[Met_help] [rt.rap.ucar.edu #88146] History for Fwd: MET 8.0 Installation Help
Julie Prestopnik via RT
met_help at ucar.edu
Mon Feb 11 10:10:25 MST 2019
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Julie,
I'm forwarding to met_help a message that Taylor sent yesterday directly to
Tara, Brian, Paul, and myself.
Taylor, please respond to met_help at ucar.edu to make sure the correspondence
makes it into the ticketing system. And you can CC whomever you'd like on
those messages.
Thanks,
John
---------- Forwarded message ---------
From: Taylor Mandelbaum <taylor.mandelbaum at stonybrook.edu>
Date: Wed, Dec 12, 2018 at 6:09 PM
Subject: Re: MET 8.0 Installation Help
To: <johnhg at ucar.edu>
Cc: <jensen at ucar.edu>, Brian Colle <brian.colle at gmail.com>, <
pkucera at ucar.edu>
Hey John, Julie,
Thanks for the replies earlier and apologies for the late reply. I included
the necessary env vars in my bashrc:
# .bashrc
# Source global definitions
if [ -f /etc/bashrc ]; then
. /etc/bashrc
fi
# User specific aliases and functions
module load gcc
module load torque
module load python/3.5.2
module load netcdf/intel/64/4.3.3.1
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH
:/opt/intel-soft/lib:/usr/lib64:/usr/local/lib:/home/msienk/lib
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH
:/cm/shared/apps/python/3.5.2/lib/python3.5/site-packages/cartopy
# Needed for MET
export MET_BUFRLIB=/D2/ryan/BUFRLIB
export MET_GRIB2CINC=/D2/ryan/g2clib-1.6.0
export MET_GRIB2CLIB=/D2/ryan/g2clib-1.6.0
export MET_GSL=/D2/ryan/gsl-2.3
export MET_CAIROINC=/D2/ryan/cairo-1.12.0/include/cairo
export MET_CAIROLIB=/D2/ryan/cairo-1.12.0/lib/cairo
export MET_FREETYPE=/D2/ryan/freetype-2.6.4
export MET_FONT_DIR=/D2/ryan/fonts
export MET_NETCDF=/opt/netcdf-gfortran
export MET_NETCDFINC=/opt/netcdf-gfortran/include
export MET_NETCDFLIB=/opt/netcdf-gfortran/lib
But am running into an error when I try to compile it now:
checking whether the C++ compiler works... no
configure: error: in `/home/taylorm/MET8/met-8.0_bugfix':
configure: error: C++ compiler cannot create executables
Attached the config.log if it helps.
Do I need to add another environment variable or find the path to a C++
compiler on the computer?
Thanks again. We're working on getting the source code built so anyone on
the hpc can access it, but in the mean time I'm loading it user-side.
On Tue, Nov 27, 2018 at 7:32 PM John Halley Gotway <johnhg at ucar.edu> wrote:
> Hi all,
>
> I just added 8 examples of using python scripts to read data and pass it
> via memory to MET to this page:
> https://dtcenter.org/met/users/downloads/analysis_scripts.php
>
> See the section labelled "Python Scripts".
>
> The examples include reading input ASCII, binary, and NetCDF data files.
> All examples are just a call to MET's plot_data_plane tool and include the
> resulting image. But once that's working, the same python script can be
> used to hand data off to the other MET tools.
>
> Hope this helps.
>
> Thanks,
> John
>
>
> On Tue, Nov 27, 2018 at 2:43 PM Tara Jensen <jensen at ucar.edu> wrote:
>
>> Hi Brian,
>>
>> John is going to work on putting the examples on our MET website for all
>> to take advantage of... He'll reply to this email when it's done.
>>
>> Hope that'll work and Cheers, Tara
>>
>> On Mon, Nov 26, 2018 at 5:38 PM Brian Colle <brian.colle at gmail.com>
>> wrote:
>>
>>>
>>> Hi Tara and Paul:
>>>
>>> FYI... Taylor here is trying to get the latest MET installed below...
>>>
>>> Meanwhile, per our call can you please send me an example or two of
>>> python modules that ingest data, do a simple calculation, etc.. that plug
>>> into MET...
