > > > > > > > > > > >> > are
> > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > >> > private,
> > > > > > > > > > > > are
> > > > > > > > > > > > > >> > subject to routine monitoring,
> > > > > > > > > > > > > >> > interception,
> > > > > > > > > > > > > >> > and search, and may be disclosed or
used
> > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > >> > any
> > > > > > > > > > > > > >> > USG-
> > > > > > > > > > > > > >> > authorized
> > > > > > > > > > > > > purpose.
> > > > > > > > > > > > > >> > -This IS includes security measures
(e.g.,
> > > > > > > > > > > > > >> > authentication
> > > > > > > > > > > > > >> > and
> > > > > > > > > > > access
> > > > > > > > > > > > > >> > controls) to protect USG interests --
not
> > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > > > > >> > -Notwithstanding the above, using this
IS
> > > > > > > > > > > > > >> > does
> > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > >> > constitute
> > > > > > > > > > > > consent
> > > > > > > > > > > > > to
> > > > > > > > > > > > > >> > PM, LE or CI investigative searching or
> > > > > > > > > > > > > >> > monitoring of the content of privileged
> > > > > > > > > > > > > >> > communications,
> > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > >> > work
> > > > > > > > > > > > > product,
> > > > > > > > > > > > > >> > related to personal representation or
> > > > > > > > > > > > > >> > services by attorneys,
psychotherapists,
> > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > >> > clergy,
> > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > >> > their
> > > > > > > > > > > > > >> assistants.
> > > > > > > > > > > > > >> > Such communications and work product
are
> > > > > > > > > > > > > >> > private and confidential. See User
> > > > > > > > > > > > > >> > Agreement
> > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > >> > details.
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > > > >> > regarding
> > > > > > > > > > > > > >> > MET
> > > > > > > > > > > > > >> > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > > > >> > Prestopnik
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > Hi Gregory. I have not tested with
> > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > >> > 6.3.0
> > > > > > > > > > > > > >> > of
> > > > > > > > > > > > > >> > the
> > > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > compiler,
> > > > > > > > > > > > > >> but
> > > > > > > > > > > > > >> > rather only with lower versions
> > > > > > > > > > > > > >> > (specifically
> > > > > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > > > > >> > We
> > > > > > > > > > > > > >> > would,
> > > > > > > > > > > of
> > > > > > > > > > > > > >> course,
> > > > > > > > > > > > > >> > want our code to work with higher
versions
> > > > > > > > > > > > > >> > as
> > > > > > > > > > > > > >> > well.
> > > > > > > > > > > > > >> > I
> > > > > > > > > > > > > >> > have
> > > > > > > > > > > > > >> > not
> > > > > > > > > > > yet
> > > > > > > > > > > > > had
> > > > > > > > > > > > > >> an
> > > > > > > > > > > > > >> > opportunity to test with a higher
version
> > > > > > > > > > > > > >> > like
> > > > > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > > > > >> > Do
> > > > > > > > > > > > > >> > you have
> > > > > > > > > > > > the
> > > > > > > > > > > > > >> > ability to compile MET using a lesser
> > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > >> > of
> > > > > > > > > > > > > >> > the
> > > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > > >> > compiler
> > > > > > > > > > > to
> > > > > > > > > > > > > >> see if
> > > > > > > > > > > > > >> > that clears up the issues you are
> > > > > > > > > > > > > >> > experiencing?
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > Julie
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM Ramos,
Mr.
> > > > > > > > > > > > > >> > Gregory,
> > > > > > > > > > > > > >> > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > <URL:
> > > > > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > Greg
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu #90091]
> > > > > > > > > > > > > >> > > Help
> > > > > > > > > > > > > >> > > regarding
> > > > > > > > > > > > > >> > > MET
> > > > > > > > > > > > > >> > > 8.1
> > > > > > > > > > > > Julie
> > > > > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > Hi Greg. Thank you for passing along
> > > > > > > > > > > > > >> > > your
> > > > > > > > > > > > > >> > > config.log
> > > > > > > > > > > > > >> > > file. I
> > > > > > > > > > > > see a
> > > > > > > > > > > > > >> > couple
> > > > > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > Based on those errors, it looks like
you
> > > > > > > > > > > > > >> > > may
> > > > > > > > > > > > > >> > > not
> > > > > > > > > > > > > >> > > have
> > > > > > > > > > > > > >> > > flex
> > > > > > > > > > > > > >> > > and
> > > > > > > > > > > > bison
> > > > > > > > > > > > > >> > > installed. Please install those and
try
> > > > > > > > > > > > > >> > > running
> > > > > > > > > > > > > >> > > configure
> > > > > > > > > > > again.
> > > > > > > > > > > > > >> Please
> > > > > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > Also, I just wanted to address one
other
> > > > > > > > > > > > > >> > > thing.
> > > > > > > > > > > > > >> > > In
> > > > > > > > > > > > > >> > > your
> > > > > > > > > > > original
> > > > > > > > > > > > > >> email
> > > > > > > > > > > > > >> > you
> > > > > > > > > > > > > >> > > listed the following as part of your
> > > > > > > > > > > > > >> > > "MET
> > > > > > > > > > > > > >> > > Configuration
> > > > > > > > > > > settings":
> > > > > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7
> > > > > > > > > > > > > >> > > -lpthread
> > > > > > > > > > > > > >> > > -ldl
> > > > > > > > > > > > > >> > > -lutil
> > > > > > > > > > > > > >> > > -lm
> > > > > > > > > > > > -Xlinker
> > > > > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > However, in your config.log file it
> > > > > > > > > > > > > >> > > looks
> > > > > > > > > > > > > >> > > like
> > > > > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > > > > >> actually
> > > > > > > > > > > > > >> > > set to be "-
L/software/depot/anaconda-
> > > > > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > > > > -lpthread
> > > > > > > > > > > > > >> > -ldl
> > > > > > > > > > > > > >> > > -lutil -lm -Xlinker -export-dynamic",
> > > > > > > > > > > > > >> > > which
> > > > > > > > > > > > > >> > > is
> > > > > > > > > > > > > >> > > correct
> > > > > > > > > > > > > >> > > because
> > > > > > > > > > > you
> > > > > > > > > > > > > >> need
> > > > > > > > > > > > > >> > to
> > > > > > > > > > > > > >> > > have that -L part in there, so I just
> > > > > > > > > > > > > >> > > want
> > > > > > > > > > > > > >> > > to
> > > > > > > > > > > > > >> > > ensure
> > > > > > > > > > > > > >> > > that
> > > > > > > > > > > > > >> > > will
> > > > > > > > > > > > stay
> > > > > > > > > > > > > >> there
> > > > > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > Thanks,
> > > > > > > > > > > > > >> > > Julie
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM Ramos,
> > > > > > > > > > > > > >> > > Mr.
> > > > > > > > > > > > > >> > > Gregory,
> > > > > > > > > > > > > >> > > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > <URL:
> > > > > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > >
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > Configure.log has no meaningful
info:
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
> > > > > > > > > > > > > >> > > > configure.log
> > > > > > > > > > > > > >> > > > -bash: [ramos at predict: command not
> > > > > > > > > > > > > >> > > > found
> > > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > > > > > > >> > > > To: Ramos, Mr. Gregory, Contractor,
> > > > > > > > > > > > > >> > > > Code
> > > > > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu
#90091]
> > > > > > > > > > > > > >> > > > Help
> > > > > > > > > > > > > >> > > > regarding
> > > > > > > > > > > > > >> > > > MET
> > > > > > > > > > > > > >> > > > 8.1
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > I'll go ahead and assign this
ticket
> > > > > > > > > > > > > >> > > > to
> > > > > > > > > > > > > >> > > > Julie,
> > > > > > > > > > > > > >> > > > and
> > > > > > > > > > > > > >> > > > she
> > > > > > > > > > > > > >> > > > should
> > > > > > > > > > > be
> > > > > > > > > > > > > >> > writing
> > > > > > > > > > > > > >> > > > you back in the next couple of
days.
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > I do know she'll want to see both
the
> > > > > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > > > > >> > > > file you
> > > > > > > > > > > > > >> > generated
> > > > > > > > > > > > > >> > > as
> > > > > > > > > > > > > >> > > > well as the "config.log" file from
> > > > > > > > > > > > > >> > > > that
> > > > > > > > > > > > > >> > > > same
> > > > > > > > > > > > > >> > > > directory.
> > > > > > > > > > > > > >> > > > So
> > > > > > > > > > > > please
> > > > > > > > > > > > > >> send
> > > > > > > > > > > > > >> > > > those along when you get a chance.
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > > > > >> > > > John
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM
Ramos,
> > > > > > > > > > > > > >> > > > Mr.
> > > > > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > > > Code
> > > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019: Request
> > > > > > > > > > > > > >> > > > > 90091
> > > > > > > > > > > > > >> > > > > was
> > > > > > > > > > > > > >> > > > > acted
> > > > > > > > > > > > > >> > > > > upon.
> > > > > > > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > > > > >> > > > > Subject: Help regarding MET 8.1
> > > > > > > > > > > > > >> > > > > Julie
> > > > > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > > > > >> > > > > Requestors:
> > > > > > > > > > > > > >> > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > >> > > > > Julie helped me compiled 8.0
using
> > > > > > > > > > > > > >> > > > > gcc
> > > > > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > > > > >> > > > > and
> > > > > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > > > > 2.4.0.
> > > > > > > > > > > > > >> The
> > > > > > > > > > > > > >> > > user
> > > > > > > > > > > > > >> > > > > asked for 8.1. I took notes last
> > > > > > > > > > > > > >> > > > > time,
> > > > > > > > > > > > > >> > > > > but
> > > > > > > > > > > > > >> > > > > running
> > > > > > > > > > > > > >> > > > > into
> > > > > > > > > > > > > problems:
> > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > > > > MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > > > > >> > > > > export
MET_GSL=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > MET_PYTHON_CC=-
I/software/depot/anaconda-
> > > > > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv
-O3
> > > > > > > > > > > > > >> > > > > -Wall
> > > > > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > > > > >> > > > > export
MET_HDF=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >>
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > > > > MET_HDFEOS=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > > > > MET_NETCDF=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > MET_CAIROLIB=/software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > >> > > > > export MET_PYTHON_LD=-lpython2.7
> > > > > > > > > > > > > >> > > > > -lpthread
> > > > > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > > > > >> > > > > -lm
> > > > > > > > > > > > > >> -Xlinker
> > > > > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > > > > MET_GRIB2C=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > > > > MET_SUBDIR=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > >> > > > > MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > >> > > > > cd /software/depot/met-8.1/met-
8.1
> > > > > > > > > > > > > >> > > > > ./configure
> > > > > > > > > > > > > >> > > > > --prefix=/software/depot/met-
> > > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > >> --enable-grib2
> > > > > > > > > > > > > >> > > > > --enable-modis --enable-
> > > > > > > > > > > > > >> > > > > mode_graphics
> > > > > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > > > > >> > > configure.log
> > > > > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > > > > >> > > > > configure returned with non-zero
> > > > > > > > > > > > > >> > > > > (127)
> > > > > > > > > > > > > >> > > > > status
> > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >> >
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >>
> > > > > > > > > > > > > >>
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > >
> > >
> > >
> >
> >
> >
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Howard Soh
Time: Thu May 23 14:11:44 2019
Known facts:
- GNU 4.x, 5.x, and 6.x compiler work with libgfortran.so.3, but they
are not work with libgfortran.so.4.
- libgfortran.so.4 exists at the PYTHON configuration
(/software/depot/anaconda-2.4.0/lib)
- MET 8.1 was compiled with GNU 4.4.7 but linked with libgfortran.so.4
which does not work with GNU 4.4.7. ==> That's why "make test" failed
with pb2nc.
MET is expecting only libpython2.7.a (and three dependent libraries)
to enable python, but /software/depot/anaconda-2.4.0/lib has more
library files. The extra library files at /software/depot/anaconda-
2.4.0/lib cause the runtime error with pb2nc and other MET tools.
Note: libpython2.7.a requires three more library files (need -ldl
-lutil -lpthread at link time).
The anaconda is collection of python packages and many packages
requires binary (library) files. For example, cfunits package requires
Unidata udunits library. I'm not sure which python package but there
is at least one python package which requires libgfortran.so.4.
Two possible solutions:
Solution 1: Compile MET and third party libraries with GNU 7.x.
It turned out MET 8.1 is not ready for GNU 6.3.0 or higher
Solution 2: Remove libgfortan.so.4 from build/run environment and use
libgfortan.s
If I were you, I would do this way:
1. Copy /software/depot/anaconda-2.4.0 to /software/depot/anaconda-
2.4.0_MET
2. Delete all library files except libpython* at
/software/depot/anaconda-2.4.0_MET/lib
3. Rebuild third party libraries and MET with GCC 4.4.7 with
/software/depot/anaconda-2.4.0_MET instead of
/software/depot/anaconda-2.4.0
4. Run MET with /software/depot/anaconda-2.4.0_MET/lib at
LD_LIBRARY_PATH.
5. If python under MET fails, add missing library to
/software/depot/anaconda-2.4.0_MET/lib except libgfortran.so.4
Cheers,
Howard
On Thu May 23 09:47:54 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> Even gcc 4.4.7 had problems. See attachment.
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 23, 2019 7:23 AM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> No, they are not reliable. ascii2nc did not process the arguments.
It
> worked without argument which displays the usage (or help) message.
> This happens to other executables.
>
> Cheers,
> Howard
>
> On Wed May 22 19:05:44 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > That's fine. If the make test fails, doesn't that mean the
> > executables
> > created aren't reliable?
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Wednesday, May 22, 2019 5:38 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > I'm sorry that MET code is not ready for newer GNU compiler. The
> > error
> > with "make test" was caused by changed APIs from newer gnu
compiler.
> > I
> > fixed it for ascii2nc locally with updating two files. I tried few
> > MET
> > tools and found more than 10 files should be updated.
> >
> > I think it's beyond helpdesk work. It's better to support the
newer
> > version GNU compiler with next release.
> >
> > Cheers,
> > Howard
> >
> >
> > On Wed May 22 12:47:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > Attached is the Makefile, just in case.
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Wednesday, May 22, 2019 11:34 AM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > Would you run the same command manually and sen me the output?
> > >
> > > cd /software/depot/met-8.1a/met-8.1a/scripts
> > > ../src/tools/other/ascii2nc/ascii2nc
> > > ../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc
-v
> > > 2
> > > (NOTE: the same dcommand but one line instead of multiple lines)
> > >
> > > If the command works, would you send me Makefile at the current
> > > directory.
> > > If not working, please run following commands and send me
> > > ascii2nc_test.log.
> > >
> > > ../src/tools/other/ascii2nc/ascii2nc
> > > ../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc
-v
> > > 5
> > > -log ascii2nc_test.log
> > >
> > > ldd ../src/tools/other/ascii2nc/ascii2nc >> ascii2nc_test.log
> > >
> > >
> > > Cheers,
> > > Howard
> > >
> > >
> > > On Wed May 22 11:26:02 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Attached find my make.log and make_test.log
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Wednesday, May 22, 2019 7:11 AM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > > Prestopnik
> > > >
> > > > The runntime NetCDF library is decided by LD_LIBRARY_PATH.
> > > > LD_LIBRARY_PATH can be changed by module loading or by user
> > > > configurations. If the problem happens with NetCDF, would you
ask
> > > > them
> > > > to run this command and check which NetCDF library is loaded?
> > > >
> > > > ldd bin/<MET_tool_name> | grep netcdf
> > > > ldd bin/<MET_tool_name> | grep hdf
> > > >
> > > > for example,
> > > > ldd bin/pb2nc | grep netcdf
> > > > ldd bin/pb2nc | grep hdf
> > > > ldd bin/grid_stat | grep netcdf
> > > > ldd bin/grid_stat | grep hdf
> > > >
> > > > Note: There are dependency between NetCDF4 and HDF5.
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > > On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > OK, we have several people who are using the 8.1 version I
> > > > > built.
> > > > > We
> > > > > use a central location:
> > > > >
> > > > > /software/depot
> > > > >
> > > > > To house all of our software. To be clear, the first build
went
> > > > > OK,
> > > > > it
> > > > > was 'make test' that failed. So the users are using that,
but
> > > > > someone
> > > > > ran into an error today and they asked me about NetCDF. I
think
> > > > > it
> > > > > was
> > > > > their setup. The same build was used on two different
> > > > > machines,
> > > > > one
> > > > > had an error, one didn't.
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Tuesday, May 21, 2019 5:50 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > No, external libraries are not changed.
> > > > >
> > > > > Personally, I'm using newer NetCDF library (4.6.x instead of
> > > > > 4.4.1.1).
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > > On Tue May 21 18:39:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > No, that is not what I am asking. Every time I build, I
use
> > > > > > your
> > > > > > script which builds everything.
> > > > > >
> > > > > > What I am asking is, did the versions of the external
> > > > > > libraries
> > > > > > change?
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Tuesday, May 21, 2019 5:34 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Yes, the third party libraries should be compiled with
newer
> > > > > > version.
> > > > > >
> > > > > > The compile error with gnu 7.3.0 happens with gnu 6.3.0,
too.
> > > > > > The fix/patch is not ready officially. One file has to be
> > > > > > corrected
> > > > > > to support newer version gnu compiler. Would you replace
> > > > > > data_line.cc
> > > > > > with attached file or modify it manually?
> > > > > >
> > > > > > Filename:
> > > > > > met-8.1/src/basic/vx_util/data_line.cc
> > > > > >
> > > > > > line 202:
> > > > > >
> > > > > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > > > > out << prefix << sstream.str() << Line.substr(j) <<
"\"\n";
> > > > > >
> > > > > > line 218:
> > > > > >
> > > > > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > > > > out << prefix << sstream.str() << Line.substr(j) <<
"\"\n";
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > > On Tue May 21 18:21:25 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > Did new external libraries need to be built with 8.1?
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Thursday, May 16, 2019 4:01 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > No new tools but many enhancements.
> > > > > > >
> > > > > > > It's available at
> > > > > > > https://dtcenter.org/community-code/model-evaluation-
tools-
> > > > > > > met/met-
> > > > > > > version-8-1
> > > > > > >
> > > > > > > Cheers,
> > > > > > > Howard
> > > > > > >
> > > > > > > On Thu May 16 16:46:32 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > wrote:
> > > > > > > > Maybe you can answer one question while I try to
> > > > > > > > reinstall
> > > > > > > > everything. What features does 8.1 provide over 8.0?
> > > > > > > >
> > > > > > > > Greg
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Would try this command at /software/depot/met-8.1/met-
> > > > > > > > 8.1/scripts
> > > > > > > > directory?
> > > > > > > >
> > > > > > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > > > > > echo $LD_LIBRARY_PATH
> > > > > > > >
> > > > > > > > 2. Save LD_LIBRARY_PATH
> > > > > > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > > > > > OR
> > > > > > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > > > > > >
> > > > > > > > 3. Set LD_LIBRARY_PATH without
/software/depot/anaconda-
> > > > > > > > 2.4.0/lib
> > > > > > > >
> > > > > > > > 4. Check which libgfortran.so at /software/depot/met-
> > > > > > > > 8.1/met-
> > > > > > > > 8.1/scripts directory.
> > > > > > > >
> > > > > > > > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran
OR
> > > > > > > > ldd
> > > > > > > > ../bin/pb2nc | grep libgfortran
> > > > > > > >
> > > > > > > > 5. Check libgfortran version (should be
libgfortran.so.3,
> > > > > > > > not
> > > > > > > > so.4)
> > > > > > > >
> > > > > > > > 6. Run the failed command manually at
> > > > > > > > /software/depot/met-
> > > > > > > > 8.1/met-
> > > > > > > > 8.1/scripts directory if libgfortran.so.3.
> > > > > > > >
> > > > > > > > ../src/tools/other/pb2nc/pb2nc \
> > > > > > > >
> > > > > > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > > > > > \
> > > > > > > > ../out/pb2nc/sample_pb.nc \
> > > > > > > > config/PB2NCConfig_G212 \
> > > > > > > > -v 2
> > > > > > > >
> > > > > > > > 7. Change back LD_LIBRARY_PATH
> > > > > > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > > > > > OR
> > > > > > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > > > > > >
> > > > > > > > Cheers,
> > > > > > > > Howard
> > > > > > > >
> > > > > > > >
> > > > > > > > On Thu May 16 15:28:16 2019,
> > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > wrote:
> > > > > > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-
with-
> > > > > > > > > grib2-
> > > > > > > > > support
> > > > > > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > > (0x0000003453800000)
> > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
(0x0000003453400000)
> > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > (0x0000003455800000)
> > > > > > > > > libpng16.so.16 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > (0x00007f7f19d0c000)
> > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > (0x00007f7f19af4000)
> > > > > > > > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > > > > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > (0x00007f7f198a6000)
> > > > > > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > (0x00007f7f19567000)
> > > > > > > > > libgsl.so.19 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libgsl.so.19
(0x00007f7f19125000)
> > > > > > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > (0x00007f7f18eeb000)
> > > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > (0x00007f7f18c99000)
> > > > > > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > > > > (0x00007f7f18b58000)
> > > > > > > > > libgcc_s.so.1 =>
> > > > > > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > > > > > (0x00007f7f18b42000)
> > > > > > > > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > > > > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > (0x00007f7f18922000)
> > > > > > > > > libhdf5.so.10 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > (0x00007f7f18447000)
> > > > > > > > > librt.so.1 => /lib64/librt.so.1
(0x0000003454400000)
> > > > > > > > > [ramos at lorenz bin]$
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > MET is expecting "libpython2.7.so" to enable python
> > > > > > > > > support.
> > > > > > > > >
> > > > > > > > > A log message shows the python was not enabled. Is
> > > > > > > > > python
> > > > > > > > > supporting is critical?
> > > > > > > > >
> > > > > > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > > > > > > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > > > > > > > --enable-lidar2nc > configure.log 2>&1
> > > > > > > > >
> > > > > > > > > If not, you can build/run MET 8.1 with gcc/gfortran
> > > > > > > > > 4.4.7.
> > > > > > > > > 1. Make sure python is not enabled
> > > > > > > > > no "--enable-python" option for ./configure
> > > > > > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib"
from
> > > > > > > > > LD_LIBRARY_PATH at the build time and runtime both.
> > > > > > > > >
> > > > > > > > > Cheers,
> > > > > > > > > Howard
> > > > > > > > >
> > > > > > > > > On Thu May 16 14:17:40 2019,
> > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > wrote:
> > > > > > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > > > > > >
> > > > > > > > > > ramos at leo1:~> gcc --version
> > > > > > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright
(C)
> > > > > > > > > > 2017
> > > > > > > > > > Free
> > > > > > > > > > Software Foundation, Inc.
> > > > > > > > > > This is free software; see the source for copying
> > > > > > > > > > conditions.
> > > > > > > > > > There
> > > > > > > > > > is NO
> > > > > > > > > > warranty; not even for MERCHANTABILITY or FITNESS
> > > > > > > > > > FOR
> > > > > > > > > > A
> > > > > > > > > > PARTICULAR PURPOSE.
> > > > > > > > > >
> > > > > > > > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC)
> > > > > > > > > > 7.3.0
> > > > > > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free
Software
> > > > > > > > > > Foundation, Inc.
> > > > > > > > > > This is free software; see the source for copying
> > > > > > > > > > conditions.
> > > > > > > > > > There
> > > > > > > > > > is NO
> > > > > > > > > > warranty; not even for MERCHANTABILITY or FITNESS
FOR
> > > > > > > > > > A
> > > > > > > > > > PARTICULAR PURPOSE.
> > > > > > > > > >
> > > > > > > > > > ramos at leo1:~>
> > > > > > > > > >
> > > > > > > > > > We don't have that version on our Red Hat systems.
> > > > > > > > > > Met
> > > > > > > > > > 8.0
> > > > > > > > > > worked on RH, but 8.1 failed on the 'make test'.
The
> > > > > > > > > > user
> > > > > > > > > > says
> > > > > > > > > > she is fine with the executables so far. I will
have
> > > > > > > > > > to
> > > > > > > > > > build
> > > > > > > > > > a
> > > > > > > > > > gfortran 7.x version.
> > > > > > > > > >
> > > > > > > > > > Greg
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Howard Soh via RT
[mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > Hello,
> > > > > > > > > >
> > > > > > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > > > > > >
> > > > > > > > > > The problem was caused by the path for python
library
> > > > > > > > > > (/software/depot/anaconda-2.4.0/lib).
> > > > > > > > > > libgfortran.so.4
> > > > > > > > > > exists
> > > > > > > > > > there
> > > > > > > > > > from the ldd output. It was used on building MET.
MET
> > > > > > > > > > was
> > > > > > > > > > compiled
> > > > > > > > > > with gcc 4.4.7 which supports only
libgfortran.so.3,
> > > > > > > > > > and
> > > > > > > > > > linked
> > > > > > > > > > with
> > > > > > > > > > libgfortran.so.4 because of MET_PYTHON_LD
> > > > > > > > > > configuration.
> > > > > > > > > > Some
> > > > > > > > > > libraries do not support the backward
compatibility.
> > > > > > > > > > libgfortran.so
> > > > > > > > > > is
> > > > > > > > > > one of them. In this case, the compiler version
and
> > > > > > > > > > library
> > > > > > > > > > version
> > > > > > > > > > should match.
> > > > > > > > > >
> > > > > > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
> > > > > > > > > > 8.1/bin/pb2nc
> > > > > > > > > > |grep
> > > > > > > > > > gfortran
> > > > > > > > > > libgfortran.so.4 =>
/software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > > > > > >
> > > > > > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib\
> > > > > > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\
-Xlinker\
> > > > > > > > > > -export-
> > > > > > > > > > dynamic
> > > > > > > > > >
> > > > > > > > > > The solution is compiling third party libraries
and
> > > > > > > > > > MET
> > > > > > > > > > with
> > > > > > > > > > version
> > > > > > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran
supports
> > > > > > > > > > libgfortran.so.5,
> > > > > > > > > > So the same problem will happen if MET is built
with
> > > > > > > > > > gcc/gfortran
> > > > > > > > > > 6.x
> > > > > > > > > > or gcc/gfortran 8.x.
> > > > > > > > > >
> > > > > > > > > > Cheers,
> > > > > > > > > > Howard
> > > > > > > > > >
> > > > > > > > > > On Mon May 13 18:36:04 2019,
> > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > wrote:
> > > > > > > > > > > Attached is the config.log for NetCDf it shows
> > > > > > > > > > > /usr/bin/gcc
> > > > > > > > > > >
> > > > > > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red
> > > > > > > > > > > Hat
> > > > > > > > > > > version.
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > regarding
> > > > > > > > > > > MET
> > > > > > > > > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > Prestopnik
> > > > > > > > > > >
> > > > > > > > > > > Thank you. Unfortunately, that does not tell me
if
> > > > > > > > > > > the
> > > > > > > > > > > libraries
> > > > > > > > > > > and
> > > > > > > > > > > the
> > > > > > > > > > > MET code were built with the same version of the
> > > > > > > > > > > compiler.
> > > > > > > > > > > I
> > > > > > > > > > > also
> > > > > > > > > > > do
> > > > > > > > > > > not
> > > > > > > > > > > see bufrlib in that list.
> > > > > > > > > > >
> > > > > > > > > > > Can you please tell me - were the libraries and
the
> > > > > > > > > > > MET
> > > > > > > > > > > code
> > > > > > > > > > > built
> > > > > > > > > > > with the
> > > > > > > > > > > same version of the compiler? I'm checking to
see
> > > > > > > > > > > if,
> > > > > > > > > > > for
> > > > > > > > > > > example,
> > > > > > > > > > > the
> > > > > > > > > > > libraries were built with gcc-6.3.0 but the MET
> > > > > > > > > > > code
> > > > > > > > > > > was
> > > > > > > > > > > build
> > > > > > > > > > > with
> > > > > > > > > > > gcc-4.4.7.
> > > > > > > > > > >
> > > > > > > > > > > Thanks!
> > > > > > > > > > >
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr.
Gregory,
> > > > > > > > > > > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > > 7501.1
> > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > <URL:
> > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > You can see I am using those libraries for
MET
> > > > > > > > > > > > 8.1:
> > > > > > > > > > > >
> > > > > > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > > > > > linux-vdso.so.1 =>
(0x00007ffd449a3000)
> > > > > > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > 2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > > > > > libpthread.so.0 =>
/lib64/libpthread.so.0
> > > > > > > > > > > > (0x00002ab75e63b000)
> > > > > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > > > > (0x00002ab75e858000)
> > > > > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > > > > > libpng16.so.16 =>
> > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > > > > (0x00002ab75ec60000)
> > > > > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > > > > (0x00002ab75ee92000)
> > > > > > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > > > > (0x00002ab75f32f000)
> > > > > > > > > > > > libnetcdf.so.11 =>
> > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > > > > (0x00002ab75f57c000)
> > > > > > > > > > > > libgsl.so.19 =>
> > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > > > > > libgslcblas.so.0 =>
> > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > > > > > libjpeg.so.9 =>
/software/depot/anaconda-
> > > > > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > > > > (0x00002ab75ff37000)
> > > > > > > > > > > > libstdc++.so.6 =>
> > > > > > > > > > > > /software/depot/anaconda-
2.4.0/lib/libstdc++.so.6
> > > > > > > > > > > > (0x00002ab760189000)
> > > > > > > > > > > > libgcc_s.so.1 =>
> > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > > > > > (0x00002ab7602cb000)
> > > > > > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > > > > > (0x00002ab7602e0000)
> > > > > > > > > > > > /lib64/ld-linux-x86-64.so.2
> > > > > > > > > > > > (0x0000559353f4f000)
> > > > > > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > > > > (0x00002ab760675000)
> > > > > > > > > > > > libhdf5.so.10 =>
> > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > > > > (0x00002ab760894000)
> > > > > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > > > > (0x00002ab760d6f000)
> > > > > > > > > > > > [root at maury2 bin]#
> > > > > > > > > > > >
> > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > regarding
> > > > > > > > > > > > MET
> > > > > > > > > > > > 8.1
> > > > > > > > > > > > Julie
> > > > > > > > > > > > Prestopnik
> > > > > > > > > > > >
> > > > > > > > > > > > Thank you, Greg. Can you please tell me -
were
> > > > > > > > > > > > the
> > > > > > > > > > > > libraries
> > > > > > > > > > > > and
> > > > > > > > > > > > the
> > > > > > > > > > > > MET
> > > > > > > > > > > > code built with the same version of the
compiler.
> > > > > > > > > > > > I'm
> > > > > > > > > > > > checking
> > > > > > > > > > > > to
> > > > > > > > > > > > see if,
> > > > > > > > > > > > for example, the libraries were built with
gcc-
> > > > > > > > > > > > 6.3.0
> > > > > > > > > > > > but
> > > > > > > > > > > > the
> > > > > > > > > > > > MET
> > > > > > > > > > > > code
> > > > > > > > > > > > was
> > > > > > > > > > > > build with gcc-4.4.7.
> > > > > > > > > > > >
> > > > > > > > > > > > It sounds like we need the libraries and the
MET
> > > > > > > > > > > > code
> > > > > > > > > > > > to
> > > > > > > > > > > > be
> > > > > > > > > > > > built
> > > > > > > > > > > > with the
> > > > > > > > > > > > same version of the compiler, in this case.
> > > > > > > > > > > >
> > > > > > > > > > > > Thanks for any information you can provide.
> > > > > > > > > > > >
> > > > > > > > > > > > Julie
> > > > > > > > > > > >
> > > > > > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr.
> > > > > > > > > > > > Gregory,
> > > > > > > > > > > > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > > 7501.1
> > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > <URL:
> > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > Find the logs attached.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Greg
> > > > > > > > > > > > >
> > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > > regarding
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > >
> > > > > > > > > > > > > Could you please run the following:
> > > > > > > > > > > > >
> > > > > > > > > > > > > which pb2nc
> > > > > > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > > > > > >
> > > > > > > > > > > > > and send me the output?
> > > > > > > > > > > > >
> > > > > > > > > > > > > Please also send your config.log and
make.log
> > > > > > > > > > > > > file.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Thank you!
> > > > > > > > > > > > >
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > >
> > > > > > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr.
> > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > Code
> > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > <URL:
> > > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > I used the buildscript. It should build
all
> > > > > > > > > > > > > > of
> > > > > > > > > > > > > > the
> > > > > > > > > > > > > > external
> > > > > > > > > > > > > > libraries,
> > > > > > > > > > > > so
> > > > > > > > > > > > > > I believe everything was built with the
same
> > > > > > > > > > > > > > compiler.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Greg
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > MET
> > > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Hi Greg. Our developer suspects it may be
a
> > > > > > > > > > > > > > mismatched
> > > > > > > > > > > > compiler/library
> > > > > > > > > > > > > > version. Was BUFRLIB installed with the
> > > > > > > > > > > > > > same
> > > > > > > > > > > > > > compiler
> > > > > > > > > > > > > > as
> > > > > > > > > > > > > > MET?
> > > > > > > > > > > > > > Also,
> > > > > > > > > > > > > what
> > > > > > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Thanks,
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie
> > > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > > > > > wrote:
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Hi Greg. I am checking in with another
> > > > > > > > > > > > > > > developer
> > > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > > the
> > > > > > > > > > > > > > > error
> > > > > > > > > > > > > you
> > > > > > > > > > > > > > > experienced. Thank you for your
patience.
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos,
Mr.
> > > > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> <URL:
> > > > > > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat
4.4.7-
> > > > > > > > > > > > > > >> 23)
> > > > > > > > > > > > > > >> Copyright (C) 2010 Free Software
> > > > > > > > > > > > > > >> Foundation,
> > > > > > > > > > > > > > >> Inc.
> > > > > > > > > > > > > > >> This is free software; see the source
for
> > > > > > > > > > > > > > >> copying
> > > > > > > > > > > > > > >> conditions.
> > > > > > > > > > > > > > >> There
> > > > > > > > > > > > > is
> > > > > > > > > > > > > > NO
> > > > > > > > > > > > > > >> warranty; not even for MERCHANTABILITY
or
> > > > > > > > > > > > > > >> FITNESS
> > > > > > > > > > > > > > >> FOR
> > > > > > > > > > > > > > >> A
> > > > > > > > > > > > > > >> PARTICULAR
> > > > > > > > > > > > > > >> PURPOSE.
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> Not all of the tests passed, please see
> > > > > > > > > > > > > > >> attachment.
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> Greg
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > > > > >> regarding
> > > > > > > > > > > > > > >> MET
> > > > > > > > > > > > > > >> 8.1
> > > > > > > > > > > > > > >> Julie
> > > > > > > > > > > > > > >> Prestopnik
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> Thank you for letting me know. I will
> > > > > > > > > > > > > > >> proceed
> > > > > > > > > > > > > > >> with
> > > > > > > > > > > > > > >> trying
> > > > > > > > > > > > > > >> to
> > > > > > > > > > > > > reproduce
> > > > > > > > > > > > > > >> the
> > > > > > > > > > > > > > >> problem using the gcc-6.3.0. I will
> > > > > > > > > > > > > > >> follow
> > > > > > > > > > > > > > >> up
> > > > > > > > > > > > > > >> once
> > > > > > > > > > > > > > >> I
> > > > > > > > > > > > > > >> have
> > > > > > > > > > > > > > >> more
> > > > > > > > > > > > > > >> information.
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> Julie
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos,
Mr.
> > > > > > > > > > > > > > >> Gregory,
> > > > > > > > > > > > > > >> Contractor,
> > > > > > > > > > > > > > >> Code
> > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > <URL:
> > > > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > When I compiled MET 8.0 the last
time,
> > > > > > > > > > > > > > >> > it
> > > > > > > > > > > > > > >> > worked.
> > > > > > > > > > > > > > >> > I
> > > > > > > > > > > > > > >> > was
> > > > > > > > > > > > > > >> > also
> > > > > > > > > > > > > > >> > able
> > > > > > > > > > > > to
> > > > > > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > > > > > >> > Password:
> > > > > > > > > > > > > > >> > Last login: Thu May 9 17:38:30 2019
> > > > > > > > > > > > > > >> > from
> > > > > > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > > > > > >> > 16 vcores, boot_memtotal:
257916mb
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > You are accessing a U.S. Government
> > > > > > > > > > > > > > >> > (USG)
> > > > > > > > > > > > > > >> > Information
> > > > > > > > > > > > > > >> > System
> > > > > > > > > > > > > > >> > (IS)
> > > > > > > > > > > > > that
> > > > > > > > > > > > > > >> is
> > > > > > > > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > > > > > > > >> > By using this IS (which includes any
> > > > > > > > > > > > > > >> > device
> > > > > > > > > > > > > > >> > attached
> > > > > > > > > > > > > > >> > to
> > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > > >> > IS),
> > > > > > > > > > > > > you
> > > > > > > > > > > > > > >> > consent to the following conditions:
> > > > > > > > > > > > > > >> > -The USG routinely intercepts and
> > > > > > > > > > > > > > >> > monitors
> > > > > > > > > > > > > > >> > communications
> > > > > > > > > > > > > > >> > on
> > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > IS
> > > > > > > > > > > > > > for
> > > > > > > > > > > > > > >> > purposes including, but not limited
to,
> > > > > > > > > > > > > > >> > penetration testing, COMSEC
monitoring,
> > > > > > > > > > > > > > >> > network
> > > > > > > > > > > > > > >> > operations
> > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > > defense,
> > > > > > > > > > > > > > >> > personnel misconduct (PM), law
> > > > > > > > > > > > > > >> > enforcement
> > > > > > > > > > > > > > >> > (LE),
> > > > > > > > > > > > > > >> > and counterintelligence (CI)
> > > > > > > > > > > > > > >> > investigations.
