[Met_help] [rt.rap.ucar.edu #82990] History for issue while compiling METv5.2
Julie Prestopnik via RT
met_help at ucar.edu
Tue Feb 27 08:57:36 MST 2018
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Dear,
Hello, I am Jia Jung and a graduate student at the University of Houston.
I need to use pb2nc tool to deal with gdas data for my research. So, I
would like to use MET tools.
I downloaded and compiled BUFRLIB_v10-2-3 by following MET user guild pdf
file.
Anyway, I got an undefined reference error.
=====================================================
/usr/bin/ld: /tng4/users/jjung/tool/BUFRLIB/libbufr.a(ups.o): undefined
reference to symbol '__mth_i_dpowi'
/opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding symbols: DSO missing
from command line
collect2: error: ld returned 1 exit status
=====================================================
I also checked libburfr.a file and I confirmed that there isn't
'__mth_i_dpowi'.
Can you tell me how to fix it? I attached my log file.
Thank you in advance!
Best Regards,
Jia Jung
--
Jia Jung
Atmospheric Science Graduate Student
University of Houston
Department of Earth & Atmospheric Sciences
helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
346-247-9968
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: issue while compiling METv5.2
From: Julie Prestopnik
Time: Mon Nov 13 09:57:33 2017
Hi. I see that you are having trouble compiling METv5.2. If
possible, I'd
suggest upgrading from METv5.2 to version 6.0. Be aware though that
version 6.0 is a pretty big change since we switched from using
NetCDF3 to
NetCDF4. Practically speaking that requires NetCDF4 built upon HDF5.
So
the MET configuration/compilation process has changed slightly. We
are
currently working on version 6.1(to be released at the end of this
month)
which will require NetCDF4 as well. So as long as you're recompiling,
I'd
recommend using 6.0.
If you plan to upgrade to 6.0, please follow the compilation
instructions
in our online tutorial for METv6.0 and let us know if you experience
any
problems or have questions:
https://dtcenter.org/met/users/support/online_tutorial/METv6.0/tutorial.php?name=compilation&category=req_libs
I noticed this warning in your log file, which could also be cause for
concern:
/usr/bin/ld: warning: libnetcdf.so.7, needed by
/usr/lib/gcc/x86_64-redhat-
linux/4.8.5/../../../../lib64/libnetcdf_c++.so,
may conflict with libnetcdf.so.11
If you'd like to continue with METv5.2, it looks like there is a
linking
problem. However, I'd like to gather some more information. Please
verify
that you installed BUFRLIB using the commands listed on this page for
installed BUFRLIB with METv5.2:
https://dtcenter.org/met/users/support/online_tutorial/METv5.2/tutorial.php?name=compilation&category=req_libs
Then, please run "make clean", then run your "configure" command as
directed on this page (having set up all of your environment
variables:
https://dtcenter.org/met/users/support/online_tutorial/METv5.2/tutorial.php?name=compilation&category=configure
Then, please run "make_install' and send me your config.log file and
your
make_install.log file.
Thank you.
Julie
On Sun, Nov 12, 2017 at 2:30 PM, Jia Jung via RT <met_help at ucar.edu>
wrote:
>
> Sun Nov 12 14:30:14 2017: Request 82990 was acted upon.
> Transaction: Ticket created by helloiamjia at gmail.com
> Queue: met_help
> Subject: issue while compiling METv5.2
> Owner: Nobody
> Requestors: helloiamjia at gmail.com
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
>
>
> Dear,
>
> Hello, I am Jia Jung and a graduate student at the University of
Houston.
> I need to use pb2nc tool to deal with gdas data for my research. So,
I
> would like to use MET tools.
>
> I downloaded and compiled BUFRLIB_v10-2-3 by following MET user
guild pdf
> file.
> Anyway, I got an undefined reference error.
> =====================================================
> /usr/bin/ld: /tng4/users/jjung/tool/BUFRLIB/libbufr.a(ups.o):
undefined
> reference to symbol '__mth_i_dpowi'
> /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding symbols: DSO
missing
> from command line
> collect2: error: ld returned 1 exit status
> =====================================================
>
> I also checked libburfr.a file and I confirmed that there isn't
> '__mth_i_dpowi'.
>
> Can you tell me how to fix it? I attached my log file.
>
>
> Thank you in advance!
>
> Best Regards,
> Jia Jung
> --
> Jia Jung
>
> Atmospheric Science Graduate Student
> University of Houston
> Department of Earth & Atmospheric Sciences
> helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> 346-247-9968
>
>
------------------------------------------------
Subject: issue while compiling METv5.2
From: Jia Jung
Time: Mon Nov 13 23:16:43 2017
Dear Julie,
After your email, I changed the version from ver 5.2 to ver 6.0.
Because in
my system, I have netCDF4 with HDF5.
I compiled BUFRLIB with these comments because I am using PGI(pgcc,
pgf90).
pgcc -c -DUNDERSCORE *.c
pgf90 -c -DUNDERSCORE -Mnosecond_underscore *.f *.F
ar crv libbufr.a *.o
However, I also have this error message, the same as previous message.
Regarding a warning message(libnetcdf.so.7~), I am not sure if it
brings
this problem because I have seen this message for a while. I compiled
several codes without any problem. If you think that it may affect
this
compiling, I can ask it to my department administrator.
==================================================
/usr/bin/ld: warning: libnetcdf.so.7, needed by
/opt/netCDF/lib/libnetcdf_c++4.so, may conflict with libnetcdf.so.11
/usr/bin/ld: /tng4/users/jjung/tool/BUFRLIB/libbufr.a(ups.o):
undefined
reference to symbol '__mth_i_dpowi'
/opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding symbols: DSO
missing
from command line
collect2: error: ld returned 1 exit status
make[4]: *** [pb2nc] Error 1
make[4]: Leaving directory `/tng4/users/jjung/tool/MET/me
t-6.0_bugfix/src/tools/other/pb2nc'
make[3]: *** [install-recursive] Error 1
make[3]: Leaving directory `/tng4/users/jjung/tool/MET/me
t-6.0_bugfix/src/tools/other'
make[2]: *** [install-recursive] Error 1
make[2]: Leaving directory `/tng4/users/jjung/tool/MET/me
t-6.0_bugfix/src/tools'
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory `/tng4/users/jjung/tool/MET/met-
6.0_bugfix/src'
make: *** [install-recursive] Error 1
===================================================
I attached the log file again. please find it.
Thank you for your help.
Best Regards,
Jia Jung
On Mon, Nov 13, 2017 at 10:57 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> wrote:
> Hi. I see that you are having trouble compiling METv5.2. If
possible, I'd
> suggest upgrading from METv5.2 to version 6.0. Be aware though that
> version 6.0 is a pretty big change since we switched from using
NetCDF3 to
> NetCDF4. Practically speaking that requires NetCDF4 built upon HDF5.
So
> the MET configuration/compilation process has changed slightly. We
are
> currently working on version 6.1(to be released at the end of this
month)
> which will require NetCDF4 as well. So as long as you're
recompiling, I'd
> recommend using 6.0.
>
> If you plan to upgrade to 6.0, please follow the compilation
instructions
> in our online tutorial for METv6.0 and let us know if you experience
any
> problems or have questions:
> https://dtcenter.org/met/users/support/online_tutorial/METv6
> .0/tutorial.php?name=compilation&category=req_libs
>
> I noticed this warning in your log file, which could also be cause
for
> concern:
> /usr/bin/ld: warning: libnetcdf.so.7, needed by
> /usr/lib/gcc/x86_64-redhat-
linux/4.8.5/../../../../lib64/libnetcdf_c++.so,
> may conflict with libnetcdf.so.11
>
> If you'd like to continue with METv5.2, it looks like there is a
linking
> problem. However, I'd like to gather some more information. Please
verify
> that you installed BUFRLIB using the commands listed on this page
for
> installed BUFRLIB with METv5.2:
> https://dtcenter.org/met/users/support/online_tutorial/METv5
> .2/tutorial.php?name=compilation&category=req_libs
>
> Then, please run "make clean", then run your "configure" command as
> directed on this page (having set up all of your environment
variables:
> https://dtcenter.org/met/users/support/online_tutorial/METv5
> .2/tutorial.php?name=compilation&category=configure
>
> Then, please run "make_install' and send me your config.log file and
your
> make_install.log file.
>
> Thank you.
>
> Julie
>
>
>
> On Sun, Nov 12, 2017 at 2:30 PM, Jia Jung via RT <met_help at ucar.edu>
> wrote:
>
> >
> > Sun Nov 12 14:30:14 2017: Request 82990 was acted upon.
> > Transaction: Ticket created by helloiamjia at gmail.com
> > Queue: met_help
> > Subject: issue while compiling METv5.2
> > Owner: Nobody
> > Requestors: helloiamjia at gmail.com
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> >
> >
> > Dear,
> >
> > Hello, I am Jia Jung and a graduate student at the University of
Houston.
> > I need to use pb2nc tool to deal with gdas data for my research.
So, I
> > would like to use MET tools.
> >
> > I downloaded and compiled BUFRLIB_v10-2-3 by following MET user
guild pdf
> > file.
> > Anyway, I got an undefined reference error.
> > =====================================================
> > /usr/bin/ld: /tng4/users/jjung/tool/BUFRLIB/libbufr.a(ups.o):
undefined
> > reference to symbol '__mth_i_dpowi'
> > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding symbols: DSO
> missing
> > from command line
> > collect2: error: ld returned 1 exit status
> > =====================================================
> >
> > I also checked libburfr.a file and I confirmed that there isn't
> > '__mth_i_dpowi'.
> >
> > Can you tell me how to fix it? I attached my log file.
> >
> >
> > Thank you in advance!
> >
> > Best Regards,
> > Jia Jung
> > --
> > Jia Jung
> >
> > Atmospheric Science Graduate Student
> > University of Houston
> > Department of Earth & Atmospheric Sciences
> > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > 346-247-9968
> >
> >
>
>
--
Jia Jung
Atmospheric Science Graduate Student
University of Houston
Department of Earth & Atmospheric Sciences
helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
346-247-9968 <(346)%20247-9968>
------------------------------------------------
Subject: issue while compiling METv5.2
From: Julie Prestopnik
Time: Tue Nov 14 08:58:10 2017
Thank you for attaching your make install log file and for confirming
how
you compiled BUFRLIB. Could you also please send me your config.log
file?
Thanks,
Julie
On Mon, Nov 13, 2017 at 11:16 PM, Jia Jung via RT <met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
>
> Dear Julie,
>
> After your email, I changed the version from ver 5.2 to ver 6.0.
Because in
> my system, I have netCDF4 with HDF5.
> I compiled BUFRLIB with these comments because I am using PGI(pgcc,
pgf90).
>
> pgcc -c -DUNDERSCORE *.c
> pgf90 -c -DUNDERSCORE -Mnosecond_underscore *.f *.F
> ar crv libbufr.a *.o
>
> However, I also have this error message, the same as previous
message.
> Regarding a warning message(libnetcdf.so.7~), I am not sure if it
brings
> this problem because I have seen this message for a while. I
compiled
> several codes without any problem. If you think that it may affect
this
> compiling, I can ask it to my department administrator.
