[Met_help] [rt.rap.ucar.edu #88867] History for run plot_tcmpr.R on Jet

John Halley Gotway via RT met_help at ucar.edu
Tue Jul 9 12:07:01 MDT 2019 

----------------------------------------------------------------
  Initial Request
----------------------------------------------------------------

Hi,

It is Man Zhang working at GMTB. I am running MET-TC on Jet for EMC Physics
Test results. However, I got error message as:

running

  '/usr/lib64/R/bin/R --slave --no-restore --file=plot_tcmpr.R --args
-lookin tc_pairs_AL.tcst -dep TK_ERR -lead
0,6,12,18,24,30,36,42,48,54,60,66,72,78,84,90,96,102,108,114,120 -plot MEAN
-ylab Track Error (nm)'


/usr/lib64/R/bin/exec/R: symbol lookup error:
/contrib/anaconda/2.0.1/lib/libreadline.so.6: undefined symbol: PC


my module environment on Jet is:


Currently Loaded Modules:

  1) newdefaults    5) szip/2.1          9) wgrib/1.8.1.0b  13) hpss
    17) w3nco/v2.0.6  21) contrib

  2) grads/2.0.1    6) hdf5/1.8.9       10) wgrib2/0.2.0.1  14) nco/4.1.0
    18) bacio/v2.0.2  22) anaconda/2.0.1

  3) cairo/1.14.2   7) netcdf4/4.2.1.1  11) xxdiff/3.2.Z1   15)
nemsio/v2.2.2  19) intel/14.0.3

  4) ncl/6.5.0      8) ncview/2.1.1     12) rocoto/1.2.4    16)
w3emc/v2.2.0   20) met/8.0


Thank you in advance

Man


----------------------------------------------------------------
  Complete Ticket History
----------------------------------------------------------------

Subject: run plot_tcmpr.R on Jet
From: John Halley Gotway
Time: Wed Feb 13 10:40:41 2019

Hi Man,

I just logged on to jet to take a look at this.  Thanks for sending
the
command you ran and the error message you're seeing.  Can you please
tell
me where you're running this command?  In what directory does your
data
live on jet?

Thanks,
John

On Mon, Feb 11, 2019 at 1:11 PM Man Zhang - NOAA Affiliate via RT <
met_help at ucar.edu> wrote:

>
> Mon Feb 11 13:10:35 2019: Request 88867 was acted upon.
> Transaction: Ticket created by man.zhang at noaa.gov
>        Queue: met_help
>      Subject: run plot_tcmpr.R on Jet
>        Owner: Nobody
>   Requestors: man.zhang at noaa.gov
>       Status: new
>  Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=88867 >
>
>
> Hi,
>
> It is Man Zhang working at GMTB. I am running MET-TC on Jet for EMC
Physics
> Test results. However, I got error message as:
>
> running
>
>   '/usr/lib64/R/bin/R --slave --no-restore --file=plot_tcmpr.R
--args
> -lookin tc_pairs_AL.tcst -dep TK_ERR -lead
> 0,6,12,18,24,30,36,42,48,54,60,66,72,78,84,90,96,102,108,114,120
-plot MEAN
> -ylab Track Error (nm)'
>
>
> /usr/lib64/R/bin/exec/R: symbol lookup error:
> /contrib/anaconda/2.0.1/lib/libreadline.so.6: undefined symbol: PC
>
>
> my module environment on Jet is:
>
>
> Currently Loaded Modules:
>
>   1) newdefaults    5) szip/2.1          9) wgrib/1.8.1.0b  13) hpss
>     17) w3nco/v2.0.6  21) contrib
>
>   2) grads/2.0.1    6) hdf5/1.8.9       10) wgrib2/0.2.0.1  14)
nco/4.1.0
>     18) bacio/v2.0.2  22) anaconda/2.0.1
>
>   3) cairo/1.14.2   7) netcdf4/4.2.1.1  11) xxdiff/3.2.Z1   15)
> nemsio/v2.2.2  19) intel/14.0.3
>
>   4) ncl/6.5.0      8) ncview/2.1.1     12) rocoto/1.2.4    16)
> w3emc/v2.2.0   20) met/8.0
>
>
> Thank you in advance
>
> Man
>
>