>>>
>>> thanks,
>>> brian
>>>
>>> ---------- Forwarded message ---------
>>> From: Taylor Mandelbaum <taylor.mandelbaum at stonybrook.edu>
>>> Date: Mon, Nov 26, 2018 at 7:31 PM
>>> Subject: MET 8.0 Installation Help
>>> To: <met_help at ucar.edu>, Brian Colle <brian.colle at gmail.com>, Mark Lang
>>> <mark.lang at stonybrook.edu>
>>>
>>>
>>> Hey MET folks,
>>>
>>> I'm working with Brian (cc'd here) to get an updated version of MET 8.0
>>> on our local cluster. I'm running into a fatal error when running make
>>> install:
>>>
>>> ../../../src/libcode/vx_gsl_prob/gsl_cdf.h:17:25: fatal error:
>>> gsl/gsl_cdf.h: No such file or directory
>>>
>>> I also attached the log file. I am pretty sure I had installed GNU
>>> Scientific Library prior to trying to install MET; do I need to specify the
>>> path when configuring MET prior to installation? If not, what could be
>>> causing the issue?
>>>
>>> Thanks!
>>> --
>>> *Taylor Mandelbaum*
>>> Graduate Student
>>> Atmospheric and Oceanic Sciences | Stony Brook University
>>> 678.468.5789
>>>
>>
>>
>> --
>> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> Tara Jensen
>> Project Manager II
>> NCAR RAL and DTC
>> PO Box 3000, Boulder, Colorado 80307 USA
>> +1 303-497-8479 jensen at ucar.edu
>>
>
--
*Taylor Mandelbaum*
Graduate Student
Atmospheric and Oceanic Sciences | Stony Brook University
678.468.5789
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: Fwd: MET 8.0 Installation Help
From: Julie Prestopnik
Time: Thu Dec 13 13:02:54 2018
Hi Taylor.
Thanks for attaching your config.log file. I see the following errors
in
the file:
cc1plus: error: /D2/ryan/g2clib-1.6.0: Permission denied
cc1plus: error: /D2/ryan/cairo-1.12.0/include/cairo: Permission denied
I am not exactly sure what the permissions on those directories need
to
be. Could you take a look at the top level of /D2/ryan and send me
what
the permissions are for the g2clib-1.6.0 and cairo-1.12.0 directories
are
using "ls -l /D2/ryan" and send me the output?
Thanks!
Julie
On Thu, Dec 13, 2018 at 10:39 AM John Halley Gotway via RT <
met_help at ucar.edu> wrote:
>
> Thu Dec 13 10:39:00 2018: Request 88146 was acted upon.
> Transaction: Ticket created by johnhg
> Queue: met_help
> Subject: Fwd: MET 8.0 Installation Help
> Owner: Nobody
> Requestors: johnhg at ucar.edu
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=88146 >
>
>
> Julie,
>
> I'm forwarding to met_help a message that Taylor sent yesterday
directly to
> Tara, Brian, Paul, and myself.
>
> Taylor, please respond to met_help at ucar.edu to make sure the
> correspondence
> makes it into the ticketing system. And you can CC whomever you'd
like on
> those messages.
>
> Thanks,
> John
>
> ---------- Forwarded message ---------
> From: Taylor Mandelbaum <taylor.mandelbaum at stonybrook.edu>
> Date: Wed, Dec 12, 2018 at 6:09 PM
> Subject: Re: MET 8.0 Installation Help
> To: <johnhg at ucar.edu>
> Cc: <jensen at ucar.edu>, Brian Colle <brian.colle at gmail.com>, <
> pkucera at ucar.edu>
>
>
> Hey John, Julie,
>
> Thanks for the replies earlier and apologies for the late reply. I
included
> the necessary env vars in my bashrc:
>
> # .bashrc
>
> # Source global definitions
> if [ -f /etc/bashrc ]; then
> . /etc/bashrc
> fi
>
> # User specific aliases and functions
>
>
> module load gcc
> module load torque
> module load python/3.5.2
> module load netcdf/intel/64/4.3.3.1
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH
> :/opt/intel-soft/lib:/usr/lib64:/usr/local/lib:/home/msienk/lib
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH
> :/cm/shared/apps/python/3.5.2/lib/python3.5/site-packages/cartopy
>
> # Needed for MET
> export MET_BUFRLIB=/D2/ryan/BUFRLIB
> export MET_GRIB2CINC=/D2/ryan/g2clib-1.6.0
> export MET_GRIB2CLIB=/D2/ryan/g2clib-1.6.0
> export MET_GSL=/D2/ryan/gsl-2.3
> export MET_CAIROINC=/D2/ryan/cairo-1.12.0/include/cairo
> export MET_CAIROLIB=/D2/ryan/cairo-1.12.0/lib/cairo
> export MET_FREETYPE=/D2/ryan/freetype-2.6.4
> export MET_FONT_DIR=/D2/ryan/fonts
> export MET_NETCDF=/opt/netcdf-gfortran
> export MET_NETCDFINC=/opt/netcdf-gfortran/include
> export MET_NETCDFLIB=/opt/netcdf-gfortran/lib
>
>
> But am running into an error when I try to compile it now:
>
> checking whether the C++ compiler works... no
> configure: error: in `/home/taylorm/MET8/met-8.0_bugfix':
> configure: error: C++ compiler cannot create executables
>
> Attached the config.log if it helps.