>
> ==================================================
> /usr/bin/ld: warning: libnetcdf.so.7, needed by
> /opt/netCDF/lib/libnetcdf_c++4.so, may conflict with libnetcdf.so.11
> /usr/bin/ld: /tng4/users/jjung/tool/BUFRLIB/libbufr.a(ups.o):
undefined
> reference to symbol '__mth_i_dpowi'
> /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding symbols: DSO
missing
> from command line
> collect2: error: ld returned 1 exit status
> make[4]: *** [pb2nc] Error 1
> make[4]: Leaving directory `/tng4/users/jjung/tool/MET/me
> t-6.0_bugfix/src/tools/other/pb2nc'
> make[3]: *** [install-recursive] Error 1
> make[3]: Leaving directory `/tng4/users/jjung/tool/MET/me
> t-6.0_bugfix/src/tools/other'
> make[2]: *** [install-recursive] Error 1
> make[2]: Leaving directory `/tng4/users/jjung/tool/MET/me
> t-6.0_bugfix/src/tools'
> make[1]: *** [install-recursive] Error 1
> make[1]: Leaving directory `/tng4/users/jjung/tool/MET/met-
6.0_bugfix/src'
> make: *** [install-recursive] Error 1
> ===================================================
>
> I attached the log file again. please find it.
> Thank you for your help.
>
> Best Regards,
> Jia Jung
>
>
>
> On Mon, Nov 13, 2017 at 10:57 AM, Julie Prestopnik via RT <
> met_help at ucar.edu
> > wrote:
>
> > Hi. I see that you are having trouble compiling METv5.2. If
possible,
> I'd
> > suggest upgrading from METv5.2 to version 6.0. Be aware though
that
> > version 6.0 is a pretty big change since we switched from using
NetCDF3
> to
> > NetCDF4. Practically speaking that requires NetCDF4 built upon
HDF5. So
> > the MET configuration/compilation process has changed slightly.
We are
> > currently working on version 6.1(to be released at the end of this
month)
> > which will require NetCDF4 as well. So as long as you're
recompiling,
> I'd
> > recommend using 6.0.
> >
> > If you plan to upgrade to 6.0, please follow the compilation
instructions
> > in our online tutorial for METv6.0 and let us know if you
experience any
> > problems or have questions:
> > https://dtcenter.org/met/users/support/online_tutorial/METv6
> > .0/tutorial.php?name=compilation&category=req_libs
> >
> > I noticed this warning in your log file, which could also be cause
for
> > concern:
> > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/
> libnetcdf_c++.so,
> > may conflict with libnetcdf.so.11
> >
> > If you'd like to continue with METv5.2, it looks like there is a
linking
> > problem. However, I'd like to gather some more information.
Please
> verify
> > that you installed BUFRLIB using the commands listed on this page
for
> > installed BUFRLIB with METv5.2:
> > https://dtcenter.org/met/users/support/online_tutorial/METv5
> > .2/tutorial.php?name=compilation&category=req_libs
> >
> > Then, please run "make clean", then run your "configure" command
as
> > directed on this page (having set up all of your environment
variables:
> > https://dtcenter.org/met/users/support/online_tutorial/METv5
> > .2/tutorial.php?name=compilation&category=configure
> >
> > Then, please run "make_install' and send me your config.log file
and your
> > make_install.log file.
> >
> > Thank you.
> >
> > Julie
> >
> >
> >
> > On Sun, Nov 12, 2017 at 2:30 PM, Jia Jung via RT
<met_help at ucar.edu>
> > wrote:
> >
> > >
> > > Sun Nov 12 14:30:14 2017: Request 82990 was acted upon.
> > > Transaction: Ticket created by helloiamjia at gmail.com
> > > Queue: met_help
> > > Subject: issue while compiling METv5.2
> > > Owner: Nobody
> > > Requestors: helloiamjia at gmail.com
> > > Status: new
> > > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990
> >
> > >
> > >
> > > Dear,
> > >
> > > Hello, I am Jia Jung and a graduate student at the University of
> Houston.
> > > I need to use pb2nc tool to deal with gdas data for my research.
So, I
> > > would like to use MET tools.
> > >
> > > I downloaded and compiled BUFRLIB_v10-2-3 by following MET user
guild
> pdf
> > > file.
> > > Anyway, I got an undefined reference error.
> > > =====================================================
> > > /usr/bin/ld: /tng4/users/jjung/tool/BUFRLIB/libbufr.a(ups.o):
> undefined
> > > reference to symbol '__mth_i_dpowi'
> > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding symbols:
DSO
> > missing
> > > from command line
> > > collect2: error: ld returned 1 exit status
> > > =====================================================
> > >
> > > I also checked libburfr.a file and I confirmed that there isn't
> > > '__mth_i_dpowi'.
> > >
> > > Can you tell me how to fix it? I attached my log file.
> > >
> > >
> > > Thank you in advance!
> > >
> > > Best Regards,
> > > Jia Jung
> > > --
> > > Jia Jung
> > >
> > > Atmospheric Science Graduate Student
> > > University of Houston
> > > Department of Earth & Atmospheric Sciences
> > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > 346-247-9968
> > >
> > >
> >
> >
>
>
> --
> Jia Jung
>
> Atmospheric Science Graduate Student
> University of Houston
> Department of Earth & Atmospheric Sciences
> helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> 346-247-9968 <(346)%20247-9968>
>
>
------------------------------------------------
Subject: issue while compiling METv5.2
From: Jia Jung
Time: Tue Nov 14 09:49:29 2017
Dear Julie,
I made a script file while compiling BURFLIB. I attached it. Please
find it.
Thank you for your help
Best Regards,
Jia Jung
On Tue, Nov 14, 2017 at 9:58 AM, Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:
> Thank you for attaching your make install log file and for
confirming how
> you compiled BUFRLIB. Could you also please send me your config.log
file?
>
> Thanks,
> Julie
>
> On Mon, Nov 13, 2017 at 11:16 PM, Jia Jung via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> >
> > Dear Julie,
> >
> > After your email, I changed the version from ver 5.2 to ver 6.0.
Because
> in
> > my system, I have netCDF4 with HDF5.
> > I compiled BUFRLIB with these comments because I am using
PGI(pgcc,
> pgf90).
> >
> > pgcc -c -DUNDERSCORE *.c
> > pgf90 -c -DUNDERSCORE -Mnosecond_underscore *.f *.F
> > ar crv libbufr.a *.o
> >
> > However, I also have this error message, the same as previous
message.
> > Regarding a warning message(libnetcdf.so.7~), I am not sure if it
brings
> > this problem because I have seen this message for a while. I
compiled
> > several codes without any problem. If you think that it may affect
this
> > compiling, I can ask it to my department administrator.
> >
> > ==================================================
> > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > /opt/netCDF/lib/libnetcdf_c++4.so, may conflict with
libnetcdf.so.11
> > /usr/bin/ld: /tng4/users/jjung/tool/BUFRLIB/libbufr.a(ups.o):
undefined
> > reference to symbol '__mth_i_dpowi'
> > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding symbols: DSO
> missing
> > from command line
> > collect2: error: ld returned 1 exit status
> > make[4]: *** [pb2nc] Error 1
> > make[4]: Leaving directory `/tng4/users/jjung/tool/MET/me
> > t-6.0_bugfix/src/tools/other/pb2nc'
> > make[3]: *** [install-recursive] Error 1
> > make[3]: Leaving directory `/tng4/users/jjung/tool/MET/me
> > t-6.0_bugfix/src/tools/other'
> > make[2]: *** [install-recursive] Error 1
> > make[2]: Leaving directory `/tng4/users/jjung/tool/MET/me
> > t-6.0_bugfix/src/tools'
> > make[1]: *** [install-recursive] Error 1
> > make[1]: Leaving directory `/tng4/users/jjung/tool/MET/
> met-6.0_bugfix/src'
> > make: *** [install-recursive] Error 1
> > ===================================================
> >
> > I attached the log file again. please find it.
> > Thank you for your help.
> >
> > Best Regards,
> > Jia Jung
> >
> >
> >
> > On Mon, Nov 13, 2017 at 10:57 AM, Julie Prestopnik via RT <
> > met_help at ucar.edu
> > > wrote:
> >
> > > Hi. I see that you are having trouble compiling METv5.2. If
possible,
> > I'd
> > > suggest upgrading from METv5.2 to version 6.0. Be aware though
that
> > > version 6.0 is a pretty big change since we switched from using
NetCDF3
> > to
> > > NetCDF4. Practically speaking that requires NetCDF4 built upon
HDF5.
> So
> > > the MET configuration/compilation process has changed slightly.
We are
> > > currently working on version 6.1(to be released at the end of
this
> month)
> > > which will require NetCDF4 as well. So as long as you're
recompiling,
> > I'd
> > > recommend using 6.0.
> > >
> > > If you plan to upgrade to 6.0, please follow the compilation
> instructions
> > > in our online tutorial for METv6.0 and let us know if you
experience
> any
> > > problems or have questions:
> > > https://dtcenter.org/met/users/support/online_tutorial/METv6
> > > .0/tutorial.php?name=compilation&category=req_libs
> > >
> > > I noticed this warning in your log file, which could also be
cause for
> > > concern:
> > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/
> > libnetcdf_c++.so,
> > > may conflict with libnetcdf.so.11
> > >
> > > If you'd like to continue with METv5.2, it looks like there is a
> linking
> > > problem. However, I'd like to gather some more information.
Please
> > verify
> > > that you installed BUFRLIB using the commands listed on this
page for
> > > installed BUFRLIB with METv5.2:
> > > https://dtcenter.org/met/users/support/online_tutorial/METv5
> > > .2/tutorial.php?name=compilation&category=req_libs
> > >
> > > Then, please run "make clean", then run your "configure" command
as
> > > directed on this page (having set up all of your environment
variables:
> > > https://dtcenter.org/met/users/support/online_tutorial/METv5
> > > .2/tutorial.php?name=compilation&category=configure
> > >
> > > Then, please run "make_install' and send me your config.log file
and
> your
> > > make_install.log file.
> > >
> > > Thank you.
> > >
> > > Julie
> > >
> > >
> > >
> > > On Sun, Nov 12, 2017 at 2:30 PM, Jia Jung via RT
<met_help at ucar.edu>
> > > wrote:
> > >
> > > >
> > > > Sun Nov 12 14:30:14 2017: Request 82990 was acted upon.
> > > > Transaction: Ticket created by helloiamjia at gmail.com
> > > > Queue: met_help
> > > > Subject: issue while compiling METv5.2
> > > > Owner: Nobody
> > > > Requestors: helloiamjia at gmail.com
> > > > Status: new
> > > > Ticket <URL: https://rt.rap.ucar.edu/rt/
> Ticket/Display.html?id=82990
> > >
> > > >
> > > >
> > > > Dear,
> > > >
> > > > Hello, I am Jia Jung and a graduate student at the University
of
> > Houston.
> > > > I need to use pb2nc tool to deal with gdas data for my
research. So,
> I
> > > > would like to use MET tools.
> > > >
> > > > I downloaded and compiled BUFRLIB_v10-2-3 by following MET
user guild
> > pdf
> > > > file.
> > > > Anyway, I got an undefined reference error.
> > > > =====================================================
> > > > /usr/bin/ld: /tng4/users/jjung/tool/BUFRLIB/libbufr.a(ups.o):
> > undefined
> > > > reference to symbol '__mth_i_dpowi'
> > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding symbols:
DSO
> > > missing
> > > > from command line
> > > > collect2: error: ld returned 1 exit status
> > > > =====================================================
> > > >
> > > > I also checked libburfr.a file and I confirmed that there
isn't
> > > > '__mth_i_dpowi'.
> > > >
> > > > Can you tell me how to fix it? I attached my log file.
> > > >
> > > >
> > > > Thank you in advance!