------------------------------------------------
Subject: run plot_tcmpr.R on Jet
From: Man Zhang - NOAA Affiliate
Time: Wed Feb 13 10:46:00 2019

> /mnt/lfs3/projects/hfv3gfs/Man.Zhang/_MET_TC

At the meantime, I am using MET-8.0 on theia and it works fine.
Man

> On Feb 13, 2019, at 10:40 AM, John Halley Gotway via RT
<met_help at ucar.edu> wrote:
>
> Hi Man,
>
> I just logged on to jet to take a look at this.  Thanks for sending
the
> command you ran and the error message you're seeing.  Can you please
tell
> me where you're running this command?  In what directory does your
data
> live on jet?
>
> Thanks,
> John
>
> On Mon, Feb 11, 2019 at 1:11 PM Man Zhang - NOAA Affiliate via RT <
> met_help at ucar.edu> wrote:
>
>>
>> Mon Feb 11 13:10:35 2019: Request 88867 was acted upon.
>> Transaction: Ticket created by man.zhang at noaa.gov
>>       Queue: met_help
>>     Subject: run plot_tcmpr.R on Jet
>>       Owner: Nobody
>>  Requestors: man.zhang at noaa.gov
>>      Status: new
>> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=88867 >
>>
>>
>> Hi,
>>
>> It is Man Zhang working at GMTB. I am running MET-TC on Jet for EMC
Physics
>> Test results. However, I got error message as:
>>
>> running
>>
>>  '/usr/lib64/R/bin/R --slave --no-restore --file=plot_tcmpr.R
--args
>> -lookin tc_pairs_AL.tcst -dep TK_ERR -lead
>> 0,6,12,18,24,30,36,42,48,54,60,66,72,78,84,90,96,102,108,114,120
-plot MEAN
>> -ylab Track Error (nm)'
>>
>>
>> /usr/lib64/R/bin/exec/R: symbol lookup error:
>> /contrib/anaconda/2.0.1/lib/libreadline.so.6: undefined symbol: PC
>>
>>
>> my module environment on Jet is:
>>
>>
>> Currently Loaded Modules:
>>
>>  1) newdefaults    5) szip/2.1          9) wgrib/1.8.1.0b  13) hpss
>>    17) w3nco/v2.0.6  21) contrib
>>
>>  2) grads/2.0.1    6) hdf5/1.8.9       10) wgrib2/0.2.0.1  14)
nco/4.1.0
>>    18) bacio/v2.0.2  22) anaconda/2.0.1
>>
>>  3) cairo/1.14.2   7) netcdf4/4.2.1.1  11) xxdiff/3.2.Z1   15)
>> nemsio/v2.2.2  19) intel/14.0.3
>>
>>  4) ncl/6.5.0      8) ncview/2.1.1     12) rocoto/1.2.4    16)
>> w3emc/v2.2.0   20) met/8.0
>>
>>
>> Thank you in advance
>>
>> Man
>>
>>
>


------------------------------------------------
Subject: run plot_tcmpr.R on Jet
From: John Halley Gotway
Time: Wed Feb 13 11:49:47 2019

Man (and Julie),

Thanks for pointing out this configuration issue on jet.  I've
identified
the problem but don't know how to fix it yet.

I've cc'ed Julie Prestopnik on this email since she's the person who
compiles met-8.0 on various platforms.

Here's the issue:
(1) Log on to jet and run *R* on the command line with no problems.
(2) Load met-8.0 using:

*   module use /lfs1/projects/dtc-hurr/MET/MET_releases/modulefiles
module load met/8.0*
(3) Try running *R* again and you get this runtime linker error:
*   /usr/lib64/R/bin/exec/R: symbol lookup error:
/contrib/anaconda/2.0.1/lib/libreadline.so.6: undefined symbol: PC*

The problem is in the module file on line 19:
*    19 prepend-path LD_LIBRARY_PATH
$base/external_libs/lib:/contrib/anaconda/2.0.1/lib*

Whenever */contrib/anaconda/2.0.1/lib* is in the LD_LIBRARY_PATH, R
isn't
happy.  But we need it in there to make MET happy.  Otherwise, you get
this
linker error:


*[John.H.Gotway at fe6 ~]$ grid_statgrid_stat: error while loading shared
libraries: libpython2.7.so.1.0: cannot open shared object file: No
such
file or directory*

Julie, any thoughts?  Perhaps there's another version of python we
could
try linking against?