>
> Do I need to add another environment variable or find the path to a
C++
> compiler on the computer?
>
> Thanks again. We're working on getting the source code built so
anyone on
> the hpc can access it, but in the mean time I'm loading it user-
side.
>
> On Tue, Nov 27, 2018 at 7:32 PM John Halley Gotway <johnhg at ucar.edu>
> wrote:
>
> > Hi all,
> >
> > I just added 8 examples of using python scripts to read data and
pass it
> > via memory to MET to this page:
> > https://dtcenter.org/met/users/downloads/analysis_scripts.php
> >
> > See the section labelled "Python Scripts".
> >
> > The examples include reading input ASCII, binary, and NetCDF data
files.
> > All examples are just a call to MET's plot_data_plane tool and
include
> the
> > resulting image. But once that's working, the same python script
can be
> > used to hand data off to the other MET tools.
> >
> > Hope this helps.
> >
> > Thanks,
> > John
> >
> >
> > On Tue, Nov 27, 2018 at 2:43 PM Tara Jensen <jensen at ucar.edu>
wrote:
> >
> >> Hi Brian,
> >>
> >> John is going to work on putting the examples on our MET website
for all
> >> to take advantage of... He'll reply to this email when it's done.
> >>
> >> Hope that'll work and Cheers, Tara
> >>
> >> On Mon, Nov 26, 2018 at 5:38 PM Brian Colle
<brian.colle at gmail.com>
> >> wrote:
> >>
> >>>
> >>> Hi Tara and Paul:
> >>>
> >>> FYI... Taylor here is trying to get the latest MET installed
below...
> >>>
> >>> Meanwhile, per our call can you please send me an example or two
of
> >>> python modules that ingest data, do a simple calculation, etc..
that
> plug
> >>> into MET...
> >>>
> >>> thanks,
> >>> brian
> >>>
> >>> ---------- Forwarded message ---------
> >>> From: Taylor Mandelbaum <taylor.mandelbaum at stonybrook.edu>
> >>> Date: Mon, Nov 26, 2018 at 7:31 PM
> >>> Subject: MET 8.0 Installation Help
> >>> To: <met_help at ucar.edu>, Brian Colle <brian.colle at gmail.com>,
Mark
> Lang
> >>> <mark.lang at stonybrook.edu>
> >>>
> >>>
> >>> Hey MET folks,
> >>>
> >>> I'm working with Brian (cc'd here) to get an updated version of
MET 8.0
> >>> on our local cluster. I'm running into a fatal error when
running make
> >>> install:
> >>>
> >>> ../../../src/libcode/vx_gsl_prob/gsl_cdf.h:17:25: fatal error:
> >>> gsl/gsl_cdf.h: No such file or directory
> >>>
> >>> I also attached the log file. I am pretty sure I had installed
GNU
> >>> Scientific Library prior to trying to install MET; do I need to
> specify the
> >>> path when configuring MET prior to installation? If not, what
could be
> >>> causing the issue?
> >>>
> >>> Thanks!
> >>> --
> >>> *Taylor Mandelbaum*
> >>> Graduate Student
> >>> Atmospheric and Oceanic Sciences | Stony Brook University
> >>> 678.468.5789
> >>>
> >>
> >>
> >> --
> >> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> >> Tara Jensen
> >> Project Manager II
> >> NCAR RAL and DTC
> >> PO Box 3000, Boulder, Colorado 80307 USA
> >> +1 303-497-8479 jensen at ucar.edu
> >>
> >
>
> --
> *Taylor Mandelbaum*
> Graduate Student
> Atmospheric and Oceanic Sciences | Stony Brook University
> 678.468.5789
>
>
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