> > > >
> > > > Best Regards,
> > > > Jia Jung
> > > > --
> > > > Jia Jung
> > > >
> > > > Atmospheric Science Graduate Student
> > > > University of Houston
> > > > Department of Earth & Atmospheric Sciences
> > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > 346-247-9968
> > > >
> > > >
> > >
> > >
> >
> >
> > --
> > Jia Jung
> >
> > Atmospheric Science Graduate Student
> > University of Houston
> > Department of Earth & Atmospheric Sciences
> > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > 346-247-9968 <(346)%20247-9968>
> >
> >
>
>
--
Jia Jung
Atmospheric Science Graduate Student
University of Houston
Department of Earth & Atmospheric Sciences
helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
346-247-9968
------------------------------------------------
Subject: issue while compiling METv5.2
From: Julie Prestopnik
Time: Tue Nov 14 09:53:37 2017
Thank you! Could you please also send me your config.log file? This
will
provide me with some further information about your environment that
could
be useful.
Thanks,
Julie
On Tue, Nov 14, 2017 at 9:49 AM, Jia Jung via RT <met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
>
> Dear Julie,
>
> I made a script file while compiling BURFLIB. I attached it. Please
find
> it.
> Thank you for your help
>
>
> Best Regards,
> Jia Jung
>
> On Tue, Nov 14, 2017 at 9:58 AM, Julie Prestopnik via RT <
> met_help at ucar.edu>
> wrote:
>
> > Thank you for attaching your make install log file and for
confirming how
> > you compiled BUFRLIB. Could you also please send me your
config.log
> file?
> >
> > Thanks,
> > Julie
> >
> > On Mon, Nov 13, 2017 at 11:16 PM, Jia Jung via RT
<met_help at ucar.edu>
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> > >
> > > Dear Julie,
> > >
> > > After your email, I changed the version from ver 5.2 to ver 6.0.
> Because
> > in
> > > my system, I have netCDF4 with HDF5.
> > > I compiled BUFRLIB with these comments because I am using
PGI(pgcc,
> > pgf90).
> > >
> > > pgcc -c -DUNDERSCORE *.c
> > > pgf90 -c -DUNDERSCORE -Mnosecond_underscore *.f *.F
> > > ar crv libbufr.a *.o
> > >
> > > However, I also have this error message, the same as previous
message.
> > > Regarding a warning message(libnetcdf.so.7~), I am not sure if
it
> brings
> > > this problem because I have seen this message for a while. I
compiled
> > > several codes without any problem. If you think that it may
affect this
> > > compiling, I can ask it to my department administrator.
> > >
> > > ==================================================
> > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > /opt/netCDF/lib/libnetcdf_c++4.so, may conflict with
libnetcdf.so.11
> > > /usr/bin/ld: /tng4/users/jjung/tool/BUFRLIB/libbufr.a(ups.o):
> undefined
> > > reference to symbol '__mth_i_dpowi'
> > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding symbols:
DSO
> > missing
> > > from command line
> > > collect2: error: ld returned 1 exit status
> > > make[4]: *** [pb2nc] Error 1
> > > make[4]: Leaving directory `/tng4/users/jjung/tool/MET/me
> > > t-6.0_bugfix/src/tools/other/pb2nc'
> > > make[3]: *** [install-recursive] Error 1
> > > make[3]: Leaving directory `/tng4/users/jjung/tool/MET/me
> > > t-6.0_bugfix/src/tools/other'
> > > make[2]: *** [install-recursive] Error 1
> > > make[2]: Leaving directory `/tng4/users/jjung/tool/MET/me
> > > t-6.0_bugfix/src/tools'
> > > make[1]: *** [install-recursive] Error 1
> > > make[1]: Leaving directory `/tng4/users/jjung/tool/MET/
> > met-6.0_bugfix/src'
> > > make: *** [install-recursive] Error 1
> > > ===================================================
> > >
> > > I attached the log file again. please find it.
> > > Thank you for your help.
> > >
> > > Best Regards,
> > > Jia Jung
> > >
> > >
> > >
> > > On Mon, Nov 13, 2017 at 10:57 AM, Julie Prestopnik via RT <
> > > met_help at ucar.edu
> > > > wrote:
> > >
> > > > Hi. I see that you are having trouble compiling METv5.2. If
> possible,
> > > I'd
> > > > suggest upgrading from METv5.2 to version 6.0. Be aware
though that
> > > > version 6.0 is a pretty big change since we switched from
using
> NetCDF3
> > > to
> > > > NetCDF4. Practically speaking that requires NetCDF4 built upon
HDF5.
> > So
> > > > the MET configuration/compilation process has changed
slightly. We
> are
> > > > currently working on version 6.1(to be released at the end of
this
> > month)
> > > > which will require NetCDF4 as well. So as long as you're
> recompiling,
> > > I'd
> > > > recommend using 6.0.
> > > >
> > > > If you plan to upgrade to 6.0, please follow the compilation
> > instructions
> > > > in our online tutorial for METv6.0 and let us know if you
experience
> > any
> > > > problems or have questions:
> > > > https://dtcenter.org/met/users/support/online_tutorial/METv6
> > > > .0/tutorial.php?name=compilation&category=req_libs
> > > >
> > > > I noticed this warning in your log file, which could also be
cause
> for
> > > > concern:
> > > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > > /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/
> > > libnetcdf_c++.so,
> > > > may conflict with libnetcdf.so.11
> > > >
> > > > If you'd like to continue with METv5.2, it looks like there is
a
> > linking
> > > > problem. However, I'd like to gather some more information.
Please
> > > verify
> > > > that you installed BUFRLIB using the commands listed on this
page for
> > > > installed BUFRLIB with METv5.2:
> > > > https://dtcenter.org/met/users/support/online_tutorial/METv5
> > > > .2/tutorial.php?name=compilation&category=req_libs
> > > >
> > > > Then, please run "make clean", then run your "configure"
command as
> > > > directed on this page (having set up all of your environment
> variables:
> > > > https://dtcenter.org/met/users/support/online_tutorial/METv5
> > > > .2/tutorial.php?name=compilation&category=configure
> > > >
> > > > Then, please run "make_install' and send me your config.log
file and
> > your
> > > > make_install.log file.
> > > >
> > > > Thank you.
> > > >
> > > > Julie
> > > >
> > > >
> > > >
> > > > On Sun, Nov 12, 2017 at 2:30 PM, Jia Jung via RT
<met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > >
> > > > > Sun Nov 12 14:30:14 2017: Request 82990 was acted upon.
> > > > > Transaction: Ticket created by helloiamjia at gmail.com
> > > > > Queue: met_help
> > > > > Subject: issue while compiling METv5.2
> > > > > Owner: Nobody
> > > > > Requestors: helloiamjia at gmail.com
> > > > > Status: new
> > > > > Ticket <URL: https://rt.rap.ucar.edu/rt/
> > Ticket/Display.html?id=82990
> > > >
> > > > >
> > > > >
> > > > > Dear,
> > > > >
> > > > > Hello, I am Jia Jung and a graduate student at the
University of
> > > Houston.
> > > > > I need to use pb2nc tool to deal with gdas data for my
research.
> So,
> > I
> > > > > would like to use MET tools.
> > > > >
> > > > > I downloaded and compiled BUFRLIB_v10-2-3 by following MET
user
> guild
> > > pdf
> > > > > file.
> > > > > Anyway, I got an undefined reference error.
> > > > > =====================================================
> > > > > /usr/bin/ld:
/tng4/users/jjung/tool/BUFRLIB/libbufr.a(ups.o):
> > > undefined
> > > > > reference to symbol '__mth_i_dpowi'
> > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding
symbols: DSO
> > > > missing
> > > > > from command line
> > > > > collect2: error: ld returned 1 exit status
> > > > > =====================================================
> > > > >
> > > > > I also checked libburfr.a file and I confirmed that there
isn't
> > > > > '__mth_i_dpowi'.
> > > > >
> > > > > Can you tell me how to fix it? I attached my log file.
> > > > >
> > > > >
> > > > > Thank you in advance!
> > > > >
> > > > > Best Regards,
> > > > > Jia Jung
> > > > > --
> > > > > Jia Jung
> > > > >
> > > > > Atmospheric Science Graduate Student
> > > > > University of Houston
> > > > > Department of Earth & Atmospheric Sciences
> > > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > > 346-247-9968
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> > > --
> > > Jia Jung
> > >
> > > Atmospheric Science Graduate Student
> > > University of Houston
> > > Department of Earth & Atmospheric Sciences
> > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > 346-247-9968 <(346)%20247-9968>
> > >
> > >
> >
> >
>
>
> --
> Jia Jung
>
> Atmospheric Science Graduate Student
> University of Houston
> Department of Earth & Atmospheric Sciences
> helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> 346-247-9968
>
>
------------------------------------------------
Subject: issue while compiling METv5.2
From: Jia Jung
Time: Tue Nov 14 10:08:04 2017
Dear Julie,
Do you mean the config.log file in Met? I attached it now.
I don't see config.log file in BURFLIB, so I just sent the script
file.
Please find my attached file.
Thanks.
Best Regards,
Jia Jung
On Tue, Nov 14, 2017 at 10:53 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> wrote:
> Thank you! Could you please also send me your config.log file?
This will
> provide me with some further information about your environment that
could
> be useful.
>
> Thanks,
> Julie
>
> On Tue, Nov 14, 2017 at 9:49 AM, Jia Jung via RT <met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> >
> > Dear Julie,
> >
> > I made a script file while compiling BURFLIB. I attached it.
Please find
> > it.
> > Thank you for your help
> >
> >
> > Best Regards,
> > Jia Jung
> >
> > On Tue, Nov 14, 2017 at 9:58 AM, Julie Prestopnik via RT <
> > met_help at ucar.edu>
> > wrote:
> >
> > > Thank you for attaching your make install log file and for
confirming
> how
> > > you compiled BUFRLIB. Could you also please send me your
config.log
> > file?
> > >
> > > Thanks,
> > > Julie
> > >
> > > On Mon, Nov 13, 2017 at 11:16 PM, Jia Jung via RT
<met_help at ucar.edu>
> > > wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990
>
> > > >
> > > > Dear Julie,
> > > >
> > > > After your email, I changed the version from ver 5.2 to ver
6.0.
> > Because
> > > in
> > > > my system, I have netCDF4 with HDF5.
> > > > I compiled BUFRLIB with these comments because I am using
PGI(pgcc,
> > > pgf90).
> > > >
> > > > pgcc -c -DUNDERSCORE *.c
> > > > pgf90 -c -DUNDERSCORE -Mnosecond_underscore *.f *.F
> > > > ar crv libbufr.a *.o
> > > >
> > > > However, I also have this error message, the same as previous
> message.
> > > > Regarding a warning message(libnetcdf.so.7~), I am not sure if
it
> > brings
> > > > this problem because I have seen this message for a while. I
compiled
> > > > several codes without any problem. If you think that it may
affect
> this
> > > > compiling, I can ask it to my department administrator.
> > > >
> > > > ==================================================
> > > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > > /opt/netCDF/lib/libnetcdf_c++4.so, may conflict with
libnetcdf.so.11
> > > > /usr/bin/ld: /tng4/users/jjung/tool/BUFRLIB/libbufr.a(ups.o):
> > undefined
> > > > reference to symbol '__mth_i_dpowi'
> > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding symbols:
DSO
> > > missing
> > > > from command line
> > > > collect2: error: ld returned 1 exit status
> > > > make[4]: *** [pb2nc] Error 1
> > > > make[4]: Leaving directory `/tng4/users/jjung/tool/MET/me
> > > > t-6.0_bugfix/src/tools/other/pb2nc'
> > > > make[3]: *** [install-recursive] Error 1
> > > > make[3]: Leaving directory `/tng4/users/jjung/tool/MET/me
> > > > t-6.0_bugfix/src/tools/other'
> > > > make[2]: *** [install-recursive] Error 1
> > > > make[2]: Leaving directory `/tng4/users/jjung/tool/MET/me
> > > > t-6.0_bugfix/src/tools'
> > > > make[1]: *** [install-recursive] Error 1
> > > > make[1]: Leaving directory `/tng4/users/jjung/tool/MET/
> > > met-6.0_bugfix/src'
> > > > make: *** [install-recursive] Error 1
> > > > ===================================================
> > > >
> > > > I attached the log file again. please find it.