Thanks,
John

On Wed, Feb 13, 2019 at 10:46 AM Man Zhang - NOAA Affiliate via RT <
met_help at ucar.edu> wrote:

>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=88867 >
>
> > /mnt/lfs3/projects/hfv3gfs/Man.Zhang/_MET_TC
>
> At the meantime, I am using MET-8.0 on theia and it works fine.
> Man
>
> > On Feb 13, 2019, at 10:40 AM, John Halley Gotway via RT <
> met_help at ucar.edu> wrote:
> >
> > Hi Man,
> >
> > I just logged on to jet to take a look at this.  Thanks for
sending the
> > command you ran and the error message you're seeing.  Can you
please tell
> > me where you're running this command?  In what directory does your
data
> > live on jet?
> >
> > Thanks,
> > John
> >
> > On Mon, Feb 11, 2019 at 1:11 PM Man Zhang - NOAA Affiliate via RT
<
> > met_help at ucar.edu> wrote:
> >
> >>
> >> Mon Feb 11 13:10:35 2019: Request 88867 was acted upon.
> >> Transaction: Ticket created by man.zhang at noaa.gov
> >>       Queue: met_help
> >>     Subject: run plot_tcmpr.R on Jet
> >>       Owner: Nobody
> >>  Requestors: man.zhang at noaa.gov
> >>      Status: new
> >> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=88867 >
> >>
> >>
> >> Hi,
> >>
> >> It is Man Zhang working at GMTB. I am running MET-TC on Jet for
EMC
> Physics
> >> Test results. However, I got error message as:
> >>
> >> running
> >>
> >>  '/usr/lib64/R/bin/R --slave --no-restore --file=plot_tcmpr.R
--args
> >> -lookin tc_pairs_AL.tcst -dep TK_ERR -lead
> >> 0,6,12,18,24,30,36,42,48,54,60,66,72,78,84,90,96,102,108,114,120
-plot
> MEAN
> >> -ylab Track Error (nm)'
> >>
> >>
> >> /usr/lib64/R/bin/exec/R: symbol lookup error:
> >> /contrib/anaconda/2.0.1/lib/libreadline.so.6: undefined symbol:
PC
> >>
> >>
> >> my module environment on Jet is:
> >>
> >>
> >> Currently Loaded Modules:
> >>
> >>  1) newdefaults    5) szip/2.1          9) wgrib/1.8.1.0b  13)
hpss
> >>    17) w3nco/v2.0.6  21) contrib
> >>
> >>  2) grads/2.0.1    6) hdf5/1.8.9       10) wgrib2/0.2.0.1  14)
> nco/4.1.0
> >>    18) bacio/v2.0.2  22) anaconda/2.0.1
> >>
> >>  3) cairo/1.14.2   7) netcdf4/4.2.1.1  11) xxdiff/3.2.Z1   15)
> >> nemsio/v2.2.2  19) intel/14.0.3
> >>
> >>  4) ncl/6.5.0      8) ncview/2.1.1     12) rocoto/1.2.4    16)
> >> w3emc/v2.2.0   20) met/8.0
> >>
> >>
> >> Thank you in advance
> >>
> >> Man
> >>
> >>
> >
>
>
>

------------------------------------------------
Subject: Re: [rt.rap.ucar.edu #88867] run plot_tcmpr.R on Jet
From: Man Zhang - NOAA Affiliate
Time: Wed Feb 13 11:53:24 2019

Thanks for your quick response.
Take you time. MET-8.0 on Theia is doing all the magic for us now.