> > > > > > > > > > > > > > >> > -At any time, the USG may inspect and
> > > > > > > > > > > > > > >> > seize
> > > > > > > > > > > > > > >> > data
> > > > > > > > > > > > > > >> > stored
> > > > > > > > > > > > > > >> > on
> > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > IS.
> > > > > > > > > > > > > > >> > -Communications using, or data stored
> > > > > > > > > > > > > > >> > on,
> > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > > >> > IS
> > > > > > > > > > > > > > >> > are
> > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > >> > private,
> > > > > > > > > > > > > are
> > > > > > > > > > > > > > >> > subject to routine monitoring,
> > > > > > > > > > > > > > >> > interception,
> > > > > > > > > > > > > > >> > and search, and may be disclosed or
used
> > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > >> > any
> > > > > > > > > > > > > > >> > USG-
> > > > > > > > > > > > > > >> > authorized
> > > > > > > > > > > > > > purpose.
> > > > > > > > > > > > > > >> > -This IS includes security measures
> > > > > > > > > > > > > > >> > (e.g.,
> > > > > > > > > > > > > > >> > authentication
> > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > access
> > > > > > > > > > > > > > >> > controls) to protect USG interests --
> > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > > > > > >> > -Notwithstanding the above, using
this
> > > > > > > > > > > > > > >> > IS
> > > > > > > > > > > > > > >> > does
> > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > >> > constitute
> > > > > > > > > > > > > consent
> > > > > > > > > > > > > > to
> > > > > > > > > > > > > > >> > PM, LE or CI investigative searching
or
> > > > > > > > > > > > > > >> > monitoring of the content of
privileged
> > > > > > > > > > > > > > >> > communications,
> > > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > > >> > work
> > > > > > > > > > > > > > product,
> > > > > > > > > > > > > > >> > related to personal representation or
> > > > > > > > > > > > > > >> > services by attorneys,
psychotherapists,
> > > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > > >> > clergy,
> > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > > >> > their
> > > > > > > > > > > > > > >> assistants.
> > > > > > > > > > > > > > >> > Such communications and work product
are
> > > > > > > > > > > > > > >> > private and confidential. See User
> > > > > > > > > > > > > > >> > Agreement
> > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > >> > details.
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091]
> > > > > > > > > > > > > > >> > Help
> > > > > > > > > > > > > > >> > regarding
> > > > > > > > > > > > > > >> > MET
> > > > > > > > > > > > > > >> > 8.1
> > > > > > > > > > > > Julie
> > > > > > > > > > > > > > >> > Prestopnik
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > Hi Gregory. I have not tested with
> > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > >> > 6.3.0
> > > > > > > > > > > > > > >> > of
> > > > > > > > > > > > > > >> > the
> > > > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > > compiler,
> > > > > > > > > > > > > > >> but
> > > > > > > > > > > > > > >> > rather only with lower versions
> > > > > > > > > > > > > > >> > (specifically
> > > > > > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > > > > > >> > We
> > > > > > > > > > > > > > >> > would,
> > > > > > > > > > > > of
> > > > > > > > > > > > > > >> course,
> > > > > > > > > > > > > > >> > want our code to work with higher
> > > > > > > > > > > > > > >> > versions
> > > > > > > > > > > > > > >> > as
> > > > > > > > > > > > > > >> > well.
> > > > > > > > > > > > > > >> > I
> > > > > > > > > > > > > > >> > have
> > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > yet
> > > > > > > > > > > > > > had
> > > > > > > > > > > > > > >> an
> > > > > > > > > > > > > > >> > opportunity to test with a higher
> > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > >> > like
> > > > > > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > > > > > >> > Do
> > > > > > > > > > > > > > >> > you have
> > > > > > > > > > > > > the
> > > > > > > > > > > > > > >> > ability to compile MET using a lesser
> > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > >> > of
> > > > > > > > > > > > > > >> > the
> > > > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > > > >> > compiler
> > > > > > > > > > > > to
> > > > > > > > > > > > > > >> see if
> > > > > > > > > > > > > > >> > that clears up the issues you are
> > > > > > > > > > > > > > >> > experiencing?
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > Julie
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM
Ramos,
> > > > > > > > > > > > > > >> > Mr.
> > > > > > > > > > > > > > >> > Gregory,
> > > > > > > > > > > > > > >> > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > <URL:
> > > > > > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > Greg
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor,
> > > > > > > > > > > > > > >> > > Code
> > > > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu
#90091]
> > > > > > > > > > > > > > >> > > Help
> > > > > > > > > > > > > > >> > > regarding
> > > > > > > > > > > > > > >> > > MET
> > > > > > > > > > > > > > >> > > 8.1
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > Hi Greg. Thank you for passing
along
> > > > > > > > > > > > > > >> > > your
> > > > > > > > > > > > > > >> > > config.log
> > > > > > > > > > > > > > >> > > file. I
> > > > > > > > > > > > > see a
> > > > > > > > > > > > > > >> > couple
> > > > > > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > Based on those errors, it looks
like
> > > > > > > > > > > > > > >> > > you
> > > > > > > > > > > > > > >> > > may
> > > > > > > > > > > > > > >> > > not
> > > > > > > > > > > > > > >> > > have
> > > > > > > > > > > > > > >> > > flex
> > > > > > > > > > > > > > >> > > and
> > > > > > > > > > > > > bison
> > > > > > > > > > > > > > >> > > installed. Please install those
and
> > > > > > > > > > > > > > >> > > try
> > > > > > > > > > > > > > >> > > running
> > > > > > > > > > > > > > >> > > configure
> > > > > > > > > > > > again.
> > > > > > > > > > > > > > >> Please
> > > > > > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > Also, I just wanted to address one
> > > > > > > > > > > > > > >> > > other
> > > > > > > > > > > > > > >> > > thing.
> > > > > > > > > > > > > > >> > > In
> > > > > > > > > > > > > > >> > > your
> > > > > > > > > > > > original
> > > > > > > > > > > > > > >> email
> > > > > > > > > > > > > > >> > you
> > > > > > > > > > > > > > >> > > listed the following as part of
your
> > > > > > > > > > > > > > >> > > "MET
> > > > > > > > > > > > > > >> > > Configuration
> > > > > > > > > > > > settings":
> > > > > > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7
> > > > > > > > > > > > > > >> > > -lpthread
> > > > > > > > > > > > > > >> > > -ldl
> > > > > > > > > > > > > > >> > > -lutil
> > > > > > > > > > > > > > >> > > -lm
> > > > > > > > > > > > > -Xlinker
> > > > > > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > However, in your config.log file it
> > > > > > > > > > > > > > >> > > looks
> > > > > > > > > > > > > > >> > > like
> > > > > > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > > > > > >> actually
> > > > > > > > > > > > > > >> > > set to be "-
L/software/depot/anaconda-
> > > > > > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > > > > > -lpthread
> > > > > > > > > > > > > > >> > -ldl
> > > > > > > > > > > > > > >> > > -lutil -lm -Xlinker -export-
dynamic",
> > > > > > > > > > > > > > >> > > which
> > > > > > > > > > > > > > >> > > is
> > > > > > > > > > > > > > >> > > correct
> > > > > > > > > > > > > > >> > > because
> > > > > > > > > > > > you
> > > > > > > > > > > > > > >> need
> > > > > > > > > > > > > > >> > to
> > > > > > > > > > > > > > >> > > have that -L part in there, so I
just
> > > > > > > > > > > > > > >> > > want
> > > > > > > > > > > > > > >> > > to
> > > > > > > > > > > > > > >> > > ensure
> > > > > > > > > > > > > > >> > > that
> > > > > > > > > > > > > > >> > > will
> > > > > > > > > > > > > stay
> > > > > > > > > > > > > > >> there
> > > > > > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > Thanks,
> > > > > > > > > > > > > > >> > > Julie
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM
Ramos,
> > > > > > > > > > > > > > >> > > Mr.
> > > > > > > > > > > > > > >> > > Gregory,
> > > > > > > > > > > > > > >> > > Contractor,
> > > > > > > > > > > > > Code
> > > > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > <URL:
> > > > > > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > >
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > Configure.log has no meaningful
> > > > > > > > > > > > > > >> > > > info:
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
> > > > > > > > > > > > > > >> > > > configure.log
> > > > > > > > > > > > > > >> > > > -bash: [ramos at predict: command
not
> > > > > > > > > > > > > > >> > > > found
> > > > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > > > > > > > >> > > > To: Ramos, Mr. Gregory,
Contractor,
> > > > > > > > > > > > > > >> > > > Code
> > > > > > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu
> > > > > > > > > > > > > > >> > > > #90091]
> > > > > > > > > > > > > > >> > > > Help
> > > > > > > > > > > > > > >> > > > regarding
> > > > > > > > > > > > > > >> > > > MET
> > > > > > > > > > > > > > >> > > > 8.1
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > I'll go ahead and assign this
ticket
> > > > > > > > > > > > > > >> > > > to
> > > > > > > > > > > > > > >> > > > Julie,
> > > > > > > > > > > > > > >> > > > and
> > > > > > > > > > > > > > >> > > > she
> > > > > > > > > > > > > > >> > > > should
> > > > > > > > > > > > be
> > > > > > > > > > > > > > >> > writing
> > > > > > > > > > > > > > >> > > > you back in the next couple of
days.
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > I do know she'll want to see both
> > > > > > > > > > > > > > >> > > > the
> > > > > > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > > > > > >> > > > file you
> > > > > > > > > > > > > > >> > generated
> > > > > > > > > > > > > > >> > > as
> > > > > > > > > > > > > > >> > > > well as the "config.log" file
from
> > > > > > > > > > > > > > >> > > > that
> > > > > > > > > > > > > > >> > > > same
> > > > > > > > > > > > > > >> > > > directory.
> > > > > > > > > > > > > > >> > > > So
> > > > > > > > > > > > > please
> > > > > > > > > > > > > > >> send
> > > > > > > > > > > > > > >> > > > those along when you get a
chance.
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > > > > > >> > > > John
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM
> > > > > > > > > > > > > > >> > > > Ramos,
> > > > > > > > > > > > > > >> > > > Mr.
> > > > > > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019:
Request
> > > > > > > > > > > > > > >> > > > > 90091
> > > > > > > > > > > > > > >> > > > > was
> > > > > > > > > > > > > > >> > > > > acted
> > > > > > > > > > > > > > >> > > > > upon.
> > > > > > > > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > > > > > >> > > > > Subject: Help regarding MET 8.1
> > > > > > > > > > > > > > >> > > > > Julie
> > > > > > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > > > > > >> > > > > Requestors:
> > > > > > > > > > > > > > >> > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > >> > > > > Julie helped me compiled 8.0
using
> > > > > > > > > > > > > > >> > > > > gcc
> > > > > > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > > > > > >> > > > > and
> > > > > > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > > > > > 2.4.0.
> > > > > > > > > > > > > > >> The
> > > > > > > > > > > > > > >> > > user
> > > > > > > > > > > > > > >> > > > > asked for 8.1. I took notes
last
> > > > > > > > > > > > > > >> > > > > time,
> > > > > > > > > > > > > > >> > > > > but
> > > > > > > > > > > > > > >> > > > > running
> > > > > > > > > > > > > > >> > > > > into
> > > > > > > > > > > > > > problems:
> > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > >
MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > > MET_GSL=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > MET_PYTHON_CC=-
> > > > > > > > > > > > > > >> > I/software/depot/anaconda-
> > > > > > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv
-O3
> > > > > > > > > > > > > > >> > > > > -Wall
> > > > > > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > > MET_HDF=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > > MET_HDFEOS=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > > MET_NETCDF=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > MET_CAIROLIB=/software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > >> > > > > export MET_PYTHON_LD=-
lpython2.7
> > > > > > > > > > > > > > >> > > > > -lpthread
> > > > > > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > > > > > >> > > > > -lm
> > > > > > > > > > > > > > >> -Xlinker
> > > > > > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > > MET_GRIB2C=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > > MET_SUBDIR=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > >
MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > >> > > > > cd /software/depot/met-8.1/met-
8.1
> > > > > > > > > > > > > > >> > > > > ./configure
> > > > > > > > > > > > > > >> > > > > --prefix=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > > >> --enable-grib2
> > > > > > > > > > > > > > >> > > > > --enable-modis --enable-
> > > > > > > > > > > > > > >> > > > > mode_graphics
> > > > > > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > > > > > >> > > configure.log
> > > > > > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > > > > > >> > > > > configure returned with non-
zero
> > > > > > > > > > > > > > >> > > > > (127)
> > > > > > > > > > > > > > >> > > > > status
> > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > >
> > > >
> > > >
> > >
> > >
> > >
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Thu May 23 17:26:50 2019
This is the statement I don't understand:
Solution 1: Compile MET and third party libraries with GNU 7.x.
It turned out MET 8.1 is not ready for GNU 6.3.0 or higher
You say it doesn't work for 6.3.0 and higher, but suggest 7.x. I don't
know what you are says. I tried MET 8.1 with 7.x and every time I
compile I rebuilt the external libraries.
Greg
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Thursday, May 23, 2019 1:12 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
Known facts:
- GNU 4.x, 5.x, and 6.x compiler work with libgfortran.so.3, but they
are not work with libgfortran.so.4.
- libgfortran.so.4 exists at the PYTHON configuration
(/software/depot/anaconda-2.4.0/lib)
- MET 8.1 was compiled with GNU 4.4.7 but linked with libgfortran.so.4
which does not work with GNU 4.4.7. ==> That's why "make test" failed
with pb2nc.
MET is expecting only libpython2.7.a (and three dependent libraries)
to enable python, but /software/depot/anaconda-2.4.0/lib has more
library files. The extra library files at /software/depot/anaconda-
2.4.0/lib cause the runtime error with pb2nc and other MET tools.
Note: libpython2.7.a requires three more library files (need -ldl
-lutil -lpthread at link time).
The anaconda is collection of python packages and many packages
requires binary (library) files. For example, cfunits package requires
Unidata udunits library. I'm not sure which python package but there
is at least one python package which requires libgfortran.so.4.
Two possible solutions:
Solution 1: Compile MET and third party libraries with GNU 7.x.
It turned out MET 8.1 is not ready for GNU 6.3.0 or higher
Solution 2: Remove libgfortan.so.4 from build/run environment and use
libgfortan.s
If I were you, I would do this way:
1. Copy /software/depot/anaconda-2.4.0 to /software/depot/anaconda-
2.4.0_MET
2. Delete all library files except libpython* at
/software/depot/anaconda-2.4.0_MET/lib
3. Rebuild third party libraries and MET with GCC 4.4.7 with
/software/depot/anaconda-2.4.0_MET instead of
/software/depot/anaconda-2.4.0
4. Run MET with /software/depot/anaconda-2.4.0_MET/lib at
LD_LIBRARY_PATH.
5. If python under MET fails, add missing library to
/software/depot/anaconda-2.4.0_MET/lib except libgfortran.so.4
Cheers,
Howard
On Thu May 23 09:47:54 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> Even gcc 4.4.7 had problems. See attachment.
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 23, 2019 7:23 AM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> No, they are not reliable. ascii2nc did not process the arguments.
It
> worked without argument which displays the usage (or help) message.
> This happens to other executables.
>
> Cheers,
> Howard
>
> On Wed May 22 19:05:44 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > That's fine. If the make test fails, doesn't that mean the
> > executables
> > created aren't reliable?
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Wednesday, May 22, 2019 5:38 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > I'm sorry that MET code is not ready for newer GNU compiler. The
> > error
> > with "make test" was caused by changed APIs from newer gnu
compiler.
> > I
> > fixed it for ascii2nc locally with updating two files. I tried few
> > MET
> > tools and found more than 10 files should be updated.
> >
> > I think it's beyond helpdesk work. It's better to support the
newer
> > version GNU compiler with next release.
> >
> > Cheers,
> > Howard
> >
> >
> > On Wed May 22 12:47:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > Attached is the Makefile, just in case.
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Wednesday, May 22, 2019 11:34 AM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > Would you run the same command manually and sen me the output?
> > >
> > > cd /software/depot/met-8.1a/met-8.1a/scripts
> > > ../src/tools/other/ascii2nc/ascii2nc
> > > ../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc
-v
> > > 2
> > > (NOTE: the same dcommand but one line instead of multiple lines)
> > >
> > > If the command works, would you send me Makefile at the current
> > > directory.
> > > If not working, please run following commands and send me
> > > ascii2nc_test.log.
> > >
> > > ../src/tools/other/ascii2nc/ascii2nc
> > > ../data/sample_obs/ascii/sample_ascii_obs.txt ./sample_ascii.nc
-v
> > > 5
> > > -log ascii2nc_test.log
> > >
> > > ldd ../src/tools/other/ascii2nc/ascii2nc >> ascii2nc_test.log
> > >
> > >
> > > Cheers,
> > > Howard
> > >
> > >
> > > On Wed May 22 11:26:02 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Attached find my make.log and make_test.log
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Wednesday, May 22, 2019 7:11 AM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > > Prestopnik
> > > >
> > > > The runntime NetCDF library is decided by LD_LIBRARY_PATH.
> > > > LD_LIBRARY_PATH can be changed by module loading or by user
> > > > configurations. If the problem happens with NetCDF, would you
ask
> > > > them
> > > > to run this command and check which NetCDF library is loaded?
> > > >
> > > > ldd bin/<MET_tool_name> | grep netcdf
> > > > ldd bin/<MET_tool_name> | grep hdf
> > > >
> > > > for example,
> > > > ldd bin/pb2nc | grep netcdf
> > > > ldd bin/pb2nc | grep hdf
> > > > ldd bin/grid_stat | grep netcdf
> > > > ldd bin/grid_stat | grep hdf
> > > >
> > > > Note: There are dependency between NetCDF4 and HDF5.
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > > On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > OK, we have several people who are using the 8.1 version I
> > > > > built.
> > > > > We
> > > > > use a central location:
> > > > >
> > > > > /software/depot
> > > > >
> > > > > To house all of our software. To be clear, the first build
went
> > > > > OK,
> > > > > it
> > > > > was 'make test' that failed. So the users are using that,
but
> > > > > someone
> > > > > ran into an error today and they asked me about NetCDF. I
think
> > > > > it
> > > > > was
> > > > > their setup. The same build was used on two different
> > > > > machines,
> > > > > one
> > > > > had an error, one didn't.
> > > > >
> > > > > Greg
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Tuesday, May 21, 2019 5:50 PM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > No, external libraries are not changed.
> > > > >
> > > > > Personally, I'm using newer NetCDF library (4.6.x instead of
> > > > > 4.4.1.1).
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > > On Tue May 21 18:39:25 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > No, that is not what I am asking. Every time I build, I
use
> > > > > > your
> > > > > > script which builds everything.
> > > > > >
> > > > > > What I am asking is, did the versions of the external
> > > > > > libraries
> > > > > > change?
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Tuesday, May 21, 2019 5:34 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > Yes, the third party libraries should be compiled with
newer
> > > > > > version.
> > > > > >
> > > > > > The compile error with gnu 7.3.0 happens with gnu 6.3.0,
too.
> > > > > > The fix/patch is not ready officially. One file has to be
> > > > > > corrected
> > > > > > to support newer version gnu compiler. Would you replace
> > > > > > data_line.cc
> > > > > > with attached file or modify it manually?
> > > > > >
> > > > > > Filename:
> > > > > > met-8.1/src/basic/vx_util/data_line.cc
> > > > > >
> > > > > > line 202:
> > > > > >
> > > > > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > > > > out << prefix << sstream.str() << Line.substr(j) <<
"\"\n";
> > > > > >
> > > > > > line 218:
> > > > > >
> > > > > > out << prefix << sstream << Line.substr(j) << "\"\n"; ==>
> > > > > > out << prefix << sstream.str() << Line.substr(j) <<
"\"\n";
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > > On Tue May 21 18:21:25 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > Did new external libraries need to be built with 8.1?
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Thursday, May 16, 2019 4:01 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > No new tools but many enhancements.
> > > > > > >
> > > > > > > It's available at
> > > > > > > https://dtcenter.org/community-code/model-evaluation-
tools-
> > > > > > > met/met-
> > > > > > > version-8-1
> > > > > > >
> > > > > > > Cheers,
> > > > > > > Howard
> > > > > > >
> > > > > > > On Thu May 16 16:46:32 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > wrote:
> > > > > > > > Maybe you can answer one question while I try to
> > > > > > > > reinstall
> > > > > > > > everything. What features does 8.1 provide over 8.0?
> > > > > > > >
> > > > > > > > Greg
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Would try this command at /software/depot/met-8.1/met-
> > > > > > > > 8.1/scripts
> > > > > > > > directory?
> > > > > > > >
> > > > > > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > > > > > echo $LD_LIBRARY_PATH
> > > > > > > >
> > > > > > > > 2. Save LD_LIBRARY_PATH
> > > > > > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > > > > > OR
> > > > > > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > > > > > >
> > > > > > > > 3. Set LD_LIBRARY_PATH without
/software/depot/anaconda-
> > > > > > > > 2.4.0/lib
> > > > > > > >
> > > > > > > > 4. Check which libgfortran.so at /software/depot/met-
> > > > > > > > 8.1/met-
> > > > > > > > 8.1/scripts directory.
> > > > > > > >
> > > > > > > > ldd ../src/tools/other/pb2nc/pb2nc | grep libgfortran
OR
> > > > > > > > ldd
> > > > > > > > ../bin/pb2nc | grep libgfortran
> > > > > > > >
> > > > > > > > 5. Check libgfortran version (should be
libgfortran.so.3,
> > > > > > > > not
> > > > > > > > so.4)
> > > > > > > >
> > > > > > > > 6. Run the failed command manually at
> > > > > > > > /software/depot/met-
> > > > > > > > 8.1/met-
> > > > > > > > 8.1/scripts directory if libgfortran.so.3.
> > > > > > > >
> > > > > > > > ../src/tools/other/pb2nc/pb2nc \
> > > > > > > >
> > > > > > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > > > > > \
> > > > > > > > ../out/pb2nc/sample_pb.nc \
> > > > > > > > config/PB2NCConfig_G212 \
> > > > > > > > -v 2
> > > > > > > >
> > > > > > > > 7. Change back LD_LIBRARY_PATH
> > > > > > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > > > > > OR
> > > > > > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > > > > > >
> > > > > > > > Cheers,
> > > > > > > > Howard
> > > > > > > >
> > > > > > > >
> > > > > > > > On Thu May 16 15:28:16 2019,
> > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > wrote:
> > > > > > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-
with-
> > > > > > > > > grib2-
> > > > > > > > > support
> > > > > > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > > (0x0000003453800000)
> > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
(0x0000003453400000)
> > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > (0x0000003455800000)
> > > > > > > > > libpng16.so.16 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > (0x00007f7f19d0c000)
> > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > (0x00007f7f19af4000)
> > > > > > > > > libm.so.6 => /lib64/libm.so.6 (0x0000003453c00000)
> > > > > > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > (0x00007f7f198a6000)
> > > > > > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > (0x00007f7f19567000)
> > > > > > > > > libgsl.so.19 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libgsl.so.19
(0x00007f7f19125000)
> > > > > > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > (0x00007f7f18eeb000)
> > > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > (0x00007f7f18c99000)
> > > > > > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > > > > (0x00007f7f18b58000)
> > > > > > > > > libgcc_s.so.1 =>
> > > > > > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > > > > > (0x00007f7f18b42000)
> > > > > > > > > libc.so.6 => /lib64/libc.so.6 (0x0000003453000000)
> > > > > > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > (0x00007f7f18922000)
> > > > > > > > > libhdf5.so.10 => /software/depot/met-
> > > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > (0x00007f7f18447000)
> > > > > > > > > librt.so.1 => /lib64/librt.so.1
(0x0000003454400000)
> > > > > > > > > [ramos at lorenz bin]$
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > MET is expecting "libpython2.7.so" to enable python
> > > > > > > > > support.
> > > > > > > > >
> > > > > > > > > A log message shows the python was not enabled. Is
> > > > > > > > > python
> > > > > > > > > supporting is critical?
> > > > > > > > >
> > > > > > > > > ./configure --prefix=/software/depot/met-8.1/met-8.1
> > > > > > > > > --enable-grib2 --enable-modis --enable-mode_graphics
> > > > > > > > > --enable-lidar2nc > configure.log 2>&1
> > > > > > > > >
> > > > > > > > > If not, you can build/run MET 8.1 with gcc/gfortran
> > > > > > > > > 4.4.7.
> > > > > > > > > 1. Make sure python is not enabled
> > > > > > > > > no "--enable-python" option for ./configure
> > > > > > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib"
from
> > > > > > > > > LD_LIBRARY_PATH at the build time and runtime both.
> > > > > > > > >
> > > > > > > > > Cheers,
> > > > > > > > > Howard
> > > > > > > > >
> > > > > > > > > On Thu May 16 14:17:40 2019,
> > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > wrote:
> > > > > > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > > > > > >
> > > > > > > > > > ramos at leo1:~> gcc --version
> > > > > > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright
(C)
> > > > > > > > > > 2017
> > > > > > > > > > Free
> > > > > > > > > > Software Foundation, Inc.
> > > > > > > > > > This is free software; see the source for copying
> > > > > > > > > > conditions.
> > > > > > > > > > There
> > > > > > > > > > is NO
> > > > > > > > > > warranty; not even for MERCHANTABILITY or FITNESS
> > > > > > > > > > FOR
> > > > > > > > > > A
> > > > > > > > > > PARTICULAR PURPOSE.
> > > > > > > > > >
> > > > > > > > > > ramos at leo1:~> gfortran --version GNU Fortran (GCC)
> > > > > > > > > > 7.3.0
> > > > > > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free
Software
> > > > > > > > > > Foundation, Inc.
> > > > > > > > > > This is free software; see the source for copying
> > > > > > > > > > conditions.
> > > > > > > > > > There
> > > > > > > > > > is NO
> > > > > > > > > > warranty; not even for MERCHANTABILITY or FITNESS
FOR
> > > > > > > > > > A
> > > > > > > > > > PARTICULAR PURPOSE.
> > > > > > > > > >
> > > > > > > > > > ramos at leo1:~>
> > > > > > > > > >
> > > > > > > > > > We don't have that version on our Red Hat systems.
> > > > > > > > > > Met
> > > > > > > > > > 8.0
> > > > > > > > > > worked on RH, but 8.1 failed on the 'make test'.
The
> > > > > > > > > > user
> > > > > > > > > > says
> > > > > > > > > > she is fine with the executables so far. I will
have
> > > > > > > > > > to
> > > > > > > > > > build
> > > > > > > > > > a
> > > > > > > > > > gfortran 7.x version.
> > > > > > > > > >
> > > > > > > > > > Greg
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Howard Soh via RT
[mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > Hello,
> > > > > > > > > >
> > > > > > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > > > > > >
> > > > > > > > > > The problem was caused by the path for python
library
> > > > > > > > > > (/software/depot/anaconda-2.4.0/lib).
> > > > > > > > > > libgfortran.so.4
> > > > > > > > > > exists
> > > > > > > > > > there
> > > > > > > > > > from the ldd output. It was used on building MET.
MET
> > > > > > > > > > was
> > > > > > > > > > compiled
> > > > > > > > > > with gcc 4.4.7 which supports only
libgfortran.so.3,
> > > > > > > > > > and
> > > > > > > > > > linked
> > > > > > > > > > with
> > > > > > > > > > libgfortran.so.4 because of MET_PYTHON_LD
> > > > > > > > > > configuration.
> > > > > > > > > > Some
> > > > > > > > > > libraries do not support the backward
compatibility.
> > > > > > > > > > libgfortran.so
> > > > > > > > > > is
> > > > > > > > > > one of them. In this case, the compiler version
and
> > > > > > > > > > library
> > > > > > > > > > version
> > > > > > > > > > should match.
> > > > > > > > > >
> > > > > > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-8.1/met-
> > > > > > > > > > 8.1/bin/pb2nc
> > > > > > > > > > |grep
> > > > > > > > > > gfortran
> > > > > > > > > > libgfortran.so.4 =>
/software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > > > > > >
> > > > > > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib\
> > > > > > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\
-Xlinker\
> > > > > > > > > > -export-
> > > > > > > > > > dynamic
> > > > > > > > > >
> > > > > > > > > > The solution is compiling third party libraries
and
> > > > > > > > > > MET
> > > > > > > > > > with
> > > > > > > > > > version
> > > > > > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran
supports
> > > > > > > > > > libgfortran.so.5,
> > > > > > > > > > So the same problem will happen if MET is built
with
> > > > > > > > > > gcc/gfortran
> > > > > > > > > > 6.x
> > > > > > > > > > or gcc/gfortran 8.x.
> > > > > > > > > >
> > > > > > > > > > Cheers,
> > > > > > > > > > Howard
> > > > > > > > > >
> > > > > > > > > > On Mon May 13 18:36:04 2019,
> > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > wrote:
> > > > > > > > > > > Attached is the config.log for NetCDf it shows
> > > > > > > > > > > /usr/bin/gcc
> > > > > > > > > > >
> > > > > > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in Red
> > > > > > > > > > > Hat
> > > > > > > > > > > version.
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > regarding
> > > > > > > > > > > MET
> > > > > > > > > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > Prestopnik
> > > > > > > > > > >
> > > > > > > > > > > Thank you. Unfortunately, that does not tell me
if
> > > > > > > > > > > the
> > > > > > > > > > > libraries
> > > > > > > > > > > and
> > > > > > > > > > > the
> > > > > > > > > > > MET code were built with the same version of the
> > > > > > > > > > > compiler.
> > > > > > > > > > > I
> > > > > > > > > > > also
> > > > > > > > > > > do
> > > > > > > > > > > not
> > > > > > > > > > > see bufrlib in that list.
> > > > > > > > > > >
> > > > > > > > > > > Can you please tell me - were the libraries and
the
> > > > > > > > > > > MET
> > > > > > > > > > > code
> > > > > > > > > > > built
> > > > > > > > > > > with the
> > > > > > > > > > > same version of the compiler? I'm checking to
see
> > > > > > > > > > > if,
> > > > > > > > > > > for
> > > > > > > > > > > example,
> > > > > > > > > > > the
> > > > > > > > > > > libraries were built with gcc-6.3.0 but the MET
> > > > > > > > > > > code
> > > > > > > > > > > was
> > > > > > > > > > > build
> > > > > > > > > > > with
> > > > > > > > > > > gcc-4.4.7.
> > > > > > > > > > >
> > > > > > > > > > > Thanks!
> > > > > > > > > > >
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr.
Gregory,
> > > > > > > > > > > Contractor,
> > > > > > > > > > > Code
> > > > > > > > > > > 7501.1
> > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > <URL:
> > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > You can see I am using those libraries for
MET
> > > > > > > > > > > > 8.1:
> > > > > > > > > > > >
> > > > > > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > > > > > linux-vdso.so.1 =>
(0x00007ffd449a3000)
> > > > > > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > 2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > > > > > libpthread.so.0 =>
/lib64/libpthread.so.0
> > > > > > > > > > > > (0x00002ab75e63b000)
> > > > > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > > > > (0x00002ab75e858000)
> > > > > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > > > > > libpng16.so.16 =>
> > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > > > > (0x00002ab75ec60000)
> > > > > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > > > > (0x00002ab75ee92000)
> > > > > > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > > > > (0x00002ab75f32f000)
> > > > > > > > > > > > libnetcdf.so.11 =>
> > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > > > > (0x00002ab75f57c000)
> > > > > > > > > > > > libgsl.so.19 =>
> > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > > > > > libgslcblas.so.0 =>
> > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > > > > > libjpeg.so.9 =>
/software/depot/anaconda-
> > > > > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > > > > (0x00002ab75ff37000)
> > > > > > > > > > > > libstdc++.so.6 =>
> > > > > > > > > > > > /software/depot/anaconda-
2.4.0/lib/libstdc++.so.6
> > > > > > > > > > > > (0x00002ab760189000)
> > > > > > > > > > > > libgcc_s.so.1 =>
> > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > > > > > (0x00002ab7602cb000)
> > > > > > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > > > > > (0x00002ab7602e0000)
> > > > > > > > > > > > /lib64/ld-linux-x86-64.so.2
> > > > > > > > > > > > (0x0000559353f4f000)
> > > > > > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > > > > (0x00002ab760675000)
> > > > > > > > > > > > libhdf5.so.10 =>
> > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > > > > (0x00002ab760894000)
> > > > > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > > > > (0x00002ab760d6f000)
> > > > > > > > > > > > [root at maury2 bin]#
> > > > > > > > > > > >
> > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > regarding
> > > > > > > > > > > > MET
> > > > > > > > > > > > 8.1
> > > > > > > > > > > > Julie
> > > > > > > > > > > > Prestopnik
> > > > > > > > > > > >
> > > > > > > > > > > > Thank you, Greg. Can you please tell me -
were
> > > > > > > > > > > > the
> > > > > > > > > > > > libraries
> > > > > > > > > > > > and
> > > > > > > > > > > > the
> > > > > > > > > > > > MET
> > > > > > > > > > > > code built with the same version of the
compiler.
> > > > > > > > > > > > I'm
> > > > > > > > > > > > checking
> > > > > > > > > > > > to
> > > > > > > > > > > > see if,
> > > > > > > > > > > > for example, the libraries were built with
gcc-
> > > > > > > > > > > > 6.3.0
> > > > > > > > > > > > but
> > > > > > > > > > > > the
> > > > > > > > > > > > MET
> > > > > > > > > > > > code
> > > > > > > > > > > > was
> > > > > > > > > > > > build with gcc-4.4.7.
> > > > > > > > > > > >
> > > > > > > > > > > > It sounds like we need the libraries and the
MET
> > > > > > > > > > > > code
> > > > > > > > > > > > to
> > > > > > > > > > > > be
> > > > > > > > > > > > built
> > > > > > > > > > > > with the
> > > > > > > > > > > > same version of the compiler, in this case.
> > > > > > > > > > > >
> > > > > > > > > > > > Thanks for any information you can provide.
> > > > > > > > > > > >
> > > > > > > > > > > > Julie
> > > > > > > > > > > >
> > > > > > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr.
> > > > > > > > > > > > Gregory,
> > > > > > > > > > > > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > > 7501.1
> > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > <URL:
> > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > Find the logs attached.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Greg
> > > > > > > > > > > > >
> > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > > regarding
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > >
> > > > > > > > > > > > > Could you please run the following:
> > > > > > > > > > > > >
> > > > > > > > > > > > > which pb2nc
> > > > > > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > > > > > >
> > > > > > > > > > > > > and send me the output?
> > > > > > > > > > > > >
> > > > > > > > > > > > > Please also send your config.log and
make.log
> > > > > > > > > > > > > file.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Thank you!
> > > > > > > > > > > > >
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > >
> > > > > > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr.
> > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > Code
> > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > <URL:
> > > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > I used the buildscript. It should build
all
> > > > > > > > > > > > > > of
> > > > > > > > > > > > > > the
> > > > > > > > > > > > > > external
> > > > > > > > > > > > > > libraries,
> > > > > > > > > > > > so
> > > > > > > > > > > > > > I believe everything was built with the
same
> > > > > > > > > > > > > > compiler.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Greg
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > MET
> > > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Hi Greg. Our developer suspects it may be
a
> > > > > > > > > > > > > > mismatched
> > > > > > > > > > > > compiler/library
> > > > > > > > > > > > > > version. Was BUFRLIB installed with the
> > > > > > > > > > > > > > same
> > > > > > > > > > > > > > compiler
> > > > > > > > > > > > > > as
> > > > > > > > > > > > > > MET?
> > > > > > > > > > > > > > Also,
> > > > > > > > > > > > > what
> > > > > > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Thanks,
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie
> > > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > > > > > wrote:
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Hi Greg. I am checking in with another
> > > > > > > > > > > > > > > developer
> > > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > > the
> > > > > > > > > > > > > > > error
> > > > > > > > > > > > > you
> > > > > > > > > > > > > > > experienced. Thank you for your
patience.