> > > > Thank you for your help.
> > > >
> > > > Best Regards,
> > > > Jia Jung
> > > >
> > > >
> > > >
> > > > On Mon, Nov 13, 2017 at 10:57 AM, Julie Prestopnik via RT <
> > > > met_help at ucar.edu
> > > > > wrote:
> > > >
> > > > > Hi. I see that you are having trouble compiling METv5.2.
If
> > possible,
> > > > I'd
> > > > > suggest upgrading from METv5.2 to version 6.0. Be aware
though
> that
> > > > > version 6.0 is a pretty big change since we switched from
using
> > NetCDF3
> > > > to
> > > > > NetCDF4. Practically speaking that requires NetCDF4 built
upon
> HDF5.
> > > So
> > > > > the MET configuration/compilation process has changed
slightly. We
> > are
> > > > > currently working on version 6.1(to be released at the end
of this
> > > month)
> > > > > which will require NetCDF4 as well. So as long as you're
> > recompiling,
> > > > I'd
> > > > > recommend using 6.0.
> > > > >
> > > > > If you plan to upgrade to 6.0, please follow the compilation
> > > instructions
> > > > > in our online tutorial for METv6.0 and let us know if you
> experience
> > > any
> > > > > problems or have questions:
> > > > > https://dtcenter.org/met/users/support/online_tutorial/METv6
> > > > > .0/tutorial.php?name=compilation&category=req_libs
> > > > >
> > > > > I noticed this warning in your log file, which could also be
cause
> > for
> > > > > concern:
> > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > > > /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/
> > > > libnetcdf_c++.so,
> > > > > may conflict with libnetcdf.so.11
> > > > >
> > > > > If you'd like to continue with METv5.2, it looks like there
is a
> > > linking
> > > > > problem. However, I'd like to gather some more information.
> Please
> > > > verify
> > > > > that you installed BUFRLIB using the commands listed on this
page
> for
> > > > > installed BUFRLIB with METv5.2:
> > > > > https://dtcenter.org/met/users/support/online_tutorial/METv5
> > > > > .2/tutorial.php?name=compilation&category=req_libs
> > > > >
> > > > > Then, please run "make clean", then run your "configure"
command as
> > > > > directed on this page (having set up all of your environment
> > variables:
> > > > > https://dtcenter.org/met/users/support/online_tutorial/METv5
> > > > > .2/tutorial.php?name=compilation&category=configure
> > > > >
> > > > > Then, please run "make_install' and send me your config.log
file
> and
> > > your
> > > > > make_install.log file.
> > > > >
> > > > > Thank you.
> > > > >
> > > > > Julie
> > > > >
> > > > >
> > > > >
> > > > > On Sun, Nov 12, 2017 at 2:30 PM, Jia Jung via RT <
> met_help at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > >
> > > > > > Sun Nov 12 14:30:14 2017: Request 82990 was acted upon.
> > > > > > Transaction: Ticket created by helloiamjia at gmail.com
> > > > > > Queue: met_help
> > > > > > Subject: issue while compiling METv5.2
> > > > > > Owner: Nobody
> > > > > > Requestors: helloiamjia at gmail.com
> > > > > > Status: new
> > > > > > Ticket <URL: https://rt.rap.ucar.edu/rt/
> > > Ticket/Display.html?id=82990
> > > > >
> > > > > >
> > > > > >
> > > > > > Dear,
> > > > > >
> > > > > > Hello, I am Jia Jung and a graduate student at the
University of
> > > > Houston.
> > > > > > I need to use pb2nc tool to deal with gdas data for my
research.
> > So,
> > > I
> > > > > > would like to use MET tools.
> > > > > >
> > > > > > I downloaded and compiled BUFRLIB_v10-2-3 by following MET
user
> > guild
> > > > pdf
> > > > > > file.
> > > > > > Anyway, I got an undefined reference error.
> > > > > > =====================================================
> > > > > > /usr/bin/ld:
/tng4/users/jjung/tool/BUFRLIB/libbufr.a(ups.o):
> > > > undefined
> > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding
symbols:
> DSO
> > > > > missing
> > > > > > from command line
> > > > > > collect2: error: ld returned 1 exit status
> > > > > > =====================================================
> > > > > >
> > > > > > I also checked libburfr.a file and I confirmed that there
isn't
> > > > > > '__mth_i_dpowi'.
> > > > > >
> > > > > > Can you tell me how to fix it? I attached my log file.
> > > > > >
> > > > > >
> > > > > > Thank you in advance!
> > > > > >
> > > > > > Best Regards,
> > > > > > Jia Jung
> > > > > > --
> > > > > > Jia Jung
> > > > > >
> > > > > > Atmospheric Science Graduate Student
> > > > > > University of Houston
> > > > > > Department of Earth & Atmospheric Sciences
> > > > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > > > 346-247-9968
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > > --
> > > > Jia Jung
> > > >
> > > > Atmospheric Science Graduate Student
> > > > University of Houston
> > > > Department of Earth & Atmospheric Sciences
> > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > 346-247-9968 <(346)%20247-9968>
> > > >
> > > >
> > >
> > >
> >
> >
> > --
> > Jia Jung
> >
> > Atmospheric Science Graduate Student
> > University of Houston
> > Department of Earth & Atmospheric Sciences
> > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > 346-247-9968
> >
> >
>
>
--
Jia Jung
Atmospheric Science Graduate Student
University of Houston
Department of Earth & Atmospheric Sciences
helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
346-247-9968
------------------------------------------------
Subject: issue while compiling METv5.2
From: Julie Prestopnik
Time: Tue Nov 14 11:54:03 2017
Hi. Yes. Thank you for sending this along.
First, I see that you are compiling BUFRLIB with the pgi compilers,
but
from your make install log file it seems you are compiling MET using
g++.
It is important that you build MET's supporting libraries and MET with
the
same family of compilers, otherwise errors could occur.
Could you please run make clean, and then reconfigure and recompile
MET
using the same family of compilers as the supporting libraries, and
following the directions on this page?
https://dtcenter.org/met/users/support/online_tutorial/METv6.0/tutorial.php?name=compilation&category=configure
Please let us know if your problems are resolved or if you continue to
experience problems. If you continue to experience problems, please
pass
along your config.log file and your make_install.log file.
I hope this helps.
Thanks,
Julie
On Tue, Nov 14, 2017 at 10:08 AM, Jia Jung via RT <met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
>
> Dear Julie,
>
> Do you mean the config.log file in Met? I attached it now.
> I don't see config.log file in BURFLIB, so I just sent the script
file.
> Please find my attached file.
>
> Thanks.
>
> Best Regards,
> Jia Jung
>
>
> On Tue, Nov 14, 2017 at 10:53 AM, Julie Prestopnik via RT <
> met_help at ucar.edu
> > wrote:
>
> > Thank you! Could you please also send me your config.log file?
This
> will
> > provide me with some further information about your environment
that
> could
> > be useful.
> >
> > Thanks,
> > Julie
> >
> > On Tue, Nov 14, 2017 at 9:49 AM, Jia Jung via RT
<met_help at ucar.edu>
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> > >
> > > Dear Julie,
> > >
> > > I made a script file while compiling BURFLIB. I attached it.
Please
> find
> > > it.
> > > Thank you for your help
> > >
> > >
> > > Best Regards,
> > > Jia Jung
> > >
> > > On Tue, Nov 14, 2017 at 9:58 AM, Julie Prestopnik via RT <
> > > met_help at ucar.edu>
> > > wrote:
> > >
> > > > Thank you for attaching your make install log file and for
confirming
> > how
> > > > you compiled BUFRLIB. Could you also please send me your
config.log
> > > file?
> > > >
> > > > Thanks,
> > > > Julie
> > > >
> > > > On Mon, Nov 13, 2017 at 11:16 PM, Jia Jung via RT
<met_help at ucar.edu
> >
> > > > wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> > > > >
> > > > > Dear Julie,
> > > > >
> > > > > After your email, I changed the version from ver 5.2 to ver
6.0.
> > > Because
> > > > in
> > > > > my system, I have netCDF4 with HDF5.
> > > > > I compiled BUFRLIB with these comments because I am using
PGI(pgcc,
> > > > pgf90).
> > > > >
> > > > > pgcc -c -DUNDERSCORE *.c
> > > > > pgf90 -c -DUNDERSCORE -Mnosecond_underscore *.f *.F
> > > > > ar crv libbufr.a *.o
> > > > >
> > > > > However, I also have this error message, the same as
previous
> > message.
> > > > > Regarding a warning message(libnetcdf.so.7~), I am not sure
if it
> > > brings
> > > > > this problem because I have seen this message for a while. I
> compiled
> > > > > several codes without any problem. If you think that it may
affect
> > this
> > > > > compiling, I can ask it to my department administrator.
> > > > >
> > > > > ==================================================
> > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > > > /opt/netCDF/lib/libnetcdf_c++4.so, may conflict with
> libnetcdf.so.11
> > > > > /usr/bin/ld:
/tng4/users/jjung/tool/BUFRLIB/libbufr.a(ups.o):
> > > undefined
> > > > > reference to symbol '__mth_i_dpowi'
> > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding
symbols: DSO
> > > > missing
> > > > > from command line
> > > > > collect2: error: ld returned 1 exit status
> > > > > make[4]: *** [pb2nc] Error 1
> > > > > make[4]: Leaving directory `/tng4/users/jjung/tool/MET/me
> > > > > t-6.0_bugfix/src/tools/other/pb2nc'
> > > > > make[3]: *** [install-recursive] Error 1
> > > > > make[3]: Leaving directory `/tng4/users/jjung/tool/MET/me
> > > > > t-6.0_bugfix/src/tools/other'
> > > > > make[2]: *** [install-recursive] Error 1
> > > > > make[2]: Leaving directory `/tng4/users/jjung/tool/MET/me
> > > > > t-6.0_bugfix/src/tools'
> > > > > make[1]: *** [install-recursive] Error 1
> > > > > make[1]: Leaving directory `/tng4/users/jjung/tool/MET/
> > > > met-6.0_bugfix/src'
> > > > > make: *** [install-recursive] Error 1
> > > > > ===================================================
> > > > >
> > > > > I attached the log file again. please find it.
> > > > > Thank you for your help.
> > > > >
> > > > > Best Regards,
> > > > > Jia Jung
> > > > >
> > > > >
> > > > >
> > > > > On Mon, Nov 13, 2017 at 10:57 AM, Julie Prestopnik via RT <
> > > > > met_help at ucar.edu
> > > > > > wrote:
> > > > >
> > > > > > Hi. I see that you are having trouble compiling METv5.2.
If
> > > possible,
> > > > > I'd
> > > > > > suggest upgrading from METv5.2 to version 6.0. Be aware
though
> > that
> > > > > > version 6.0 is a pretty big change since we switched from
using
> > > NetCDF3
> > > > > to
> > > > > > NetCDF4. Practically speaking that requires NetCDF4 built
upon
> > HDF5.
> > > > So
> > > > > > the MET configuration/compilation process has changed
slightly.