Man

> On Feb 13, 2019, at 11:49 AM, John Halley Gotway via RT
<met_help at ucar.edu> wrote:
>
> Man (and Julie),
>
> Thanks for pointing out this configuration issue on jet.  I've
identified
> the problem but don't know how to fix it yet.
>
> I've cc'ed Julie Prestopnik on this email since she's the person who
> compiles met-8.0 on various platforms.
>
> Here's the issue:
> (1) Log on to jet and run *R* on the command line with no problems.
> (2) Load met-8.0 using:
>
> *   module use /lfs1/projects/dtc-hurr/MET/MET_releases/modulefiles
> module load met/8.0*
> (3) Try running *R* again and you get this runtime linker error:
> *   /usr/lib64/R/bin/exec/R: symbol lookup error:
> /contrib/anaconda/2.0.1/lib/libreadline.so.6: undefined symbol: PC*
>
> The problem is in the module file on line 19:
> *    19 prepend-path LD_LIBRARY_PATH
> $base/external_libs/lib:/contrib/anaconda/2.0.1/lib*
>
> Whenever */contrib/anaconda/2.0.1/lib* is in the LD_LIBRARY_PATH, R
isn't
> happy.  But we need it in there to make MET happy.  Otherwise, you
get this
> linker error:
>
>
> *[John.H.Gotway at fe6 ~]$ grid_statgrid_stat: error while loading
shared
> libraries: libpython2.7.so.1.0: cannot open shared object file: No
such
> file or directory*
>
> Julie, any thoughts?  Perhaps there's another version of python we
could
> try linking against?
>
> Thanks,
> John
>
> On Wed, Feb 13, 2019 at 10:46 AM Man Zhang - NOAA Affiliate via RT <
> met_help at ucar.edu> wrote:
>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=88867 >
>>
>>> /mnt/lfs3/projects/hfv3gfs/Man.Zhang/_MET_TC
>>
>> At the meantime, I am using MET-8.0 on theia and it works fine.
>> Man
>>
>>> On Feb 13, 2019, at 10:40 AM, John Halley Gotway via RT <
>> met_help at ucar.edu> wrote:
>>>
>>> Hi Man,
>>>
>>> I just logged on to jet to take a look at this.  Thanks for
sending the
>>> command you ran and the error message you're seeing.  Can you
please tell
>>> me where you're running this command?  In what directory does your
data
>>> live on jet?
>>>
>>> Thanks,
>>> John
>>>
>>> On Mon, Feb 11, 2019 at 1:11 PM Man Zhang - NOAA Affiliate via RT
<
>>> met_help at ucar.edu> wrote:
>>>
>>>>
>>>> Mon Feb 11 13:10:35 2019: Request 88867 was acted upon.
>>>> Transaction: Ticket created by man.zhang at noaa.gov
>>>>      Queue: met_help
>>>>    Subject: run plot_tcmpr.R on Jet
>>>>      Owner: Nobody
>>>> Requestors: man.zhang at noaa.gov
>>>>     Status: new
>>>> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=88867 >
>>>>
>>>>
>>>> Hi,
>>>>
>>>> It is Man Zhang working at GMTB. I am running MET-TC on Jet for
EMC
>> Physics
>>>> Test results. However, I got error message as:
>>>>
>>>> running
>>>>
>>>> '/usr/lib64/R/bin/R --slave --no-restore --file=plot_tcmpr.R
--args
>>>> -lookin tc_pairs_AL.tcst -dep TK_ERR -lead
>>>> 0,6,12,18,24,30,36,42,48,54,60,66,72,78,84,90,96,102,108,114,120
-plot
>> MEAN
>>>> -ylab Track Error (nm)'
>>>>
>>>>
>>>> /usr/lib64/R/bin/exec/R: symbol lookup error:
>>>> /contrib/anaconda/2.0.1/lib/libreadline.so.6: undefined symbol:
PC
>>>>
>>>>
>>>> my module environment on Jet is:
>>>>
>>>>
>>>> Currently Loaded Modules:
>>>>
>>>> 1) newdefaults    5) szip/2.1          9) wgrib/1.8.1.0b  13)
hpss
>>>>   17) w3nco/v2.0.6  21) contrib
>>>>
>>>> 2) grads/2.0.1    6) hdf5/1.8.9       10) wgrib2/0.2.0.1  14)
>> nco/4.1.0
>>>>   18) bacio/v2.0.2  22) anaconda/2.0.1
>>>>
>>>> 3) cairo/1.14.2   7) netcdf4/4.2.1.1  11) xxdiff/3.2.Z1   15)
>>>> nemsio/v2.2.2  19) intel/14.0.3
>>>>
>>>> 4) ncl/6.5.0      8) ncview/2.1.1     12) rocoto/1.2.4    16)
>>>> w3emc/v2.2.0   20) met/8.0
>>>>
>>>>
>>>> Thank you in advance
>>>>
>>>> Man
>>>>
>>>>
>>>
>>
>>
>>
>