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos,
Mr.
> > > > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> <URL:
> > > > > > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat
4.4.7-
> > > > > > > > > > > > > > >> 23)
> > > > > > > > > > > > > > >> Copyright (C) 2010 Free Software
> > > > > > > > > > > > > > >> Foundation,
> > > > > > > > > > > > > > >> Inc.
> > > > > > > > > > > > > > >> This is free software; see the source
for
> > > > > > > > > > > > > > >> copying
> > > > > > > > > > > > > > >> conditions.
> > > > > > > > > > > > > > >> There
> > > > > > > > > > > > > is
> > > > > > > > > > > > > > NO
> > > > > > > > > > > > > > >> warranty; not even for MERCHANTABILITY
or
> > > > > > > > > > > > > > >> FITNESS
> > > > > > > > > > > > > > >> FOR
> > > > > > > > > > > > > > >> A
> > > > > > > > > > > > > > >> PARTICULAR
> > > > > > > > > > > > > > >> PURPOSE.
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> Not all of the tests passed, please see
> > > > > > > > > > > > > > >> attachment.
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> Greg
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > > > > >> regarding
> > > > > > > > > > > > > > >> MET
> > > > > > > > > > > > > > >> 8.1
> > > > > > > > > > > > > > >> Julie
> > > > > > > > > > > > > > >> Prestopnik
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> Thank you for letting me know. I will
> > > > > > > > > > > > > > >> proceed
> > > > > > > > > > > > > > >> with
> > > > > > > > > > > > > > >> trying
> > > > > > > > > > > > > > >> to
> > > > > > > > > > > > > reproduce
> > > > > > > > > > > > > > >> the
> > > > > > > > > > > > > > >> problem using the gcc-6.3.0. I will
> > > > > > > > > > > > > > >> follow
> > > > > > > > > > > > > > >> up
> > > > > > > > > > > > > > >> once
> > > > > > > > > > > > > > >> I
> > > > > > > > > > > > > > >> have
> > > > > > > > > > > > > > >> more
> > > > > > > > > > > > > > >> information.
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> Julie
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos,
Mr.
> > > > > > > > > > > > > > >> Gregory,
> > > > > > > > > > > > > > >> Contractor,
> > > > > > > > > > > > > > >> Code
> > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > <URL:
> > > > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > When I compiled MET 8.0 the last
time,
> > > > > > > > > > > > > > >> > it
> > > > > > > > > > > > > > >> > worked.
> > > > > > > > > > > > > > >> > I
> > > > > > > > > > > > > > >> > was
> > > > > > > > > > > > > > >> > also
> > > > > > > > > > > > > > >> > able
> > > > > > > > > > > > to
> > > > > > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > > > > > >> > Password:
> > > > > > > > > > > > > > >> > Last login: Thu May 9 17:38:30 2019
> > > > > > > > > > > > > > >> > from
> > > > > > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > *** Welcome to Cray eLogin Server ***
> > > > > > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > > > > > >> > 16 vcores, boot_memtotal:
257916mb
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > You are accessing a U.S. Government
> > > > > > > > > > > > > > >> > (USG)
> > > > > > > > > > > > > > >> > Information
> > > > > > > > > > > > > > >> > System
> > > > > > > > > > > > > > >> > (IS)
> > > > > > > > > > > > > that
> > > > > > > > > > > > > > >> is
> > > > > > > > > > > > > > >> > provided for USG-authorized use only.
> > > > > > > > > > > > > > >> > By using this IS (which includes any
> > > > > > > > > > > > > > >> > device
> > > > > > > > > > > > > > >> > attached
> > > > > > > > > > > > > > >> > to
> > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > > >> > IS),
> > > > > > > > > > > > > you
> > > > > > > > > > > > > > >> > consent to the following conditions:
> > > > > > > > > > > > > > >> > -The USG routinely intercepts and
> > > > > > > > > > > > > > >> > monitors
> > > > > > > > > > > > > > >> > communications
> > > > > > > > > > > > > > >> > on
> > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > IS
> > > > > > > > > > > > > > for
> > > > > > > > > > > > > > >> > purposes including, but not limited
to,
> > > > > > > > > > > > > > >> > penetration testing, COMSEC
monitoring,
> > > > > > > > > > > > > > >> > network
> > > > > > > > > > > > > > >> > operations
> > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > > defense,
> > > > > > > > > > > > > > >> > personnel misconduct (PM), law
> > > > > > > > > > > > > > >> > enforcement
> > > > > > > > > > > > > > >> > (LE),
> > > > > > > > > > > > > > >> > and counterintelligence (CI)
> > > > > > > > > > > > > > >> > investigations.
> > > > > > > > > > > > > > >> > -At any time, the USG may inspect and
> > > > > > > > > > > > > > >> > seize
> > > > > > > > > > > > > > >> > data
> > > > > > > > > > > > > > >> > stored
> > > > > > > > > > > > > > >> > on
> > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > IS.
> > > > > > > > > > > > > > >> > -Communications using, or data stored
> > > > > > > > > > > > > > >> > on,
> > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > > >> > IS
> > > > > > > > > > > > > > >> > are
> > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > >> > private,
> > > > > > > > > > > > > are
> > > > > > > > > > > > > > >> > subject to routine monitoring,
> > > > > > > > > > > > > > >> > interception,
> > > > > > > > > > > > > > >> > and search, and may be disclosed or
used
> > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > >> > any
> > > > > > > > > > > > > > >> > USG-
> > > > > > > > > > > > > > >> > authorized
> > > > > > > > > > > > > > purpose.
> > > > > > > > > > > > > > >> > -This IS includes security measures
> > > > > > > > > > > > > > >> > (e.g.,
> > > > > > > > > > > > > > >> > authentication
> > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > access
> > > > > > > > > > > > > > >> > controls) to protect USG interests --
> > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > > > > > >> > -Notwithstanding the above, using
this
> > > > > > > > > > > > > > >> > IS
> > > > > > > > > > > > > > >> > does
> > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > >> > constitute
> > > > > > > > > > > > > consent
> > > > > > > > > > > > > > to
> > > > > > > > > > > > > > >> > PM, LE or CI investigative searching
or
> > > > > > > > > > > > > > >> > monitoring of the content of
privileged
> > > > > > > > > > > > > > >> > communications,
> > > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > > >> > work
> > > > > > > > > > > > > > product,
> > > > > > > > > > > > > > >> > related to personal representation or
> > > > > > > > > > > > > > >> > services by attorneys,
psychotherapists,
> > > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > > >> > clergy,
> > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > > >> > their
> > > > > > > > > > > > > > >> assistants.
> > > > > > > > > > > > > > >> > Such communications and work product
are
> > > > > > > > > > > > > > >> > private and confidential. See User
> > > > > > > > > > > > > > >> > Agreement
> > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > >> > details.
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu #90091]
> > > > > > > > > > > > > > >> > Help
> > > > > > > > > > > > > > >> > regarding
> > > > > > > > > > > > > > >> > MET
> > > > > > > > > > > > > > >> > 8.1
> > > > > > > > > > > > Julie
> > > > > > > > > > > > > > >> > Prestopnik
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > Hi Gregory. I have not tested with
> > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > >> > 6.3.0
> > > > > > > > > > > > > > >> > of
> > > > > > > > > > > > > > >> > the
> > > > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > > compiler,
> > > > > > > > > > > > > > >> but
> > > > > > > > > > > > > > >> > rather only with lower versions
> > > > > > > > > > > > > > >> > (specifically
> > > > > > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > > > > > >> > We
> > > > > > > > > > > > > > >> > would,
> > > > > > > > > > > > of
> > > > > > > > > > > > > > >> course,
> > > > > > > > > > > > > > >> > want our code to work with higher
> > > > > > > > > > > > > > >> > versions
> > > > > > > > > > > > > > >> > as
> > > > > > > > > > > > > > >> > well.
> > > > > > > > > > > > > > >> > I
> > > > > > > > > > > > > > >> > have
> > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > yet
> > > > > > > > > > > > > > had
> > > > > > > > > > > > > > >> an
> > > > > > > > > > > > > > >> > opportunity to test with a higher
> > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > >> > like
> > > > > > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > > > > > >> > Do
> > > > > > > > > > > > > > >> > you have
> > > > > > > > > > > > > the
> > > > > > > > > > > > > > >> > ability to compile MET using a lesser
> > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > >> > of
> > > > > > > > > > > > > > >> > the
> > > > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > > > >> > compiler
> > > > > > > > > > > > to
> > > > > > > > > > > > > > >> see if
> > > > > > > > > > > > > > >> > that clears up the issues you are
> > > > > > > > > > > > > > >> > experiencing?
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > Julie
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM
Ramos,
> > > > > > > > > > > > > > >> > Mr.
> > > > > > > > > > > > > > >> > Gregory,
> > > > > > > > > > > > > > >> > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > <URL:
> > > > > > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > Greg
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22 AM
> > > > > > > > > > > > > > >> > > To: Ramos, Mr. Gregory, Contractor,
> > > > > > > > > > > > > > >> > > Code
> > > > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu
#90091]
> > > > > > > > > > > > > > >> > > Help
> > > > > > > > > > > > > > >> > > regarding
> > > > > > > > > > > > > > >> > > MET
> > > > > > > > > > > > > > >> > > 8.1
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > Hi Greg. Thank you for passing
along
> > > > > > > > > > > > > > >> > > your
> > > > > > > > > > > > > > >> > > config.log
> > > > > > > > > > > > > > >> > > file. I
> > > > > > > > > > > > > see a
> > > > > > > > > > > > > > >> > couple
> > > > > > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > Based on those errors, it looks
like
> > > > > > > > > > > > > > >> > > you
> > > > > > > > > > > > > > >> > > may
> > > > > > > > > > > > > > >> > > not
> > > > > > > > > > > > > > >> > > have
> > > > > > > > > > > > > > >> > > flex
> > > > > > > > > > > > > > >> > > and
> > > > > > > > > > > > > bison
> > > > > > > > > > > > > > >> > > installed. Please install those
and
> > > > > > > > > > > > > > >> > > try
> > > > > > > > > > > > > > >> > > running
> > > > > > > > > > > > > > >> > > configure
> > > > > > > > > > > > again.
> > > > > > > > > > > > > > >> Please
> > > > > > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > Also, I just wanted to address one
> > > > > > > > > > > > > > >> > > other
> > > > > > > > > > > > > > >> > > thing.
> > > > > > > > > > > > > > >> > > In
> > > > > > > > > > > > > > >> > > your
> > > > > > > > > > > > original
> > > > > > > > > > > > > > >> email
> > > > > > > > > > > > > > >> > you
> > > > > > > > > > > > > > >> > > listed the following as part of
your
> > > > > > > > > > > > > > >> > > "MET
> > > > > > > > > > > > > > >> > > Configuration
> > > > > > > > > > > > settings":
> > > > > > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7
> > > > > > > > > > > > > > >> > > -lpthread
> > > > > > > > > > > > > > >> > > -ldl
> > > > > > > > > > > > > > >> > > -lutil
> > > > > > > > > > > > > > >> > > -lm
> > > > > > > > > > > > > -Xlinker
> > > > > > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > However, in your config.log file it
> > > > > > > > > > > > > > >> > > looks
> > > > > > > > > > > > > > >> > > like
> > > > > > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > > > > > >> actually
> > > > > > > > > > > > > > >> > > set to be "-
L/software/depot/anaconda-
> > > > > > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > > > > > -lpthread
> > > > > > > > > > > > > > >> > -ldl
> > > > > > > > > > > > > > >> > > -lutil -lm -Xlinker -export-
dynamic",
> > > > > > > > > > > > > > >> > > which
> > > > > > > > > > > > > > >> > > is
> > > > > > > > > > > > > > >> > > correct
> > > > > > > > > > > > > > >> > > because
> > > > > > > > > > > > you
> > > > > > > > > > > > > > >> need
> > > > > > > > > > > > > > >> > to
> > > > > > > > > > > > > > >> > > have that -L part in there, so I
just
> > > > > > > > > > > > > > >> > > want
> > > > > > > > > > > > > > >> > > to
> > > > > > > > > > > > > > >> > > ensure
> > > > > > > > > > > > > > >> > > that
> > > > > > > > > > > > > > >> > > will
> > > > > > > > > > > > > stay
> > > > > > > > > > > > > > >> there
> > > > > > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > Thanks,
> > > > > > > > > > > > > > >> > > Julie
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM
Ramos,
> > > > > > > > > > > > > > >> > > Mr.
> > > > > > > > > > > > > > >> > > Gregory,
> > > > > > > > > > > > > > >> > > Contractor,
> > > > > > > > > > > > > Code
> > > > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > <URL:
> > > > > > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > >
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > Configure.log has no meaningful
> > > > > > > > > > > > > > >> > > > info:
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
> > > > > > > > > > > > > > >> > > > configure.log
> > > > > > > > > > > > > > >> > > > -bash: [ramos at predict: command
not
> > > > > > > > > > > > > > >> > > > found
> > > > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03 PM
> > > > > > > > > > > > > > >> > > > To: Ramos, Mr. Gregory,
Contractor,
> > > > > > > > > > > > > > >> > > > Code
> > > > > > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu
> > > > > > > > > > > > > > >> > > > #90091]
> > > > > > > > > > > > > > >> > > > Help
> > > > > > > > > > > > > > >> > > > regarding
> > > > > > > > > > > > > > >> > > > MET
> > > > > > > > > > > > > > >> > > > 8.1
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > I'll go ahead and assign this
ticket
> > > > > > > > > > > > > > >> > > > to
> > > > > > > > > > > > > > >> > > > Julie,
> > > > > > > > > > > > > > >> > > > and
> > > > > > > > > > > > > > >> > > > she
> > > > > > > > > > > > > > >> > > > should
> > > > > > > > > > > > be
> > > > > > > > > > > > > > >> > writing
> > > > > > > > > > > > > > >> > > > you back in the next couple of
days.
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > I do know she'll want to see both
> > > > > > > > > > > > > > >> > > > the
> > > > > > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > > > > > >> > > > file you
> > > > > > > > > > > > > > >> > generated
> > > > > > > > > > > > > > >> > > as
> > > > > > > > > > > > > > >> > > > well as the "config.log" file
from
> > > > > > > > > > > > > > >> > > > that
> > > > > > > > > > > > > > >> > > > same
> > > > > > > > > > > > > > >> > > > directory.
> > > > > > > > > > > > > > >> > > > So
> > > > > > > > > > > > > please
> > > > > > > > > > > > > > >> send
> > > > > > > > > > > > > > >> > > > those along when you get a
chance.
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > > > > > >> > > > John
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM
> > > > > > > > > > > > > > >> > > > Ramos,
> > > > > > > > > > > > > > >> > > > Mr.
> > > > > > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > > > >> > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019:
Request
> > > > > > > > > > > > > > >> > > > > 90091
> > > > > > > > > > > > > > >> > > > > was
> > > > > > > > > > > > > > >> > > > > acted
> > > > > > > > > > > > > > >> > > > > upon.
> > > > > > > > > > > > > > >> > > > > Transaction: Ticket created by
> > > > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > > > > > >> > > > > Subject: Help regarding MET 8.1
> > > > > > > > > > > > > > >> > > > > Julie
> > > > > > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > > > > > >> > > > > Requestors:
> > > > > > > > > > > > > > >> > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > >> > > > > Julie helped me compiled 8.0
using
> > > > > > > > > > > > > > >> > > > > gcc
> > > > > > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > > > > > >> > > > > and
> > > > > > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > > > > > 2.4.0.
> > > > > > > > > > > > > > >> The
> > > > > > > > > > > > > > >> > > user
> > > > > > > > > > > > > > >> > > > > asked for 8.1. I took notes
last
> > > > > > > > > > > > > > >> > > > > time,
> > > > > > > > > > > > > > >> > > > > but
> > > > > > > > > > > > > > >> > > > > running
> > > > > > > > > > > > > > >> > > > > into
> > > > > > > > > > > > > > problems:
> > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > >
MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > > MET_GSL=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > MET_PYTHON_CC=-
> > > > > > > > > > > > > > >> > I/software/depot/anaconda-
> > > > > > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g -fwrapv
-O3
> > > > > > > > > > > > > > >> > > > > -Wall
> > > > > > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > > MET_HDF=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > > MET_HDFEOS=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > > MET_NETCDF=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > MET_CAIROLIB=/software/depot/met-
> > > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > >> > > > > export MET_PYTHON_LD=-
lpython2.7
> > > > > > > > > > > > > > >> > > > > -lpthread
> > > > > > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > > > > > >> > > > > -lm
> > > > > > > > > > > > > > >> -Xlinker
> > > > > > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > > MET_GRIB2C=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > > MET_SUBDIR=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > >> > > > >
MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > >> > > > > cd /software/depot/met-8.1/met-
8.1
> > > > > > > > > > > > > > >> > > > > ./configure
> > > > > > > > > > > > > > >> > > > > --prefix=/software/depot/met-
> > > > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > > >> --enable-grib2
> > > > > > > > > > > > > > >> > > > > --enable-modis --enable-
> > > > > > > > > > > > > > >> > > > > mode_graphics
> > > > > > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > > > > > >> > > configure.log
> > > > > > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > > > > > >> > > > > configure returned with non-
zero
> > > > > > > > > > > > > > >> > > > > (127)
> > > > > > > > > > > > > > >> > > > > status
> > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >>
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > >
> > > >
> > > >
> > >
> > >
> > >
>
>
>
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Howard Soh
Time: Thu May 23 18:24:59 2019
I'm sorry for the confusion.
I thought we have two solutions when I took over this ticket from
Julie. We tried the first solution and found it did not work. You
compiled with GNU 6.3.0 but I compiled it with both GNU 6.3.0 and
7.3.0. And the same runtime error with GNU 7.3.0. I won't pursue the
first solution because it's beyond my responsibility.
The solution 2 was actually a suggestion to setup the python
environment with matching compiler for MET 8.1.
The next release will support GNU 6.3.0 or higher.
MET can not support the python environment which requires library
files from GNU 7.x.
I recommend you to create a new ticket for further issue. I would like
to close this ticket.
Cheers,
Howard
On Thu May 23 17:26:50 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> This is the statement I don't understand:
>
> Solution 1: Compile MET and third party libraries with GNU 7.x.
> It turned out MET 8.1 is not ready for GNU 6.3.0 or higher
>
> You say it doesn't work for 6.3.0 and higher, but suggest 7.x. I
don't
> know what you are says. I tried MET 8.1 with 7.x and every time I
> compile I rebuilt the external libraries.
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 23, 2019 1:12 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Known facts:
> - GNU 4.x, 5.x, and 6.x compiler work with libgfortran.so.3, but
they
> are not work with libgfortran.so.4.
> - libgfortran.so.4 exists at the PYTHON configuration
> (/software/depot/anaconda-2.4.0/lib)
> - MET 8.1 was compiled with GNU 4.4.7 but linked with
libgfortran.so.4
> which does not work with GNU 4.4.7. ==> That's why "make test"
failed
> with pb2nc.
>
>
> MET is expecting only libpython2.7.a (and three dependent libraries)
> to enable python, but /software/depot/anaconda-2.4.0/lib has more
> library files. The extra library files at /software/depot/anaconda-
> 2.4.0/lib cause the runtime error with pb2nc and other MET tools.
> Note: libpython2.7.a requires three more library files (need -ldl
> -lutil -lpthread at link time).
>
> The anaconda is collection of python packages and many packages
> requires binary (library) files. For example, cfunits package
requires
> Unidata udunits library. I'm not sure which python package but there
> is at least one python package which requires libgfortran.so.4.
>
>
> Two possible solutions:
>
> Solution 1: Compile MET and third party libraries with GNU 7.x.
> It turned out MET 8.1 is not ready for GNU 6.3.0 or higher
>
> Solution 2: Remove libgfortan.so.4 from build/run environment and
use
> libgfortan.s
>
> If I were you, I would do this way:
> 1. Copy /software/depot/anaconda-2.4.0 to /software/depot/anaconda-
> 2.4.0_MET
> 2. Delete all library files except libpython* at
> /software/depot/anaconda-2.4.0_MET/lib
> 3. Rebuild third party libraries and MET with GCC 4.4.7 with
> /software/depot/anaconda-2.4.0_MET instead of
> /software/depot/anaconda-2.4.0
> 4. Run MET with /software/depot/anaconda-2.4.0_MET/lib at
> LD_LIBRARY_PATH.
> 5. If python under MET fails, add missing library to
> /software/depot/anaconda-2.4.0_MET/lib except libgfortran.so.4
>
> Cheers,
> Howard
>
>
>
> On Thu May 23 09:47:54 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > Even gcc 4.4.7 had problems. See attachment.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, May 23, 2019 7:23 AM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > No, they are not reliable. ascii2nc did not process the arguments.
It
> > worked without argument which displays the usage (or help)
message.
> > This happens to other executables.
> >
> > Cheers,
> > Howard
> >
> > On Wed May 22 19:05:44 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > That's fine. If the make test fails, doesn't that mean the
> > > executables
> > > created aren't reliable?
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Wednesday, May 22, 2019 5:38 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > I'm sorry that MET code is not ready for newer GNU compiler. The
> > > error
> > > with "make test" was caused by changed APIs from newer gnu
> > > compiler.
> > > I
> > > fixed it for ascii2nc locally with updating two files. I tried
few
> > > MET
> > > tools and found more than 10 files should be updated.
> > >
> > > I think it's beyond helpdesk work. It's better to support the
newer
> > > version GNU compiler with next release.
> > >
> > > Cheers,
> > > Howard
> > >
> > >
> > > On Wed May 22 12:47:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Attached is the Makefile, just in case.
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Wednesday, May 22, 2019 11:34 AM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > > Prestopnik
> > > >
> > > > Would you run the same command manually and sen me the output?
> > > >
> > > > cd /software/depot/met-8.1a/met-8.1a/scripts
> > > > ../src/tools/other/ascii2nc/ascii2nc
> > > > ../data/sample_obs/ascii/sample_ascii_obs.txt
./sample_ascii.nc
> > > > -v
> > > > 2
> > > > (NOTE: the same dcommand but one line instead of multiple
lines)
> > > >
> > > > If the command works, would you send me Makefile at the
current
> > > > directory.
> > > > If not working, please run following commands and send me
> > > > ascii2nc_test.log.
> > > >
> > > > ../src/tools/other/ascii2nc/ascii2nc
> > > > ../data/sample_obs/ascii/sample_ascii_obs.txt
./sample_ascii.nc
> > > > -v
> > > > 5
> > > > -log ascii2nc_test.log
> > > >
> > > > ldd ../src/tools/other/ascii2nc/ascii2nc >> ascii2nc_test.log
> > > >
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > >
> > > > On Wed May 22 11:26:02 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > Attached find my make.log and make_test.log
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Wednesday, May 22, 2019 7:11 AM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > The runntime NetCDF library is decided by LD_LIBRARY_PATH.
> > > > > LD_LIBRARY_PATH can be changed by module loading or by user
> > > > > configurations. If the problem happens with NetCDF, would
you
> > > > > ask
> > > > > them
> > > > > to run this command and check which NetCDF library is
loaded?
> > > > >
> > > > > ldd bin/<MET_tool_name> | grep netcdf
> > > > > ldd bin/<MET_tool_name> | grep hdf
> > > > >
> > > > > for example,
> > > > > ldd bin/pb2nc | grep netcdf
> > > > > ldd bin/pb2nc | grep hdf
> > > > > ldd bin/grid_stat | grep netcdf
> > > > > ldd bin/grid_stat | grep hdf
> > > > >
> > > > > Note: There are dependency between NetCDF4 and HDF5.
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > > On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > OK, we have several people who are using the 8.1 version I
> > > > > > built.
> > > > > > We
> > > > > > use a central location:
> > > > > >
> > > > > > /software/depot
> > > > > >
> > > > > > To house all of our software. To be clear, the first build
> > > > > > went
> > > > > > OK,
> > > > > > it
> > > > > > was 'make test' that failed. So the users are using that,
but
> > > > > > someone
> > > > > > ran into an error today and they asked me about NetCDF. I
> > > > > > think
> > > > > > it
> > > > > > was
> > > > > > their setup. The same build was used on two different
> > > > > > machines,
> > > > > > one
> > > > > > had an error, one didn't.
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Tuesday, May 21, 2019 5:50 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > No, external libraries are not changed.
> > > > > >
> > > > > > Personally, I'm using newer NetCDF library (4.6.x instead
of
> > > > > > 4.4.1.1).
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > > On Tue May 21 18:39:25 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > No, that is not what I am asking. Every time I build, I
use
> > > > > > > your
> > > > > > > script which builds everything.
> > > > > > >
> > > > > > > What I am asking is, did the versions of the external
> > > > > > > libraries
> > > > > > > change?
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Tuesday, May 21, 2019 5:34 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Yes, the third party libraries should be compiled with
> > > > > > > newer
> > > > > > > version.
> > > > > > >
> > > > > > > The compile error with gnu 7.3.0 happens with gnu 6.3.0,
> > > > > > > too.
> > > > > > > The fix/patch is not ready officially. One file has to
be
> > > > > > > corrected
> > > > > > > to support newer version gnu compiler. Would you replace
> > > > > > > data_line.cc
> > > > > > > with attached file or modify it manually?
> > > > > > >
> > > > > > > Filename:
> > > > > > > met-8.1/src/basic/vx_util/data_line.cc
> > > > > > >
> > > > > > > line 202:
> > > > > > >
> > > > > > > out << prefix << sstream << Line.substr(j) << "\"\n";
==>
> > > > > > > out << prefix << sstream.str() << Line.substr(j) <<
"\"\n";
> > > > > > >
> > > > > > > line 218:
> > > > > > >
> > > > > > > out << prefix << sstream << Line.substr(j) << "\"\n";
==>
> > > > > > > out << prefix << sstream.str() << Line.substr(j) <<
"\"\n";
> > > > > > >
> > > > > > > Cheers,
> > > > > > > Howard
> > > > > > >
> > > > > > > On Tue May 21 18:21:25 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > wrote:
> > > > > > > > Did new external libraries need to be built with 8.1?
> > > > > > > >
> > > > > > > > Greg
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > Sent: Thursday, May 16, 2019 4:01 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > No new tools but many enhancements.
> > > > > > > >
> > > > > > > > It's available at
> > > > > > > > https://dtcenter.org/community-code/model-evaluation-
> > > > > > > > tools-
> > > > > > > > met/met-
> > > > > > > > version-8-1
> > > > > > > >
> > > > > > > > Cheers,
> > > > > > > > Howard
> > > > > > > >
> > > > > > > > On Thu May 16 16:46:32 2019,
> > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > wrote:
> > > > > > > > > Maybe you can answer one question while I try to
> > > > > > > > > reinstall
> > > > > > > > > everything. What features does 8.1 provide over 8.0?
> > > > > > > > >
> > > > > > > > > Greg
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Would try this command at /software/depot/met-
8.1/met-
> > > > > > > > > 8.1/scripts
> > > > > > > > > directory?
> > > > > > > > >
> > > > > > > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > > > > > > echo $LD_LIBRARY_PATH
> > > > > > > > >
> > > > > > > > > 2. Save LD_LIBRARY_PATH
> > > > > > > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > > > > > > OR
> > > > > > > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > > > > > > >
> > > > > > > > > 3. Set LD_LIBRARY_PATH without
> > > > > > > > > /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib
> > > > > > > > >
> > > > > > > > > 4. Check which libgfortran.so at
/software/depot/met-
> > > > > > > > > 8.1/met-
> > > > > > > > > 8.1/scripts directory.
> > > > > > > > >
> > > > > > > > > ldd ../src/tools/other/pb2nc/pb2nc | grep
libgfortran
> > > > > > > > > OR
> > > > > > > > > ldd
> > > > > > > > > ../bin/pb2nc | grep libgfortran
> > > > > > > > >
> > > > > > > > > 5. Check libgfortran version (should be
> > > > > > > > > libgfortran.so.3,
> > > > > > > > > not
> > > > > > > > > so.4)
> > > > > > > > >
> > > > > > > > > 6. Run the failed command manually at
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/met-
> > > > > > > > > 8.1/scripts directory if libgfortran.so.3.
> > > > > > > > >
> > > > > > > > > ../src/tools/other/pb2nc/pb2nc \
> > > > > > > > >
> > > > > > > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > > > > > > \
> > > > > > > > > ../out/pb2nc/sample_pb.nc \
> > > > > > > > > config/PB2NCConfig_G212 \
> > > > > > > > > -v 2
> > > > > > > > >
> > > > > > > > > 7. Change back LD_LIBRARY_PATH
> > > > > > > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > > > > > > OR
> > > > > > > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > > > > > > >
> > > > > > > > > Cheers,
> > > > > > > > > Howard
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > On Thu May 16 15:28:16 2019,
> > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > wrote:
> > > > > > > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-
with-
> > > > > > > > > > grib2-
> > > > > > > > > > support
> > > > > > > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > > > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > > > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > > > (0x0000003453800000)
> > > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > > (0x0000003453400000)
> > > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > > (0x0000003455800000)
> > > > > > > > > > libpng16.so.16 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > > (0x00007f7f19d0c000)
> > > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > > (0x00007f7f19af4000)
> > > > > > > > > > libm.so.6 => /lib64/libm.so.6
(0x0000003453c00000)
> > > > > > > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > > (0x00007f7f198a6000)
> > > > > > > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > > (0x00007f7f19567000)
> > > > > > > > > > libgsl.so.19 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > > (0x00007f7f19125000)
> > > > > > > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > > (0x00007f7f18eeb000)
> > > > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > > (0x00007f7f18c99000)
> > > > > > > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > > > > > (0x00007f7f18b58000)
> > > > > > > > > > libgcc_s.so.1 =>
> > > > > > > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > > > > > > (0x00007f7f18b42000)
> > > > > > > > > > libc.so.6 => /lib64/libc.so.6
(0x0000003453000000)
> > > > > > > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > > > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > > (0x00007f7f18922000)
> > > > > > > > > > libhdf5.so.10 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > > (0x00007f7f18447000)
> > > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > > (0x0000003454400000)
> > > > > > > > > > [ramos at lorenz bin]$
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Howard Soh via RT
[mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > MET is expecting "libpython2.7.so" to enable
python
> > > > > > > > > > support.
> > > > > > > > > >
> > > > > > > > > > A log message shows the python was not enabled. Is
> > > > > > > > > > python
> > > > > > > > > > supporting is critical?
> > > > > > > > > >
> > > > > > > > > > ./configure --prefix=/software/depot/met-8.1/met-
8.1
> > > > > > > > > > --enable-grib2 --enable-modis --enable-
mode_graphics
> > > > > > > > > > --enable-lidar2nc > configure.log 2>&1
> > > > > > > > > >
> > > > > > > > > > If not, you can build/run MET 8.1 with
gcc/gfortran
> > > > > > > > > > 4.4.7.
> > > > > > > > > > 1. Make sure python is not enabled
> > > > > > > > > > no "--enable-python" option for ./configure
> > > > > > > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > > > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib"
> > > > > > > > > > from
> > > > > > > > > > LD_LIBRARY_PATH at the build time and runtime
both.
> > > > > > > > > >
> > > > > > > > > > Cheers,
> > > > > > > > > > Howard
> > > > > > > > > >
> > > > > > > > > > On Thu May 16 14:17:40 2019,
> > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > wrote:
> > > > > > > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > > > > > > >
> > > > > > > > > > > ramos at leo1:~> gcc --version
> > > > > > > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright
(C)
> > > > > > > > > > > 2017
> > > > > > > > > > > Free
> > > > > > > > > > > Software Foundation, Inc.
> > > > > > > > > > > This is free software; see the source for
copying
> > > > > > > > > > > conditions.
> > > > > > > > > > > There
> > > > > > > > > > > is NO
> > > > > > > > > > > warranty; not even for MERCHANTABILITY or
FITNESS
> > > > > > > > > > > FOR
> > > > > > > > > > > A
> > > > > > > > > > > PARTICULAR PURPOSE.
> > > > > > > > > > >
> > > > > > > > > > > ramos at leo1:~> gfortran --version GNU Fortran
(GCC)
> > > > > > > > > > > 7.3.0
> > > > > > > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free
> > > > > > > > > > > Software
> > > > > > > > > > > Foundation, Inc.
> > > > > > > > > > > This is free software; see the source for
copying
> > > > > > > > > > > conditions.
> > > > > > > > > > > There
> > > > > > > > > > > is NO
> > > > > > > > > > > warranty; not even for MERCHANTABILITY or
FITNESS
> > > > > > > > > > > FOR
> > > > > > > > > > > A
> > > > > > > > > > > PARTICULAR PURPOSE.
> > > > > > > > > > >
> > > > > > > > > > > ramos at leo1:~>
> > > > > > > > > > >
> > > > > > > > > > > We don't have that version on our Red Hat
systems.
> > > > > > > > > > > Met
> > > > > > > > > > > 8.0
> > > > > > > > > > > worked on RH, but 8.1 failed on the 'make test'.
> > > > > > > > > > > The
> > > > > > > > > > > user
> > > > > > > > > > > says
> > > > > > > > > > > she is fine with the executables so far. I will
> > > > > > > > > > > have
> > > > > > > > > > > to
> > > > > > > > > > > build
> > > > > > > > > > > a
> > > > > > > > > > > gfortran 7.x version.
> > > > > > > > > > >
> > > > > > > > > > > Greg
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > From: Howard Soh via RT
[mailto:met_help at ucar.edu]
> > > > > > > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding
> > > > > > > > > > > MET
> > > > > > > > > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > Prestopnik
> > > > > > > > > > >
> > > > > > > > > > > Hello,
> > > > > > > > > > >
> > > > > > > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > > > > > > >
> > > > > > > > > > > The problem was caused by the path for python
> > > > > > > > > > > library
> > > > > > > > > > > (/software/depot/anaconda-2.4.0/lib).
> > > > > > > > > > > libgfortran.so.4
> > > > > > > > > > > exists
> > > > > > > > > > > there
> > > > > > > > > > > from the ldd output. It was used on building
MET.
> > > > > > > > > > > MET
> > > > > > > > > > > was
> > > > > > > > > > > compiled
> > > > > > > > > > > with gcc 4.4.7 which supports only
> > > > > > > > > > > libgfortran.so.3,
> > > > > > > > > > > and
> > > > > > > > > > > linked
> > > > > > > > > > > with
> > > > > > > > > > > libgfortran.so.4 because of MET_PYTHON_LD
> > > > > > > > > > > configuration.
> > > > > > > > > > > Some
> > > > > > > > > > > libraries do not support the backward
> > > > > > > > > > > compatibility.
> > > > > > > > > > > libgfortran.so
> > > > > > > > > > > is
> > > > > > > > > > > one of them. In this case, the compiler version
and
> > > > > > > > > > > library
> > > > > > > > > > > version
> > > > > > > > > > > should match.
> > > > > > > > > > >
> > > > > > > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-
8.1/met-
> > > > > > > > > > > 8.1/bin/pb2nc
> > > > > > > > > > > |grep
> > > > > > > > > > > gfortran
> > > > > > > > > > > libgfortran.so.4 =>
/software/depot/anaconda-
> > > > > > > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > > > > > > >
> > > > > > > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-
> > > > > > > > > > > 2.4.0/lib\
> > > > > > > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\
> > > > > > > > > > > -Xlinker\
> > > > > > > > > > > -export-
> > > > > > > > > > > dynamic
> > > > > > > > > > >
> > > > > > > > > > > The solution is compiling third party libraries
and
> > > > > > > > > > > MET
> > > > > > > > > > > with
> > > > > > > > > > > version
> > > > > > > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran
supports
> > > > > > > > > > > libgfortran.so.5,
> > > > > > > > > > > So the same problem will happen if MET is built
> > > > > > > > > > > with
> > > > > > > > > > > gcc/gfortran
> > > > > > > > > > > 6.x
> > > > > > > > > > > or gcc/gfortran 8.x.
> > > > > > > > > > >
> > > > > > > > > > > Cheers,
> > > > > > > > > > > Howard
> > > > > > > > > > >
> > > > > > > > > > > On Mon May 13 18:36:04 2019,
> > > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > wrote:
> > > > > > > > > > > > Attached is the config.log for NetCDf it shows
> > > > > > > > > > > > /usr/bin/gcc
> > > > > > > > > > > >
> > > > > > > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in
Red
> > > > > > > > > > > > Hat
> > > > > > > > > > > > version.