> We
> > > are
> > > > > > currently working on version 6.1(to be released at the end
of
> this
> > > > month)
> > > > > > which will require NetCDF4 as well. So as long as you're
> > > recompiling,
> > > > > I'd
> > > > > > recommend using 6.0.
> > > > > >
> > > > > > If you plan to upgrade to 6.0, please follow the
compilation
> > > > instructions
> > > > > > in our online tutorial for METv6.0 and let us know if you
> > experience
> > > > any
> > > > > > problems or have questions:
> > > > > >
https://dtcenter.org/met/users/support/online_tutorial/METv6
> > > > > > .0/tutorial.php?name=compilation&category=req_libs
> > > > > >
> > > > > > I noticed this warning in your log file, which could also
be
> cause
> > > for
> > > > > > concern:
> > > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > > > > /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/
> > > > > libnetcdf_c++.so,
> > > > > > may conflict with libnetcdf.so.11
> > > > > >
> > > > > > If you'd like to continue with METv5.2, it looks like
there is a
> > > > linking
> > > > > > problem. However, I'd like to gather some more
information.
> > Please
> > > > > verify
> > > > > > that you installed BUFRLIB using the commands listed on
this page
> > for
> > > > > > installed BUFRLIB with METv5.2:
> > > > > >
https://dtcenter.org/met/users/support/online_tutorial/METv5
> > > > > > .2/tutorial.php?name=compilation&category=req_libs
> > > > > >
> > > > > > Then, please run "make clean", then run your "configure"
command
> as
> > > > > > directed on this page (having set up all of your
environment
> > > variables:
> > > > > >
https://dtcenter.org/met/users/support/online_tutorial/METv5
> > > > > > .2/tutorial.php?name=compilation&category=configure
> > > > > >
> > > > > > Then, please run "make_install' and send me your
config.log file
> > and
> > > > your
> > > > > > make_install.log file.
> > > > > >
> > > > > > Thank you.
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > >
> > > > > >
> > > > > > On Sun, Nov 12, 2017 at 2:30 PM, Jia Jung via RT <
> > met_help at ucar.edu>
> > > > > > wrote:
> > > > > >
> > > > > > >
> > > > > > > Sun Nov 12 14:30:14 2017: Request 82990 was acted upon.
> > > > > > > Transaction: Ticket created by helloiamjia at gmail.com
> > > > > > > Queue: met_help
> > > > > > > Subject: issue while compiling METv5.2
> > > > > > > Owner: Nobody
> > > > > > > Requestors: helloiamjia at gmail.com
> > > > > > > Status: new
> > > > > > > Ticket <URL: https://rt.rap.ucar.edu/rt/
> > > > Ticket/Display.html?id=82990
> > > > > >
> > > > > > >
> > > > > > >
> > > > > > > Dear,
> > > > > > >
> > > > > > > Hello, I am Jia Jung and a graduate student at the
University
> of
> > > > > Houston.
> > > > > > > I need to use pb2nc tool to deal with gdas data for my
> research.
> > > So,
> > > > I
> > > > > > > would like to use MET tools.
> > > > > > >
> > > > > > > I downloaded and compiled BUFRLIB_v10-2-3 by following
MET user
> > > guild
> > > > > pdf
> > > > > > > file.
> > > > > > > Anyway, I got an undefined reference error.
> > > > > > > =====================================================
> > > > > > > /usr/bin/ld:
/tng4/users/jjung/tool/BUFRLIB/libbufr.a(ups.o):
> > > > > undefined
> > > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding
symbols:
> > DSO
> > > > > > missing
> > > > > > > from command line
> > > > > > > collect2: error: ld returned 1 exit status
> > > > > > > =====================================================
> > > > > > >
> > > > > > > I also checked libburfr.a file and I confirmed that
there isn't
> > > > > > > '__mth_i_dpowi'.
> > > > > > >
> > > > > > > Can you tell me how to fix it? I attached my log file.
> > > > > > >
> > > > > > >
> > > > > > > Thank you in advance!
> > > > > > >
> > > > > > > Best Regards,
> > > > > > > Jia Jung
> > > > > > > --
> > > > > > > Jia Jung
> > > > > > >
> > > > > > > Atmospheric Science Graduate Student
> > > > > > > University of Houston
> > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > > > > 346-247-9968
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > > --
> > > > > Jia Jung
> > > > >
> > > > > Atmospheric Science Graduate Student
> > > > > University of Houston
> > > > > Department of Earth & Atmospheric Sciences
> > > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > > 346-247-9968 <(346)%20247-9968>
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> > > --
> > > Jia Jung
> > >
> > > Atmospheric Science Graduate Student
> > > University of Houston
> > > Department of Earth & Atmospheric Sciences
> > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > 346-247-9968
> > >
> > >
> >
> >
>
>
> --
> Jia Jung
>
> Atmospheric Science Graduate Student
> University of Houston
> Department of Earth & Atmospheric Sciences
> helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> 346-247-9968
>
>
------------------------------------------------
Subject: issue while compiling METv5.2
From: Jia Jung
Time: Tue Nov 14 12:26:52 2017
Dear Julie,
I didn't know that I need to define CXX. So I added CXX and F77 in my
bash
:
CXX=pgc++, CC=pgcc, FC=pgf90, F77=pgf77
In the website you sent me a link, pgCC is recommended C++ compiler
though,
my system is using PGI 17.4.
I found that pgc++ was used to be pgCC, but newer versions of PGI
don't
support the same name(pgCC).
Then, I got another error message, "error: more than one instance of
overloaded function "isnan" matches the argument list".
=======================================================
pgc++ -DHAVE_CONFIG_H -I. -I../../.. -I../../../src/basic/vx_cal
-I../../../src/basic/vx_config -I../../../src/basic/vx_log
-I../../../src/basic/vx_math -I../../../src/basic/vx_util
-I../../../src/libcode/vx_afm -I../../../src/libcode/vx_analysis_util
-I../../../src/libcode/vx_color -I../../../src/libcode/vx_data2d
-I../../../src/libcode/vx_data2d_factory
-I../../../src/libcode/vx_data2d_grib
-I../../../src/libcode/vx_data2d_grib2
-I../../../src/libcode/vx_data2d_nccf
-I../../../src/libcode/vx_data2d_nc_met
-I../../../src/libcode/vx_data2d_nc_pinterp
-I../../../src/libcode/vx_geodesy -I../../../src/libcode/vx_gnomon
-I../../../src/libcode/vx_grid -I../../../src/libcode/vx_gsl_prob
-I../../../src/libcode/vx_nav -I../../../src/libcode/vx_nc_util
-I../../../src/libcode/vx_pb_util -I../../../src/libcode/vx_plot_util
-I../../../src/libcode/vx_ps -I../../../src/libcode/vx_pxm
-I../../../src/libcode/vx_render -I../../../src/libcode/vx_regrid
-I../../../src/libcode/vx_shapedata -I../../../src/libcode/vx_solar
-I../../../src/libcode/vx_statistics
-I../../../src/libcode/vx_stat_out
-I../../../src/libcode/vx_time_series
-I../../../src/libcode/vx_tc_util
-I/opt/netCDF/include -I/usr/include
-I/tng4/users/jjung/tool/GSL/gsl/include -DBLOCK4
-DMET_BASE="\"/tng4/users/jjung/tool/MET/met-6.0_bugfix/share/met\""
-g -c
-o libvx_math_a-angles.o `test -f 'angles.cc' || echo './'`angles.cc
"is_bad_data.h", line 41: error: more than one instance of overloaded
function
"isnan" matches the argument list:
function "isnan(double)"
function "std::isnan(double)"
argument types are: (double)
if(fabs(a - bad_data_double) < default_tol || isnan(a))
return(1);
^
1 error detected in the compilation of "angles.cc".
==================================================================
I also sent make_install file and config.log file. Please check it.
Thank you... I hope this problem can be solved soon.
Best Regards,
Jia Jung
On Tue, Nov 14, 2017 at 12:54 PM, Julie Prestopnik via RT
<met_help at ucar.edu
> wrote:
> Hi. Yes. Thank you for sending this along.
>
> First, I see that you are compiling BUFRLIB with the pgi compilers,
but
> from your make install log file it seems you are compiling MET using
g++.
> It is important that you build MET's supporting libraries and MET
with the
> same family of compilers, otherwise errors could occur.
>
> Could you please run make clean, and then reconfigure and recompile
MET
> using the same family of compilers as the supporting libraries, and
> following the directions on this page?
> https://dtcenter.org/met/users/support/online_tutorial/
> METv6.0/tutorial.php?name=compilation&category=configure
>
> Please let us know if your problems are resolved or if you continue
to
> experience problems. If you continue to experience problems, please
pass
> along your config.log file and your make_install.log file.
>
> I hope this helps.
>
> Thanks,
> Julie
>
>
> On Tue, Nov 14, 2017 at 10:08 AM, Jia Jung via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> >
> > Dear Julie,
> >
> > Do you mean the config.log file in Met? I attached it now.
> > I don't see config.log file in BURFLIB, so I just sent the script
file.
> > Please find my attached file.
> >
> > Thanks.
> >
> > Best Regards,
> > Jia Jung
> >
> >
> > On Tue, Nov 14, 2017 at 10:53 AM, Julie Prestopnik via RT <
> > met_help at ucar.edu
> > > wrote:
> >
> > > Thank you! Could you please also send me your config.log file?
This
> > will
> > > provide me with some further information about your environment
that
> > could
> > > be useful.
> > >
> > > Thanks,
> > > Julie
> > >
> > > On Tue, Nov 14, 2017 at 9:49 AM, Jia Jung via RT
<met_help at ucar.edu>
> > > wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990
>
> > > >
> > > > Dear Julie,
> > > >
> > > > I made a script file while compiling BURFLIB. I attached it.
Please
> > find
> > > > it.
> > > > Thank you for your help
> > > >
> > > >
> > > > Best Regards,
> > > > Jia Jung
> > > >
> > > > On Tue, Nov 14, 2017 at 9:58 AM, Julie Prestopnik via RT <
> > > > met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > > Thank you for attaching your make install log file and for
> confirming
> > > how
> > > > > you compiled BUFRLIB. Could you also please send me your
> config.log
> > > > file?
> > > > >
> > > > > Thanks,
> > > > > Julie
> > > > >
> > > > > On Mon, Nov 13, 2017 at 11:16 PM, Jia Jung via RT <
> met_help at ucar.edu
> > >
> > > > > wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> > > > > >
> > > > > > Dear Julie,
> > > > > >
> > > > > > After your email, I changed the version from ver 5.2 to
ver 6.0.
> > > > Because
> > > > > in
> > > > > > my system, I have netCDF4 with HDF5.
> > > > > > I compiled BUFRLIB with these comments because I am using
> PGI(pgcc,
> > > > > pgf90).
> > > > > >
> > > > > > pgcc -c -DUNDERSCORE *.c
> > > > > > pgf90 -c -DUNDERSCORE -Mnosecond_underscore *.f *.F
> > > > > > ar crv libbufr.a *.o
> > > > > >
> > > > > > However, I also have this error message, the same as
previous
> > > message.
> > > > > > Regarding a warning message(libnetcdf.so.7~), I am not
sure if it
> > > > brings
> > > > > > this problem because I have seen this message for a while.
I
> > compiled
> > > > > > several codes without any problem. If you think that it
may
> affect
> > > this
> > > > > > compiling, I can ask it to my department administrator.