------------------------------------------------
Subject: run plot_tcmpr.R on Jet
From: Julie Prestopnik
Time: Wed Feb 13 15:02:00 2019

Hi John.

I don't have a good solution for this issue.  After asking around,
that was
the only version of Python 2.7 that I could find on jet.  I'll
continue
thinking about a possible solution though.

Julie

On Wed, Feb 13, 2019 at 11:49 AM John Halley Gotway <johnhg at ucar.edu>
wrote:

> Man (and Julie),
>
> Thanks for pointing out this configuration issue on jet.  I've
identified
> the problem but don't know how to fix it yet.
>
> I've cc'ed Julie Prestopnik on this email since she's the person who
> compiles met-8.0 on various platforms.
>
> Here's the issue:
> (1) Log on to jet and run *R* on the command line with no problems.
> (2) Load met-8.0 using:
>
> *   module use /lfs1/projects/dtc-hurr/MET/MET_releases/modulefiles
> module load met/8.0*
> (3) Try running *R* again and you get this runtime linker error:
> *   /usr/lib64/R/bin/exec/R: symbol lookup error:
> /contrib/anaconda/2.0.1/lib/libreadline.so.6: undefined symbol: PC*
>
> The problem is in the module file on line 19:
> *    19 prepend-path LD_LIBRARY_PATH
> $base/external_libs/lib:/contrib/anaconda/2.0.1/lib*
>
> Whenever */contrib/anaconda/2.0.1/lib* is in the LD_LIBRARY_PATH, R
isn't
> happy.  But we need it in there to make MET happy.  Otherwise, you
get this
> linker error:
>
>
> *[John.H.Gotway at fe6 ~]$ grid_statgrid_stat: error while loading
shared
> libraries: libpython2.7.so.1.0: cannot open shared object file: No
such
> file or directory*
>
> Julie, any thoughts?  Perhaps there's another version of python we
could
> try linking against?
>
> Thanks,
> John
>
> On Wed, Feb 13, 2019 at 10:46 AM Man Zhang - NOAA Affiliate via RT <
> met_help at ucar.edu> wrote:
>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=88867 >
>>
>> > /mnt/lfs3/projects/hfv3gfs/Man.Zhang/_MET_TC
>>
>> At the meantime, I am using MET-8.0 on theia and it works fine.
>> Man
>>
>> > On Feb 13, 2019, at 10:40 AM, John Halley Gotway via RT <
>> met_help at ucar.edu> wrote:
>> >
>> > Hi Man,
>> >
>> > I just logged on to jet to take a look at this.  Thanks for
sending the
>> > command you ran and the error message you're seeing.  Can you
please
>> tell
>> > me where you're running this command?  In what directory does
your data
>> > live on jet?
>> >
>> > Thanks,
>> > John
>> >
>> > On Mon, Feb 11, 2019 at 1:11 PM Man Zhang - NOAA Affiliate via RT
<
>> > met_help at ucar.edu> wrote:
>> >
>> >>
>> >> Mon Feb 11 13:10:35 2019: Request 88867 was acted upon.
>> >> Transaction: Ticket created by man.zhang at noaa.gov
>> >>       Queue: met_help
>> >>     Subject: run plot_tcmpr.R on Jet
>> >>       Owner: Nobody
>> >>  Requestors: man.zhang at noaa.gov
>> >>      Status: new
>> >> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=88867 >
>> >>
>> >>
>> >> Hi,
>> >>
>> >> It is Man Zhang working at GMTB. I am running MET-TC on Jet for
EMC
>> Physics
>> >> Test results. However, I got error message as:
>> >>
>> >> running
>> >>
>> >>  '/usr/lib64/R/bin/R --slave --no-restore --file=plot_tcmpr.R
--args
>> >> -lookin tc_pairs_AL.tcst -dep TK_ERR -lead
>> >> 0,6,12,18,24,30,36,42,48,54,60,66,72,78,84,90,96,102,108,114,120
-plot
>> MEAN
>> >> -ylab Track Error (nm)'
>> >>
>> >>
>> >> /usr/lib64/R/bin/exec/R: symbol lookup error:
>> >> /contrib/anaconda/2.0.1/lib/libreadline.so.6: undefined symbol:
PC
>> >>
>> >>
>> >> my module environment on Jet is:
>> >>
>> >>
>> >> Currently Loaded Modules:
>> >>
>> >>  1) newdefaults    5) szip/2.1          9) wgrib/1.8.1.0b  13)
hpss
>> >>    17) w3nco/v2.0.6  21) contrib
>> >>
>> >>  2) grads/2.0.1    6) hdf5/1.8.9       10) wgrib2/0.2.0.1  14)
>> nco/4.1.0
>> >>    18) bacio/v2.0.2  22) anaconda/2.0.1
>> >>
>> >>  3) cairo/1.14.2   7) netcdf4/4.2.1.1  11) xxdiff/3.2.Z1   15)
>> >> nemsio/v2.2.2  19) intel/14.0.3
>> >>
>> >>  4) ncl/6.5.0      8) ncview/2.1.1     12) rocoto/1.2.4    16)
>> >> w3emc/v2.2.0   20) met/8.0
>> >>
>> >>
>> >> Thank you in advance
>> >>
>> >> Man
>> >>
>> >>
>> >
>>
>>
>>