> > > > > > > > > > > >
> > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > regarding
> > > > > > > > > > > > MET
> > > > > > > > > > > > 8.1
> > > > > > > > > > > > Julie
> > > > > > > > > > > > Prestopnik
> > > > > > > > > > > >
> > > > > > > > > > > > Thank you. Unfortunately, that does not tell
me
> > > > > > > > > > > > if
> > > > > > > > > > > > the
> > > > > > > > > > > > libraries
> > > > > > > > > > > > and
> > > > > > > > > > > > the
> > > > > > > > > > > > MET code were built with the same version of
the
> > > > > > > > > > > > compiler.
> > > > > > > > > > > > I
> > > > > > > > > > > > also
> > > > > > > > > > > > do
> > > > > > > > > > > > not
> > > > > > > > > > > > see bufrlib in that list.
> > > > > > > > > > > >
> > > > > > > > > > > > Can you please tell me - were the libraries
and
> > > > > > > > > > > > the
> > > > > > > > > > > > MET
> > > > > > > > > > > > code
> > > > > > > > > > > > built
> > > > > > > > > > > > with the
> > > > > > > > > > > > same version of the compiler? I'm checking to
> > > > > > > > > > > > see
> > > > > > > > > > > > if,
> > > > > > > > > > > > for
> > > > > > > > > > > > example,
> > > > > > > > > > > > the
> > > > > > > > > > > > libraries were built with gcc-6.3.0 but the
MET
> > > > > > > > > > > > code
> > > > > > > > > > > > was
> > > > > > > > > > > > build
> > > > > > > > > > > > with
> > > > > > > > > > > > gcc-4.4.7.
> > > > > > > > > > > >
> > > > > > > > > > > > Thanks!
> > > > > > > > > > > >
> > > > > > > > > > > > Julie
> > > > > > > > > > > >
> > > > > > > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr.
> > > > > > > > > > > > Gregory,
> > > > > > > > > > > > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > > 7501.1
> > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > <URL:
> > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > You can see I am using those libraries for
MET
> > > > > > > > > > > > > 8.1:
> > > > > > > > > > > > >
> > > > > > > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > > > > > > linux-vdso.so.1 =>
> > > > > > > > > > > > > (0x00007ffd449a3000)
> > > > > > > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > > 2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > > > > > > libpthread.so.0 =>
> > > > > > > > > > > > > /lib64/libpthread.so.0
> > > > > > > > > > > > > (0x00002ab75e63b000)
> > > > > > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > > > > > (0x00002ab75e858000)
> > > > > > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > > > > > > libpng16.so.16 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > > > > > (0x00002ab75ec60000)
> > > > > > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > > > > > (0x00002ab75ee92000)
> > > > > > > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > > > > > (0x00002ab75f32f000)
> > > > > > > > > > > > > libnetcdf.so.11 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > > > > > (0x00002ab75f57c000)
> > > > > > > > > > > > > libgsl.so.19 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > > > > > > libgslcblas.so.0 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > > > > > > libjpeg.so.9 =>
> > > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > > > > > (0x00002ab75ff37000)
> > > > > > > > > > > > > libstdc++.so.6 =>
> > > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > > > > > > > > (0x00002ab760189000)
> > > > > > > > > > > > > libgcc_s.so.1 =>
> > > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > > > > > > (0x00002ab7602cb000)
> > > > > > > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > > > > > > (0x00002ab7602e0000)
> > > > > > > > > > > > > /lib64/ld-linux-x86-64.so.2
> > > > > > > > > > > > > (0x0000559353f4f000)
> > > > > > > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > > > > > (0x00002ab760675000)
> > > > > > > > > > > > > libhdf5.so.10 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > > > > > (0x00002ab760894000)
> > > > > > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > > > > > (0x00002ab760d6f000)
> > > > > > > > > > > > > [root at maury2 bin]#
> > > > > > > > > > > > >
> > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > > regarding
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > >
> > > > > > > > > > > > > Thank you, Greg. Can you please tell me -
were
> > > > > > > > > > > > > the
> > > > > > > > > > > > > libraries
> > > > > > > > > > > > > and
> > > > > > > > > > > > > the
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > code built with the same version of the
> > > > > > > > > > > > > compiler.
> > > > > > > > > > > > > I'm
> > > > > > > > > > > > > checking
> > > > > > > > > > > > > to
> > > > > > > > > > > > > see if,
> > > > > > > > > > > > > for example, the libraries were built with
gcc-
> > > > > > > > > > > > > 6.3.0
> > > > > > > > > > > > > but
> > > > > > > > > > > > > the
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > code
> > > > > > > > > > > > > was
> > > > > > > > > > > > > build with gcc-4.4.7.
> > > > > > > > > > > > >
> > > > > > > > > > > > > It sounds like we need the libraries and the
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > code
> > > > > > > > > > > > > to
> > > > > > > > > > > > > be
> > > > > > > > > > > > > built
> > > > > > > > > > > > > with the
> > > > > > > > > > > > > same version of the compiler, in this case.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Thanks for any information you can provide.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > >
> > > > > > > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr.
> > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > Code
> > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > <URL:
> > > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Find the logs attached.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Greg
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > MET
> > > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Could you please run the following:
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > which pb2nc
> > > > > > > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > and send me the output?
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Please also send your config.log and
make.log
> > > > > > > > > > > > > > file.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Thank you!
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr.
> > > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > > Code
> > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > <URL:
> > > > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > I used the buildscript. It should build
all
> > > > > > > > > > > > > > > of
> > > > > > > > > > > > > > > the
> > > > > > > > > > > > > > > external
> > > > > > > > > > > > > > > libraries,
> > > > > > > > > > > > > so
> > > > > > > > > > > > > > > I believe everything was built with the
> > > > > > > > > > > > > > > same
> > > > > > > > > > > > > > > compiler.
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Greg
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > > MET
> > > > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Hi Greg. Our developer suspects it may
be
> > > > > > > > > > > > > > > a
> > > > > > > > > > > > > > > mismatched
> > > > > > > > > > > > > compiler/library
> > > > > > > > > > > > > > > version. Was BUFRLIB installed with
the
> > > > > > > > > > > > > > > same
> > > > > > > > > > > > > > > compiler
> > > > > > > > > > > > > > > as
> > > > > > > > > > > > > > > MET?
> > > > > > > > > > > > > > > Also,
> > > > > > > > > > > > > > what
> > > > > > > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Thanks,
> > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie
> > > > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > > > > > > wrote:
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > Hi Greg. I am checking in with
another
> > > > > > > > > > > > > > > > developer
> > > > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > > > the
> > > > > > > > > > > > > > > > error
> > > > > > > > > > > > > > you
> > > > > > > > > > > > > > > > experienced. Thank you for your
> > > > > > > > > > > > > > > > patience.
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos,
> > > > > > > > > > > > > > > > Mr.
> > > > > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu>
wrote:
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> <URL:
> > > > > > > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat
4.4.7-
> > > > > > > > > > > > > > > >> 23)
> > > > > > > > > > > > > > > >> Copyright (C) 2010 Free Software
> > > > > > > > > > > > > > > >> Foundation,
> > > > > > > > > > > > > > > >> Inc.
> > > > > > > > > > > > > > > >> This is free software; see the source
> > > > > > > > > > > > > > > >> for
> > > > > > > > > > > > > > > >> copying
> > > > > > > > > > > > > > > >> conditions.
> > > > > > > > > > > > > > > >> There
> > > > > > > > > > > > > > is
> > > > > > > > > > > > > > > NO
> > > > > > > > > > > > > > > >> warranty; not even for
MERCHANTABILITY
> > > > > > > > > > > > > > > >> or
> > > > > > > > > > > > > > > >> FITNESS
> > > > > > > > > > > > > > > >> FOR
> > > > > > > > > > > > > > > >> A
> > > > > > > > > > > > > > > >> PARTICULAR
> > > > > > > > > > > > > > > >> PURPOSE.
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> Not all of the tests passed, please
see
> > > > > > > > > > > > > > > >> attachment.
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> Greg
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091]
> > > > > > > > > > > > > > > >> Help
> > > > > > > > > > > > > > > >> regarding
> > > > > > > > > > > > > > > >> MET
> > > > > > > > > > > > > > > >> 8.1
> > > > > > > > > > > > > > > >> Julie
> > > > > > > > > > > > > > > >> Prestopnik
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> Thank you for letting me know. I
will
> > > > > > > > > > > > > > > >> proceed
> > > > > > > > > > > > > > > >> with
> > > > > > > > > > > > > > > >> trying
> > > > > > > > > > > > > > > >> to
> > > > > > > > > > > > > > reproduce
> > > > > > > > > > > > > > > >> the
> > > > > > > > > > > > > > > >> problem using the gcc-6.3.0. I will
> > > > > > > > > > > > > > > >> follow
> > > > > > > > > > > > > > > >> up
> > > > > > > > > > > > > > > >> once
> > > > > > > > > > > > > > > >> I
> > > > > > > > > > > > > > > >> have
> > > > > > > > > > > > > > > >> more
> > > > > > > > > > > > > > > >> information.
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> Julie
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos,
> > > > > > > > > > > > > > > >> Mr.
> > > > > > > > > > > > > > > >> Gregory,
> > > > > > > > > > > > > > > >> Contractor,
> > > > > > > > > > > > > > > >> Code
> > > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > <URL:
> > > > > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > When I compiled MET 8.0 the last
time,
> > > > > > > > > > > > > > > >> > it
> > > > > > > > > > > > > > > >> > worked.
> > > > > > > > > > > > > > > >> > I
> > > > > > > > > > > > > > > >> > was
> > > > > > > > > > > > > > > >> > also
> > > > > > > > > > > > > > > >> > able
> > > > > > > > > > > > > to
> > > > > > > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > > > > > > >> > Password:
> > > > > > > > > > > > > > > >> > Last login: Thu May 9 17:38:30
2019
> > > > > > > > > > > > > > > >> > from
> > > > > > > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > *** Welcome to Cray eLogin Server
***
> > > > > > > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > > > > > > >> > 16 vcores, boot_memtotal:
257916mb
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > You are accessing a U.S. Government
> > > > > > > > > > > > > > > >> > (USG)
> > > > > > > > > > > > > > > >> > Information
> > > > > > > > > > > > > > > >> > System
> > > > > > > > > > > > > > > >> > (IS)
> > > > > > > > > > > > > > that
> > > > > > > > > > > > > > > >> is
> > > > > > > > > > > > > > > >> > provided for USG-authorized use
only.
> > > > > > > > > > > > > > > >> > By using this IS (which includes
any
> > > > > > > > > > > > > > > >> > device
> > > > > > > > > > > > > > > >> > attached
> > > > > > > > > > > > > > > >> > to
> > > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > > > >> > IS),
> > > > > > > > > > > > > > you
> > > > > > > > > > > > > > > >> > consent to the following
conditions:
> > > > > > > > > > > > > > > >> > -The USG routinely intercepts and
> > > > > > > > > > > > > > > >> > monitors
> > > > > > > > > > > > > > > >> > communications
> > > > > > > > > > > > > > > >> > on
> > > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > IS
> > > > > > > > > > > > > > > for
> > > > > > > > > > > > > > > >> > purposes including, but not limited
> > > > > > > > > > > > > > > >> > to,
> > > > > > > > > > > > > > > >> > penetration testing, COMSEC
> > > > > > > > > > > > > > > >> > monitoring,
> > > > > > > > > > > > > > > >> > network
> > > > > > > > > > > > > > > >> > operations
> > > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > > > defense,
> > > > > > > > > > > > > > > >> > personnel misconduct (PM), law
> > > > > > > > > > > > > > > >> > enforcement
> > > > > > > > > > > > > > > >> > (LE),
> > > > > > > > > > > > > > > >> > and counterintelligence (CI)
> > > > > > > > > > > > > > > >> > investigations.
> > > > > > > > > > > > > > > >> > -At any time, the USG may inspect
and
> > > > > > > > > > > > > > > >> > seize
> > > > > > > > > > > > > > > >> > data
> > > > > > > > > > > > > > > >> > stored
> > > > > > > > > > > > > > > >> > on
> > > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > IS.
> > > > > > > > > > > > > > > >> > -Communications using, or data
stored
> > > > > > > > > > > > > > > >> > on,
> > > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > > > >> > IS
> > > > > > > > > > > > > > > >> > are
> > > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > > >> > private,
> > > > > > > > > > > > > > are
> > > > > > > > > > > > > > > >> > subject to routine monitoring,
> > > > > > > > > > > > > > > >> > interception,
> > > > > > > > > > > > > > > >> > and search, and may be disclosed or
> > > > > > > > > > > > > > > >> > used
> > > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > > >> > any
> > > > > > > > > > > > > > > >> > USG-
> > > > > > > > > > > > > > > >> > authorized
> > > > > > > > > > > > > > > purpose.
> > > > > > > > > > > > > > > >> > -This IS includes security measures
> > > > > > > > > > > > > > > >> > (e.g.,
> > > > > > > > > > > > > > > >> > authentication
> > > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > access
> > > > > > > > > > > > > > > >> > controls) to protect USG interests
--
> > > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > > > > > > >> > -Notwithstanding the above, using
this
> > > > > > > > > > > > > > > >> > IS
> > > > > > > > > > > > > > > >> > does
> > > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > > >> > constitute
> > > > > > > > > > > > > > consent
> > > > > > > > > > > > > > > to
> > > > > > > > > > > > > > > >> > PM, LE or CI investigative
searching
> > > > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > > > >> > monitoring of the content of
> > > > > > > > > > > > > > > >> > privileged
> > > > > > > > > > > > > > > >> > communications,
> > > > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > > > >> > work
> > > > > > > > > > > > > > > product,
> > > > > > > > > > > > > > > >> > related to personal representation
or
> > > > > > > > > > > > > > > >> > services by attorneys,
> > > > > > > > > > > > > > > >> > psychotherapists,
> > > > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > > > >> > clergy,
> > > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > > > >> > their
> > > > > > > > > > > > > > > >> assistants.
> > > > > > > > > > > > > > > >> > Such communications and work
product
> > > > > > > > > > > > > > > >> > are
> > > > > > > > > > > > > > > >> > private and confidential. See User
> > > > > > > > > > > > > > > >> > Agreement
> > > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > > >> > details.
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor,
> > > > > > > > > > > > > > > >> > Code
> > > > > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu
#90091]
> > > > > > > > > > > > > > > >> > Help
> > > > > > > > > > > > > > > >> > regarding
> > > > > > > > > > > > > > > >> > MET
> > > > > > > > > > > > > > > >> > 8.1
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > >> > Prestopnik
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > Hi Gregory. I have not tested with
> > > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > > >> > 6.3.0
> > > > > > > > > > > > > > > >> > of
> > > > > > > > > > > > > > > >> > the
> > > > > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > > > compiler,
> > > > > > > > > > > > > > > >> but
> > > > > > > > > > > > > > > >> > rather only with lower versions
> > > > > > > > > > > > > > > >> > (specifically
> > > > > > > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > > > > > > >> > We
> > > > > > > > > > > > > > > >> > would,
> > > > > > > > > > > > > of
> > > > > > > > > > > > > > > >> course,
> > > > > > > > > > > > > > > >> > want our code to work with higher
> > > > > > > > > > > > > > > >> > versions
> > > > > > > > > > > > > > > >> > as
> > > > > > > > > > > > > > > >> > well.
> > > > > > > > > > > > > > > >> > I
> > > > > > > > > > > > > > > >> > have
> > > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > yet
> > > > > > > > > > > > > > > had
> > > > > > > > > > > > > > > >> an
> > > > > > > > > > > > > > > >> > opportunity to test with a higher
> > > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > > >> > like
> > > > > > > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > > > > > > >> > Do
> > > > > > > > > > > > > > > >> > you have
> > > > > > > > > > > > > > the
> > > > > > > > > > > > > > > >> > ability to compile MET using a
lesser
> > > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > > >> > of
> > > > > > > > > > > > > > > >> > the
> > > > > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > > > > >> > compiler
> > > > > > > > > > > > > to
> > > > > > > > > > > > > > > >> see if
> > > > > > > > > > > > > > > >> > that clears up the issues you are
> > > > > > > > > > > > > > > >> > experiencing?
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > Julie
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM
Ramos,
> > > > > > > > > > > > > > > >> > Mr.
> > > > > > > > > > > > > > > >> > Gregory,
> > > > > > > > > > > > > > > >> > Contractor,
> > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > <URL:
> > > > > > > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Greg
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22
AM
> > > > > > > > > > > > > > > >> > > To: Ramos, Mr. Gregory,
Contractor,
> > > > > > > > > > > > > > > >> > > Code
> > > > > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu
> > > > > > > > > > > > > > > >> > > #90091]
> > > > > > > > > > > > > > > >> > > Help
> > > > > > > > > > > > > > > >> > > regarding
> > > > > > > > > > > > > > > >> > > MET
> > > > > > > > > > > > > > > >> > > 8.1
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Hi Greg. Thank you for passing
> > > > > > > > > > > > > > > >> > > along
> > > > > > > > > > > > > > > >> > > your
> > > > > > > > > > > > > > > >> > > config.log
> > > > > > > > > > > > > > > >> > > file. I
> > > > > > > > > > > > > > see a
> > > > > > > > > > > > > > > >> > couple
> > > > > > > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Based on those errors, it looks
like
> > > > > > > > > > > > > > > >> > > you
> > > > > > > > > > > > > > > >> > > may
> > > > > > > > > > > > > > > >> > > not
> > > > > > > > > > > > > > > >> > > have
> > > > > > > > > > > > > > > >> > > flex
> > > > > > > > > > > > > > > >> > > and
> > > > > > > > > > > > > > bison
> > > > > > > > > > > > > > > >> > > installed. Please install those
and
> > > > > > > > > > > > > > > >> > > try
> > > > > > > > > > > > > > > >> > > running
> > > > > > > > > > > > > > > >> > > configure
> > > > > > > > > > > > > again.
> > > > > > > > > > > > > > > >> Please
> > > > > > > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Also, I just wanted to address
one
> > > > > > > > > > > > > > > >> > > other
> > > > > > > > > > > > > > > >> > > thing.
> > > > > > > > > > > > > > > >> > > In
> > > > > > > > > > > > > > > >> > > your
> > > > > > > > > > > > > original
> > > > > > > > > > > > > > > >> email
> > > > > > > > > > > > > > > >> > you
> > > > > > > > > > > > > > > >> > > listed the following as part of
your
> > > > > > > > > > > > > > > >> > > "MET
> > > > > > > > > > > > > > > >> > > Configuration
> > > > > > > > > > > > > settings":
> > > > > > > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7
> > > > > > > > > > > > > > > >> > > -lpthread
> > > > > > > > > > > > > > > >> > > -ldl
> > > > > > > > > > > > > > > >> > > -lutil
> > > > > > > > > > > > > > > >> > > -lm
> > > > > > > > > > > > > > -Xlinker
> > > > > > > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > However, in your config.log file
it
> > > > > > > > > > > > > > > >> > > looks
> > > > > > > > > > > > > > > >> > > like
> > > > > > > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > > > > > > >> actually
> > > > > > > > > > > > > > > >> > > set to be "-
> > > > > > > > > > > > > > > >> > > L/software/depot/anaconda-
> > > > > > > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > > > > > > -lpthread
> > > > > > > > > > > > > > > >> > -ldl
> > > > > > > > > > > > > > > >> > > -lutil -lm -Xlinker -export-
> > > > > > > > > > > > > > > >> > > dynamic",
> > > > > > > > > > > > > > > >> > > which
> > > > > > > > > > > > > > > >> > > is
> > > > > > > > > > > > > > > >> > > correct
> > > > > > > > > > > > > > > >> > > because
> > > > > > > > > > > > > you
> > > > > > > > > > > > > > > >> need
> > > > > > > > > > > > > > > >> > to
> > > > > > > > > > > > > > > >> > > have that -L part in there, so I
> > > > > > > > > > > > > > > >> > > just
> > > > > > > > > > > > > > > >> > > want
> > > > > > > > > > > > > > > >> > > to
> > > > > > > > > > > > > > > >> > > ensure
> > > > > > > > > > > > > > > >> > > that
> > > > > > > > > > > > > > > >> > > will
> > > > > > > > > > > > > > stay
> > > > > > > > > > > > > > > >> there
> > > > > > > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Thanks,
> > > > > > > > > > > > > > > >> > > Julie
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM
> > > > > > > > > > > > > > > >> > > Ramos,
> > > > > > > > > > > > > > > >> > > Mr.
> > > > > > > > > > > > > > > >> > > Gregory,
> > > > > > > > > > > > > > > >> > > Contractor,
> > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > <URL:
> > > > > > > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > Configure.log has no meaningful
> > > > > > > > > > > > > > > >> > > > info:
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
> > > > > > > > > > > > > > > >> > > > configure.log
> > > > > > > > > > > > > > > >> > > > -bash: [ramos at predict: command
not
> > > > > > > > > > > > > > > >> > > > found
> > > > > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03
PM
> > > > > > > > > > > > > > > >> > > > To: Ramos, Mr. Gregory,
> > > > > > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > > > > > >> > > > Code
> > > > > > > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu
> > > > > > > > > > > > > > > >> > > > #90091]
> > > > > > > > > > > > > > > >> > > > Help
> > > > > > > > > > > > > > > >> > > > regarding
> > > > > > > > > > > > > > > >> > > > MET
> > > > > > > > > > > > > > > >> > > > 8.1
> > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > I'll go ahead and assign this
> > > > > > > > > > > > > > > >> > > > ticket
> > > > > > > > > > > > > > > >> > > > to
> > > > > > > > > > > > > > > >> > > > Julie,
> > > > > > > > > > > > > > > >> > > > and
> > > > > > > > > > > > > > > >> > > > she
> > > > > > > > > > > > > > > >> > > > should
> > > > > > > > > > > > > be
> > > > > > > > > > > > > > > >> > writing
> > > > > > > > > > > > > > > >> > > > you back in the next couple of
> > > > > > > > > > > > > > > >> > > > days.
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > I do know she'll want to see
both
> > > > > > > > > > > > > > > >> > > > the
> > > > > > > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > > > > > > >> > > > file you
> > > > > > > > > > > > > > > >> > generated
> > > > > > > > > > > > > > > >> > > as
> > > > > > > > > > > > > > > >> > > > well as the "config.log" file
from
> > > > > > > > > > > > > > > >> > > > that
> > > > > > > > > > > > > > > >> > > > same
> > > > > > > > > > > > > > > >> > > > directory.
> > > > > > > > > > > > > > > >> > > > So
> > > > > > > > > > > > > > please
> > > > > > > > > > > > > > > >> send
> > > > > > > > > > > > > > > >> > > > those along when you get a
chance.
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > > > > > > >> > > > John
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM
> > > > > > > > > > > > > > > >> > > > Ramos,
> > > > > > > > > > > > > > > >> > > > Mr.
> > > > > > > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > > > > >> > > > via RT <met_help at ucar.edu>
wrote:
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019:
> > > > > > > > > > > > > > > >> > > > > Request
> > > > > > > > > > > > > > > >> > > > > 90091
> > > > > > > > > > > > > > > >> > > > > was
> > > > > > > > > > > > > > > >> > > > > acted
> > > > > > > > > > > > > > > >> > > > > upon.
> > > > > > > > > > > > > > > >> > > > > Transaction: Ticket created
by
> > > > > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > > > > > > >> > > > > Subject: Help regarding MET
8.1
> > > > > > > > > > > > > > > >> > > > > Julie
> > > > > > > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > > > > > > >> > > > > Requestors:
> > > > > > > > > > > > > > > >> > > > >
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > > > Julie helped me compiled 8.0
> > > > > > > > > > > > > > > >> > > > > using
> > > > > > > > > > > > > > > >> > > > > gcc
> > > > > > > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > > > > > > >> > > > > and
> > > > > > > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > > > > > > 2.4.0.
> > > > > > > > > > > > > > > >> The
> > > > > > > > > > > > > > > >> > > user
> > > > > > > > > > > > > > > >> > > > > asked for 8.1. I took notes
last
> > > > > > > > > > > > > > > >> > > > > time,
> > > > > > > > > > > > > > > >> > > > > but
> > > > > > > > > > > > > > > >> > > > > running
> > > > > > > > > > > > > > > >> > > > > into
> > > > > > > > > > > > > > > problems:
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > > MET_GSL=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > MET_PYTHON_CC=-
> > > > > > > > > > > > > > > >> > I/software/depot/anaconda-
> > > > > > > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g
-fwrapv
> > > > > > > > > > > > > > > >> > > > > -O3
> > > > > > > > > > > > > > > >> > > > > -Wall
> > > > > > > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > > MET_HDF=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_HDFEOS=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_NETCDF=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > MET_CAIROLIB=/software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > > >> > > > > export MET_PYTHON_LD=-
lpython2.7
> > > > > > > > > > > > > > > >> > > > > -lpthread
> > > > > > > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > > > > > > >> > > > > -lm
> > > > > > > > > > > > > > > >> -Xlinker
> > > > > > > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_GRIB2C=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_SUBDIR=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > > >> > > > > cd /software/depot/met-
8.1/met-
> > > > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > > > >> > > > > ./configure
> > > > > > > > > > > > > > > >> > > > > --prefix=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > > > >> --enable-grib2
> > > > > > > > > > > > > > > >> > > > > --enable-modis --enable-
> > > > > > > > > > > > > > > >> > > > > mode_graphics
> > > > > > > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > > > > > > >> > > configure.log
> > > > > > > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > > > > > > >> > > > > configure returned with non-
zero
> > > > > > > > > > > > > > > >> > > > > (127)
> > > > > > > > > > > > > > > >> > > > > status
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > >
> >
> >
> >
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Thu May 23 18:38:23 2019
Thank you for the clarification. I will work on the 2nd solution this
weekend.
Greg
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Thursday, May 23, 2019 5:25 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
I'm sorry for the confusion.
I thought we have two solutions when I took over this ticket from
Julie. We tried the first solution and found it did not work. You
compiled with GNU 6.3.0 but I compiled it with both GNU 6.3.0 and
7.3.0. And the same runtime error with GNU 7.3.0. I won't pursue the
first solution because it's beyond my responsibility.
The solution 2 was actually a suggestion to setup the python
environment with matching compiler for MET 8.1.
The next release will support GNU 6.3.0 or higher.
MET can not support the python environment which requires library
files from GNU 7.x.
I recommend you to create a new ticket for further issue. I would like
to close this ticket.
Cheers,
Howard
On Thu May 23 17:26:50 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> This is the statement I don't understand:
>
> Solution 1: Compile MET and third party libraries with GNU 7.x.
> It turned out MET 8.1 is not ready for GNU 6.3.0 or higher
>
> You say it doesn't work for 6.3.0 and higher, but suggest 7.x. I
don't
> know what you are says. I tried MET 8.1 with 7.x and every time I
> compile I rebuilt the external libraries.
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 23, 2019 1:12 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Known facts:
> - GNU 4.x, 5.x, and 6.x compiler work with libgfortran.so.3, but
they
> are not work with libgfortran.so.4.
> - libgfortran.so.4 exists at the PYTHON configuration
> (/software/depot/anaconda-2.4.0/lib)
> - MET 8.1 was compiled with GNU 4.4.7 but linked with
libgfortran.so.4
> which does not work with GNU 4.4.7. ==> That's why "make test"
failed
> with pb2nc.
>
>
> MET is expecting only libpython2.7.a (and three dependent libraries)
> to enable python, but /software/depot/anaconda-2.4.0/lib has more
> library files. The extra library files at /software/depot/anaconda-
> 2.4.0/lib cause the runtime error with pb2nc and other MET tools.
> Note: libpython2.7.a requires three more library files (need -ldl
> -lutil -lpthread at link time).
>
> The anaconda is collection of python packages and many packages
> requires binary (library) files. For example, cfunits package
requires
> Unidata udunits library. I'm not sure which python package but there
> is at least one python package which requires libgfortran.so.4.
>
>
> Two possible solutions:
>
> Solution 1: Compile MET and third party libraries with GNU 7.x.
> It turned out MET 8.1 is not ready for GNU 6.3.0 or higher
>
> Solution 2: Remove libgfortan.so.4 from build/run environment and
use
> libgfortan.s
>
> If I were you, I would do this way:
> 1. Copy /software/depot/anaconda-2.4.0 to /software/depot/anaconda-
> 2.4.0_MET
> 2. Delete all library files except libpython* at
> /software/depot/anaconda-2.4.0_MET/lib
> 3. Rebuild third party libraries and MET with GCC 4.4.7 with
> /software/depot/anaconda-2.4.0_MET instead of
> /software/depot/anaconda-2.4.0
> 4. Run MET with /software/depot/anaconda-2.4.0_MET/lib at
> LD_LIBRARY_PATH.
> 5. If python under MET fails, add missing library to
> /software/depot/anaconda-2.4.0_MET/lib except libgfortran.so.4
>
> Cheers,
> Howard
>
>
>
> On Thu May 23 09:47:54 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > Even gcc 4.4.7 had problems. See attachment.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, May 23, 2019 7:23 AM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > No, they are not reliable. ascii2nc did not process the arguments.
It
> > worked without argument which displays the usage (or help)
message.
> > This happens to other executables.
> >
> > Cheers,
> > Howard
> >
> > On Wed May 22 19:05:44 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > That's fine. If the make test fails, doesn't that mean the
> > > executables
> > > created aren't reliable?
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Wednesday, May 22, 2019 5:38 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > I'm sorry that MET code is not ready for newer GNU compiler. The
> > > error
> > > with "make test" was caused by changed APIs from newer gnu
> > > compiler.
> > > I
> > > fixed it for ascii2nc locally with updating two files. I tried
few
> > > MET
> > > tools and found more than 10 files should be updated.
> > >
> > > I think it's beyond helpdesk work. It's better to support the
newer
> > > version GNU compiler with next release.
> > >
> > > Cheers,
> > > Howard
> > >
> > >
> > > On Wed May 22 12:47:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Attached is the Makefile, just in case.
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Wednesday, May 22, 2019 11:34 AM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > > Prestopnik
> > > >
> > > > Would you run the same command manually and sen me the output?
> > > >
> > > > cd /software/depot/met-8.1a/met-8.1a/scripts
> > > > ../src/tools/other/ascii2nc/ascii2nc
> > > > ../data/sample_obs/ascii/sample_ascii_obs.txt
./sample_ascii.nc
> > > > -v
> > > > 2
> > > > (NOTE: the same dcommand but one line instead of multiple
lines)
> > > >
> > > > If the command works, would you send me Makefile at the
current
> > > > directory.
> > > > If not working, please run following commands and send me
> > > > ascii2nc_test.log.
> > > >
> > > > ../src/tools/other/ascii2nc/ascii2nc
> > > > ../data/sample_obs/ascii/sample_ascii_obs.txt
./sample_ascii.nc
> > > > -v
> > > > 5
> > > > -log ascii2nc_test.log
> > > >
> > > > ldd ../src/tools/other/ascii2nc/ascii2nc >> ascii2nc_test.log
> > > >
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > >
> > > > On Wed May 22 11:26:02 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > Attached find my make.log and make_test.log
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Wednesday, May 22, 2019 7:11 AM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > The runntime NetCDF library is decided by LD_LIBRARY_PATH.
> > > > > LD_LIBRARY_PATH can be changed by module loading or by user
> > > > > configurations. If the problem happens with NetCDF, would
you
> > > > > ask
> > > > > them
> > > > > to run this command and check which NetCDF library is
loaded?
> > > > >
> > > > > ldd bin/<MET_tool_name> | grep netcdf
> > > > > ldd bin/<MET_tool_name> | grep hdf
> > > > >
> > > > > for example,
> > > > > ldd bin/pb2nc | grep netcdf
> > > > > ldd bin/pb2nc | grep hdf
> > > > > ldd bin/grid_stat | grep netcdf
> > > > > ldd bin/grid_stat | grep hdf
> > > > >
> > > > > Note: There are dependency between NetCDF4 and HDF5.
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > > On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > OK, we have several people who are using the 8.1 version I
> > > > > > built.
> > > > > > We
> > > > > > use a central location:
> > > > > >
> > > > > > /software/depot
> > > > > >
> > > > > > To house all of our software. To be clear, the first build
> > > > > > went
> > > > > > OK,
> > > > > > it
> > > > > > was 'make test' that failed. So the users are using that,
but
> > > > > > someone
> > > > > > ran into an error today and they asked me about NetCDF. I
> > > > > > think
> > > > > > it
> > > > > > was
> > > > > > their setup. The same build was used on two different
> > > > > > machines,
> > > > > > one
> > > > > > had an error, one didn't.
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Tuesday, May 21, 2019 5:50 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > No, external libraries are not changed.
> > > > > >
> > > > > > Personally, I'm using newer NetCDF library (4.6.x instead
of
> > > > > > 4.4.1.1).
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > > On Tue May 21 18:39:25 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > No, that is not what I am asking. Every time I build, I
use
> > > > > > > your
> > > > > > > script which builds everything.
> > > > > > >
> > > > > > > What I am asking is, did the versions of the external
> > > > > > > libraries
> > > > > > > change?
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Tuesday, May 21, 2019 5:34 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Yes, the third party libraries should be compiled with
> > > > > > > newer
> > > > > > > version.
> > > > > > >
> > > > > > > The compile error with gnu 7.3.0 happens with gnu 6.3.0,
> > > > > > > too.
> > > > > > > The fix/patch is not ready officially. One file has to
be
> > > > > > > corrected
> > > > > > > to support newer version gnu compiler. Would you replace
> > > > > > > data_line.cc
> > > > > > > with attached file or modify it manually?
> > > > > > >
> > > > > > > Filename:
> > > > > > > met-8.1/src/basic/vx_util/data_line.cc
> > > > > > >
> > > > > > > line 202:
> > > > > > >
> > > > > > > out << prefix << sstream << Line.substr(j) << "\"\n";
==>
> > > > > > > out << prefix << sstream.str() << Line.substr(j) <<
"\"\n";
> > > > > > >
> > > > > > > line 218:
> > > > > > >
> > > > > > > out << prefix << sstream << Line.substr(j) << "\"\n";
==>
> > > > > > > out << prefix << sstream.str() << Line.substr(j) <<
"\"\n";
> > > > > > >
> > > > > > > Cheers,
> > > > > > > Howard
> > > > > > >
> > > > > > > On Tue May 21 18:21:25 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > wrote:
> > > > > > > > Did new external libraries need to be built with 8.1?
> > > > > > > >
> > > > > > > > Greg
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > Sent: Thursday, May 16, 2019 4:01 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > No new tools but many enhancements.
> > > > > > > >
> > > > > > > > It's available at
> > > > > > > > https://dtcenter.org/community-code/model-evaluation-
> > > > > > > > tools-
> > > > > > > > met/met-
> > > > > > > > version-8-1
> > > > > > > >
> > > > > > > > Cheers,
> > > > > > > > Howard
> > > > > > > >
> > > > > > > > On Thu May 16 16:46:32 2019,
> > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > wrote:
> > > > > > > > > Maybe you can answer one question while I try to
> > > > > > > > > reinstall
> > > > > > > > > everything. What features does 8.1 provide over 8.0?
> > > > > > > > >
> > > > > > > > > Greg
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Would try this command at /software/depot/met-
8.1/met-
> > > > > > > > > 8.1/scripts
> > > > > > > > > directory?
> > > > > > > > >
> > > > > > > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > > > > > > echo $LD_LIBRARY_PATH
> > > > > > > > >
> > > > > > > > > 2. Save LD_LIBRARY_PATH
> > > > > > > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > > > > > > OR
> > > > > > > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > > > > > > >
> > > > > > > > > 3. Set LD_LIBRARY_PATH without
> > > > > > > > > /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib
> > > > > > > > >
> > > > > > > > > 4. Check which libgfortran.so at
/software/depot/met-
> > > > > > > > > 8.1/met-
> > > > > > > > > 8.1/scripts directory.
> > > > > > > > >
> > > > > > > > > ldd ../src/tools/other/pb2nc/pb2nc | grep
libgfortran
> > > > > > > > > OR
> > > > > > > > > ldd
> > > > > > > > > ../bin/pb2nc | grep libgfortran
> > > > > > > > >
> > > > > > > > > 5. Check libgfortran version (should be
> > > > > > > > > libgfortran.so.3,
> > > > > > > > > not
> > > > > > > > > so.4)
> > > > > > > > >
> > > > > > > > > 6. Run the failed command manually at
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/met-
> > > > > > > > > 8.1/scripts directory if libgfortran.so.3.