> > > > > >
> > > > > > ==================================================
> > > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > > > > /opt/netCDF/lib/libnetcdf_c++4.so, may conflict with
> > libnetcdf.so.11
> > > > > > /usr/bin/ld:
/tng4/users/jjung/tool/BUFRLIB/libbufr.a(ups.o):
> > > > undefined
> > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding
symbols:
> DSO
> > > > > missing
> > > > > > from command line
> > > > > > collect2: error: ld returned 1 exit status
> > > > > > make[4]: *** [pb2nc] Error 1
> > > > > > make[4]: Leaving directory `/tng4/users/jjung/tool/MET/me
> > > > > > t-6.0_bugfix/src/tools/other/pb2nc'
> > > > > > make[3]: *** [install-recursive] Error 1
> > > > > > make[3]: Leaving directory `/tng4/users/jjung/tool/MET/me
> > > > > > t-6.0_bugfix/src/tools/other'
> > > > > > make[2]: *** [install-recursive] Error 1
> > > > > > make[2]: Leaving directory `/tng4/users/jjung/tool/MET/me
> > > > > > t-6.0_bugfix/src/tools'
> > > > > > make[1]: *** [install-recursive] Error 1
> > > > > > make[1]: Leaving directory `/tng4/users/jjung/tool/MET/
> > > > > met-6.0_bugfix/src'
> > > > > > make: *** [install-recursive] Error 1
> > > > > > ===================================================
> > > > > >
> > > > > > I attached the log file again. please find it.
> > > > > > Thank you for your help.
> > > > > >
> > > > > > Best Regards,
> > > > > > Jia Jung
> > > > > >
> > > > > >
> > > > > >
> > > > > > On Mon, Nov 13, 2017 at 10:57 AM, Julie Prestopnik via RT
<
> > > > > > met_help at ucar.edu
> > > > > > > wrote:
> > > > > >
> > > > > > > Hi. I see that you are having trouble compiling
METv5.2. If
> > > > possible,
> > > > > > I'd
> > > > > > > suggest upgrading from METv5.2 to version 6.0. Be aware
though
> > > that
> > > > > > > version 6.0 is a pretty big change since we switched
from using
> > > > NetCDF3
> > > > > > to
> > > > > > > NetCDF4. Practically speaking that requires NetCDF4
built upon
> > > HDF5.
> > > > > So
> > > > > > > the MET configuration/compilation process has changed
slightly.
> > We
> > > > are
> > > > > > > currently working on version 6.1(to be released at the
end of
> > this
> > > > > month)
> > > > > > > which will require NetCDF4 as well. So as long as
you're
> > > > recompiling,
> > > > > > I'd
> > > > > > > recommend using 6.0.
> > > > > > >
> > > > > > > If you plan to upgrade to 6.0, please follow the
compilation
> > > > > instructions
> > > > > > > in our online tutorial for METv6.0 and let us know if
you
> > > experience
> > > > > any
> > > > > > > problems or have questions:
> > > > > > >
https://dtcenter.org/met/users/support/online_tutorial/METv6
> > > > > > > .0/tutorial.php?name=compilation&category=req_libs
> > > > > > >
> > > > > > > I noticed this warning in your log file, which could
also be
> > cause
> > > > for
> > > > > > > concern:
> > > > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > > > > > /usr/lib/gcc/x86_64-redhat-
linux/4.8.5/../../../../lib64/
> > > > > > libnetcdf_c++.so,
> > > > > > > may conflict with libnetcdf.so.11
> > > > > > >
> > > > > > > If you'd like to continue with METv5.2, it looks like
there is
> a
> > > > > linking
> > > > > > > problem. However, I'd like to gather some more
information.
> > > Please
> > > > > > verify
> > > > > > > that you installed BUFRLIB using the commands listed on
this
> page
> > > for
> > > > > > > installed BUFRLIB with METv5.2:
> > > > > > >
https://dtcenter.org/met/users/support/online_tutorial/METv5
> > > > > > > .2/tutorial.php?name=compilation&category=req_libs
> > > > > > >
> > > > > > > Then, please run "make clean", then run your "configure"
> command
> > as
> > > > > > > directed on this page (having set up all of your
environment
> > > > variables:
> > > > > > >
https://dtcenter.org/met/users/support/online_tutorial/METv5
> > > > > > > .2/tutorial.php?name=compilation&category=configure
> > > > > > >
> > > > > > > Then, please run "make_install' and send me your
config.log
> file
> > > and
> > > > > your
> > > > > > > make_install.log file.
> > > > > > >
> > > > > > > Thank you.
> > > > > > >
> > > > > > > Julie
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > On Sun, Nov 12, 2017 at 2:30 PM, Jia Jung via RT <
> > > met_help at ucar.edu>
> > > > > > > wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > Sun Nov 12 14:30:14 2017: Request 82990 was acted
upon.
> > > > > > > > Transaction: Ticket created by helloiamjia at gmail.com
> > > > > > > > Queue: met_help
> > > > > > > > Subject: issue while compiling METv5.2
> > > > > > > > Owner: Nobody
> > > > > > > > Requestors: helloiamjia at gmail.com
> > > > > > > > Status: new
> > > > > > > > Ticket <URL: https://rt.rap.ucar.edu/rt/
> > > > > Ticket/Display.html?id=82990
> > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > Dear,
> > > > > > > >
> > > > > > > > Hello, I am Jia Jung and a graduate student at the
University
> > of
> > > > > > Houston.
> > > > > > > > I need to use pb2nc tool to deal with gdas data for my
> > research.
> > > > So,
> > > > > I
> > > > > > > > would like to use MET tools.
> > > > > > > >
> > > > > > > > I downloaded and compiled BUFRLIB_v10-2-3 by following
MET
> user
> > > > guild
> > > > > > pdf
> > > > > > > > file.
> > > > > > > > Anyway, I got an undefined reference error.
> > > > > > > > =====================================================
> > > > > > > > /usr/bin/ld: /tng4/users/jjung/tool/
> BUFRLIB/libbufr.a(ups.o):
> > > > > > undefined
> > > > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding
> symbols:
> > > DSO
> > > > > > > missing
> > > > > > > > from command line
> > > > > > > > collect2: error: ld returned 1 exit status
> > > > > > > > =====================================================
> > > > > > > >
> > > > > > > > I also checked libburfr.a file and I confirmed that
there
> isn't
> > > > > > > > '__mth_i_dpowi'.
> > > > > > > >
> > > > > > > > Can you tell me how to fix it? I attached my log file.
> > > > > > > >
> > > > > > > >
> > > > > > > > Thank you in advance!
> > > > > > > >
> > > > > > > > Best Regards,
> > > > > > > > Jia Jung
> > > > > > > > --
> > > > > > > > Jia Jung
> > > > > > > >
> > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > University of Houston
> > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu
<jjung21 at uh.edu>
> > > > > > > > 346-247-9968
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > > > --
> > > > > > Jia Jung
> > > > > >
> > > > > > Atmospheric Science Graduate Student
> > > > > > University of Houston
> > > > > > Department of Earth & Atmospheric Sciences
> > > > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > > > 346-247-9968 <(346)%20247-9968>
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > > --
> > > > Jia Jung
> > > >
> > > > Atmospheric Science Graduate Student
> > > > University of Houston
> > > > Department of Earth & Atmospheric Sciences
> > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > 346-247-9968
> > > >
> > > >
> > >
> > >
> >
> >
> > --
> > Jia Jung
> >
> > Atmospheric Science Graduate Student
> > University of Houston
> > Department of Earth & Atmospheric Sciences
> > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > 346-247-9968
> >
> >
>
>
--
Jia Jung
Atmospheric Science Graduate Student
University of Houston
Department of Earth & Atmospheric Sciences
helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
346-247-9968
------------------------------------------------
Subject: issue while compiling METv5.2
From: Julie Prestopnik
Time: Tue Nov 14 15:13:31 2017
Thank you for sending your files. It looks like we need to do some
further
testing with PGI in order to resolve this problem. We have PGI
version
17.5 available for us to use. It'll take us a little while to test
this
out, but I will get back to you as soon as I can.
Julie
On Tue, Nov 14, 2017 at 12:26 PM, Jia Jung via RT <met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
>
> Dear Julie,
>
> I didn't know that I need to define CXX. So I added CXX and F77 in
my bash
> :
> CXX=pgc++, CC=pgcc, FC=pgf90, F77=pgf77
> In the website you sent me a link, pgCC is recommended C++ compiler
though,
> my system is using PGI 17.4.
> I found that pgc++ was used to be pgCC, but newer versions of PGI
don't
> support the same name(pgCC).
>
> Then, I got another error message, "error: more than one instance of
> overloaded function "isnan" matches the argument list".
>
> =======================================================
> pgc++ -DHAVE_CONFIG_H -I. -I../../.. -I../../../src/basic/vx_cal
> -I../../../src/basic/vx_config -I../../../src/basic/vx_log
> -I../../../src/basic/vx_math -I../../../src/basic/vx_util
> -I../../../src/libcode/vx_afm
-I../../../src/libcode/vx_analysis_util
> -I../../../src/libcode/vx_color -I../../../src/libcode/vx_data2d
> -I../../../src/libcode/vx_data2d_factory
> -I../../../src/libcode/vx_data2d_grib
> -I../../../src/libcode/vx_data2d_grib2
> -I../../../src/libcode/vx_data2d_nccf
> -I../../../src/libcode/vx_data2d_nc_met
> -I../../../src/libcode/vx_data2d_nc_pinterp
> -I../../../src/libcode/vx_geodesy -I../../../src/libcode/vx_gnomon
> -I../../../src/libcode/vx_grid -I../../../src/libcode/vx_gsl_prob
> -I../../../src/libcode/vx_nav -I../../../src/libcode/vx_nc_util
> -I../../../src/libcode/vx_pb_util
-I../../../src/libcode/vx_plot_util
> -I../../../src/libcode/vx_ps -I../../../src/libcode/vx_pxm
> -I../../../src/libcode/vx_render -I../../../src/libcode/vx_regrid
> -I../../../src/libcode/vx_shapedata -I../../../src/libcode/vx_solar
> -I../../../src/libcode/vx_statistics
-I../../../src/libcode/vx_stat_out
> -I../../../src/libcode/vx_time_series
-I../../../src/libcode/vx_tc_util
> -I/opt/netCDF/include -I/usr/include
> -I/tng4/users/jjung/tool/GSL/gsl/include -DBLOCK4
> -DMET_BASE="\"/tng4/users/jjung/tool/MET/met-6.0_bugfix/share/met\""
-g
> -c
> -o libvx_math_a-angles.o `test -f 'angles.cc' || echo './'`angles.cc
> "is_bad_data.h", line 41: error: more than one instance of
overloaded
> function
> "isnan" matches the argument list:
> function "isnan(double)"
> function "std::isnan(double)"
> argument types are: (double)
> if(fabs(a - bad_data_double) < default_tol || isnan(a))
return(1);
> ^
>
> 1 error detected in the compilation of "angles.cc".
> ==================================================================
>
>
> I also sent make_install file and config.log file. Please check it.
>
>
>
> Thank you... I hope this problem can be solved soon.
>
> Best Regards,
> Jia Jung
>
>
> On Tue, Nov 14, 2017 at 12:54 PM, Julie Prestopnik via RT <
> met_help at ucar.edu
> > wrote:
>
> > Hi. Yes. Thank you for sending this along.
> >
> > First, I see that you are compiling BUFRLIB with the pgi
compilers, but
> > from your make install log file it seems you are compiling MET
using g++.
> > It is important that you build MET's supporting libraries and MET
with
> the
> > same family of compilers, otherwise errors could occur.
> >
> > Could you please run make clean, and then reconfigure and
recompile MET
> > using the same family of compilers as the supporting libraries,
and
> > following the directions on this page?
> > https://dtcenter.org/met/users/support/online_tutorial/
> > METv6.0/tutorial.php?name=compilation&category=configure
> >
> > Please let us know if your problems are resolved or if you
continue to
> > experience problems. If you continue to experience problems,
please pass
> > along your config.log file and your make_install.log file.