------------------------------------------------
Subject: run plot_tcmpr.R on Jet
From: John Halley Gotway
Time: Thu Feb 14 11:55:09 2019

Julie,

Just so that we don't lose track of this, I create a JiRA ticket for
this
issue:
   https://sdg/jira/browse/MET-1096

As Man points out, this isn't immediately critical, but we do need to
find
a fix eventually.

Thanks,
John

On Wed, Feb 13, 2019 at 3:02 PM Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:

>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=88867 >
>
> Hi John.
>
> I don't have a good solution for this issue.  After asking around,
that was
> the only version of Python 2.7 that I could find on jet.  I'll
continue
> thinking about a possible solution though.
>
> Julie
>
> On Wed, Feb 13, 2019 at 11:49 AM John Halley Gotway
<johnhg at ucar.edu>
> wrote:
>
> > Man (and Julie),
> >
> > Thanks for pointing out this configuration issue on jet.  I've
identified
> > the problem but don't know how to fix it yet.
> >
> > I've cc'ed Julie Prestopnik on this email since she's the person
who
> > compiles met-8.0 on various platforms.
> >
> > Here's the issue:
> > (1) Log on to jet and run *R* on the command line with no
problems.
> > (2) Load met-8.0 using:
> >
> > *   module use /lfs1/projects/dtc-
hurr/MET/MET_releases/modulefiles
> > module load met/8.0*
> > (3) Try running *R* again and you get this runtime linker error:
> > *   /usr/lib64/R/bin/exec/R: symbol lookup error:
> > /contrib/anaconda/2.0.1/lib/libreadline.so.6: undefined symbol:
PC*
> >
> > The problem is in the module file on line 19:
> > *    19 prepend-path LD_LIBRARY_PATH
> > $base/external_libs/lib:/contrib/anaconda/2.0.1/lib*
> >
> > Whenever */contrib/anaconda/2.0.1/lib* is in the LD_LIBRARY_PATH,
R isn't
> > happy.  But we need it in there to make MET happy.  Otherwise, you
get
> this
> > linker error:
> >
> >
> > *[John.H.Gotway at fe6 ~]$ grid_statgrid_stat: error while loading
shared
> > libraries: libpython2.7.so.1.0: cannot open shared object file: No
such
> > file or directory*
> >
> > Julie, any thoughts?  Perhaps there's another version of python we
could
> > try linking against?
> >
> > Thanks,
> > John
> >
> > On Wed, Feb 13, 2019 at 10:46 AM Man Zhang - NOAA Affiliate via RT
<
> > met_help at ucar.edu> wrote:
> >
> >>
> >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=88867 >
> >>
> >> > /mnt/lfs3/projects/hfv3gfs/Man.Zhang/_MET_TC