> > > > > > > > >
> > > > > > > > > ../src/tools/other/pb2nc/pb2nc \
> > > > > > > > >
> > > > > > > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > > > > > > \
> > > > > > > > > ../out/pb2nc/sample_pb.nc \
> > > > > > > > > config/PB2NCConfig_G212 \
> > > > > > > > > -v 2
> > > > > > > > >
> > > > > > > > > 7. Change back LD_LIBRARY_PATH
> > > > > > > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > > > > > > OR
> > > > > > > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > > > > > > >
> > > > > > > > > Cheers,
> > > > > > > > > Howard
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > On Thu May 16 15:28:16 2019,
> > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > wrote:
> > > > > > > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-
with-
> > > > > > > > > > grib2-
> > > > > > > > > > support
> > > > > > > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > > > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > > > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > > > (0x0000003453800000)
> > > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > > (0x0000003453400000)
> > > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > > (0x0000003455800000)
> > > > > > > > > > libpng16.so.16 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > > (0x00007f7f19d0c000)
> > > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > > (0x00007f7f19af4000)
> > > > > > > > > > libm.so.6 => /lib64/libm.so.6
(0x0000003453c00000)
> > > > > > > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > > (0x00007f7f198a6000)
> > > > > > > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > > (0x00007f7f19567000)
> > > > > > > > > > libgsl.so.19 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > > (0x00007f7f19125000)
> > > > > > > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > > (0x00007f7f18eeb000)
> > > > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > > (0x00007f7f18c99000)
> > > > > > > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > > > > > (0x00007f7f18b58000)
> > > > > > > > > > libgcc_s.so.1 =>
> > > > > > > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > > > > > > (0x00007f7f18b42000)
> > > > > > > > > > libc.so.6 => /lib64/libc.so.6
(0x0000003453000000)
> > > > > > > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > > > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > > (0x00007f7f18922000)
> > > > > > > > > > libhdf5.so.10 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > > (0x00007f7f18447000)
> > > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > > (0x0000003454400000)
> > > > > > > > > > [ramos at lorenz bin]$
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Howard Soh via RT
[mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > MET is expecting "libpython2.7.so" to enable
python
> > > > > > > > > > support.
> > > > > > > > > >
> > > > > > > > > > A log message shows the python was not enabled. Is
> > > > > > > > > > python
> > > > > > > > > > supporting is critical?
> > > > > > > > > >
> > > > > > > > > > ./configure --prefix=/software/depot/met-8.1/met-
8.1
> > > > > > > > > > --enable-grib2 --enable-modis --enable-
mode_graphics
> > > > > > > > > > --enable-lidar2nc > configure.log 2>&1
> > > > > > > > > >
> > > > > > > > > > If not, you can build/run MET 8.1 with
gcc/gfortran
> > > > > > > > > > 4.4.7.
> > > > > > > > > > 1. Make sure python is not enabled
> > > > > > > > > > no "--enable-python" option for ./configure
> > > > > > > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > > > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib"
> > > > > > > > > > from
> > > > > > > > > > LD_LIBRARY_PATH at the build time and runtime
both.
> > > > > > > > > >
> > > > > > > > > > Cheers,
> > > > > > > > > > Howard
> > > > > > > > > >
> > > > > > > > > > On Thu May 16 14:17:40 2019,
> > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > wrote:
> > > > > > > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > > > > > > >
> > > > > > > > > > > ramos at leo1:~> gcc --version
> > > > > > > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright
(C)
> > > > > > > > > > > 2017
> > > > > > > > > > > Free
> > > > > > > > > > > Software Foundation, Inc.
> > > > > > > > > > > This is free software; see the source for
copying
> > > > > > > > > > > conditions.
> > > > > > > > > > > There
> > > > > > > > > > > is NO
> > > > > > > > > > > warranty; not even for MERCHANTABILITY or
FITNESS
> > > > > > > > > > > FOR
> > > > > > > > > > > A
> > > > > > > > > > > PARTICULAR PURPOSE.
> > > > > > > > > > >
> > > > > > > > > > > ramos at leo1:~> gfortran --version GNU Fortran
(GCC)
> > > > > > > > > > > 7.3.0
> > > > > > > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free
> > > > > > > > > > > Software
> > > > > > > > > > > Foundation, Inc.
> > > > > > > > > > > This is free software; see the source for
copying
> > > > > > > > > > > conditions.
> > > > > > > > > > > There
> > > > > > > > > > > is NO
> > > > > > > > > > > warranty; not even for MERCHANTABILITY or
FITNESS
> > > > > > > > > > > FOR
> > > > > > > > > > > A
> > > > > > > > > > > PARTICULAR PURPOSE.
> > > > > > > > > > >
> > > > > > > > > > > ramos at leo1:~>
> > > > > > > > > > >
> > > > > > > > > > > We don't have that version on our Red Hat
systems.
> > > > > > > > > > > Met
> > > > > > > > > > > 8.0
> > > > > > > > > > > worked on RH, but 8.1 failed on the 'make test'.
> > > > > > > > > > > The
> > > > > > > > > > > user
> > > > > > > > > > > says
> > > > > > > > > > > she is fine with the executables so far. I will
> > > > > > > > > > > have
> > > > > > > > > > > to
> > > > > > > > > > > build
> > > > > > > > > > > a
> > > > > > > > > > > gfortran 7.x version.
> > > > > > > > > > >
> > > > > > > > > > > Greg
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > From: Howard Soh via RT
[mailto:met_help at ucar.edu]
> > > > > > > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding
> > > > > > > > > > > MET
> > > > > > > > > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > Prestopnik
> > > > > > > > > > >
> > > > > > > > > > > Hello,
> > > > > > > > > > >
> > > > > > > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > > > > > > >
> > > > > > > > > > > The problem was caused by the path for python
> > > > > > > > > > > library
> > > > > > > > > > > (/software/depot/anaconda-2.4.0/lib).
> > > > > > > > > > > libgfortran.so.4
> > > > > > > > > > > exists
> > > > > > > > > > > there
> > > > > > > > > > > from the ldd output. It was used on building
MET.
> > > > > > > > > > > MET
> > > > > > > > > > > was
> > > > > > > > > > > compiled
> > > > > > > > > > > with gcc 4.4.7 which supports only
> > > > > > > > > > > libgfortran.so.3,
> > > > > > > > > > > and
> > > > > > > > > > > linked
> > > > > > > > > > > with
> > > > > > > > > > > libgfortran.so.4 because of MET_PYTHON_LD
> > > > > > > > > > > configuration.
> > > > > > > > > > > Some
> > > > > > > > > > > libraries do not support the backward
> > > > > > > > > > > compatibility.
> > > > > > > > > > > libgfortran.so
> > > > > > > > > > > is
> > > > > > > > > > > one of them. In this case, the compiler version
and
> > > > > > > > > > > library
> > > > > > > > > > > version
> > > > > > > > > > > should match.
> > > > > > > > > > >
> > > > > > > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-
8.1/met-
> > > > > > > > > > > 8.1/bin/pb2nc
> > > > > > > > > > > |grep
> > > > > > > > > > > gfortran
> > > > > > > > > > > libgfortran.so.4 =>
/software/depot/anaconda-
> > > > > > > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > > > > > > >
> > > > > > > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-
> > > > > > > > > > > 2.4.0/lib\
> > > > > > > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\
> > > > > > > > > > > -Xlinker\
> > > > > > > > > > > -export-
> > > > > > > > > > > dynamic
> > > > > > > > > > >
> > > > > > > > > > > The solution is compiling third party libraries
and
> > > > > > > > > > > MET
> > > > > > > > > > > with
> > > > > > > > > > > version
> > > > > > > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran
supports
> > > > > > > > > > > libgfortran.so.5,
> > > > > > > > > > > So the same problem will happen if MET is built
> > > > > > > > > > > with
> > > > > > > > > > > gcc/gfortran
> > > > > > > > > > > 6.x
> > > > > > > > > > > or gcc/gfortran 8.x.
> > > > > > > > > > >
> > > > > > > > > > > Cheers,
> > > > > > > > > > > Howard
> > > > > > > > > > >
> > > > > > > > > > > On Mon May 13 18:36:04 2019,
> > > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > wrote:
> > > > > > > > > > > > Attached is the config.log for NetCDf it shows
> > > > > > > > > > > > /usr/bin/gcc
> > > > > > > > > > > >
> > > > > > > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in
Red
> > > > > > > > > > > > Hat
> > > > > > > > > > > > version.
> > > > > > > > > > > >
> > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > regarding
> > > > > > > > > > > > MET
> > > > > > > > > > > > 8.1
> > > > > > > > > > > > Julie
> > > > > > > > > > > > Prestopnik
> > > > > > > > > > > >
> > > > > > > > > > > > Thank you. Unfortunately, that does not tell
me
> > > > > > > > > > > > if
> > > > > > > > > > > > the
> > > > > > > > > > > > libraries
> > > > > > > > > > > > and
> > > > > > > > > > > > the
> > > > > > > > > > > > MET code were built with the same version of
the
> > > > > > > > > > > > compiler.
> > > > > > > > > > > > I
> > > > > > > > > > > > also
> > > > > > > > > > > > do
> > > > > > > > > > > > not
> > > > > > > > > > > > see bufrlib in that list.
> > > > > > > > > > > >
> > > > > > > > > > > > Can you please tell me - were the libraries
and
> > > > > > > > > > > > the
> > > > > > > > > > > > MET
> > > > > > > > > > > > code
> > > > > > > > > > > > built
> > > > > > > > > > > > with the
> > > > > > > > > > > > same version of the compiler? I'm checking to
> > > > > > > > > > > > see
> > > > > > > > > > > > if,
> > > > > > > > > > > > for
> > > > > > > > > > > > example,
> > > > > > > > > > > > the
> > > > > > > > > > > > libraries were built with gcc-6.3.0 but the
MET
> > > > > > > > > > > > code
> > > > > > > > > > > > was
> > > > > > > > > > > > build
> > > > > > > > > > > > with
> > > > > > > > > > > > gcc-4.4.7.
> > > > > > > > > > > >
> > > > > > > > > > > > Thanks!
> > > > > > > > > > > >
> > > > > > > > > > > > Julie
> > > > > > > > > > > >
> > > > > > > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr.
> > > > > > > > > > > > Gregory,
> > > > > > > > > > > > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > > 7501.1
> > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > <URL:
> > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > You can see I am using those libraries for
MET
> > > > > > > > > > > > > 8.1:
> > > > > > > > > > > > >
> > > > > > > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > > > > > > linux-vdso.so.1 =>
> > > > > > > > > > > > > (0x00007ffd449a3000)
> > > > > > > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > > 2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > > > > > > libpthread.so.0 =>
> > > > > > > > > > > > > /lib64/libpthread.so.0
> > > > > > > > > > > > > (0x00002ab75e63b000)
> > > > > > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > > > > > (0x00002ab75e858000)
> > > > > > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > > > > > > libpng16.so.16 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > > > > > (0x00002ab75ec60000)
> > > > > > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > > > > > (0x00002ab75ee92000)
> > > > > > > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > > > > > (0x00002ab75f32f000)
> > > > > > > > > > > > > libnetcdf.so.11 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > > > > > (0x00002ab75f57c000)
> > > > > > > > > > > > > libgsl.so.19 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > > > > > > libgslcblas.so.0 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > > > > > > libjpeg.so.9 =>
> > > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > > > > > (0x00002ab75ff37000)
> > > > > > > > > > > > > libstdc++.so.6 =>
> > > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > > > > > > > > (0x00002ab760189000)
> > > > > > > > > > > > > libgcc_s.so.1 =>
> > > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > > > > > > (0x00002ab7602cb000)
> > > > > > > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > > > > > > (0x00002ab7602e0000)
> > > > > > > > > > > > > /lib64/ld-linux-x86-64.so.2
> > > > > > > > > > > > > (0x0000559353f4f000)
> > > > > > > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > > > > > (0x00002ab760675000)
> > > > > > > > > > > > > libhdf5.so.10 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > > > > > (0x00002ab760894000)
> > > > > > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > > > > > (0x00002ab760d6f000)
> > > > > > > > > > > > > [root at maury2 bin]#
> > > > > > > > > > > > >
> > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > > regarding
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > >
> > > > > > > > > > > > > Thank you, Greg. Can you please tell me -
were
> > > > > > > > > > > > > the
> > > > > > > > > > > > > libraries
> > > > > > > > > > > > > and
> > > > > > > > > > > > > the
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > code built with the same version of the
> > > > > > > > > > > > > compiler.
> > > > > > > > > > > > > I'm
> > > > > > > > > > > > > checking
> > > > > > > > > > > > > to
> > > > > > > > > > > > > see if,
> > > > > > > > > > > > > for example, the libraries were built with
gcc-
> > > > > > > > > > > > > 6.3.0
> > > > > > > > > > > > > but
> > > > > > > > > > > > > the
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > code
> > > > > > > > > > > > > was
> > > > > > > > > > > > > build with gcc-4.4.7.
> > > > > > > > > > > > >
> > > > > > > > > > > > > It sounds like we need the libraries and the
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > code
> > > > > > > > > > > > > to
> > > > > > > > > > > > > be
> > > > > > > > > > > > > built
> > > > > > > > > > > > > with the
> > > > > > > > > > > > > same version of the compiler, in this case.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Thanks for any information you can provide.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > >
> > > > > > > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr.
> > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > Code
> > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > <URL:
> > > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Find the logs attached.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Greg
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > MET
> > > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Could you please run the following:
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > which pb2nc
> > > > > > > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > and send me the output?
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Please also send your config.log and
make.log
> > > > > > > > > > > > > > file.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Thank you!
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr.
> > > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > > Code
> > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > <URL:
> > > > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > I used the buildscript. It should build
all
> > > > > > > > > > > > > > > of
> > > > > > > > > > > > > > > the
> > > > > > > > > > > > > > > external
> > > > > > > > > > > > > > > libraries,
> > > > > > > > > > > > > so
> > > > > > > > > > > > > > > I believe everything was built with the
> > > > > > > > > > > > > > > same
> > > > > > > > > > > > > > > compiler.
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Greg
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > > MET
> > > > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Hi Greg. Our developer suspects it may
be
> > > > > > > > > > > > > > > a
> > > > > > > > > > > > > > > mismatched
> > > > > > > > > > > > > compiler/library
> > > > > > > > > > > > > > > version. Was BUFRLIB installed with
the
> > > > > > > > > > > > > > > same
> > > > > > > > > > > > > > > compiler
> > > > > > > > > > > > > > > as
> > > > > > > > > > > > > > > MET?
> > > > > > > > > > > > > > > Also,
> > > > > > > > > > > > > > what
> > > > > > > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Thanks,
> > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie
> > > > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > > > > > > wrote:
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > Hi Greg. I am checking in with
another
> > > > > > > > > > > > > > > > developer
> > > > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > > > the
> > > > > > > > > > > > > > > > error
> > > > > > > > > > > > > > you
> > > > > > > > > > > > > > > > experienced. Thank you for your
> > > > > > > > > > > > > > > > patience.
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos,
> > > > > > > > > > > > > > > > Mr.
> > > > > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu>
wrote:
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> <URL:
> > > > > > > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat
4.4.7-
> > > > > > > > > > > > > > > >> 23)
> > > > > > > > > > > > > > > >> Copyright (C) 2010 Free Software
> > > > > > > > > > > > > > > >> Foundation,
> > > > > > > > > > > > > > > >> Inc.
> > > > > > > > > > > > > > > >> This is free software; see the source
> > > > > > > > > > > > > > > >> for
> > > > > > > > > > > > > > > >> copying
> > > > > > > > > > > > > > > >> conditions.
> > > > > > > > > > > > > > > >> There
> > > > > > > > > > > > > > is
> > > > > > > > > > > > > > > NO
> > > > > > > > > > > > > > > >> warranty; not even for
MERCHANTABILITY
> > > > > > > > > > > > > > > >> or
> > > > > > > > > > > > > > > >> FITNESS
> > > > > > > > > > > > > > > >> FOR
> > > > > > > > > > > > > > > >> A
> > > > > > > > > > > > > > > >> PARTICULAR
> > > > > > > > > > > > > > > >> PURPOSE.
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> Not all of the tests passed, please
see
> > > > > > > > > > > > > > > >> attachment.
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> Greg
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091]
> > > > > > > > > > > > > > > >> Help
> > > > > > > > > > > > > > > >> regarding
> > > > > > > > > > > > > > > >> MET
> > > > > > > > > > > > > > > >> 8.1
> > > > > > > > > > > > > > > >> Julie
> > > > > > > > > > > > > > > >> Prestopnik
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> Thank you for letting me know. I
will
> > > > > > > > > > > > > > > >> proceed
> > > > > > > > > > > > > > > >> with
> > > > > > > > > > > > > > > >> trying
> > > > > > > > > > > > > > > >> to
> > > > > > > > > > > > > > reproduce
> > > > > > > > > > > > > > > >> the
> > > > > > > > > > > > > > > >> problem using the gcc-6.3.0. I will
> > > > > > > > > > > > > > > >> follow
> > > > > > > > > > > > > > > >> up
> > > > > > > > > > > > > > > >> once
> > > > > > > > > > > > > > > >> I
> > > > > > > > > > > > > > > >> have
> > > > > > > > > > > > > > > >> more
> > > > > > > > > > > > > > > >> information.
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> Julie
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos,
> > > > > > > > > > > > > > > >> Mr.
> > > > > > > > > > > > > > > >> Gregory,
> > > > > > > > > > > > > > > >> Contractor,
> > > > > > > > > > > > > > > >> Code
> > > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > <URL:
> > > > > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > When I compiled MET 8.0 the last
time,
> > > > > > > > > > > > > > > >> > it
> > > > > > > > > > > > > > > >> > worked.
> > > > > > > > > > > > > > > >> > I
> > > > > > > > > > > > > > > >> > was
> > > > > > > > > > > > > > > >> > also
> > > > > > > > > > > > > > > >> > able
> > > > > > > > > > > > > to
> > > > > > > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > > > > > > >> > Password:
> > > > > > > > > > > > > > > >> > Last login: Thu May 9 17:38:30
2019
> > > > > > > > > > > > > > > >> > from
> > > > > > > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > *** Welcome to Cray eLogin Server
***
> > > > > > > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > > > > > > >> > 16 vcores, boot_memtotal:
257916mb
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > You are accessing a U.S. Government
> > > > > > > > > > > > > > > >> > (USG)
> > > > > > > > > > > > > > > >> > Information
> > > > > > > > > > > > > > > >> > System
> > > > > > > > > > > > > > > >> > (IS)
> > > > > > > > > > > > > > that
> > > > > > > > > > > > > > > >> is
> > > > > > > > > > > > > > > >> > provided for USG-authorized use
only.
> > > > > > > > > > > > > > > >> > By using this IS (which includes
any
> > > > > > > > > > > > > > > >> > device
> > > > > > > > > > > > > > > >> > attached
> > > > > > > > > > > > > > > >> > to
> > > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > > > >> > IS),
> > > > > > > > > > > > > > you
> > > > > > > > > > > > > > > >> > consent to the following
conditions:
> > > > > > > > > > > > > > > >> > -The USG routinely intercepts and
> > > > > > > > > > > > > > > >> > monitors
> > > > > > > > > > > > > > > >> > communications
> > > > > > > > > > > > > > > >> > on
> > > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > IS
> > > > > > > > > > > > > > > for
> > > > > > > > > > > > > > > >> > purposes including, but not limited
> > > > > > > > > > > > > > > >> > to,
> > > > > > > > > > > > > > > >> > penetration testing, COMSEC
> > > > > > > > > > > > > > > >> > monitoring,
> > > > > > > > > > > > > > > >> > network
> > > > > > > > > > > > > > > >> > operations
> > > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > > > defense,
> > > > > > > > > > > > > > > >> > personnel misconduct (PM), law
> > > > > > > > > > > > > > > >> > enforcement
> > > > > > > > > > > > > > > >> > (LE),
> > > > > > > > > > > > > > > >> > and counterintelligence (CI)
> > > > > > > > > > > > > > > >> > investigations.
> > > > > > > > > > > > > > > >> > -At any time, the USG may inspect
and
> > > > > > > > > > > > > > > >> > seize
> > > > > > > > > > > > > > > >> > data
> > > > > > > > > > > > > > > >> > stored
> > > > > > > > > > > > > > > >> > on
> > > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > IS.
> > > > > > > > > > > > > > > >> > -Communications using, or data
stored
> > > > > > > > > > > > > > > >> > on,
> > > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > > > >> > IS
> > > > > > > > > > > > > > > >> > are
> > > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > > >> > private,
> > > > > > > > > > > > > > are
> > > > > > > > > > > > > > > >> > subject to routine monitoring,
> > > > > > > > > > > > > > > >> > interception,
> > > > > > > > > > > > > > > >> > and search, and may be disclosed or
> > > > > > > > > > > > > > > >> > used
> > > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > > >> > any
> > > > > > > > > > > > > > > >> > USG-
> > > > > > > > > > > > > > > >> > authorized
> > > > > > > > > > > > > > > purpose.
> > > > > > > > > > > > > > > >> > -This IS includes security measures
> > > > > > > > > > > > > > > >> > (e.g.,
> > > > > > > > > > > > > > > >> > authentication
> > > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > access
> > > > > > > > > > > > > > > >> > controls) to protect USG interests
--
> > > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > > > > > > >> > -Notwithstanding the above, using
this
> > > > > > > > > > > > > > > >> > IS
> > > > > > > > > > > > > > > >> > does
> > > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > > >> > constitute
> > > > > > > > > > > > > > consent
> > > > > > > > > > > > > > > to
> > > > > > > > > > > > > > > >> > PM, LE or CI investigative
searching
> > > > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > > > >> > monitoring of the content of
> > > > > > > > > > > > > > > >> > privileged
> > > > > > > > > > > > > > > >> > communications,
> > > > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > > > >> > work
> > > > > > > > > > > > > > > product,
> > > > > > > > > > > > > > > >> > related to personal representation
or
> > > > > > > > > > > > > > > >> > services by attorneys,
> > > > > > > > > > > > > > > >> > psychotherapists,
> > > > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > > > >> > clergy,
> > > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > > > >> > their
> > > > > > > > > > > > > > > >> assistants.
> > > > > > > > > > > > > > > >> > Such communications and work
product
> > > > > > > > > > > > > > > >> > are
> > > > > > > > > > > > > > > >> > private and confidential. See User
> > > > > > > > > > > > > > > >> > Agreement
> > > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > > >> > details.
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor,
> > > > > > > > > > > > > > > >> > Code
> > > > > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu
#90091]
> > > > > > > > > > > > > > > >> > Help
> > > > > > > > > > > > > > > >> > regarding
> > > > > > > > > > > > > > > >> > MET
> > > > > > > > > > > > > > > >> > 8.1
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > >> > Prestopnik
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > Hi Gregory. I have not tested with
> > > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > > >> > 6.3.0
> > > > > > > > > > > > > > > >> > of
> > > > > > > > > > > > > > > >> > the
> > > > > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > > > compiler,
> > > > > > > > > > > > > > > >> but
> > > > > > > > > > > > > > > >> > rather only with lower versions
> > > > > > > > > > > > > > > >> > (specifically
> > > > > > > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > > > > > > >> > We
> > > > > > > > > > > > > > > >> > would,
> > > > > > > > > > > > > of
> > > > > > > > > > > > > > > >> course,
> > > > > > > > > > > > > > > >> > want our code to work with higher
> > > > > > > > > > > > > > > >> > versions
> > > > > > > > > > > > > > > >> > as
> > > > > > > > > > > > > > > >> > well.
> > > > > > > > > > > > > > > >> > I
> > > > > > > > > > > > > > > >> > have
> > > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > yet
> > > > > > > > > > > > > > > had
> > > > > > > > > > > > > > > >> an
> > > > > > > > > > > > > > > >> > opportunity to test with a higher
> > > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > > >> > like
> > > > > > > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > > > > > > >> > Do
> > > > > > > > > > > > > > > >> > you have
> > > > > > > > > > > > > > the
> > > > > > > > > > > > > > > >> > ability to compile MET using a
lesser
> > > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > > >> > of
> > > > > > > > > > > > > > > >> > the
> > > > > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > > > > >> > compiler
> > > > > > > > > > > > > to
> > > > > > > > > > > > > > > >> see if
> > > > > > > > > > > > > > > >> > that clears up the issues you are
> > > > > > > > > > > > > > > >> > experiencing?
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > Julie
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM
Ramos,
> > > > > > > > > > > > > > > >> > Mr.
> > > > > > > > > > > > > > > >> > Gregory,
> > > > > > > > > > > > > > > >> > Contractor,
> > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > <URL:
> > > > > > > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Greg
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22
AM
> > > > > > > > > > > > > > > >> > > To: Ramos, Mr. Gregory,
Contractor,
> > > > > > > > > > > > > > > >> > > Code
> > > > > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu
> > > > > > > > > > > > > > > >> > > #90091]
> > > > > > > > > > > > > > > >> > > Help
> > > > > > > > > > > > > > > >> > > regarding
> > > > > > > > > > > > > > > >> > > MET
> > > > > > > > > > > > > > > >> > > 8.1
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Hi Greg. Thank you for passing
> > > > > > > > > > > > > > > >> > > along
> > > > > > > > > > > > > > > >> > > your
> > > > > > > > > > > > > > > >> > > config.log
> > > > > > > > > > > > > > > >> > > file. I
> > > > > > > > > > > > > > see a
> > > > > > > > > > > > > > > >> > couple
> > > > > > > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Based on those errors, it looks
like
> > > > > > > > > > > > > > > >> > > you
> > > > > > > > > > > > > > > >> > > may
> > > > > > > > > > > > > > > >> > > not
> > > > > > > > > > > > > > > >> > > have
> > > > > > > > > > > > > > > >> > > flex
> > > > > > > > > > > > > > > >> > > and
> > > > > > > > > > > > > > bison
> > > > > > > > > > > > > > > >> > > installed. Please install those
and
> > > > > > > > > > > > > > > >> > > try
> > > > > > > > > > > > > > > >> > > running
> > > > > > > > > > > > > > > >> > > configure
> > > > > > > > > > > > > again.
> > > > > > > > > > > > > > > >> Please
> > > > > > > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Also, I just wanted to address
one
> > > > > > > > > > > > > > > >> > > other
> > > > > > > > > > > > > > > >> > > thing.
> > > > > > > > > > > > > > > >> > > In
> > > > > > > > > > > > > > > >> > > your
> > > > > > > > > > > > > original
> > > > > > > > > > > > > > > >> email
> > > > > > > > > > > > > > > >> > you
> > > > > > > > > > > > > > > >> > > listed the following as part of
your
> > > > > > > > > > > > > > > >> > > "MET
> > > > > > > > > > > > > > > >> > > Configuration
> > > > > > > > > > > > > settings":
> > > > > > > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7
> > > > > > > > > > > > > > > >> > > -lpthread
> > > > > > > > > > > > > > > >> > > -ldl
> > > > > > > > > > > > > > > >> > > -lutil
> > > > > > > > > > > > > > > >> > > -lm
> > > > > > > > > > > > > > -Xlinker
> > > > > > > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > However, in your config.log file
it
> > > > > > > > > > > > > > > >> > > looks
> > > > > > > > > > > > > > > >> > > like
> > > > > > > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > > > > > > >> actually
> > > > > > > > > > > > > > > >> > > set to be "-
> > > > > > > > > > > > > > > >> > > L/software/depot/anaconda-
> > > > > > > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > > > > > > -lpthread
> > > > > > > > > > > > > > > >> > -ldl
> > > > > > > > > > > > > > > >> > > -lutil -lm -Xlinker -export-
> > > > > > > > > > > > > > > >> > > dynamic",
> > > > > > > > > > > > > > > >> > > which
> > > > > > > > > > > > > > > >> > > is
> > > > > > > > > > > > > > > >> > > correct
> > > > > > > > > > > > > > > >> > > because
> > > > > > > > > > > > > you
> > > > > > > > > > > > > > > >> need
> > > > > > > > > > > > > > > >> > to
> > > > > > > > > > > > > > > >> > > have that -L part in there, so I
> > > > > > > > > > > > > > > >> > > just
> > > > > > > > > > > > > > > >> > > want
> > > > > > > > > > > > > > > >> > > to
> > > > > > > > > > > > > > > >> > > ensure
> > > > > > > > > > > > > > > >> > > that
> > > > > > > > > > > > > > > >> > > will
> > > > > > > > > > > > > > stay
> > > > > > > > > > > > > > > >> there
> > > > > > > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Thanks,
> > > > > > > > > > > > > > > >> > > Julie
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM
> > > > > > > > > > > > > > > >> > > Ramos,
> > > > > > > > > > > > > > > >> > > Mr.
> > > > > > > > > > > > > > > >> > > Gregory,
> > > > > > > > > > > > > > > >> > > Contractor,
> > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > <URL:
> > > > > > > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > Configure.log has no meaningful
> > > > > > > > > > > > > > > >> > > > info:
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
> > > > > > > > > > > > > > > >> > > > configure.log
> > > > > > > > > > > > > > > >> > > > -bash: [ramos at predict: command
not
> > > > > > > > > > > > > > > >> > > > found
> > > > > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03
PM
> > > > > > > > > > > > > > > >> > > > To: Ramos, Mr. Gregory,
> > > > > > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > > > > > >> > > > Code
> > > > > > > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu
> > > > > > > > > > > > > > > >> > > > #90091]
> > > > > > > > > > > > > > > >> > > > Help
> > > > > > > > > > > > > > > >> > > > regarding
> > > > > > > > > > > > > > > >> > > > MET
> > > > > > > > > > > > > > > >> > > > 8.1
> > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > I'll go ahead and assign this
> > > > > > > > > > > > > > > >> > > > ticket
> > > > > > > > > > > > > > > >> > > > to
> > > > > > > > > > > > > > > >> > > > Julie,
> > > > > > > > > > > > > > > >> > > > and
> > > > > > > > > > > > > > > >> > > > she
> > > > > > > > > > > > > > > >> > > > should
> > > > > > > > > > > > > be
> > > > > > > > > > > > > > > >> > writing
> > > > > > > > > > > > > > > >> > > > you back in the next couple of
> > > > > > > > > > > > > > > >> > > > days.
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > I do know she'll want to see
both
> > > > > > > > > > > > > > > >> > > > the
> > > > > > > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > > > > > > >> > > > file you
> > > > > > > > > > > > > > > >> > generated
> > > > > > > > > > > > > > > >> > > as
> > > > > > > > > > > > > > > >> > > > well as the "config.log" file
from
> > > > > > > > > > > > > > > >> > > > that
> > > > > > > > > > > > > > > >> > > > same
> > > > > > > > > > > > > > > >> > > > directory.
> > > > > > > > > > > > > > > >> > > > So
> > > > > > > > > > > > > > please
> > > > > > > > > > > > > > > >> send
> > > > > > > > > > > > > > > >> > > > those along when you get a
chance.
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > > > > > > >> > > > John
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM
> > > > > > > > > > > > > > > >> > > > Ramos,
> > > > > > > > > > > > > > > >> > > > Mr.
> > > > > > > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > > > > >> > > > via RT <met_help at ucar.edu>
wrote:
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019:
> > > > > > > > > > > > > > > >> > > > > Request
> > > > > > > > > > > > > > > >> > > > > 90091
> > > > > > > > > > > > > > > >> > > > > was
> > > > > > > > > > > > > > > >> > > > > acted
> > > > > > > > > > > > > > > >> > > > > upon.
> > > > > > > > > > > > > > > >> > > > > Transaction: Ticket created
by
> > > > > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > > > > > > >> > > > > Subject: Help regarding MET
8.1
> > > > > > > > > > > > > > > >> > > > > Julie
> > > > > > > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > > > > > > >> > > > > Requestors:
> > > > > > > > > > > > > > > >> > > > >
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > > > Julie helped me compiled 8.0
> > > > > > > > > > > > > > > >> > > > > using
> > > > > > > > > > > > > > > >> > > > > gcc
> > > > > > > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > > > > > > >> > > > > and
> > > > > > > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > > > > > > 2.4.0.
> > > > > > > > > > > > > > > >> The
> > > > > > > > > > > > > > > >> > > user
> > > > > > > > > > > > > > > >> > > > > asked for 8.1. I took notes
last
> > > > > > > > > > > > > > > >> > > > > time,
> > > > > > > > > > > > > > > >> > > > > but
> > > > > > > > > > > > > > > >> > > > > running
> > > > > > > > > > > > > > > >> > > > > into
> > > > > > > > > > > > > > > problems:
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > > MET_GSL=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > MET_PYTHON_CC=-
> > > > > > > > > > > > > > > >> > I/software/depot/anaconda-
> > > > > > > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g
-fwrapv
> > > > > > > > > > > > > > > >> > > > > -O3
> > > > > > > > > > > > > > > >> > > > > -Wall
> > > > > > > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > > MET_HDF=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_HDFEOS=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_NETCDF=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > MET_CAIROLIB=/software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > > >> > > > > export MET_PYTHON_LD=-
lpython2.7
> > > > > > > > > > > > > > > >> > > > > -lpthread
> > > > > > > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > > > > > > >> > > > > -lm
> > > > > > > > > > > > > > > >> -Xlinker
> > > > > > > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_GRIB2C=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_SUBDIR=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > > >> > > > > cd /software/depot/met-
8.1/met-
> > > > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > > > >> > > > > ./configure
> > > > > > > > > > > > > > > >> > > > > --prefix=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > > > >> --enable-grib2
> > > > > > > > > > > > > > > >> > > > > --enable-modis --enable-
> > > > > > > > > > > > > > > >> > > > > mode_graphics
> > > > > > > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > > > > > > >> > > configure.log
> > > > > > > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > > > > > > >> > > > > configure returned with non-
zero
> > > > > > > > > > > > > > > >> > > > > (127)
> > > > > > > > > > > > > > > >> > > > > status
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > >
> >
> >
> >
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Ramos, Mr. Gregory, Contractor, Code 7501.1
Time: Sat May 25 20:58:24 2019
I realized that I was not cleaning up the old versions built with the
other compilers. Please see attached make_test.log.
Greg
-----Original Message-----
From: Howard Soh via RT [mailto:met_help at ucar.edu]
Sent: Thursday, May 23, 2019 5:25 PM
To: Ramos, Mr. Gregory, Contractor, Code 7501.1
Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
Prestopnik
I'm sorry for the confusion.
I thought we have two solutions when I took over this ticket from
Julie. We tried the first solution and found it did not work. You
compiled with GNU 6.3.0 but I compiled it with both GNU 6.3.0 and
7.3.0. And the same runtime error with GNU 7.3.0. I won't pursue the
first solution because it's beyond my responsibility.
The solution 2 was actually a suggestion to setup the python
environment with matching compiler for MET 8.1.
The next release will support GNU 6.3.0 or higher.
MET can not support the python environment which requires library
files from GNU 7.x.
I recommend you to create a new ticket for further issue. I would like
to close this ticket.
Cheers,
Howard
On Thu May 23 17:26:50 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> This is the statement I don't understand:
>
> Solution 1: Compile MET and third party libraries with GNU 7.x.
> It turned out MET 8.1 is not ready for GNU 6.3.0 or higher
>
> You say it doesn't work for 6.3.0 and higher, but suggest 7.x. I
don't
> know what you are says. I tried MET 8.1 with 7.x and every time I
> compile I rebuilt the external libraries.
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 23, 2019 1:12 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> Known facts:
> - GNU 4.x, 5.x, and 6.x compiler work with libgfortran.so.3, but
they
> are not work with libgfortran.so.4.
> - libgfortran.so.4 exists at the PYTHON configuration
> (/software/depot/anaconda-2.4.0/lib)
> - MET 8.1 was compiled with GNU 4.4.7 but linked with
libgfortran.so.4
> which does not work with GNU 4.4.7. ==> That's why "make test"
failed
> with pb2nc.
>
>
> MET is expecting only libpython2.7.a (and three dependent libraries)
> to enable python, but /software/depot/anaconda-2.4.0/lib has more
> library files. The extra library files at /software/depot/anaconda-
> 2.4.0/lib cause the runtime error with pb2nc and other MET tools.
> Note: libpython2.7.a requires three more library files (need -ldl
> -lutil -lpthread at link time).
>
> The anaconda is collection of python packages and many packages
> requires binary (library) files. For example, cfunits package
requires
> Unidata udunits library. I'm not sure which python package but there
> is at least one python package which requires libgfortran.so.4.
>
>
> Two possible solutions:
>
> Solution 1: Compile MET and third party libraries with GNU 7.x.
> It turned out MET 8.1 is not ready for GNU 6.3.0 or higher
>
> Solution 2: Remove libgfortan.so.4 from build/run environment and
use
> libgfortan.s
>
> If I were you, I would do this way:
> 1. Copy /software/depot/anaconda-2.4.0 to /software/depot/anaconda-
> 2.4.0_MET
> 2. Delete all library files except libpython* at
> /software/depot/anaconda-2.4.0_MET/lib
> 3. Rebuild third party libraries and MET with GCC 4.4.7 with
> /software/depot/anaconda-2.4.0_MET instead of
> /software/depot/anaconda-2.4.0
> 4. Run MET with /software/depot/anaconda-2.4.0_MET/lib at
> LD_LIBRARY_PATH.