> >
> > I hope this helps.
> >
> > Thanks,
> > Julie
> >
> >
> > On Tue, Nov 14, 2017 at 10:08 AM, Jia Jung via RT
<met_help at ucar.edu>
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> > >
> > > Dear Julie,
> > >
> > > Do you mean the config.log file in Met? I attached it now.
> > > I don't see config.log file in BURFLIB, so I just sent the
script file.
> > > Please find my attached file.
> > >
> > > Thanks.
> > >
> > > Best Regards,
> > > Jia Jung
> > >
> > >
> > > On Tue, Nov 14, 2017 at 10:53 AM, Julie Prestopnik via RT <
> > > met_help at ucar.edu
> > > > wrote:
> > >
> > > > Thank you! Could you please also send me your config.log
file? This
> > > will
> > > > provide me with some further information about your
environment that
> > > could
> > > > be useful.
> > > >
> > > > Thanks,
> > > > Julie
> > > >
> > > > On Tue, Nov 14, 2017 at 9:49 AM, Jia Jung via RT
<met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> > > > >
> > > > > Dear Julie,
> > > > >
> > > > > I made a script file while compiling BURFLIB. I attached it.
Please
> > > find
> > > > > it.
> > > > > Thank you for your help
> > > > >
> > > > >
> > > > > Best Regards,
> > > > > Jia Jung
> > > > >
> > > > > On Tue, Nov 14, 2017 at 9:58 AM, Julie Prestopnik via RT <
> > > > > met_help at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > > Thank you for attaching your make install log file and for
> > confirming
> > > > how
> > > > > > you compiled BUFRLIB. Could you also please send me your
> > config.log
> > > > > file?
> > > > > >
> > > > > > Thanks,
> > > > > > Julie
> > > > > >
> > > > > > On Mon, Nov 13, 2017 at 11:16 PM, Jia Jung via RT <
> > met_help at ucar.edu
> > > >
> > > > > > wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990
> >
> > > > > > >
> > > > > > > Dear Julie,
> > > > > > >
> > > > > > > After your email, I changed the version from ver 5.2 to
ver
> 6.0.
> > > > > Because
> > > > > > in
> > > > > > > my system, I have netCDF4 with HDF5.
> > > > > > > I compiled BUFRLIB with these comments because I am
using
> > PGI(pgcc,
> > > > > > pgf90).
> > > > > > >
> > > > > > > pgcc -c -DUNDERSCORE *.c
> > > > > > > pgf90 -c -DUNDERSCORE -Mnosecond_underscore *.f *.F
> > > > > > > ar crv libbufr.a *.o
> > > > > > >
> > > > > > > However, I also have this error message, the same as
previous
> > > > message.
> > > > > > > Regarding a warning message(libnetcdf.so.7~), I am not
sure if
> it
> > > > > brings
> > > > > > > this problem because I have seen this message for a
while. I
> > > compiled
> > > > > > > several codes without any problem. If you think that it
may
> > affect
> > > > this
> > > > > > > compiling, I can ask it to my department administrator.
> > > > > > >
> > > > > > > ==================================================
> > > > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > > > > > /opt/netCDF/lib/libnetcdf_c++4.so, may conflict with
> > > libnetcdf.so.11
> > > > > > > /usr/bin/ld:
/tng4/users/jjung/tool/BUFRLIB/libbufr.a(ups.o):
> > > > > undefined
> > > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding
symbols:
> > DSO
> > > > > > missing
> > > > > > > from command line
> > > > > > > collect2: error: ld returned 1 exit status
> > > > > > > make[4]: *** [pb2nc] Error 1
> > > > > > > make[4]: Leaving directory
`/tng4/users/jjung/tool/MET/me
> > > > > > > t-6.0_bugfix/src/tools/other/pb2nc'
> > > > > > > make[3]: *** [install-recursive] Error 1
> > > > > > > make[3]: Leaving directory
`/tng4/users/jjung/tool/MET/me
> > > > > > > t-6.0_bugfix/src/tools/other'
> > > > > > > make[2]: *** [install-recursive] Error 1
> > > > > > > make[2]: Leaving directory
`/tng4/users/jjung/tool/MET/me
> > > > > > > t-6.0_bugfix/src/tools'
> > > > > > > make[1]: *** [install-recursive] Error 1
> > > > > > > make[1]: Leaving directory `/tng4/users/jjung/tool/MET/
> > > > > > met-6.0_bugfix/src'
> > > > > > > make: *** [install-recursive] Error 1
> > > > > > > ===================================================
> > > > > > >
> > > > > > > I attached the log file again. please find it.
> > > > > > > Thank you for your help.
> > > > > > >
> > > > > > > Best Regards,
> > > > > > > Jia Jung
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > On Mon, Nov 13, 2017 at 10:57 AM, Julie Prestopnik via
RT <
> > > > > > > met_help at ucar.edu
> > > > > > > > wrote:
> > > > > > >
> > > > > > > > Hi. I see that you are having trouble compiling
METv5.2. If
> > > > > possible,
> > > > > > > I'd
> > > > > > > > suggest upgrading from METv5.2 to version 6.0. Be
aware
> though
> > > > that
> > > > > > > > version 6.0 is a pretty big change since we switched
from
> using
> > > > > NetCDF3
> > > > > > > to
> > > > > > > > NetCDF4. Practically speaking that requires NetCDF4
built
> upon
> > > > HDF5.
> > > > > > So
> > > > > > > > the MET configuration/compilation process has changed
> slightly.
> > > We
> > > > > are
> > > > > > > > currently working on version 6.1(to be released at the
end of
> > > this
> > > > > > month)
> > > > > > > > which will require NetCDF4 as well. So as long as
you're
> > > > > recompiling,
> > > > > > > I'd
> > > > > > > > recommend using 6.0.
> > > > > > > >
> > > > > > > > If you plan to upgrade to 6.0, please follow the
compilation
> > > > > > instructions
> > > > > > > > in our online tutorial for METv6.0 and let us know if
you
> > > > experience
> > > > > > any
> > > > > > > > problems or have questions:
> > > > > > > >
https://dtcenter.org/met/users/support/online_tutorial/METv6
> > > > > > > > .0/tutorial.php?name=compilation&category=req_libs
> > > > > > > >
> > > > > > > > I noticed this warning in your log file, which could
also be
> > > cause
> > > > > for
> > > > > > > > concern:
> > > > > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > > > > > > /usr/lib/gcc/x86_64-redhat-
linux/4.8.5/../../../../lib64/
> > > > > > > libnetcdf_c++.so,
> > > > > > > > may conflict with libnetcdf.so.11
> > > > > > > >
> > > > > > > > If you'd like to continue with METv5.2, it looks like
there
> is
> > a
> > > > > > linking
> > > > > > > > problem. However, I'd like to gather some more
information.
> > > > Please
> > > > > > > verify
> > > > > > > > that you installed BUFRLIB using the commands listed
on this
> > page
> > > > for
> > > > > > > > installed BUFRLIB with METv5.2:
> > > > > > > >
https://dtcenter.org/met/users/support/online_tutorial/METv5
> > > > > > > > .2/tutorial.php?name=compilation&category=req_libs
> > > > > > > >
> > > > > > > > Then, please run "make clean", then run your
"configure"
> > command
> > > as
> > > > > > > > directed on this page (having set up all of your
environment
> > > > > variables:
> > > > > > > >
https://dtcenter.org/met/users/support/online_tutorial/METv5
> > > > > > > > .2/tutorial.php?name=compilation&category=configure
> > > > > > > >
> > > > > > > > Then, please run "make_install' and send me your
config.log
> > file
> > > > and
> > > > > > your
> > > > > > > > make_install.log file.
> > > > > > > >
> > > > > > > > Thank you.
> > > > > > > >
> > > > > > > > Julie
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > On Sun, Nov 12, 2017 at 2:30 PM, Jia Jung via RT <
> > > > met_help at ucar.edu>
> > > > > > > > wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > Sun Nov 12 14:30:14 2017: Request 82990 was acted
upon.
> > > > > > > > > Transaction: Ticket created by helloiamjia at gmail.com
> > > > > > > > > Queue: met_help
> > > > > > > > > Subject: issue while compiling METv5.2
> > > > > > > > > Owner: Nobody
> > > > > > > > > Requestors: helloiamjia at gmail.com
> > > > > > > > > Status: new
> > > > > > > > > Ticket <URL: https://rt.rap.ucar.edu/rt/
> > > > > > Ticket/Display.html?id=82990
> > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > Dear,
> > > > > > > > >
> > > > > > > > > Hello, I am Jia Jung and a graduate student at the
> University
> > > of
> > > > > > > Houston.
> > > > > > > > > I need to use pb2nc tool to deal with gdas data for
my
> > > research.
> > > > > So,
> > > > > > I
> > > > > > > > > would like to use MET tools.
> > > > > > > > >
> > > > > > > > > I downloaded and compiled BUFRLIB_v10-2-3 by
following MET
> > user
> > > > > guild
> > > > > > > pdf
> > > > > > > > > file.
> > > > > > > > > Anyway, I got an undefined reference error.
> > > > > > > > >
=====================================================
> > > > > > > > > /usr/bin/ld: /tng4/users/jjung/tool/
> > BUFRLIB/libbufr.a(ups.o):
> > > > > > > undefined
> > > > > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding
> > symbols:
> > > > DSO
> > > > > > > > missing
> > > > > > > > > from command line
> > > > > > > > > collect2: error: ld returned 1 exit status
> > > > > > > > >
=====================================================
> > > > > > > > >
> > > > > > > > > I also checked libburfr.a file and I confirmed that
there
> > isn't
> > > > > > > > > '__mth_i_dpowi'.
> > > > > > > > >
> > > > > > > > > Can you tell me how to fix it? I attached my log
file.
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > Thank you in advance!
> > > > > > > > >
> > > > > > > > > Best Regards,
> > > > > > > > > Jia Jung
> > > > > > > > > --
> > > > > > > > > Jia Jung
> > > > > > > > >
> > > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > > University of Houston
> > > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu
<jjung21 at uh.edu>
> > > > > > > > > 346-247-9968
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > --
> > > > > > > Jia Jung
> > > > > > >
> > > > > > > Atmospheric Science Graduate Student
> > > > > > > University of Houston
> > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > > > > 346-247-9968 <(346)%20247-9968>
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > > --
> > > > > Jia Jung
> > > > >
> > > > > Atmospheric Science Graduate Student
> > > > > University of Houston
> > > > > Department of Earth & Atmospheric Sciences
> > > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > > 346-247-9968
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> > > --
> > > Jia Jung
> > >
> > > Atmospheric Science Graduate Student
> > > University of Houston
> > > Department of Earth & Atmospheric Sciences
> > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > 346-247-9968
> > >
> > >
> >
> >
>
>
> --
> Jia Jung
>
> Atmospheric Science Graduate Student
> University of Houston
> Department of Earth & Atmospheric Sciences
> helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> 346-247-9968
>
>
------------------------------------------------
Subject: issue while compiling METv5.2
From: Jia Jung
Time: Tue Nov 14 15:58:46 2017
Dear Julie,
Ok. I will wait for your response.
Thank you for your help. sincerely.
Best Regards,
Jia Jung
On Tue, Nov 14, 2017 at 4:13 PM, Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:
> Thank you for sending your files. It looks like we need to do some
further
> testing with PGI in order to resolve this problem. We have PGI
version
> 17.5 available for us to use. It'll take us a little while to test
this
> out, but I will get back to you as soon as I can.