> >>
> >> At the meantime, I am using MET-8.0 on theia and it works fine.
> >> Man
> >>
> >> > On Feb 13, 2019, at 10:40 AM, John Halley Gotway via RT <
> >> met_help at ucar.edu> wrote:
> >> >
> >> > Hi Man,
> >> >
> >> > I just logged on to jet to take a look at this.  Thanks for
sending
> the
> >> > command you ran and the error message you're seeing.  Can you
please
> >> tell
> >> > me where you're running this command?  In what directory does
your
> data
> >> > live on jet?
> >> >
> >> > Thanks,
> >> > John
> >> >
> >> > On Mon, Feb 11, 2019 at 1:11 PM Man Zhang - NOAA Affiliate via
RT <
> >> > met_help at ucar.edu> wrote:
> >> >
> >> >>
> >> >> Mon Feb 11 13:10:35 2019: Request 88867 was acted upon.
> >> >> Transaction: Ticket created by man.zhang at noaa.gov
> >> >>       Queue: met_help
> >> >>     Subject: run plot_tcmpr.R on Jet
> >> >>       Owner: Nobody
> >> >>  Requestors: man.zhang at noaa.gov
> >> >>      Status: new
> >> >> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=88867
> >
> >> >>
> >> >>
> >> >> Hi,
> >> >>
> >> >> It is Man Zhang working at GMTB. I am running MET-TC on Jet
for EMC
> >> Physics
> >> >> Test results. However, I got error message as:
> >> >>
> >> >> running
> >> >>
> >> >>  '/usr/lib64/R/bin/R --slave --no-restore --file=plot_tcmpr.R
--args
> >> >> -lookin tc_pairs_AL.tcst -dep TK_ERR -lead
> >> >>
0,6,12,18,24,30,36,42,48,54,60,66,72,78,84,90,96,102,108,114,120
> -plot
> >> MEAN
> >> >> -ylab Track Error (nm)'
> >> >>
> >> >>
> >> >> /usr/lib64/R/bin/exec/R: symbol lookup error:
> >> >> /contrib/anaconda/2.0.1/lib/libreadline.so.6: undefined
symbol: PC
> >> >>
> >> >>
> >> >> my module environment on Jet is:
> >> >>
> >> >>
> >> >> Currently Loaded Modules:
> >> >>
> >> >>  1) newdefaults    5) szip/2.1          9) wgrib/1.8.1.0b  13)
hpss
> >> >>    17) w3nco/v2.0.6  21) contrib
> >> >>
> >> >>  2) grads/2.0.1    6) hdf5/1.8.9       10) wgrib2/0.2.0.1  14)
> >> nco/4.1.0
> >> >>    18) bacio/v2.0.2  22) anaconda/2.0.1
> >> >>
> >> >>  3) cairo/1.14.2   7) netcdf4/4.2.1.1  11) xxdiff/3.2.Z1   15)
> >> >> nemsio/v2.2.2  19) intel/14.0.3
> >> >>
> >> >>  4) ncl/6.5.0      8) ncview/2.1.1     12) rocoto/1.2.4    16)
> >> >> w3emc/v2.2.0   20) met/8.0
> >> >>
> >> >>
> >> >> Thank you in advance
> >> >>
> >> >> Man
> >> >>
> >> >>
> >> >
> >>
> >>
> >>
>
>

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