> 5. If python under MET fails, add missing library to
> /software/depot/anaconda-2.4.0_MET/lib except libgfortran.so.4
>
> Cheers,
> Howard
>
>
>
> On Thu May 23 09:47:54 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > Even gcc 4.4.7 had problems. See attachment.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, May 23, 2019 7:23 AM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > No, they are not reliable. ascii2nc did not process the arguments.
It
> > worked without argument which displays the usage (or help)
message.
> > This happens to other executables.
> >
> > Cheers,
> > Howard
> >
> > On Wed May 22 19:05:44 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > That's fine. If the make test fails, doesn't that mean the
> > > executables
> > > created aren't reliable?
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Wednesday, May 22, 2019 5:38 PM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > I'm sorry that MET code is not ready for newer GNU compiler. The
> > > error
> > > with "make test" was caused by changed APIs from newer gnu
> > > compiler.
> > > I
> > > fixed it for ascii2nc locally with updating two files. I tried
few
> > > MET
> > > tools and found more than 10 files should be updated.
> > >
> > > I think it's beyond helpdesk work. It's better to support the
newer
> > > version GNU compiler with next release.
> > >
> > > Cheers,
> > > Howard
> > >
> > >
> > > On Wed May 22 12:47:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > Attached is the Makefile, just in case.
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Wednesday, May 22, 2019 11:34 AM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > > Prestopnik
> > > >
> > > > Would you run the same command manually and sen me the output?
> > > >
> > > > cd /software/depot/met-8.1a/met-8.1a/scripts
> > > > ../src/tools/other/ascii2nc/ascii2nc
> > > > ../data/sample_obs/ascii/sample_ascii_obs.txt
./sample_ascii.nc
> > > > -v
> > > > 2
> > > > (NOTE: the same dcommand but one line instead of multiple
lines)
> > > >
> > > > If the command works, would you send me Makefile at the
current
> > > > directory.
> > > > If not working, please run following commands and send me
> > > > ascii2nc_test.log.
> > > >
> > > > ../src/tools/other/ascii2nc/ascii2nc
> > > > ../data/sample_obs/ascii/sample_ascii_obs.txt
./sample_ascii.nc
> > > > -v
> > > > 5
> > > > -log ascii2nc_test.log
> > > >
> > > > ldd ../src/tools/other/ascii2nc/ascii2nc >> ascii2nc_test.log
> > > >
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > >
> > > > On Wed May 22 11:26:02 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > Attached find my make.log and make_test.log
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Wednesday, May 22, 2019 7:11 AM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > The runntime NetCDF library is decided by LD_LIBRARY_PATH.
> > > > > LD_LIBRARY_PATH can be changed by module loading or by user
> > > > > configurations. If the problem happens with NetCDF, would
you
> > > > > ask
> > > > > them
> > > > > to run this command and check which NetCDF library is
loaded?
> > > > >
> > > > > ldd bin/<MET_tool_name> | grep netcdf
> > > > > ldd bin/<MET_tool_name> | grep hdf
> > > > >
> > > > > for example,
> > > > > ldd bin/pb2nc | grep netcdf
> > > > > ldd bin/pb2nc | grep hdf
> > > > > ldd bin/grid_stat | grep netcdf
> > > > > ldd bin/grid_stat | grep hdf
> > > > >
> > > > > Note: There are dependency between NetCDF4 and HDF5.
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > > On Tue May 21 18:57:59 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > OK, we have several people who are using the 8.1 version I
> > > > > > built.
> > > > > > We
> > > > > > use a central location:
> > > > > >
> > > > > > /software/depot
> > > > > >
> > > > > > To house all of our software. To be clear, the first build
> > > > > > went
> > > > > > OK,
> > > > > > it
> > > > > > was 'make test' that failed. So the users are using that,
but
> > > > > > someone
> > > > > > ran into an error today and they asked me about NetCDF. I
> > > > > > think
> > > > > > it
> > > > > > was
> > > > > > their setup. The same build was used on two different
> > > > > > machines,
> > > > > > one
> > > > > > had an error, one didn't.
> > > > > >
> > > > > > Greg
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Tuesday, May 21, 2019 5:50 PM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > No, external libraries are not changed.
> > > > > >
> > > > > > Personally, I'm using newer NetCDF library (4.6.x instead
of
> > > > > > 4.4.1.1).
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > > On Tue May 21 18:39:25 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > No, that is not what I am asking. Every time I build, I
use
> > > > > > > your
> > > > > > > script which builds everything.
> > > > > > >
> > > > > > > What I am asking is, did the versions of the external
> > > > > > > libraries
> > > > > > > change?
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Tuesday, May 21, 2019 5:34 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > Yes, the third party libraries should be compiled with
> > > > > > > newer
> > > > > > > version.
> > > > > > >
> > > > > > > The compile error with gnu 7.3.0 happens with gnu 6.3.0,
> > > > > > > too.
> > > > > > > The fix/patch is not ready officially. One file has to
be
> > > > > > > corrected
> > > > > > > to support newer version gnu compiler. Would you replace
> > > > > > > data_line.cc
> > > > > > > with attached file or modify it manually?
> > > > > > >
> > > > > > > Filename:
> > > > > > > met-8.1/src/basic/vx_util/data_line.cc
> > > > > > >
> > > > > > > line 202:
> > > > > > >
> > > > > > > out << prefix << sstream << Line.substr(j) << "\"\n";
==>
> > > > > > > out << prefix << sstream.str() << Line.substr(j) <<
"\"\n";
> > > > > > >
> > > > > > > line 218:
> > > > > > >
> > > > > > > out << prefix << sstream << Line.substr(j) << "\"\n";
==>
> > > > > > > out << prefix << sstream.str() << Line.substr(j) <<
"\"\n";
> > > > > > >
> > > > > > > Cheers,
> > > > > > > Howard
> > > > > > >
> > > > > > > On Tue May 21 18:21:25 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > wrote:
> > > > > > > > Did new external libraries need to be built with 8.1?
> > > > > > > >
> > > > > > > > Greg
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > Sent: Thursday, May 16, 2019 4:01 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > No new tools but many enhancements.
> > > > > > > >
> > > > > > > > It's available at
> > > > > > > > https://dtcenter.org/community-code/model-evaluation-
> > > > > > > > tools-
> > > > > > > > met/met-
> > > > > > > > version-8-1
> > > > > > > >
> > > > > > > > Cheers,
> > > > > > > > Howard
> > > > > > > >
> > > > > > > > On Thu May 16 16:46:32 2019,
> > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > wrote:
> > > > > > > > > Maybe you can answer one question while I try to
> > > > > > > > > reinstall
> > > > > > > > > everything. What features does 8.1 provide over 8.0?
> > > > > > > > >
> > > > > > > > > Greg
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > Would try this command at /software/depot/met-
8.1/met-
> > > > > > > > > 8.1/scripts
> > > > > > > > > directory?
> > > > > > > > >
> > > > > > > > > 1. check the environtment variable LD_LIBRARY_PATH:
> > > > > > > > > echo $LD_LIBRARY_PATH
> > > > > > > > >
> > > > > > > > > 2. Save LD_LIBRARY_PATH
> > > > > > > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > > > > > > OR
> > > > > > > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > > > > > > >
> > > > > > > > > 3. Set LD_LIBRARY_PATH without
> > > > > > > > > /software/depot/anaconda-
> > > > > > > > > 2.4.0/lib
> > > > > > > > >
> > > > > > > > > 4. Check which libgfortran.so at
/software/depot/met-
> > > > > > > > > 8.1/met-
> > > > > > > > > 8.1/scripts directory.
> > > > > > > > >
> > > > > > > > > ldd ../src/tools/other/pb2nc/pb2nc | grep
libgfortran
> > > > > > > > > OR
> > > > > > > > > ldd
> > > > > > > > > ../bin/pb2nc | grep libgfortran
> > > > > > > > >
> > > > > > > > > 5. Check libgfortran version (should be
> > > > > > > > > libgfortran.so.3,
> > > > > > > > > not
> > > > > > > > > so.4)
> > > > > > > > >
> > > > > > > > > 6. Run the failed command manually at
> > > > > > > > > /software/depot/met-
> > > > > > > > > 8.1/met-
> > > > > > > > > 8.1/scripts directory if libgfortran.so.3.
> > > > > > > > >
> > > > > > > > > ../src/tools/other/pb2nc/pb2nc \
> > > > > > > > >
> > > > > > > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > > > > > > \
> > > > > > > > > ../out/pb2nc/sample_pb.nc \
> > > > > > > > > config/PB2NCConfig_G212 \
> > > > > > > > > -v 2
> > > > > > > > >
> > > > > > > > > 7. Change back LD_LIBRARY_PATH
> > > > > > > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > > > > > > OR
> > > > > > > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > > > > > > >
> > > > > > > > > Cheers,
> > > > > > > > > Howard
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > On Thu May 16 15:28:16 2019,
> > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > wrote:
> > > > > > > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-
with-
> > > > > > > > > > grib2-
> > > > > > > > > > support
> > > > > > > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > > > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > > > > > > libpython2.7.so.1.0 => /software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib/libpython2.7.so.1.0 (0x00007f7f19f4e000)
> > > > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > > > (0x0000003453800000)
> > > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > > (0x0000003453400000)
> > > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > > (0x0000003455800000)
> > > > > > > > > > libpng16.so.16 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > > (0x00007f7f19d0c000)
> > > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > > (0x00007f7f19af4000)
> > > > > > > > > > libm.so.6 => /lib64/libm.so.6
(0x0000003453c00000)
> > > > > > > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > > (0x00007f7f198a6000)
> > > > > > > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > > (0x00007f7f19567000)
> > > > > > > > > > libgsl.so.19 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > > (0x00007f7f19125000)
> > > > > > > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > > (0x00007f7f18eeb000)
> > > > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > > (0x00007f7f18c99000)
> > > > > > > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > > > > > (0x00007f7f18b58000)
> > > > > > > > > > libgcc_s.so.1 =>
> > > > > > > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > > > > > > (0x00007f7f18b42000)
> > > > > > > > > > libc.so.6 => /lib64/libc.so.6
(0x0000003453000000)
> > > > > > > > > > /lib64/ld-linux-x86-64.so.2 (0x000055c024276000)
> > > > > > > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > > (0x00007f7f18922000)
> > > > > > > > > > libhdf5.so.10 => /software/depot/met-
> > > > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > > (0x00007f7f18447000)
> > > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > > (0x0000003454400000)
> > > > > > > > > > [ramos at lorenz bin]$
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Howard Soh via RT
[mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > MET is expecting "libpython2.7.so" to enable
python
> > > > > > > > > > support.
> > > > > > > > > >
> > > > > > > > > > A log message shows the python was not enabled. Is
> > > > > > > > > > python
> > > > > > > > > > supporting is critical?
> > > > > > > > > >
> > > > > > > > > > ./configure --prefix=/software/depot/met-8.1/met-
8.1
> > > > > > > > > > --enable-grib2 --enable-modis --enable-
mode_graphics
> > > > > > > > > > --enable-lidar2nc > configure.log 2>&1
> > > > > > > > > >
> > > > > > > > > > If not, you can build/run MET 8.1 with
gcc/gfortran
> > > > > > > > > > 4.4.7.
> > > > > > > > > > 1. Make sure python is not enabled
> > > > > > > > > > no "--enable-python" option for ./configure
> > > > > > > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > > > > > > 3. Remove "/software/depot/anaconda-2.4.0/lib"
> > > > > > > > > > from
> > > > > > > > > > LD_LIBRARY_PATH at the build time and runtime
both.
> > > > > > > > > >
> > > > > > > > > > Cheers,
> > > > > > > > > > Howard
> > > > > > > > > >
> > > > > > > > > > On Thu May 16 14:17:40 2019,
> > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > wrote:
> > > > > > > > > > > I was able to compile Met 8.0 on our Cray with:
> > > > > > > > > > >
> > > > > > > > > > > ramos at leo1:~> gcc --version
> > > > > > > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.) Copyright
(C)
> > > > > > > > > > > 2017
> > > > > > > > > > > Free
> > > > > > > > > > > Software Foundation, Inc.
> > > > > > > > > > > This is free software; see the source for
copying
> > > > > > > > > > > conditions.
> > > > > > > > > > > There
> > > > > > > > > > > is NO
> > > > > > > > > > > warranty; not even for MERCHANTABILITY or
FITNESS
> > > > > > > > > > > FOR
> > > > > > > > > > > A
> > > > > > > > > > > PARTICULAR PURPOSE.
> > > > > > > > > > >
> > > > > > > > > > > ramos at leo1:~> gfortran --version GNU Fortran
(GCC)
> > > > > > > > > > > 7.3.0
> > > > > > > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free
> > > > > > > > > > > Software
> > > > > > > > > > > Foundation, Inc.
> > > > > > > > > > > This is free software; see the source for
copying
> > > > > > > > > > > conditions.
> > > > > > > > > > > There
> > > > > > > > > > > is NO
> > > > > > > > > > > warranty; not even for MERCHANTABILITY or
FITNESS
> > > > > > > > > > > FOR
> > > > > > > > > > > A
> > > > > > > > > > > PARTICULAR PURPOSE.
> > > > > > > > > > >
> > > > > > > > > > > ramos at leo1:~>
> > > > > > > > > > >
> > > > > > > > > > > We don't have that version on our Red Hat
systems.
> > > > > > > > > > > Met
> > > > > > > > > > > 8.0
> > > > > > > > > > > worked on RH, but 8.1 failed on the 'make test'.
> > > > > > > > > > > The
> > > > > > > > > > > user
> > > > > > > > > > > says
> > > > > > > > > > > she is fine with the executables so far. I will
> > > > > > > > > > > have
> > > > > > > > > > > to
> > > > > > > > > > > build
> > > > > > > > > > > a
> > > > > > > > > > > gfortran 7.x version.
> > > > > > > > > > >
> > > > > > > > > > > Greg
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > From: Howard Soh via RT
[mailto:met_help at ucar.edu]
> > > > > > > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding
> > > > > > > > > > > MET
> > > > > > > > > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > Prestopnik
> > > > > > > > > > >
> > > > > > > > > > > Hello,
> > > > > > > > > > >
> > > > > > > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > > > > > > >
> > > > > > > > > > > The problem was caused by the path for python
> > > > > > > > > > > library
> > > > > > > > > > > (/software/depot/anaconda-2.4.0/lib).
> > > > > > > > > > > libgfortran.so.4
> > > > > > > > > > > exists
> > > > > > > > > > > there
> > > > > > > > > > > from the ldd output. It was used on building
MET.
> > > > > > > > > > > MET
> > > > > > > > > > > was
> > > > > > > > > > > compiled
> > > > > > > > > > > with gcc 4.4.7 which supports only
> > > > > > > > > > > libgfortran.so.3,
> > > > > > > > > > > and
> > > > > > > > > > > linked
> > > > > > > > > > > with
> > > > > > > > > > > libgfortran.so.4 because of MET_PYTHON_LD
> > > > > > > > > > > configuration.
> > > > > > > > > > > Some
> > > > > > > > > > > libraries do not support the backward
> > > > > > > > > > > compatibility.
> > > > > > > > > > > libgfortran.so
> > > > > > > > > > > is
> > > > > > > > > > > one of them. In this case, the compiler version
and
> > > > > > > > > > > library
> > > > > > > > > > > version
> > > > > > > > > > > should match.
> > > > > > > > > > >
> > > > > > > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-
8.1/met-
> > > > > > > > > > > 8.1/bin/pb2nc
> > > > > > > > > > > |grep
> > > > > > > > > > > gfortran
> > > > > > > > > > > libgfortran.so.4 =>
/software/depot/anaconda-
> > > > > > > > > > > 2.4.0/lib/libgfortran.so.4 (0x00007fa8eeec7000)
> > > > > > > > > > >
> > > > > > > > > > > export MET_PYTHON_LD=-L/software/depot/anaconda-
> > > > > > > > > > > 2.4.0/lib\
> > > > > > > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\
> > > > > > > > > > > -Xlinker\
> > > > > > > > > > > -export-
> > > > > > > > > > > dynamic
> > > > > > > > > > >
> > > > > > > > > > > The solution is compiling third party libraries
and
> > > > > > > > > > > MET
> > > > > > > > > > > with
> > > > > > > > > > > version
> > > > > > > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran
supports
> > > > > > > > > > > libgfortran.so.5,
> > > > > > > > > > > So the same problem will happen if MET is built
> > > > > > > > > > > with
> > > > > > > > > > > gcc/gfortran
> > > > > > > > > > > 6.x
> > > > > > > > > > > or gcc/gfortran 8.x.
> > > > > > > > > > >
> > > > > > > > > > > Cheers,
> > > > > > > > > > > Howard
> > > > > > > > > > >
> > > > > > > > > > > On Mon May 13 18:36:04 2019,
> > > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > wrote:
> > > > > > > > > > > > Attached is the config.log for NetCDf it shows
> > > > > > > > > > > > /usr/bin/gcc
> > > > > > > > > > > >
> > > > > > > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in
Red
> > > > > > > > > > > > Hat
> > > > > > > > > > > > version.
> > > > > > > > > > > >
> > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > regarding
> > > > > > > > > > > > MET
> > > > > > > > > > > > 8.1
> > > > > > > > > > > > Julie
> > > > > > > > > > > > Prestopnik
> > > > > > > > > > > >
> > > > > > > > > > > > Thank you. Unfortunately, that does not tell
me
> > > > > > > > > > > > if
> > > > > > > > > > > > the
> > > > > > > > > > > > libraries
> > > > > > > > > > > > and
> > > > > > > > > > > > the
> > > > > > > > > > > > MET code were built with the same version of
the
> > > > > > > > > > > > compiler.
> > > > > > > > > > > > I
> > > > > > > > > > > > also
> > > > > > > > > > > > do
> > > > > > > > > > > > not
> > > > > > > > > > > > see bufrlib in that list.
> > > > > > > > > > > >
> > > > > > > > > > > > Can you please tell me - were the libraries
and
> > > > > > > > > > > > the
> > > > > > > > > > > > MET
> > > > > > > > > > > > code
> > > > > > > > > > > > built
> > > > > > > > > > > > with the
> > > > > > > > > > > > same version of the compiler? I'm checking to
> > > > > > > > > > > > see
> > > > > > > > > > > > if,
> > > > > > > > > > > > for
> > > > > > > > > > > > example,
> > > > > > > > > > > > the
> > > > > > > > > > > > libraries were built with gcc-6.3.0 but the
MET
> > > > > > > > > > > > code
> > > > > > > > > > > > was
> > > > > > > > > > > > build
> > > > > > > > > > > > with
> > > > > > > > > > > > gcc-4.4.7.
> > > > > > > > > > > >
> > > > > > > > > > > > Thanks!
> > > > > > > > > > > >
> > > > > > > > > > > > Julie
> > > > > > > > > > > >
> > > > > > > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr.
> > > > > > > > > > > > Gregory,
> > > > > > > > > > > > Contractor,
> > > > > > > > > > > > Code
> > > > > > > > > > > > 7501.1
> > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > <URL:
> > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > You can see I am using those libraries for
MET
> > > > > > > > > > > > > 8.1:
> > > > > > > > > > > > >
> > > > > > > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > > > > > > linux-vdso.so.1 =>
> > > > > > > > > > > > > (0x00007ffd449a3000)
> > > > > > > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > > 2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > > > > > > libpthread.so.0 =>
> > > > > > > > > > > > > /lib64/libpthread.so.0
> > > > > > > > > > > > > (0x00002ab75e63b000)
> > > > > > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > > > > > (0x00002ab75e858000)
> > > > > > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > > > > > > libpng16.so.16 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > > > > > (0x00002ab75ec60000)
> > > > > > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > > > > > (0x00002ab75ee92000)
> > > > > > > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > > > > > (0x00002ab75f32f000)
> > > > > > > > > > > > > libnetcdf.so.11 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > > > > > (0x00002ab75f57c000)
> > > > > > > > > > > > > libgsl.so.19 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > > > > > > libgslcblas.so.0 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > > > > > > libjpeg.so.9 =>
> > > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > > > > > (0x00002ab75ff37000)
> > > > > > > > > > > > > libstdc++.so.6 =>
> > > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > > > > > > > > (0x00002ab760189000)
> > > > > > > > > > > > > libgcc_s.so.1 =>
> > > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > > > > > > (0x00002ab7602cb000)
> > > > > > > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > > > > > > (0x00002ab7602e0000)
> > > > > > > > > > > > > /lib64/ld-linux-x86-64.so.2
> > > > > > > > > > > > > (0x0000559353f4f000)
> > > > > > > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > > > > > (0x00002ab760675000)
> > > > > > > > > > > > > libhdf5.so.10 =>
> > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > > > > > (0x00002ab760894000)
> > > > > > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > > > > > (0x00002ab760d6f000)
> > > > > > > > > > > > > [root at maury2 bin]#
> > > > > > > > > > > > >
> > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > > regarding
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > >
> > > > > > > > > > > > > Thank you, Greg. Can you please tell me -
were
> > > > > > > > > > > > > the
> > > > > > > > > > > > > libraries
> > > > > > > > > > > > > and
> > > > > > > > > > > > > the
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > code built with the same version of the
> > > > > > > > > > > > > compiler.
> > > > > > > > > > > > > I'm
> > > > > > > > > > > > > checking
> > > > > > > > > > > > > to
> > > > > > > > > > > > > see if,
> > > > > > > > > > > > > for example, the libraries were built with
gcc-
> > > > > > > > > > > > > 6.3.0
> > > > > > > > > > > > > but
> > > > > > > > > > > > > the
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > code
> > > > > > > > > > > > > was
> > > > > > > > > > > > > build with gcc-4.4.7.
> > > > > > > > > > > > >
> > > > > > > > > > > > > It sounds like we need the libraries and the
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > code
> > > > > > > > > > > > > to
> > > > > > > > > > > > > be
> > > > > > > > > > > > > built
> > > > > > > > > > > > > with the
> > > > > > > > > > > > > same version of the compiler, in this case.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Thanks for any information you can provide.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > >
> > > > > > > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr.
> > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > Code
> > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > <URL:
> > > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Find the logs attached.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Greg
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > MET
> > > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Could you please run the following:
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > which pb2nc
> > > > > > > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > and send me the output?
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Please also send your config.log and
make.log
> > > > > > > > > > > > > > file.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Thank you!
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos, Mr.
> > > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > > Code
> > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > <URL:
> > > > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > I used the buildscript. It should build
all
> > > > > > > > > > > > > > > of
> > > > > > > > > > > > > > > the
> > > > > > > > > > > > > > > external
> > > > > > > > > > > > > > > libraries,
> > > > > > > > > > > > > so
> > > > > > > > > > > > > > > I believe everything was built with the
> > > > > > > > > > > > > > > same
> > > > > > > > > > > > > > > compiler.
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Greg
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > > MET
> > > > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Hi Greg. Our developer suspects it may
be
> > > > > > > > > > > > > > > a
> > > > > > > > > > > > > > > mismatched
> > > > > > > > > > > > > compiler/library
> > > > > > > > > > > > > > > version. Was BUFRLIB installed with
the
> > > > > > > > > > > > > > > same
> > > > > > > > > > > > > > > compiler
> > > > > > > > > > > > > > > as
> > > > > > > > > > > > > > > MET?
> > > > > > > > > > > > > > > Also,
> > > > > > > > > > > > > > what
> > > > > > > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Thanks,
> > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie
> > > > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > > > > > > wrote:
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > Hi Greg. I am checking in with
another
> > > > > > > > > > > > > > > > developer
> > > > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > > > the
> > > > > > > > > > > > > > > > error
> > > > > > > > > > > > > > you
> > > > > > > > > > > > > > > > experienced. Thank you for your
> > > > > > > > > > > > > > > > patience.
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM Ramos,
> > > > > > > > > > > > > > > > Mr.
> > > > > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu>
wrote:
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> <URL:
> > > > > > > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> I was able to build on Red Hat using:
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat
4.4.7-
> > > > > > > > > > > > > > > >> 23)
> > > > > > > > > > > > > > > >> Copyright (C) 2010 Free Software
> > > > > > > > > > > > > > > >> Foundation,
> > > > > > > > > > > > > > > >> Inc.
> > > > > > > > > > > > > > > >> This is free software; see the source
> > > > > > > > > > > > > > > >> for
> > > > > > > > > > > > > > > >> copying
> > > > > > > > > > > > > > > >> conditions.
> > > > > > > > > > > > > > > >> There
> > > > > > > > > > > > > > is
> > > > > > > > > > > > > > > NO
> > > > > > > > > > > > > > > >> warranty; not even for
MERCHANTABILITY
> > > > > > > > > > > > > > > >> or
> > > > > > > > > > > > > > > >> FITNESS
> > > > > > > > > > > > > > > >> FOR
> > > > > > > > > > > > > > > >> A
> > > > > > > > > > > > > > > >> PARTICULAR
> > > > > > > > > > > > > > > >> PURPOSE.
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> Not all of the tests passed, please
see
> > > > > > > > > > > > > > > >> attachment.
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> Greg
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu #90091]
> > > > > > > > > > > > > > > >> Help
> > > > > > > > > > > > > > > >> regarding
> > > > > > > > > > > > > > > >> MET
> > > > > > > > > > > > > > > >> 8.1
> > > > > > > > > > > > > > > >> Julie
> > > > > > > > > > > > > > > >> Prestopnik
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> Thank you for letting me know. I
will
> > > > > > > > > > > > > > > >> proceed
> > > > > > > > > > > > > > > >> with
> > > > > > > > > > > > > > > >> trying
> > > > > > > > > > > > > > > >> to
> > > > > > > > > > > > > > reproduce
> > > > > > > > > > > > > > > >> the
> > > > > > > > > > > > > > > >> problem using the gcc-6.3.0. I will
> > > > > > > > > > > > > > > >> follow
> > > > > > > > > > > > > > > >> up
> > > > > > > > > > > > > > > >> once
> > > > > > > > > > > > > > > >> I
> > > > > > > > > > > > > > > >> have
> > > > > > > > > > > > > > > >> more
> > > > > > > > > > > > > > > >> information.
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> Julie
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM Ramos,
> > > > > > > > > > > > > > > >> Mr.
> > > > > > > > > > > > > > > >> Gregory,
> > > > > > > > > > > > > > > >> Contractor,
> > > > > > > > > > > > > > > >> Code
> > > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > <URL:
> > > > > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > When I compiled MET 8.0 the last
time,
> > > > > > > > > > > > > > > >> > it
> > > > > > > > > > > > > > > >> > worked.
> > > > > > > > > > > > > > > >> > I
> > > > > > > > > > > > > > > >> > was
> > > > > > > > > > > > > > > >> > also
> > > > > > > > > > > > > > > >> > able
> > > > > > > > > > > > > to
> > > > > > > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > [root at maury ramos]# ssh ramos at leo1
> > > > > > > > > > > > > > > >> > Password:
> > > > > > > > > > > > > > > >> > Last login: Thu May 9 17:38:30
2019
> > > > > > > > > > > > > > > >> > from
> > > > > > > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > *** Welcome to Cray eLogin Server
***
> > > > > > > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > > > > > > >> > 16 vcores, boot_memtotal:
257916mb
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > You are accessing a U.S. Government
> > > > > > > > > > > > > > > >> > (USG)
> > > > > > > > > > > > > > > >> > Information
> > > > > > > > > > > > > > > >> > System
> > > > > > > > > > > > > > > >> > (IS)
> > > > > > > > > > > > > > that
> > > > > > > > > > > > > > > >> is
> > > > > > > > > > > > > > > >> > provided for USG-authorized use
only.
> > > > > > > > > > > > > > > >> > By using this IS (which includes
any
> > > > > > > > > > > > > > > >> > device
> > > > > > > > > > > > > > > >> > attached
> > > > > > > > > > > > > > > >> > to
> > > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > > > >> > IS),
> > > > > > > > > > > > > > you
> > > > > > > > > > > > > > > >> > consent to the following
conditions:
> > > > > > > > > > > > > > > >> > -The USG routinely intercepts and
> > > > > > > > > > > > > > > >> > monitors
> > > > > > > > > > > > > > > >> > communications
> > > > > > > > > > > > > > > >> > on
> > > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > IS
> > > > > > > > > > > > > > > for
> > > > > > > > > > > > > > > >> > purposes including, but not limited
> > > > > > > > > > > > > > > >> > to,
> > > > > > > > > > > > > > > >> > penetration testing, COMSEC
> > > > > > > > > > > > > > > >> > monitoring,
> > > > > > > > > > > > > > > >> > network
> > > > > > > > > > > > > > > >> > operations
> > > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > > > defense,
> > > > > > > > > > > > > > > >> > personnel misconduct (PM), law
> > > > > > > > > > > > > > > >> > enforcement
> > > > > > > > > > > > > > > >> > (LE),
> > > > > > > > > > > > > > > >> > and counterintelligence (CI)
> > > > > > > > > > > > > > > >> > investigations.
> > > > > > > > > > > > > > > >> > -At any time, the USG may inspect
and
> > > > > > > > > > > > > > > >> > seize
> > > > > > > > > > > > > > > >> > data
> > > > > > > > > > > > > > > >> > stored
> > > > > > > > > > > > > > > >> > on
> > > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > IS.
> > > > > > > > > > > > > > > >> > -Communications using, or data
stored
> > > > > > > > > > > > > > > >> > on,
> > > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > > > >> > IS
> > > > > > > > > > > > > > > >> > are
> > > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > > >> > private,
> > > > > > > > > > > > > > are
> > > > > > > > > > > > > > > >> > subject to routine monitoring,
> > > > > > > > > > > > > > > >> > interception,
> > > > > > > > > > > > > > > >> > and search, and may be disclosed or
> > > > > > > > > > > > > > > >> > used
> > > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > > >> > any
> > > > > > > > > > > > > > > >> > USG-
> > > > > > > > > > > > > > > >> > authorized
> > > > > > > > > > > > > > > purpose.
> > > > > > > > > > > > > > > >> > -This IS includes security measures
> > > > > > > > > > > > > > > >> > (e.g.,
> > > > > > > > > > > > > > > >> > authentication
> > > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > access
> > > > > > > > > > > > > > > >> > controls) to protect USG interests
--
> > > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > > > > > > >> > -Notwithstanding the above, using
this
> > > > > > > > > > > > > > > >> > IS
> > > > > > > > > > > > > > > >> > does
> > > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > > >> > constitute
> > > > > > > > > > > > > > consent
> > > > > > > > > > > > > > > to
> > > > > > > > > > > > > > > >> > PM, LE or CI investigative
searching
> > > > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > > > >> > monitoring of the content of
> > > > > > > > > > > > > > > >> > privileged
> > > > > > > > > > > > > > > >> > communications,
> > > > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > > > >> > work
> > > > > > > > > > > > > > > product,
> > > > > > > > > > > > > > > >> > related to personal representation
or
> > > > > > > > > > > > > > > >> > services by attorneys,
> > > > > > > > > > > > > > > >> > psychotherapists,
> > > > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > > > >> > clergy,
> > > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > > > >> > their
> > > > > > > > > > > > > > > >> assistants.
> > > > > > > > > > > > > > > >> > Such communications and work
product
> > > > > > > > > > > > > > > >> > are
> > > > > > > > > > > > > > > >> > private and confidential. See User
> > > > > > > > > > > > > > > >> > Agreement
> > > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > > >> > details.
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05 PM
> > > > > > > > > > > > > > > >> > To: Ramos, Mr. Gregory, Contractor,
> > > > > > > > > > > > > > > >> > Code
> > > > > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu
#90091]
> > > > > > > > > > > > > > > >> > Help
> > > > > > > > > > > > > > > >> > regarding
> > > > > > > > > > > > > > > >> > MET
> > > > > > > > > > > > > > > >> > 8.1
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > >> > Prestopnik
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > Hi Gregory. I have not tested with
> > > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > > >> > 6.3.0
> > > > > > > > > > > > > > > >> > of
> > > > > > > > > > > > > > > >> > the
> > > > > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > > > compiler,
> > > > > > > > > > > > > > > >> but
> > > > > > > > > > > > > > > >> > rather only with lower versions
> > > > > > > > > > > > > > > >> > (specifically
> > > > > > > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > > > > > > >> > We
> > > > > > > > > > > > > > > >> > would,
> > > > > > > > > > > > > of
> > > > > > > > > > > > > > > >> course,
> > > > > > > > > > > > > > > >> > want our code to work with higher
> > > > > > > > > > > > > > > >> > versions
> > > > > > > > > > > > > > > >> > as
> > > > > > > > > > > > > > > >> > well.
> > > > > > > > > > > > > > > >> > I
> > > > > > > > > > > > > > > >> > have
> > > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > yet
> > > > > > > > > > > > > > > had
> > > > > > > > > > > > > > > >> an
> > > > > > > > > > > > > > > >> > opportunity to test with a higher
> > > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > > >> > like
> > > > > > > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > > > > > > >> > Do
> > > > > > > > > > > > > > > >> > you have
> > > > > > > > > > > > > > the
> > > > > > > > > > > > > > > >> > ability to compile MET using a
lesser
> > > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > > >> > of
> > > > > > > > > > > > > > > >> > the
> > > > > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > > > > >> > compiler
> > > > > > > > > > > > > to
> > > > > > > > > > > > > > > >> see if
> > > > > > > > > > > > > > > >> > that clears up the issues you are
> > > > > > > > > > > > > > > >> > experiencing?
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > Julie
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM
Ramos,
> > > > > > > > > > > > > > > >> > Mr.
> > > > > > > > > > > > > > > >> > Gregory,
> > > > > > > > > > > > > > > >> > Contractor,
> > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > <URL:
> > > > > > > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Greg
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22
AM
> > > > > > > > > > > > > > > >> > > To: Ramos, Mr. Gregory,
Contractor,
> > > > > > > > > > > > > > > >> > > Code
> > > > > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu
> > > > > > > > > > > > > > > >> > > #90091]
> > > > > > > > > > > > > > > >> > > Help
> > > > > > > > > > > > > > > >> > > regarding
> > > > > > > > > > > > > > > >> > > MET
> > > > > > > > > > > > > > > >> > > 8.1
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Hi Greg. Thank you for passing
> > > > > > > > > > > > > > > >> > > along
> > > > > > > > > > > > > > > >> > > your
> > > > > > > > > > > > > > > >> > > config.log
> > > > > > > > > > > > > > > >> > > file. I
> > > > > > > > > > > > > > see a
> > > > > > > > > > > > > > > >> > couple
> > > > > > > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Based on those errors, it looks
like
> > > > > > > > > > > > > > > >> > > you
> > > > > > > > > > > > > > > >> > > may
> > > > > > > > > > > > > > > >> > > not
> > > > > > > > > > > > > > > >> > > have
> > > > > > > > > > > > > > > >> > > flex
> > > > > > > > > > > > > > > >> > > and
> > > > > > > > > > > > > > bison
> > > > > > > > > > > > > > > >> > > installed. Please install those
and
> > > > > > > > > > > > > > > >> > > try
> > > > > > > > > > > > > > > >> > > running
> > > > > > > > > > > > > > > >> > > configure
> > > > > > > > > > > > > again.
> > > > > > > > > > > > > > > >> Please
> > > > > > > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Also, I just wanted to address
one
> > > > > > > > > > > > > > > >> > > other
> > > > > > > > > > > > > > > >> > > thing.
> > > > > > > > > > > > > > > >> > > In
> > > > > > > > > > > > > > > >> > > your
> > > > > > > > > > > > > original
> > > > > > > > > > > > > > > >> email
> > > > > > > > > > > > > > > >> > you
> > > > > > > > > > > > > > > >> > > listed the following as part of
your
> > > > > > > > > > > > > > > >> > > "MET
> > > > > > > > > > > > > > > >> > > Configuration
> > > > > > > > > > > > > settings":
> > > > > > > > > > > > > > > >> > > export MET_PYTHON_LD=-lpython2.7
> > > > > > > > > > > > > > > >> > > -lpthread
> > > > > > > > > > > > > > > >> > > -ldl
> > > > > > > > > > > > > > > >> > > -lutil
> > > > > > > > > > > > > > > >> > > -lm
> > > > > > > > > > > > > > -Xlinker
> > > > > > > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > However, in your config.log file
it
> > > > > > > > > > > > > > > >> > > looks
> > > > > > > > > > > > > > > >> > > like
> > > > > > > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > > > > > > >> actually
> > > > > > > > > > > > > > > >> > > set to be "-
> > > > > > > > > > > > > > > >> > > L/software/depot/anaconda-
> > > > > > > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > > > > > > -lpthread
> > > > > > > > > > > > > > > >> > -ldl
> > > > > > > > > > > > > > > >> > > -lutil -lm -Xlinker -export-
> > > > > > > > > > > > > > > >> > > dynamic",
> > > > > > > > > > > > > > > >> > > which
> > > > > > > > > > > > > > > >> > > is
> > > > > > > > > > > > > > > >> > > correct
> > > > > > > > > > > > > > > >> > > because
> > > > > > > > > > > > > you
> > > > > > > > > > > > > > > >> need
> > > > > > > > > > > > > > > >> > to
> > > > > > > > > > > > > > > >> > > have that -L part in there, so I
> > > > > > > > > > > > > > > >> > > just
> > > > > > > > > > > > > > > >> > > want
> > > > > > > > > > > > > > > >> > > to
> > > > > > > > > > > > > > > >> > > ensure
> > > > > > > > > > > > > > > >> > > that
> > > > > > > > > > > > > > > >> > > will
> > > > > > > > > > > > > > stay
> > > > > > > > > > > > > > > >> there
> > > > > > > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > Thanks,
> > > > > > > > > > > > > > > >> > > Julie
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM
> > > > > > > > > > > > > > > >> > > Ramos,
> > > > > > > > > > > > > > > >> > > Mr.
> > > > > > > > > > > > > > > >> > > Gregory,
> > > > > > > > > > > > > > > >> > > Contractor,
> > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > > > > >> > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > <URL:
> > > > > > > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > Configure.log has no meaningful
> > > > > > > > > > > > > > > >> > > > info:
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
> > > > > > > > > > > > > > > >> > > > configure.log
> > > > > > > > > > > > > > > >> > > > -bash: [ramos at predict: command
not
> > > > > > > > > > > > > > > >> > > > found
> > > > > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > > > > > > >> > > > From: John Halley Gotway via RT
> > > > > > > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > >> > > > Sent: Monday, May 6, 2019 4:03
PM
> > > > > > > > > > > > > > > >> > > > To: Ramos, Mr. Gregory,
> > > > > > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > > > > > >> > > > Code
> > > > > > > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu
> > > > > > > > > > > > > > > >> > > > #90091]
> > > > > > > > > > > > > > > >> > > > Help
> > > > > > > > > > > > > > > >> > > > regarding
> > > > > > > > > > > > > > > >> > > > MET
> > > > > > > > > > > > > > > >> > > > 8.1
> > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > I'll go ahead and assign this
> > > > > > > > > > > > > > > >> > > > ticket
> > > > > > > > > > > > > > > >> > > > to
> > > > > > > > > > > > > > > >> > > > Julie,
> > > > > > > > > > > > > > > >> > > > and
> > > > > > > > > > > > > > > >> > > > she
> > > > > > > > > > > > > > > >> > > > should
> > > > > > > > > > > > > be
> > > > > > > > > > > > > > > >> > writing
> > > > > > > > > > > > > > > >> > > > you back in the next couple of
> > > > > > > > > > > > > > > >> > > > days.
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > I do know she'll want to see
both
> > > > > > > > > > > > > > > >> > > > the
> > > > > > > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > > > > > > >> > > > file you
> > > > > > > > > > > > > > > >> > generated
> > > > > > > > > > > > > > > >> > > as
> > > > > > > > > > > > > > > >> > > > well as the "config.log" file
from
> > > > > > > > > > > > > > > >> > > > that
> > > > > > > > > > > > > > > >> > > > same
> > > > > > > > > > > > > > > >> > > > directory.
> > > > > > > > > > > > > > > >> > > > So
> > > > > > > > > > > > > > please
> > > > > > > > > > > > > > > >> send
> > > > > > > > > > > > > > > >> > > > those along when you get a
chance.
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > > > > > > >> > > > John
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47 PM
> > > > > > > > > > > > > > > >> > > > Ramos,
> > > > > > > > > > > > > > > >> > > > Mr.
> > > > > > > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > > > > >> > > > via RT <met_help at ucar.edu>
wrote:
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019:
> > > > > > > > > > > > > > > >> > > > > Request
> > > > > > > > > > > > > > > >> > > > > 90091
> > > > > > > > > > > > > > > >> > > > > was
> > > > > > > > > > > > > > > >> > > > > acted
> > > > > > > > > > > > > > > >> > > > > upon.
> > > > > > > > > > > > > > > >> > > > > Transaction: Ticket created
by
> > > > > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > > > > > > >> > > > > Subject: Help regarding MET
8.1
> > > > > > > > > > > > > > > >> > > > > Julie
> > > > > > > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > > > > > > >> > > > > Requestors:
> > > > > > > > > > > > > > > >> > > > >
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > > > Julie helped me compiled 8.0
> > > > > > > > > > > > > > > >> > > > > using
> > > > > > > > > > > > > > > >> > > > > gcc
> > > > > > > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > > > > > > >> > > > > and
> > > > > > > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > > > > > > 2.4.0.
> > > > > > > > > > > > > > > >> The
> > > > > > > > > > > > > > > >> > > user
> > > > > > > > > > > > > > > >> > > > > asked for 8.1. I took notes
last
> > > > > > > > > > > > > > > >> > > > > time,
> > > > > > > > > > > > > > > >> > > > > but
> > > > > > > > > > > > > > > >> > > > > running
> > > > > > > > > > > > > > > >> > > > > into
> > > > > > > > > > > > > > > problems:
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > > > MET Configuration settings...
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > > MET_GSL=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > MET_PYTHON_CC=-
> > > > > > > > > > > > > > > >> > I/software/depot/anaconda-
> > > > > > > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g
-fwrapv
> > > > > > > > > > > > > > > >> > > > > -O3
> > > > > > > > > > > > > > > >> > > > > -Wall
> > > > > > > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > > MET_HDF=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_HDFEOS=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_NETCDF=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > MET_CAIROLIB=/software/depot/met-
> > > > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > > >> > > > > export MET_PYTHON_LD=-
lpython2.7
> > > > > > > > > > > > > > > >> > > > > -lpthread
> > > > > > > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > > > > > > >> > > > > -lm
> > > > > > > > > > > > > > > >> -Xlinker
> > > > > > > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_GRIB2C=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_SUBDIR=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > >> > > > >
MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > > >> > > > > cd /software/depot/met-
8.1/met-
> > > > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > > > >> > > > > ./configure
> > > > > > > > > > > > > > > >> > > > > --prefix=/software/depot/met-
> > > > > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > > > >> --enable-grib2
> > > > > > > > > > > > > > > >> > > > > --enable-modis --enable-
> > > > > > > > > > > > > > > >> > > > > mode_graphics
> > > > > > > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > > > > > > >> > > configure.log
> > > > > > > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > > > > > > >> > > > > configure returned with non-
zero
> > > > > > > > > > > > > > > >> > > > > (127)
> > > > > > > > > > > > > > > >> > > > > status
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > >
> >
> >
> >
------------------------------------------------
Subject: Help regarding MET 8.1 Julie Prestopnik
From: Howard Soh
Time: Tue May 28 08:50:38 2019
Thanks for update.
It passes the testing!
Cheers,
Howard
On Sat May 25 20:58:24 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> I realized that I was not cleaning up the old versions built with
the
> other compilers. Please see attached make_test.log.
>
> Greg
>
> -----Original Message-----
> From: Howard Soh via RT [mailto:met_help at ucar.edu]
> Sent: Thursday, May 23, 2019 5:25 PM
> To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> Prestopnik
>
> I'm sorry for the confusion.
>
> I thought we have two solutions when I took over this ticket from
> Julie. We tried the first solution and found it did not work. You
> compiled with GNU 6.3.0 but I compiled it with both GNU 6.3.0 and
> 7.3.0. And the same runtime error with GNU 7.3.0. I won't pursue the
> first solution because it's beyond my responsibility.
>
> The solution 2 was actually a suggestion to setup the python
> environment with matching compiler for MET 8.1.
>
> The next release will support GNU 6.3.0 or higher.
> MET can not support the python environment which requires library
> files from GNU 7.x.
> I recommend you to create a new ticket for further issue. I would
like
> to close this ticket.
>
> Cheers,
> Howard
>
>
> On Thu May 23 17:26:50 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > This is the statement I don't understand:
> >
> > Solution 1: Compile MET and third party libraries with GNU 7.x.
> > It turned out MET 8.1 is not ready for GNU 6.3.0 or higher
> >
> > You say it doesn't work for 6.3.0 and higher, but suggest 7.x. I
> > don't
> > know what you are says. I tried MET 8.1 with 7.x and every time I
> > compile I rebuilt the external libraries.
> >
> > Greg
> >
> > -----Original Message-----
> > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > Sent: Thursday, May 23, 2019 1:12 PM
> > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > Prestopnik
> >
> > Known facts:
> > - GNU 4.x, 5.x, and 6.x compiler work with libgfortran.so.3, but
they
> > are not work with libgfortran.so.4.
> > - libgfortran.so.4 exists at the PYTHON configuration
> > (/software/depot/anaconda-2.4.0/lib)
> > - MET 8.1 was compiled with GNU 4.4.7 but linked with
> > libgfortran.so.4
> > which does not work with GNU 4.4.7. ==> That's why "make test"
failed
> > with pb2nc.
> >
> >
> > MET is expecting only libpython2.7.a (and three dependent
libraries)
> > to enable python, but /software/depot/anaconda-2.4.0/lib has more
> > library files. The extra library files at
/software/depot/anaconda-
> > 2.4.0/lib cause the runtime error with pb2nc and other MET tools.
> > Note: libpython2.7.a requires three more library files (need -ldl
> > -lutil -lpthread at link time).
> >
> > The anaconda is collection of python packages and many packages
> > requires binary (library) files. For example, cfunits package
> > requires
> > Unidata udunits library. I'm not sure which python package but
there
> > is at least one python package which requires libgfortran.so.4.
> >
> >
> > Two possible solutions:
> >
> > Solution 1: Compile MET and third party libraries with GNU 7.x.
> > It turned out MET 8.1 is not ready for GNU 6.3.0 or higher
> >
> > Solution 2: Remove libgfortan.so.4 from build/run environment and
use
> > libgfortan.s
> >
> > If I were you, I would do this way:
> > 1. Copy /software/depot/anaconda-2.4.0 to
/software/depot/anaconda-
> > 2.4.0_MET
> > 2. Delete all library files except libpython* at
> > /software/depot/anaconda-2.4.0_MET/lib
> > 3. Rebuild third party libraries and MET with GCC 4.4.7 with
> > /software/depot/anaconda-2.4.0_MET instead of
> > /software/depot/anaconda-2.4.0
> > 4. Run MET with /software/depot/anaconda-2.4.0_MET/lib at
> > LD_LIBRARY_PATH.
> > 5. If python under MET fails, add missing library to
> > /software/depot/anaconda-2.4.0_MET/lib except libgfortran.so.4
> >
> > Cheers,
> > Howard
> >
> >
> >
> > On Thu May 23 09:47:54 2019, Greg.Ramos.ctr at nrlmry.navy.mil wrote:
> > > Even gcc 4.4.7 had problems. See attachment.
> > >
> > > Greg
> > >
> > > -----Original Message-----
> > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > Sent: Thursday, May 23, 2019 7:23 AM
> > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > Prestopnik
> > >
> > > No, they are not reliable. ascii2nc did not process the
arguments.
> > > It
> > > worked without argument which displays the usage (or help)
message.
> > > This happens to other executables.
> > >
> > > Cheers,
> > > Howard
> > >
> > > On Wed May 22 19:05:44 2019, Greg.Ramos.ctr at nrlmry.navy.mil
wrote:
> > > > That's fine. If the make test fails, doesn't that mean the
> > > > executables
> > > > created aren't reliable?
> > > >
> > > > Greg
> > > >
> > > > -----Original Message-----
> > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > Sent: Wednesday, May 22, 2019 5:38 PM
> > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1 Julie
> > > > Prestopnik
> > > >
> > > > I'm sorry that MET code is not ready for newer GNU compiler.
The
> > > > error
> > > > with "make test" was caused by changed APIs from newer gnu
> > > > compiler.
> > > > I
> > > > fixed it for ascii2nc locally with updating two files. I tried
> > > > few
> > > > MET
> > > > tools and found more than 10 files should be updated.
> > > >
> > > > I think it's beyond helpdesk work. It's better to support the
> > > > newer
> > > > version GNU compiler with next release.
> > > >
> > > > Cheers,
> > > > Howard
> > > >
> > > >
> > > > On Wed May 22 12:47:04 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > wrote:
> > > > > Attached is the Makefile, just in case.
> > > > >
> > > > > -----Original Message-----
> > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > Sent: Wednesday, May 22, 2019 11:34 AM
> > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
Julie
> > > > > Prestopnik
> > > > >
> > > > > Would you run the same command manually and sen me the
output?
> > > > >
> > > > > cd /software/depot/met-8.1a/met-8.1a/scripts
> > > > > ../src/tools/other/ascii2nc/ascii2nc
> > > > > ../data/sample_obs/ascii/sample_ascii_obs.txt
./sample_ascii.nc
> > > > > -v
> > > > > 2
> > > > > (NOTE: the same dcommand but one line instead of multiple
> > > > > lines)
> > > > >
> > > > > If the command works, would you send me Makefile at the
current
> > > > > directory.
> > > > > If not working, please run following commands and send me
> > > > > ascii2nc_test.log.
> > > > >
> > > > > ../src/tools/other/ascii2nc/ascii2nc
> > > > > ../data/sample_obs/ascii/sample_ascii_obs.txt
./sample_ascii.nc
> > > > > -v
> > > > > 5
> > > > > -log ascii2nc_test.log
> > > > >
> > > > > ldd ../src/tools/other/ascii2nc/ascii2nc >>
ascii2nc_test.log
> > > > >
> > > > >
> > > > > Cheers,
> > > > > Howard
> > > > >
> > > > >
> > > > > On Wed May 22 11:26:02 2019, Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > wrote:
> > > > > > Attached find my make.log and make_test.log
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > Sent: Wednesday, May 22, 2019 7:11 AM
> > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > Julie
> > > > > > Prestopnik
> > > > > >
> > > > > > The runntime NetCDF library is decided by LD_LIBRARY_PATH.
> > > > > > LD_LIBRARY_PATH can be changed by module loading or by
user
> > > > > > configurations. If the problem happens with NetCDF, would
you
> > > > > > ask
> > > > > > them
> > > > > > to run this command and check which NetCDF library is
loaded?
> > > > > >
> > > > > > ldd bin/<MET_tool_name> | grep netcdf
> > > > > > ldd bin/<MET_tool_name> | grep hdf
> > > > > >
> > > > > > for example,
> > > > > > ldd bin/pb2nc | grep netcdf
> > > > > > ldd bin/pb2nc | grep hdf
> > > > > > ldd bin/grid_stat | grep netcdf
> > > > > > ldd bin/grid_stat | grep hdf
> > > > > >
> > > > > > Note: There are dependency between NetCDF4 and HDF5.
> > > > > >
> > > > > > Cheers,
> > > > > > Howard
> > > > > >
> > > > > > On Tue May 21 18:57:59 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > wrote:
> > > > > > > OK, we have several people who are using the 8.1 version
I
> > > > > > > built.
> > > > > > > We
> > > > > > > use a central location:
> > > > > > >
> > > > > > > /software/depot
> > > > > > >
> > > > > > > To house all of our software. To be clear, the first
build
> > > > > > > went
> > > > > > > OK,
> > > > > > > it
> > > > > > > was 'make test' that failed. So the users are using
that,
> > > > > > > but
> > > > > > > someone
> > > > > > > ran into an error today and they asked me about NetCDF.
I
> > > > > > > think
> > > > > > > it
> > > > > > > was
> > > > > > > their setup. The same build was used on two different
> > > > > > > machines,
> > > > > > > one
> > > > > > > had an error, one didn't.
> > > > > > >
> > > > > > > Greg
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > Sent: Tuesday, May 21, 2019 5:50 PM
> > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET 8.1
> > > > > > > Julie
> > > > > > > Prestopnik
> > > > > > >
> > > > > > > No, external libraries are not changed.
> > > > > > >
> > > > > > > Personally, I'm using newer NetCDF library (4.6.x
instead
> > > > > > > of
> > > > > > > 4.4.1.1).
> > > > > > >
> > > > > > > Cheers,
> > > > > > > Howard
> > > > > > >
> > > > > > > On Tue May 21 18:39:25 2019,
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > wrote:
> > > > > > > > No, that is not what I am asking. Every time I build,
I
> > > > > > > > use
> > > > > > > > your
> > > > > > > > script which builds everything.
> > > > > > > >
> > > > > > > > What I am asking is, did the versions of the external
> > > > > > > > libraries
> > > > > > > > change?
> > > > > > > >
> > > > > > > > Greg
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > Sent: Tuesday, May 21, 2019 5:34 PM
> > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding MET
8.1
> > > > > > > > Julie
> > > > > > > > Prestopnik
> > > > > > > >
> > > > > > > > Yes, the third party libraries should be compiled with
> > > > > > > > newer
> > > > > > > > version.
> > > > > > > >
> > > > > > > > The compile error with gnu 7.3.0 happens with gnu
6.3.0,
> > > > > > > > too.
> > > > > > > > The fix/patch is not ready officially. One file has
to
> > > > > > > > be
> > > > > > > > corrected
> > > > > > > > to support newer version gnu compiler. Would you
replace
> > > > > > > > data_line.cc
> > > > > > > > with attached file or modify it manually?
> > > > > > > >
> > > > > > > > Filename:
> > > > > > > > met-8.1/src/basic/vx_util/data_line.cc
> > > > > > > >
> > > > > > > > line 202:
> > > > > > > >
> > > > > > > > out << prefix << sstream << Line.substr(j) << "\"\n";
==>
> > > > > > > > out << prefix << sstream.str() << Line.substr(j) <<
> > > > > > > > "\"\n";
> > > > > > > >
> > > > > > > > line 218:
> > > > > > > >
> > > > > > > > out << prefix << sstream << Line.substr(j) << "\"\n";
==>
> > > > > > > > out << prefix << sstream.str() << Line.substr(j) <<
> > > > > > > > "\"\n";
> > > > > > > >
> > > > > > > > Cheers,
> > > > > > > > Howard
> > > > > > > >
> > > > > > > > On Tue May 21 18:21:25 2019,
> > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > wrote:
> > > > > > > > > Did new external libraries need to be built with
8.1?
> > > > > > > > >
> > > > > > > > > Greg
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Howard Soh via RT [mailto:met_help at ucar.edu]
> > > > > > > > > Sent: Thursday, May 16, 2019 4:01 PM
> > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > > 8.1
> > > > > > > > > Julie
> > > > > > > > > Prestopnik
> > > > > > > > >
> > > > > > > > > No new tools but many enhancements.
> > > > > > > > >
> > > > > > > > > It's available at
> > > > > > > > > https://dtcenter.org/community-code/model-
evaluation-
> > > > > > > > > tools-
> > > > > > > > > met/met-
> > > > > > > > > version-8-1
> > > > > > > > >
> > > > > > > > > Cheers,
> > > > > > > > > Howard
> > > > > > > > >
> > > > > > > > > On Thu May 16 16:46:32 2019,
> > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > wrote:
> > > > > > > > > > Maybe you can answer one question while I try to
> > > > > > > > > > reinstall
> > > > > > > > > > everything. What features does 8.1 provide over
8.0?
> > > > > > > > > >
> > > > > > > > > > Greg
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Howard Soh via RT
[mailto:met_help at ucar.edu]
> > > > > > > > > > Sent: Thursday, May 16, 2019 2:46 PM
> > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help regarding
MET
> > > > > > > > > > 8.1
> > > > > > > > > > Julie
> > > > > > > > > > Prestopnik
> > > > > > > > > >
> > > > > > > > > > Would try this command at /software/depot/met-
> > > > > > > > > > 8.1/met-
> > > > > > > > > > 8.1/scripts
> > > > > > > > > > directory?
> > > > > > > > > >
> > > > > > > > > > 1. check the environtment variable
LD_LIBRARY_PATH:
> > > > > > > > > > echo $LD_LIBRARY_PATH
> > > > > > > > > >
> > > > > > > > > > 2. Save LD_LIBRARY_PATH
> > > > > > > > > > setenv LD_LIBRARY_PATH.SAVE $LD_LIBRARY_PATH
> > > > > > > > > > OR
> > > > > > > > > > export LD_LIBRARY_PATH.SAVE=$LD_LIBRARY_PATH
> > > > > > > > > >
> > > > > > > > > > 3. Set LD_LIBRARY_PATH without
> > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > 2.4.0/lib
> > > > > > > > > >
> > > > > > > > > > 4. Check which libgfortran.so at
/software/depot/met-
> > > > > > > > > > 8.1/met-
> > > > > > > > > > 8.1/scripts directory.
> > > > > > > > > >
> > > > > > > > > > ldd ../src/tools/other/pb2nc/pb2nc | grep
libgfortran
> > > > > > > > > > OR
> > > > > > > > > > ldd
> > > > > > > > > > ../bin/pb2nc | grep libgfortran
> > > > > > > > > >
> > > > > > > > > > 5. Check libgfortran version (should be
> > > > > > > > > > libgfortran.so.3,
> > > > > > > > > > not
> > > > > > > > > > so.4)
> > > > > > > > > >
> > > > > > > > > > 6. Run the failed command manually at
> > > > > > > > > > /software/depot/met-
> > > > > > > > > > 8.1/met-
> > > > > > > > > > 8.1/scripts directory if libgfortran.so.3.
> > > > > > > > > >
> > > > > > > > > > ../src/tools/other/pb2nc/pb2nc \
> > > > > > > > > >
> > > > > > > > > >
../data/sample_obs/prepbufr/ndas.t00z.prepbufr.tm12.20070401.nr
> > > > > > > > > > \
> > > > > > > > > > ../out/pb2nc/sample_pb.nc \
> > > > > > > > > > config/PB2NCConfig_G212 \
> > > > > > > > > > -v 2
> > > > > > > > > >
> > > > > > > > > > 7. Change back LD_LIBRARY_PATH
> > > > > > > > > > setenv LD_LIBRARY_PATH $LD_LIBRARY_PATH.SAVE
> > > > > > > > > > OR
> > > > > > > > > > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH.SAVE
> > > > > > > > > >
> > > > > > > > > > Cheers,
> > > > > > > > > > Howard
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > On Thu May 16 15:28:16 2019,
> > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > wrote:
> > > > > > > > > > > [ramos at lorenz bin]$ module load met-8.1/met-8.1-
> > > > > > > > > > > with-
> > > > > > > > > > > grib2-
> > > > > > > > > > > support
> > > > > > > > > > > [ramos at lorenz bin]$ ldd modis_regrid
> > > > > > > > > > > linux-vdso.so.1 => (0x00007ffd599d5000)
> > > > > > > > > > > libpython2.7.so.1.0 =>
/software/depot/anaconda-
> > > > > > > > > > > 2.4.0/lib/libpython2.7.so.1.0
(0x00007f7f19f4e000)
> > > > > > > > > > > libpthread.so.0 => /lib64/libpthread.so.0
> > > > > > > > > > > (0x0000003453800000)
> > > > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > > > (0x0000003453400000)
> > > > > > > > > > > libutil.so.1 => /lib64/libutil.so.1
> > > > > > > > > > > (0x0000003455800000)
> > > > > > > > > > > libpng16.so.16 => /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > > > (0x00007f7f19d0c000)
> > > > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > > > (0x00007f7f19af4000)
> > > > > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > > > > (0x0000003453c00000)
> > > > > > > > > > > libnetcdf_c++4.so.1 => /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > > > (0x00007f7f198a6000)
> > > > > > > > > > > libnetcdf.so.11 => /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > > > (0x00007f7f19567000)
> > > > > > > > > > > libgsl.so.19 => /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > > > (0x00007f7f19125000)
> > > > > > > > > > > libgslcblas.so.0 => /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > > > (0x00007f7f18eeb000)
> > > > > > > > > > > libjpeg.so.9 => /software/depot/anaconda-
> > > > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > > > (0x00007f7f18c99000)
> > > > > > > > > > > libstdc++.so.6 => /software/depot/anaconda-
> > > > > > > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > > > > > > (0x00007f7f18b58000)
> > > > > > > > > > > libgcc_s.so.1 =>
> > > > > > > > > > > /software/depot/anaconda-2.4.0/lib/libgcc_s.so.1
> > > > > > > > > > > (0x00007f7f18b42000)
> > > > > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > > > > (0x0000003453000000)
> > > > > > > > > > > /lib64/ld-linux-x86-64.so.2
(0x000055c024276000)
> > > > > > > > > > > libhdf5_hl.so.10 => /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > > > (0x00007f7f18922000)
> > > > > > > > > > > libhdf5.so.10 => /software/depot/met-
> > > > > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > > > (0x00007f7f18447000)
> > > > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > > > (0x0000003454400000)
> > > > > > > > > > > [ramos at lorenz bin]$
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > From: Howard Soh via RT
[mailto:met_help at ucar.edu]
> > > > > > > > > > > Sent: Thursday, May 16, 2019 1:35 PM
> > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code 7501.1
> > > > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > > > > MET
> > > > > > > > > > > 8.1
> > > > > > > > > > > Julie
> > > > > > > > > > > Prestopnik
> > > > > > > > > > >
> > > > > > > > > > > MET is expecting "libpython2.7.so" to enable
python
> > > > > > > > > > > support.
> > > > > > > > > > >
> > > > > > > > > > > A log message shows the python was not enabled.
Is
> > > > > > > > > > > python
> > > > > > > > > > > supporting is critical?
> > > > > > > > > > >
> > > > > > > > > > > ./configure --prefix=/software/depot/met-
8.1/met-
> > > > > > > > > > > 8.1
> > > > > > > > > > > --enable-grib2 --enable-modis --enable-
> > > > > > > > > > > mode_graphics
> > > > > > > > > > > --enable-lidar2nc > configure.log 2>&1
> > > > > > > > > > >
> > > > > > > > > > > If not, you can build/run MET 8.1 with
gcc/gfortran
> > > > > > > > > > > 4.4.7.
> > > > > > > > > > > 1. Make sure python is not enabled
> > > > > > > > > > > no "--enable-python" option for
./configure
> > > > > > > > > > > 2. Do not set MET_PYTHON_CC and MET_PYTHON_LD
> > > > > > > > > > > 3. Remove "/software/depot/anaconda-
2.4.0/lib"
> > > > > > > > > > > from
> > > > > > > > > > > LD_LIBRARY_PATH at the build time and runtime
both.
> > > > > > > > > > >
> > > > > > > > > > > Cheers,
> > > > > > > > > > > Howard
> > > > > > > > > > >
> > > > > > > > > > > On Thu May 16 14:17:40 2019,
> > > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > wrote:
> > > > > > > > > > > > I was able to compile Met 8.0 on our Cray
with:
> > > > > > > > > > > >
> > > > > > > > > > > > ramos at leo1:~> gcc --version
> > > > > > > > > > > > gcc (GCC) 7.3.0 20180125 (Cray Inc.)
Copyright
> > > > > > > > > > > > (C)
> > > > > > > > > > > > 2017
> > > > > > > > > > > > Free
> > > > > > > > > > > > Software Foundation, Inc.
> > > > > > > > > > > > This is free software; see the source for
copying
> > > > > > > > > > > > conditions.
> > > > > > > > > > > > There
> > > > > > > > > > > > is NO
> > > > > > > > > > > > warranty; not even for MERCHANTABILITY or
> > > > > > > > > > > > FITNESS
> > > > > > > > > > > > FOR
> > > > > > > > > > > > A
> > > > > > > > > > > > PARTICULAR PURPOSE.
> > > > > > > > > > > >
> > > > > > > > > > > > ramos at leo1:~> gfortran --version GNU Fortran
> > > > > > > > > > > > (GCC)
> > > > > > > > > > > > 7.3.0
> > > > > > > > > > > > 20180125 (Cray Inc.) Copyright (C) 2017 Free
> > > > > > > > > > > > Software
> > > > > > > > > > > > Foundation, Inc.
> > > > > > > > > > > > This is free software; see the source for
copying
> > > > > > > > > > > > conditions.
> > > > > > > > > > > > There
> > > > > > > > > > > > is NO
> > > > > > > > > > > > warranty; not even for MERCHANTABILITY or
FITNESS
> > > > > > > > > > > > FOR
> > > > > > > > > > > > A
> > > > > > > > > > > > PARTICULAR PURPOSE.
> > > > > > > > > > > >
> > > > > > > > > > > > ramos at leo1:~>
> > > > > > > > > > > >
> > > > > > > > > > > > We don't have that version on our Red Hat
> > > > > > > > > > > > systems.
> > > > > > > > > > > > Met
> > > > > > > > > > > > 8.0
> > > > > > > > > > > > worked on RH, but 8.1 failed on the 'make
test'.
> > > > > > > > > > > > The
> > > > > > > > > > > > user
> > > > > > > > > > > > says
> > > > > > > > > > > > she is fine with the executables so far. I
will
> > > > > > > > > > > > have
> > > > > > > > > > > > to
> > > > > > > > > > > > build
> > > > > > > > > > > > a
> > > > > > > > > > > > gfortran 7.x version.
> > > > > > > > > > > >
> > > > > > > > > > > > Greg
> > > > > > > > > > > >
> > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > From: Howard Soh via RT
> > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > Sent: Thursday, May 16, 2019 1:11 PM
> > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > Subject: [rt.rap.ucar.edu #90091] Help
regarding
> > > > > > > > > > > > MET
> > > > > > > > > > > > 8.1
> > > > > > > > > > > > Julie
> > > > > > > > > > > > Prestopnik
> > > > > > > > > > > >
> > > > > > > > > > > > Hello,
> > > > > > > > > > > >
> > > > > > > > > > > > Is gcc/gfortran 7.x compiler available?
> > > > > > > > > > > >
> > > > > > > > > > > > The problem was caused by the path for python
> > > > > > > > > > > > library
> > > > > > > > > > > > (/software/depot/anaconda-2.4.0/lib).
> > > > > > > > > > > > libgfortran.so.4
> > > > > > > > > > > > exists
> > > > > > > > > > > > there
> > > > > > > > > > > > from the ldd output. It was used on building
MET.
> > > > > > > > > > > > MET
> > > > > > > > > > > > was
> > > > > > > > > > > > compiled
> > > > > > > > > > > > with gcc 4.4.7 which supports only
> > > > > > > > > > > > libgfortran.so.3,
> > > > > > > > > > > > and
> > > > > > > > > > > > linked
> > > > > > > > > > > > with
> > > > > > > > > > > > libgfortran.so.4 because of MET_PYTHON_LD
> > > > > > > > > > > > configuration.
> > > > > > > > > > > > Some
> > > > > > > > > > > > libraries do not support the backward
> > > > > > > > > > > > compatibility.
> > > > > > > > > > > > libgfortran.so
> > > > > > > > > > > > is
> > > > > > > > > > > > one of them. In this case, the compiler
version
> > > > > > > > > > > > and
> > > > > > > > > > > > library
> > > > > > > > > > > > version
> > > > > > > > > > > > should match.
> > > > > > > > > > > >
> > > > > > > > > > > > [ramos at lorenz ~]$ ldd /software/depot/met-
> > > > > > > > > > > > 8.1/met-
> > > > > > > > > > > > 8.1/bin/pb2nc
> > > > > > > > > > > > |grep
> > > > > > > > > > > > gfortran
> > > > > > > > > > > > libgfortran.so.4 =>
> > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > 2.4.0/lib/libgfortran.so.4
(0x00007fa8eeec7000)
> > > > > > > > > > > >
> > > > > > > > > > > > export MET_PYTHON_LD=-
L/software/depot/anaconda-
> > > > > > > > > > > > 2.4.0/lib\
> > > > > > > > > > > > -lpython2.7\ -lpthread\ -ldl\ -lutil\ -lm\
> > > > > > > > > > > > -Xlinker\
> > > > > > > > > > > > -export-
> > > > > > > > > > > > dynamic
> > > > > > > > > > > >
> > > > > > > > > > > > The solution is compiling third party
libraries
> > > > > > > > > > > > and
> > > > > > > > > > > > MET
> > > > > > > > > > > > with
> > > > > > > > > > > > version
> > > > > > > > > > > > 7.x gcc/gfortran. Version 8.x gcc/gfortran
> > > > > > > > > > > > supports
> > > > > > > > > > > > libgfortran.so.5,
> > > > > > > > > > > > So the same problem will happen if MET is
built
> > > > > > > > > > > > with
> > > > > > > > > > > > gcc/gfortran
> > > > > > > > > > > > 6.x
> > > > > > > > > > > > or gcc/gfortran 8.x.
> > > > > > > > > > > >
> > > > > > > > > > > > Cheers,
> > > > > > > > > > > > Howard
> > > > > > > > > > > >
> > > > > > > > > > > > On Mon May 13 18:36:04 2019,
> > > > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > wrote:
> > > > > > > > > > > > > Attached is the config.log for NetCDf it
shows
> > > > > > > > > > > > > /usr/bin/gcc
> > > > > > > > > > > > >
> > > > > > > > > > > > > Gcc 6.3.0 is a module, 4.4.7 is the built in
> > > > > > > > > > > > > Red
> > > > > > > > > > > > > Hat
> > > > > > > > > > > > > version.
> > > > > > > > > > > > >
> > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > Sent: Monday, May 13, 2019 4:44 PM
> > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
7501.1
> > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > > regarding
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > >
> > > > > > > > > > > > > Thank you. Unfortunately, that does not
tell
> > > > > > > > > > > > > me
> > > > > > > > > > > > > if
> > > > > > > > > > > > > the
> > > > > > > > > > > > > libraries
> > > > > > > > > > > > > and
> > > > > > > > > > > > > the
> > > > > > > > > > > > > MET code were built with the same version of
> > > > > > > > > > > > > the
> > > > > > > > > > > > > compiler.
> > > > > > > > > > > > > I
> > > > > > > > > > > > > also
> > > > > > > > > > > > > do
> > > > > > > > > > > > > not
> > > > > > > > > > > > > see bufrlib in that list.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Can you please tell me - were the libraries
and
> > > > > > > > > > > > > the
> > > > > > > > > > > > > MET
> > > > > > > > > > > > > code
> > > > > > > > > > > > > built
> > > > > > > > > > > > > with the
> > > > > > > > > > > > > same version of the compiler? I'm checking
to
> > > > > > > > > > > > > see
> > > > > > > > > > > > > if,
> > > > > > > > > > > > > for
> > > > > > > > > > > > > example,
> > > > > > > > > > > > > the
> > > > > > > > > > > > > libraries were built with gcc-6.3.0 but the
MET
> > > > > > > > > > > > > code
> > > > > > > > > > > > > was
> > > > > > > > > > > > > build
> > > > > > > > > > > > > with
> > > > > > > > > > > > > gcc-4.4.7.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Thanks!
> > > > > > > > > > > > >
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > >
> > > > > > > > > > > > > On Mon, May 13, 2019 at 5:39 PM Ramos, Mr.
> > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > Code
> > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > <URL:
> > > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > You can see I am using those libraries
for
> > > > > > > > > > > > > > MET
> > > > > > > > > > > > > > 8.1:
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > [root at maury2 bin]# ldd modis_regrid
> > > > > > > > > > > > > > linux-vdso.so.1 =>
> > > > > > > > > > > > > > (0x00007ffd449a3000)
> > > > > > > > > > > > > > libpython2.7.so.1.0 =>
> > > > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > > > 2.4.0/lib/libpython2.7.so.1.0
> > > > > > > > > > > > > > (0x00002ab75e1f3000)
> > > > > > > > > > > > > > libpthread.so.0 =>
> > > > > > > > > > > > > > /lib64/libpthread.so.0
> > > > > > > > > > > > > > (0x00002ab75e63b000)
> > > > > > > > > > > > > > libdl.so.2 => /lib64/libdl.so.2
> > > > > > > > > > > > > > (0x00002ab75e858000)
> > > > > > > > > > > > > > libutil.so.1 =>
/lib64/libutil.so.1
> > > > > > > > > > > > > > (0x00002ab75ea5c000)
> > > > > > > > > > > > > > libpng16.so.16 =>
> > > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > > 8.1/external_libs/lib/libpng16.so.16
> > > > > > > > > > > > > > (0x00002ab75ec60000)
> > > > > > > > > > > > > > libz.so.1 => /software/depot/met-
> > > > > > > > > > > > > > 8.1/external_libs/lib/libz.so.1
> > > > > > > > > > > > > > (0x00002ab75ee92000)
> > > > > > > > > > > > > > libm.so.6 => /lib64/libm.so.6
> > > > > > > > > > > > > > (0x00002ab75f0aa000)
> > > > > > > > > > > > > > libnetcdf_c++4.so.1 =>
> > > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > > 8.1/external_libs/lib/libnetcdf_c++4.so.1
> > > > > > > > > > > > > > (0x00002ab75f32f000)
> > > > > > > > > > > > > > libnetcdf.so.11 =>
> > > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > > 8.1/external_libs/lib/libnetcdf.so.11
> > > > > > > > > > > > > > (0x00002ab75f57c000)
> > > > > > > > > > > > > > libgsl.so.19 =>
> > > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > > 8.1/external_libs/lib/libgsl.so.19
> > > > > > > > > > > > > > (0x00002ab75f8bb000)
> > > > > > > > > > > > > > libgslcblas.so.0 =>
> > > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > > 8.1/external_libs/lib/libgslcblas.so.0
> > > > > > > > > > > > > > (0x00002ab75fcfe000)
> > > > > > > > > > > > > > libjpeg.so.9 =>
> > > > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > > > 2.4.0/lib/libjpeg.so.9
> > > > > > > > > > > > > > (0x00002ab75ff37000)
> > > > > > > > > > > > > > libstdc++.so.6 =>
> > > > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > > > 2.4.0/lib/libstdc++.so.6
> > > > > > > > > > > > > > (0x00002ab760189000)
> > > > > > > > > > > > > > libgcc_s.so.1 =>
> > > > > > > > > > > > > > /software/depot/anaconda-
> > > > > > > > > > > > > > 2.4.0/lib/libgcc_s.so.1
> > > > > > > > > > > > > > (0x00002ab7602cb000)
> > > > > > > > > > > > > > libc.so.6 => /lib64/libc.so.6
> > > > > > > > > > > > > > (0x00002ab7602e0000)
> > > > > > > > > > > > > > /lib64/ld-linux-x86-64.so.2
> > > > > > > > > > > > > > (0x0000559353f4f000)
> > > > > > > > > > > > > > libhdf5_hl.so.10 =>
> > > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > > 8.1/external_libs/lib/libhdf5_hl.so.10
> > > > > > > > > > > > > > (0x00002ab760675000)
> > > > > > > > > > > > > > libhdf5.so.10 =>
> > > > > > > > > > > > > > /software/depot/met-
> > > > > > > > > > > > > > 8.1/external_libs/lib/libhdf5.so.10
> > > > > > > > > > > > > > (0x00002ab760894000)
> > > > > > > > > > > > > > librt.so.1 => /lib64/librt.so.1
> > > > > > > > > > > > > > (0x00002ab760d6f000)
> > > > > > > > > > > > > > [root at maury2 bin]#
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > Sent: Monday, May 13, 2019 4:26 PM
> > > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091] Help
> > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > MET
> > > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Thank you, Greg. Can you please tell me -
> > > > > > > > > > > > > > were
> > > > > > > > > > > > > > the
> > > > > > > > > > > > > > libraries
> > > > > > > > > > > > > > and
> > > > > > > > > > > > > > the
> > > > > > > > > > > > > > MET
> > > > > > > > > > > > > > code built with the same version of the
> > > > > > > > > > > > > > compiler.
> > > > > > > > > > > > > > I'm
> > > > > > > > > > > > > > checking
> > > > > > > > > > > > > > to
> > > > > > > > > > > > > > see if,
> > > > > > > > > > > > > > for example, the libraries were built with
> > > > > > > > > > > > > > gcc-
> > > > > > > > > > > > > > 6.3.0
> > > > > > > > > > > > > > but
> > > > > > > > > > > > > > the
> > > > > > > > > > > > > > MET
> > > > > > > > > > > > > > code
> > > > > > > > > > > > > > was
> > > > > > > > > > > > > > build with gcc-4.4.7.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > It sounds like we need the libraries and
the
> > > > > > > > > > > > > > MET
> > > > > > > > > > > > > > code
> > > > > > > > > > > > > > to
> > > > > > > > > > > > > > be
> > > > > > > > > > > > > > built
> > > > > > > > > > > > > > with the
> > > > > > > > > > > > > > same version of the compiler, in this
case.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Thanks for any information you can
provide.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > On Mon, May 13, 2019 at 3:21 PM Ramos, Mr.
> > > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > <URL:
> > > > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Find the logs attached.
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Greg
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > Sent: Monday, May 13, 2019 2:15 PM
> > > > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor, Code
> > > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091]
Help
> > > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > > MET
> > > > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Could you please run the following:
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > which pb2nc
> > > > > > > > > > > > > > > ldd <full path to pb2nc> | grep gfortran
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > and send me the output?
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Please also send your config.log and
> > > > > > > > > > > > > > > make.log
> > > > > > > > > > > > > > > file.
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Thank you!
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > On Mon, May 13, 2019 at 3:08 PM Ramos,
Mr.
> > > > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <URL:
> > > > > > > > > > > > > > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > I used the buildscript. It should
build
> > > > > > > > > > > > > > > > all
> > > > > > > > > > > > > > > > of
> > > > > > > > > > > > > > > > the
> > > > > > > > > > > > > > > > external
> > > > > > > > > > > > > > > > libraries,
> > > > > > > > > > > > > > so
> > > > > > > > > > > > > > > > I believe everything was built with
the
> > > > > > > > > > > > > > > > same
> > > > > > > > > > > > > > > > compiler.
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > Greg
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > > > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > > Sent: Monday, May 13, 2019 2:07 PM
> > > > > > > > > > > > > > > > To: Ramos, Mr. Gregory, Contractor,
Code
> > > > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > > > Subject: Re: [rt.rap.ucar.edu #90091]
> > > > > > > > > > > > > > > > Help
> > > > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > > > MET
> > > > > > > > > > > > > > > > 8.1
> > > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > Hi Greg. Our developer suspects it
may
> > > > > > > > > > > > > > > > be
> > > > > > > > > > > > > > > > a
> > > > > > > > > > > > > > > > mismatched
> > > > > > > > > > > > > > compiler/library
> > > > > > > > > > > > > > > > version. Was BUFRLIB installed with
the
> > > > > > > > > > > > > > > > same
> > > > > > > > > > > > > > > > compiler
> > > > > > > > > > > > > > > > as
> > > > > > > > > > > > > > > > MET?
> > > > > > > > > > > > > > > > Also,
> > > > > > > > > > > > > > > what
> > > > > > > > > > > > > > > > version of BURRLIB are you using?
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > Thanks,
> > > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > On Mon, May 13, 2019 at 10:13 AM Julie
> > > > > > > > > > > > > > > > Prestopnik
> > > > > > > > > > > > > > > > <jpresto at ucar.edu>
> > > > > > > > > > > > > > > > wrote:
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > > Hi Greg. I am checking in with
another
> > > > > > > > > > > > > > > > > developer
> > > > > > > > > > > > > > > > > regarding
> > > > > > > > > > > > > > > > > the
> > > > > > > > > > > > > > > > > error
> > > > > > > > > > > > > > > you
> > > > > > > > > > > > > > > > > experienced. Thank you for your
> > > > > > > > > > > > > > > > > patience.
> > > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > > On Sun, May 12, 2019 at 2:02 PM
Ramos,
> > > > > > > > > > > > > > > > > Mr.
> > > > > > > > > > > > > > > > > Gregory,
> > > > > > > > > > > > > > > > > Contractor,
> > > > > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > > > 7501.1 via RT <met_help at ucar.edu>
> > > > > > > > > > > > > > > > > wrote:
> > > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > > >> <URL:
> > > > > > > > > > > > > > > > >>
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > > >> I was able to build on Red Hat
using:
> > > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > > >> [ramos at lorenz ~]$ gcc --version
> > > > > > > > > > > > > > > > >> gcc (GCC) 4.4.7 20120313 (Red Hat
> > > > > > > > > > > > > > > > >> 4.4.7-
> > > > > > > > > > > > > > > > >> 23)
> > > > > > > > > > > > > > > > >> Copyright (C) 2010 Free Software
> > > > > > > > > > > > > > > > >> Foundation,
> > > > > > > > > > > > > > > > >> Inc.
> > > > > > > > > > > > > > > > >> This is free software; see the
source
> > > > > > > > > > > > > > > > >> for
> > > > > > > > > > > > > > > > >> copying
> > > > > > > > > > > > > > > > >> conditions.
> > > > > > > > > > > > > > > > >> There
> > > > > > > > > > > > > > > is
> > > > > > > > > > > > > > > > NO
> > > > > > > > > > > > > > > > >> warranty; not even for
MERCHANTABILITY
> > > > > > > > > > > > > > > > >> or
> > > > > > > > > > > > > > > > >> FITNESS
> > > > > > > > > > > > > > > > >> FOR
> > > > > > > > > > > > > > > > >> A
> > > > > > > > > > > > > > > > >> PARTICULAR
> > > > > > > > > > > > > > > > >> PURPOSE.
> > > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > > >> [ramos at lorenz ~]$
> > > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > > >> Not all of the tests passed, please
> > > > > > > > > > > > > > > > >> see
> > > > > > > > > > > > > > > > >> attachment.
> > > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > > >> Greg
> > > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > > >> -----Original Message-----
> > > > > > > > > > > > > > > > >> From: Julie Prestopnik via RT
> > > > > > > > > > > > > > > > >> [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > > >> Sent: Thursday, May 9, 2019 1:46 PM
> > > > > > > > > > > > > > > > >> To: Ramos, Mr. Gregory, Contractor,
> > > > > > > > > > > > > > > > >> Code
> > > > > > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > > > > > >> Subject: Re: [rt.rap.ucar.edu
#90091]
> > > > > > > > > > > > > > > > >> Help
> > > > > > > > > > > > > > > > >> regarding
> > > > > > > > > > > > > > > > >> MET
> > > > > > > > > > > > > > > > >> 8.1
> > > > > > > > > > > > > > > > >> Julie
> > > > > > > > > > > > > > > > >> Prestopnik
> > > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > > >> Thank you for letting me know. I
will
> > > > > > > > > > > > > > > > >> proceed
> > > > > > > > > > > > > > > > >> with
> > > > > > > > > > > > > > > > >> trying
> > > > > > > > > > > > > > > > >> to
> > > > > > > > > > > > > > > reproduce
> > > > > > > > > > > > > > > > >> the
> > > > > > > > > > > > > > > > >> problem using the gcc-6.3.0. I
will
> > > > > > > > > > > > > > > > >> follow
> > > > > > > > > > > > > > > > >> up
> > > > > > > > > > > > > > > > >> once
> > > > > > > > > > > > > > > > >> I
> > > > > > > > > > > > > > > > >> have
> > > > > > > > > > > > > > > > >> more
> > > > > > > > > > > > > > > > >> information.
> > > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > > >> Julie
> > > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > > >> On Thu, May 9, 2019 at 2:17 PM
Ramos,
> > > > > > > > > > > > > > > > >> Mr.
> > > > > > > > > > > > > > > > >> Gregory,
> > > > > > > > > > > > > > > > >> Contractor,
> > > > > > > > > > > > > > > > >> Code
> > > > > > > > > > > > > > > > 7501.1
> > > > > > > > > > > > > > > > >> via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > >> > <URL:
> > > > > > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > >> > When I compiled MET 8.0 the last
> > > > > > > > > > > > > > > > >> > time,
> > > > > > > > > > > > > > > > >> > it
> > > > > > > > > > > > > > > > >> > worked.
> > > > > > > > > > > > > > > > >> > I
> > > > > > > > > > > > > > > > >> > was
> > > > > > > > > > > > > > > > >> > also
> > > > > > > > > > > > > > > > >> > able
> > > > > > > > > > > > > > to
> > > > > > > > > > > > > > > > >> > compile 8.0 on out Cray:
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > >> > [root at maury ramos]# ssh
ramos at leo1
> > > > > > > > > > > > > > > > >> > Password:
> > > > > > > > > > > > > > > > >> > Last login: Thu May 9 17:38:30
2019
> > > > > > > > > > > > > > > > >> > from
> > > > > > > > > > > > > > > > >> > 199.9.0.18
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > >> > *** Welcome to Cray eLogin Server
> > > > > > > > > > > > > > > > >> > ***
> > > > > > > > > > > > > > > > >> > Running 132MB Suse 12.3
> > > > > > > > > > > > > > > > >> > 16 vcores, boot_memtotal:
> > > > > > > > > > > > > > > > >> > 257916mb
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > >> > You are accessing a U.S.
Government
> > > > > > > > > > > > > > > > >> > (USG)
> > > > > > > > > > > > > > > > >> > Information
> > > > > > > > > > > > > > > > >> > System
> > > > > > > > > > > > > > > > >> > (IS)
> > > > > > > > > > > > > > > that
> > > > > > > > > > > > > > > > >> is
> > > > > > > > > > > > > > > > >> > provided for USG-authorized use
> > > > > > > > > > > > > > > > >> > only.
> > > > > > > > > > > > > > > > >> > By using this IS (which includes
any
> > > > > > > > > > > > > > > > >> > device
> > > > > > > > > > > > > > > > >> > attached
> > > > > > > > > > > > > > > > >> > to
> > > > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > > > > >> > IS),
> > > > > > > > > > > > > > > you
> > > > > > > > > > > > > > > > >> > consent to the following
conditions:
> > > > > > > > > > > > > > > > >> > -The USG routinely intercepts and
> > > > > > > > > > > > > > > > >> > monitors
> > > > > > > > > > > > > > > > >> > communications
> > > > > > > > > > > > > > > > >> > on
> > > > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > > IS
> > > > > > > > > > > > > > > > for
> > > > > > > > > > > > > > > > >> > purposes including, but not
limited
> > > > > > > > > > > > > > > > >> > to,
> > > > > > > > > > > > > > > > >> > penetration testing, COMSEC
> > > > > > > > > > > > > > > > >> > monitoring,
> > > > > > > > > > > > > > > > >> > network
> > > > > > > > > > > > > > > > >> > operations
> > > > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > > > > defense,
> > > > > > > > > > > > > > > > >> > personnel misconduct (PM), law
> > > > > > > > > > > > > > > > >> > enforcement
> > > > > > > > > > > > > > > > >> > (LE),
> > > > > > > > > > > > > > > > >> > and counterintelligence (CI)
> > > > > > > > > > > > > > > > >> > investigations.
> > > > > > > > > > > > > > > > >> > -At any time, the USG may inspect
> > > > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > > > > >> > seize
> > > > > > > > > > > > > > > > >> > data
> > > > > > > > > > > > > > > > >> > stored
> > > > > > > > > > > > > > > > >> > on
> > > > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > > IS.
> > > > > > > > > > > > > > > > >> > -Communications using, or data
> > > > > > > > > > > > > > > > >> > stored
> > > > > > > > > > > > > > > > >> > on,
> > > > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > > > > >> > IS
> > > > > > > > > > > > > > > > >> > are
> > > > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > > > >> > private,
> > > > > > > > > > > > > > > are
> > > > > > > > > > > > > > > > >> > subject to routine monitoring,
> > > > > > > > > > > > > > > > >> > interception,
> > > > > > > > > > > > > > > > >> > and search, and may be disclosed
or
> > > > > > > > > > > > > > > > >> > used
> > > > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > > > >> > any
> > > > > > > > > > > > > > > > >> > USG-
> > > > > > > > > > > > > > > > >> > authorized
> > > > > > > > > > > > > > > > purpose.
> > > > > > > > > > > > > > > > >> > -This IS includes security
measures
> > > > > > > > > > > > > > > > >> > (e.g.,
> > > > > > > > > > > > > > > > >> > authentication
> > > > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > > access
> > > > > > > > > > > > > > > > >> > controls) to protect USG
interests
> > > > > > > > > > > > > > > > >> > --
> > > > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > > > >> > your personal benefit or privacy.
> > > > > > > > > > > > > > > > >> > -Notwithstanding the above, using
> > > > > > > > > > > > > > > > >> > this
> > > > > > > > > > > > > > > > >> > IS
> > > > > > > > > > > > > > > > >> > does
> > > > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > > > >> > constitute
> > > > > > > > > > > > > > > consent
> > > > > > > > > > > > > > > > to
> > > > > > > > > > > > > > > > >> > PM, LE or CI investigative
searching
> > > > > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > > > > >> > monitoring of the content of
> > > > > > > > > > > > > > > > >> > privileged
> > > > > > > > > > > > > > > > >> > communications,
> > > > > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > > > > >> > work
> > > > > > > > > > > > > > > > product,
> > > > > > > > > > > > > > > > >> > related to personal
representation
> > > > > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > > > > >> > services by attorneys,
> > > > > > > > > > > > > > > > >> > psychotherapists,
> > > > > > > > > > > > > > > > >> > or
> > > > > > > > > > > > > > > > >> > clergy,
> > > > > > > > > > > > > > > > >> > and
> > > > > > > > > > > > > > > > >> > their
> > > > > > > > > > > > > > > > >> assistants.
> > > > > > > > > > > > > > > > >> > Such communications and work
product
> > > > > > > > > > > > > > > > >> > are
> > > > > > > > > > > > > > > > >> > private and confidential. See
User
> > > > > > > > > > > > > > > > >> > Agreement
> > > > > > > > > > > > > > > > >> > for
> > > > > > > > > > > > > > > > >> > details.
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > >> > ramos at leo1:~> which gcc
> > > > > > > > > > > > > > > > >> > /opt/gcc/7.3.0/bin/gcc
> > > > > > > > > > > > > > > > >> > ramos at leo1:~>
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > >> > -----Original Message-----
> > > > > > > > > > > > > > > > >> > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > > > >> > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > > >> > Sent: Thursday, May 9, 2019 1:05
PM
> > > > > > > > > > > > > > > > >> > To: Ramos, Mr. Gregory,
Contractor,
> > > > > > > > > > > > > > > > >> > Code
> > > > > > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > > > > > >> > Subject: Re: [rt.rap.ucar.edu
> > > > > > > > > > > > > > > > >> > #90091]
> > > > > > > > > > > > > > > > >> > Help
> > > > > > > > > > > > > > > > >> > regarding
> > > > > > > > > > > > > > > > >> > MET
> > > > > > > > > > > > > > > > >> > 8.1
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > > >> > Prestopnik
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > >> > Hi Gregory. I have not tested
with
> > > > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > > > >> > 6.3.0
> > > > > > > > > > > > > > > > >> > of
> > > > > > > > > > > > > > > > >> > the
> > > > > > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > > > > compiler,
> > > > > > > > > > > > > > > > >> but
> > > > > > > > > > > > > > > > >> > rather only with lower versions
> > > > > > > > > > > > > > > > >> > (specifically
> > > > > > > > > > > > > > > > >> > 4.8.5).
> > > > > > > > > > > > > > > > >> > We
> > > > > > > > > > > > > > > > >> > would,
> > > > > > > > > > > > > > of
> > > > > > > > > > > > > > > > >> course,
> > > > > > > > > > > > > > > > >> > want our code to work with higher
> > > > > > > > > > > > > > > > >> > versions
> > > > > > > > > > > > > > > > >> > as
> > > > > > > > > > > > > > > > >> > well.
> > > > > > > > > > > > > > > > >> > I
> > > > > > > > > > > > > > > > >> > have
> > > > > > > > > > > > > > > > >> > not
> > > > > > > > > > > > > > yet
> > > > > > > > > > > > > > > > had
> > > > > > > > > > > > > > > > >> an
> > > > > > > > > > > > > > > > >> > opportunity to test with a higher
> > > > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > > > >> > like
> > > > > > > > > > > > > > > > >> > 6.3.0.
> > > > > > > > > > > > > > > > >> > Do
> > > > > > > > > > > > > > > > >> > you have
> > > > > > > > > > > > > > > the
> > > > > > > > > > > > > > > > >> > ability to compile MET using a
> > > > > > > > > > > > > > > > >> > lesser
> > > > > > > > > > > > > > > > >> > version
> > > > > > > > > > > > > > > > >> > of
> > > > > > > > > > > > > > > > >> > the
> > > > > > > > > > > > > > > > >> > gcc
> > > > > > > > > > > > > > > > >> > compiler
> > > > > > > > > > > > > > to
> > > > > > > > > > > > > > > > >> see if
> > > > > > > > > > > > > > > > >> > that clears up the issues you are
> > > > > > > > > > > > > > > > >> > experiencing?
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > >> > Julie
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > >> > On Thu, May 9, 2019 at 12:13 PM
> > > > > > > > > > > > > > > > >> > Ramos,
> > > > > > > > > > > > > > > > >> > Mr.
> > > > > > > > > > > > > > > > >> > Gregory,
> > > > > > > > > > > > > > > > >> > Contractor,
> > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > > >> 7501.1
> > > > > > > > > > > > > > > > >> > via RT <met_help at ucar.edu> wrote:
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> > > <URL:
> > > > > > > > > > > > > > > > >> > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> > > Any updates or suggestions?
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> > > Greg
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> > > -----Original Message-----
> > > > > > > > > > > > > > > > >> > > From: Julie Prestopnik via RT
> > > > > > > > > > > > > > > > >> > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > > >> > > Sent: Tuesday, May 7, 2019 8:22
AM
> > > > > > > > > > > > > > > > >> > > To: Ramos, Mr. Gregory,
> > > > > > > > > > > > > > > > >> > > Contractor,
> > > > > > > > > > > > > > > > >> > > Code
> > > > > > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > > > > > >> > > Subject: Re: [rt.rap.ucar.edu
> > > > > > > > > > > > > > > > >> > > #90091]
> > > > > > > > > > > > > > > > >> > > Help
> > > > > > > > > > > > > > > > >> > > regarding
> > > > > > > > > > > > > > > > >> > > MET
> > > > > > > > > > > > > > > > >> > > 8.1
> > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > > >> > > Prestopnik
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> > > Hi Greg. Thank you for passing
> > > > > > > > > > > > > > > > >> > > along
> > > > > > > > > > > > > > > > >> > > your
> > > > > > > > > > > > > > > > >> > > config.log
> > > > > > > > > > > > > > > > >> > > file. I
> > > > > > > > > > > > > > > see a
> > > > > > > > > > > > > > > > >> > couple
> > > > > > > > > > > > > > > > >> > > of linker problems in there:
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -lfl
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> > > /usr/bin/ld: cannot find -ll
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> > > Based on those errors, it looks
> > > > > > > > > > > > > > > > >> > > like
> > > > > > > > > > > > > > > > >> > > you
> > > > > > > > > > > > > > > > >> > > may
> > > > > > > > > > > > > > > > >> > > not
> > > > > > > > > > > > > > > > >> > > have
> > > > > > > > > > > > > > > > >> > > flex
> > > > > > > > > > > > > > > > >> > > and
> > > > > > > > > > > > > > > bison
> > > > > > > > > > > > > > > > >> > > installed. Please install
those
> > > > > > > > > > > > > > > > >> > > and
> > > > > > > > > > > > > > > > >> > > try
> > > > > > > > > > > > > > > > >> > > running
> > > > > > > > > > > > > > > > >> > > configure
> > > > > > > > > > > > > > again.
> > > > > > > > > > > > > > > > >> Please
> > > > > > > > > > > > > > > > >> > > let us know how it goes.
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> > > Also, I just wanted to address
one
> > > > > > > > > > > > > > > > >> > > other
> > > > > > > > > > > > > > > > >> > > thing.
> > > > > > > > > > > > > > > > >> > > In
> > > > > > > > > > > > > > > > >> > > your
> > > > > > > > > > > > > > original
> > > > > > > > > > > > > > > > >> email
> > > > > > > > > > > > > > > > >> > you
> > > > > > > > > > > > > > > > >> > > listed the following as part of
> > > > > > > > > > > > > > > > >> > > your
> > > > > > > > > > > > > > > > >> > > "MET
> > > > > > > > > > > > > > > > >> > > Configuration
> > > > > > > > > > > > > > settings":
> > > > > > > > > > > > > > > > >> > > export MET_PYTHON_LD=-
lpython2.7
> > > > > > > > > > > > > > > > >> > > -lpthread
> > > > > > > > > > > > > > > > >> > > -ldl
> > > > > > > > > > > > > > > > >> > > -lutil
> > > > > > > > > > > > > > > > >> > > -lm
> > > > > > > > > > > > > > > -Xlinker
> > > > > > > > > > > > > > > > >> > > -export-dynamic
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> > > However, in your config.log
file
> > > > > > > > > > > > > > > > >> > > it
> > > > > > > > > > > > > > > > >> > > looks
> > > > > > > > > > > > > > > > >> > > like
> > > > > > > > > > > > > > > > >> > > MET_PYTHON_LD was
> > > > > > > > > > > > > > > > >> actually
> > > > > > > > > > > > > > > > >> > > set to be "-
> > > > > > > > > > > > > > > > >> > > L/software/depot/anaconda-
> > > > > > > > > > > > > > > > >> > > 2.4.0/lib
> > > > > > > > > > > > > > > > >> > > -lpython2.7
> > > > > > > > > > > > > > > > -lpthread
> > > > > > > > > > > > > > > > >> > -ldl
> > > > > > > > > > > > > > > > >> > > -lutil -lm -Xlinker -export-
> > > > > > > > > > > > > > > > >> > > dynamic",
> > > > > > > > > > > > > > > > >> > > which
> > > > > > > > > > > > > > > > >> > > is
> > > > > > > > > > > > > > > > >> > > correct
> > > > > > > > > > > > > > > > >> > > because
> > > > > > > > > > > > > > you
> > > > > > > > > > > > > > > > >> need
> > > > > > > > > > > > > > > > >> > to
> > > > > > > > > > > > > > > > >> > > have that -L part in there, so
I
> > > > > > > > > > > > > > > > >> > > just
> > > > > > > > > > > > > > > > >> > > want
> > > > > > > > > > > > > > > > >> > > to
> > > > > > > > > > > > > > > > >> > > ensure
> > > > > > > > > > > > > > > > >> > > that
> > > > > > > > > > > > > > > > >> > > will
> > > > > > > > > > > > > > > stay
> > > > > > > > > > > > > > > > >> there
> > > > > > > > > > > > > > > > >> > > when you run configure again.
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> > > Thanks,
> > > > > > > > > > > > > > > > >> > > Julie
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> > > On Mon, May 6, 2019 at 5:09 PM
> > > > > > > > > > > > > > > > >> > > Ramos,
> > > > > > > > > > > > > > > > >> > > Mr.
> > > > > > > > > > > > > > > > >> > > Gregory,
> > > > > > > > > > > > > > > > >> > > Contractor,
> > > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > > >> > 7501.1
> > > > > > > > > > > > > > > > >> > > via RT <met_help at ucar.edu>
wrote:
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > > >> > > > <URL:
> > > > > > > > > > > > > > > > >> > > >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > > >> > > > Configure.log has no
meaningful
> > > > > > > > > > > > > > > > >> > > > info:
> > > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$ more
> > > > > > > > > > > > > > > > >> > > > configure.log
> > > > > > > > > > > > > > > > >> > > > -bash: [ramos at predict:
command
> > > > > > > > > > > > > > > > >> > > > not
> > > > > > > > > > > > > > > > >> > > > found
> > > > > > > > > > > > > > > > >> > > > [ramos at predict met-8.1]$
> > > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > > >> > > > -----Original Message-----
> > > > > > > > > > > > > > > > >> > > > From: John Halley Gotway via
RT
> > > > > > > > > > > > > > > > >> > > > [mailto:met_help at ucar.edu]
> > > > > > > > > > > > > > > > >> > > > Sent: Monday, May 6, 2019
4:03
> > > > > > > > > > > > > > > > >> > > > PM
> > > > > > > > > > > > > > > > >> > > > To: Ramos, Mr. Gregory,
> > > > > > > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > > > > > > >> > > > Code
> > > > > > > > > > > > > > > > >> > > > 7501.1
> > > > > > > > > > > > > > > > >> > > > Subject: Re: [rt.rap.ucar.edu
> > > > > > > > > > > > > > > > >> > > > #90091]
> > > > > > > > > > > > > > > > >> > > > Help
> > > > > > > > > > > > > > > > >> > > > regarding
> > > > > > > > > > > > > > > > >> > > > MET
> > > > > > > > > > > > > > > > >> > > > 8.1
> > > > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > > > > >> > > > Prestopnik
> > > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > > >> > > > Hi Greg,
> > > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > > >> > > > I'll go ahead and assign this
> > > > > > > > > > > > > > > > >> > > > ticket
> > > > > > > > > > > > > > > > >> > > > to
> > > > > > > > > > > > > > > > >> > > > Julie,
> > > > > > > > > > > > > > > > >> > > > and
> > > > > > > > > > > > > > > > >> > > > she
> > > > > > > > > > > > > > > > >> > > > should
> > > > > > > > > > > > > > be
> > > > > > > > > > > > > > > > >> > writing
> > > > > > > > > > > > > > > > >> > > > you back in the next couple
of
> > > > > > > > > > > > > > > > >> > > > days.
> > > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > > >> > > > I do know she'll want to see
> > > > > > > > > > > > > > > > >> > > > both
> > > > > > > > > > > > > > > > >> > > > the
> > > > > > > > > > > > > > > > >> > > > "configure.log"
> > > > > > > > > > > > > > > > >> > > > file you
> > > > > > > > > > > > > > > > >> > generated
> > > > > > > > > > > > > > > > >> > > as
> > > > > > > > > > > > > > > > >> > > > well as the "config.log" file
> > > > > > > > > > > > > > > > >> > > > from
> > > > > > > > > > > > > > > > >> > > > that
> > > > > > > > > > > > > > > > >> > > > same
> > > > > > > > > > > > > > > > >> > > > directory.
> > > > > > > > > > > > > > > > >> > > > So
> > > > > > > > > > > > > > > please
> > > > > > > > > > > > > > > > >> send
> > > > > > > > > > > > > > > > >> > > > those along when you get a
> > > > > > > > > > > > > > > > >> > > > chance.
> > > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > > >> > > > Thanks,
> > > > > > > > > > > > > > > > >> > > > John
> > > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > > >> > > > On Mon, May 6, 2019 at 3:47
PM
> > > > > > > > > > > > > > > > >> > > > Ramos,
> > > > > > > > > > > > > > > > >> > > > Mr.
> > > > > > > > > > > > > > > > >> > > > Gregory,
> > > > > > > > > > > > > > > > >> > > > Contractor,
> > > > > > > > > > > > > > > > Code
> > > > > > > > > > > > > > > > >> > > 7501.1
> > > > > > > > > > > > > > > > >> > > > via RT <met_help at ucar.edu>
> > > > > > > > > > > > > > > > >> > > > wrote:
> > > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > > >> > > > > Mon May 06 15:47:15 2019:
> > > > > > > > > > > > > > > > >> > > > > Request
> > > > > > > > > > > > > > > > >> > > > > 90091
> > > > > > > > > > > > > > > > >> > > > > was
> > > > > > > > > > > > > > > > >> > > > > acted
> > > > > > > > > > > > > > > > >> > > > > upon.
> > > > > > > > > > > > > > > > >> > > > > Transaction: Ticket created
by
> > > > > > > > > > > > > > Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > > > > > >> > > > > Queue: met_help
> > > > > > > > > > > > > > > > >> > > > > Subject: Help regarding MET
> > > > > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > > > > >> > > > > Julie
> > > > > > > > > > > > > > > > >> > > > > Prestopnik
> > > > > > > > > > > > > > > > >> > > > > Owner: Nobody
> > > > > > > > > > > > > > > > >> > > > > Requestors:
> > > > > > > > > > > > > > > > >> > > > >
Greg.Ramos.ctr at nrlmry.navy.mil
> > > > > > > > > > > > > > > > >> > > > > Status: new
> > > > > > > > > > > > > > > > >> > > > > Ticket <URL:
> > > > > > > > > > > > > > > > >> >
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=90091
> > > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > > >> > > > > Julie helped me compiled
8.0
> > > > > > > > > > > > > > > > >> > > > > using
> > > > > > > > > > > > > > > > >> > > > > gcc
> > > > > > > > > > > > > > > > >> > > > > 6.3.0
> > > > > > > > > > > > > > > > >> > > > > and
> > > > > > > > > > > > > > > > >> > > > > Anaconda
> > > > > > > > > > > > > > > 2.4.0.
> > > > > > > > > > > > > > > > >> The
> > > > > > > > > > > > > > > > >> > > user
> > > > > > > > > > > > > > > > >> > > > > asked for 8.1. I took notes
> > > > > > > > > > > > > > > > >> > > > > last
> > > > > > > > > > > > > > > > >> > > > > time,
> > > > > > > > > > > > > > > > >> > > > > but
> > > > > > > > > > > > > > > > >> > > > > running
> > > > > > > > > > > > > > > > >> > > > > into
> > > > > > > > > > > > > > > > problems:
> > > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > > >> > > > > MET Configuration
settings...
> > > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > > >> > > > >
MET_FONT_DIR=/software/depot/met-
> > > > > > > > > > > > > > > > >> > > > > 8.1/fonts
> > > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > MET_FREETYPEINC=/software/depot/met-
> > > > > > > > > > > > > > > > 8.1/external_libs/include/freetype2
> > > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > > >> > MET_CAIROINC=/software/depot/met-
> > > > > > > > > > > > > > > > >> > 8.1/external_libs/include/cairo
> > > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > > >> > > > >
MET_GSL=/software/depot/met-
> > > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > > >> > MET_PYTHON_CC=-
> > > > > > > > > > > > > > > > >> > I/software/depot/anaconda-
> > > > > > > > > > > > > > > > >> > 2.4.0/include/python2.7
> > > > > > > > > > > > > > > > >> > > > > -I/software/depot/anaconda-
> > > > > > > > > > > > > > > > >> > > > > 2.4.0/include/python2.7
> > > > > > > > > > > > > > > > >> > -fno-strict-aliasing
> > > > > > > > > > > > > > > > >> > > > > -m64 -fPIC -DNDEBUG -g
-fwrapv
> > > > > > > > > > > > > > > > >> > > > > -O3
> > > > > > > > > > > > > > > > >> > > > > -Wall
> > > > > > > > > > > > > > > > >> > > > > -Wstrict-
> > > > > > > > > > > > > > > > >> > > > > prototypes
> > > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > > >> > > > >
MET_HDF=/software/depot/met-
> > > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > MET_TARBALL=/software/depot/met-
> > > > > > > > > > > > > > 8.1/tar_files//software/depot/met-
> > > > > > > > > > > > > > 8.1/tar_files.tar
> > > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > > >> > > > >
MET_HDFEOS=/software/depot/met-
> > > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > > >> > > > >
MET_NETCDF=/software/depot/met-
> > > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > MET_FREETYPELIB=/software/depot/met-
> > > > > > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > MET_CAIROLIB=/software/depot/met-
> > > > > > > > > > > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > > > >> > > > > export MET_PYTHON_LD=-
> > > > > > > > > > > > > > > > >> > > > > lpython2.7
> > > > > > > > > > > > > > > > >> > > > > -lpthread
> > > > > > > > > > > > > > > > >> > > > > -ldl
> > > > > > > > > > > > > > > > >> > > > > -lutil
> > > > > > > > > > > > > > > > >> > > > > -lm
> > > > > > > > > > > > > > > > >> -Xlinker
> > > > > > > > > > > > > > > > >> > > > > -export-dynamic
> > > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > > >> > > > >
MET_GRIB2C=/software/depot/met-
> > > > > > > > > > > > > > > > >> > > > > 8.1/external_libs
> > > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > > >> > > > >
MET_SUBDIR=/software/depot/met-
> > > > > > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > > > > >> > > > > export
> > > > > > > > > > > > > > > > >> > > > >
MET_BUFRLIB=/software/depot/met-
> > > > > > > > > > > > > > > > >> > > > > 8.1/external_libs/lib
> > > > > > > > > > > > > > > > >> > > > > cd /software/depot/met-
> > > > > > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > > > > >> > > > > ./configure
> > > > > > > > > > > > > > > > >> > > > >
--prefix=/software/depot/met-
> > > > > > > > > > > > > > > > >> > > > > 8.1/met-
> > > > > > > > > > > > > > > > >> > > > > 8.1
> > > > > > > > > > > > > > > > >> --enable-grib2
> > > > > > > > > > > > > > > > >> > > > > --enable-modis --enable-
> > > > > > > > > > > > > > > > >> > > > > mode_graphics
> > > > > > > > > > > > > > > > >> > > > > --enable-
> > > > > > > > > > > > > > > > >> > > > > lidar2nc >
> > > > > > > > > > > > > > > > >> > > configure.log
> > > > > > > > > > > > > > > > >> > > > > 2> &1
> > > > > > > > > > > > > > > > >> > > > > configure returned with
non-
> > > > > > > > > > > > > > > > >> > > > > zero
> > > > > > > > > > > > > > > > >> > > > > (127)
> > > > > > > > > > > > > > > > >> > > > > status
> > > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > > >> > > > >
> > > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > > >> > > >
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> > >
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > >> >
> > > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > > >>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > >
> > >
> > >
> > >
>
>
>
------------------------------------------------
More information about the Met_help
mailing list