>
> Julie
>
> On Tue, Nov 14, 2017 at 12:26 PM, Jia Jung via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> >
> > Dear Julie,
> >
> > I didn't know that I need to define CXX. So I added CXX and F77 in
my
> bash
> > :
> > CXX=pgc++, CC=pgcc, FC=pgf90, F77=pgf77
> > In the website you sent me a link, pgCC is recommended C++
compiler
> though,
> > my system is using PGI 17.4.
> > I found that pgc++ was used to be pgCC, but newer versions of PGI
don't
> > support the same name(pgCC).
> >
> > Then, I got another error message, "error: more than one instance
of
> > overloaded function "isnan" matches the argument list".
> >
> > =======================================================
> > pgc++ -DHAVE_CONFIG_H -I. -I../../.. -I../../../src/basic/vx_cal
> > -I../../../src/basic/vx_config -I../../../src/basic/vx_log
> > -I../../../src/basic/vx_math -I../../../src/basic/vx_util
> > -I../../../src/libcode/vx_afm
-I../../../src/libcode/vx_analysis_util
> > -I../../../src/libcode/vx_color -I../../../src/libcode/vx_data2d
> > -I../../../src/libcode/vx_data2d_factory
> > -I../../../src/libcode/vx_data2d_grib
> > -I../../../src/libcode/vx_data2d_grib2
> > -I../../../src/libcode/vx_data2d_nccf
> > -I../../../src/libcode/vx_data2d_nc_met
> > -I../../../src/libcode/vx_data2d_nc_pinterp
> > -I../../../src/libcode/vx_geodesy -I../../../src/libcode/vx_gnomon
> > -I../../../src/libcode/vx_grid -I../../../src/libcode/vx_gsl_prob
> > -I../../../src/libcode/vx_nav -I../../../src/libcode/vx_nc_util
> > -I../../../src/libcode/vx_pb_util
-I../../../src/libcode/vx_plot_util
> > -I../../../src/libcode/vx_ps -I../../../src/libcode/vx_pxm
> > -I../../../src/libcode/vx_render -I../../../src/libcode/vx_regrid
> > -I../../../src/libcode/vx_shapedata
-I../../../src/libcode/vx_solar
> > -I../../../src/libcode/vx_statistics
-I../../../src/libcode/vx_stat_out
> > -I../../../src/libcode/vx_time_series
-I../../../src/libcode/vx_tc_util
> > -I/opt/netCDF/include -I/usr/include
> > -I/tng4/users/jjung/tool/GSL/gsl/include -DBLOCK4
> > -DMET_BASE="\"/tng4/users/jjung/tool/MET/met-
6.0_bugfix/share/met\"" -g
> > -c
> > -o libvx_math_a-angles.o `test -f 'angles.cc' || echo
'./'`angles.cc
> > "is_bad_data.h", line 41: error: more than one instance of
overloaded
> > function
> > "isnan" matches the argument list:
> > function "isnan(double)"
> > function "std::isnan(double)"
> > argument types are: (double)
> > if(fabs(a - bad_data_double) < default_tol || isnan(a))
return(1);
> > ^
> >
> > 1 error detected in the compilation of "angles.cc".
> > ==================================================================
> >
> >
> > I also sent make_install file and config.log file. Please check
it.
> >
> >
> >
> > Thank you... I hope this problem can be solved soon.
> >
> > Best Regards,
> > Jia Jung
> >
> >
> > On Tue, Nov 14, 2017 at 12:54 PM, Julie Prestopnik via RT <
> > met_help at ucar.edu
> > > wrote:
> >
> > > Hi. Yes. Thank you for sending this along.
> > >
> > > First, I see that you are compiling BUFRLIB with the pgi
compilers, but
> > > from your make install log file it seems you are compiling MET
using
> g++.
> > > It is important that you build MET's supporting libraries and
MET with
> > the
> > > same family of compilers, otherwise errors could occur.
> > >
> > > Could you please run make clean, and then reconfigure and
recompile MET
> > > using the same family of compilers as the supporting libraries,
and
> > > following the directions on this page?
> > > https://dtcenter.org/met/users/support/online_tutorial/
> > > METv6.0/tutorial.php?name=compilation&category=configure
> > >
> > > Please let us know if your problems are resolved or if you
continue to
> > > experience problems. If you continue to experience problems,
please
> pass
> > > along your config.log file and your make_install.log file.
> > >
> > > I hope this helps.
> > >
> > > Thanks,
> > > Julie
> > >
> > >
> > > On Tue, Nov 14, 2017 at 10:08 AM, Jia Jung via RT
<met_help at ucar.edu>
> > > wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990
>
> > > >
> > > > Dear Julie,
> > > >
> > > > Do you mean the config.log file in Met? I attached it now.
> > > > I don't see config.log file in BURFLIB, so I just sent the
script
> file.
> > > > Please find my attached file.
> > > >
> > > > Thanks.
> > > >
> > > > Best Regards,
> > > > Jia Jung
> > > >
> > > >
> > > > On Tue, Nov 14, 2017 at 10:53 AM, Julie Prestopnik via RT <
> > > > met_help at ucar.edu
> > > > > wrote:
> > > >
> > > > > Thank you! Could you please also send me your config.log
file?
> This
> > > > will
> > > > > provide me with some further information about your
environment
> that
> > > > could
> > > > > be useful.
> > > > >
> > > > > Thanks,
> > > > > Julie
> > > > >
> > > > > On Tue, Nov 14, 2017 at 9:49 AM, Jia Jung via RT <
> met_help at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> > > > > >
> > > > > > Dear Julie,
> > > > > >
> > > > > > I made a script file while compiling BURFLIB. I attached
it.
> Please
> > > > find
> > > > > > it.
> > > > > > Thank you for your help
> > > > > >
> > > > > >
> > > > > > Best Regards,
> > > > > > Jia Jung
> > > > > >
> > > > > > On Tue, Nov 14, 2017 at 9:58 AM, Julie Prestopnik via RT <
> > > > > > met_help at ucar.edu>
> > > > > > wrote:
> > > > > >
> > > > > > > Thank you for attaching your make install log file and
for
> > > confirming
> > > > > how
> > > > > > > you compiled BUFRLIB. Could you also please send me
your
> > > config.log
> > > > > > file?
> > > > > > >
> > > > > > > Thanks,
> > > > > > > Julie
> > > > > > >
> > > > > > > On Mon, Nov 13, 2017 at 11:16 PM, Jia Jung via RT <
> > > met_help at ucar.edu
> > > > >
> > > > > > > wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> Ticket/Display.html?id=82990
> > >
> > > > > > > >
> > > > > > > > Dear Julie,
> > > > > > > >
> > > > > > > > After your email, I changed the version from ver 5.2
to ver
> > 6.0.
> > > > > > Because
> > > > > > > in
> > > > > > > > my system, I have netCDF4 with HDF5.
> > > > > > > > I compiled BUFRLIB with these comments because I am
using
> > > PGI(pgcc,
> > > > > > > pgf90).
> > > > > > > >
> > > > > > > > pgcc -c -DUNDERSCORE *.c
> > > > > > > > pgf90 -c -DUNDERSCORE -Mnosecond_underscore *.f *.F
> > > > > > > > ar crv libbufr.a *.o
> > > > > > > >
> > > > > > > > However, I also have this error message, the same as
previous
> > > > > message.
> > > > > > > > Regarding a warning message(libnetcdf.so.7~), I am not
sure
> if
> > it
> > > > > > brings
> > > > > > > > this problem because I have seen this message for a
while. I
> > > > compiled
> > > > > > > > several codes without any problem. If you think that
it may
> > > affect
> > > > > this
> > > > > > > > compiling, I can ask it to my department
administrator.
> > > > > > > >
> > > > > > > > ==================================================
> > > > > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > > > > > > /opt/netCDF/lib/libnetcdf_c++4.so, may conflict with
> > > > libnetcdf.so.11
> > > > > > > > /usr/bin/ld: /tng4/users/jjung/tool/
> BUFRLIB/libbufr.a(ups.o):
> > > > > > undefined
> > > > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding
> symbols:
> > > DSO
> > > > > > > missing
> > > > > > > > from command line
> > > > > > > > collect2: error: ld returned 1 exit status
> > > > > > > > make[4]: *** [pb2nc] Error 1
> > > > > > > > make[4]: Leaving directory
`/tng4/users/jjung/tool/MET/me
> > > > > > > > t-6.0_bugfix/src/tools/other/pb2nc'
> > > > > > > > make[3]: *** [install-recursive] Error 1
> > > > > > > > make[3]: Leaving directory
`/tng4/users/jjung/tool/MET/me
> > > > > > > > t-6.0_bugfix/src/tools/other'
> > > > > > > > make[2]: *** [install-recursive] Error 1
> > > > > > > > make[2]: Leaving directory
`/tng4/users/jjung/tool/MET/me
> > > > > > > > t-6.0_bugfix/src/tools'
> > > > > > > > make[1]: *** [install-recursive] Error 1
> > > > > > > > make[1]: Leaving directory
`/tng4/users/jjung/tool/MET/
> > > > > > > met-6.0_bugfix/src'
> > > > > > > > make: *** [install-recursive] Error 1
> > > > > > > > ===================================================
> > > > > > > >
> > > > > > > > I attached the log file again. please find it.
> > > > > > > > Thank you for your help.
> > > > > > > >
> > > > > > > > Best Regards,
> > > > > > > > Jia Jung
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > On Mon, Nov 13, 2017 at 10:57 AM, Julie Prestopnik via
RT <
> > > > > > > > met_help at ucar.edu
> > > > > > > > > wrote:
> > > > > > > >
> > > > > > > > > Hi. I see that you are having trouble compiling
METv5.2.
> If
> > > > > > possible,
> > > > > > > > I'd
> > > > > > > > > suggest upgrading from METv5.2 to version 6.0. Be
aware
> > though
> > > > > that
> > > > > > > > > version 6.0 is a pretty big change since we switched
from
> > using
> > > > > > NetCDF3
> > > > > > > > to
> > > > > > > > > NetCDF4. Practically speaking that requires NetCDF4
built
> > upon
> > > > > HDF5.
> > > > > > > So
> > > > > > > > > the MET configuration/compilation process has
changed
> > slightly.
> > > > We
> > > > > > are
> > > > > > > > > currently working on version 6.1(to be released at
the end
> of
> > > > this
> > > > > > > month)
> > > > > > > > > which will require NetCDF4 as well. So as long as
you're
> > > > > > recompiling,
> > > > > > > > I'd
> > > > > > > > > recommend using 6.0.
> > > > > > > > >
> > > > > > > > > If you plan to upgrade to 6.0, please follow the
> compilation
> > > > > > > instructions
> > > > > > > > > in our online tutorial for METv6.0 and let us know
if you
> > > > > experience
> > > > > > > any
> > > > > > > > > problems or have questions:
> > > > > > > > >
https://dtcenter.org/met/users/support/online_tutorial/
> METv6
> > > > > > > > > .0/tutorial.php?name=compilation&category=req_libs
> > > > > > > > >
> > > > > > > > > I noticed this warning in your log file, which could
also
> be
> > > > cause
> > > > > > for
> > > > > > > > > concern:
> > > > > > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > > > > > > > /usr/lib/gcc/x86_64-redhat-
linux/4.8.5/../../../../lib64/
> > > > > > > > libnetcdf_c++.so,
> > > > > > > > > may conflict with libnetcdf.so.11
> > > > > > > > >
> > > > > > > > > If you'd like to continue with METv5.2, it looks
like there
> > is
> > > a
> > > > > > > linking
> > > > > > > > > problem. However, I'd like to gather some more
> information.
> > > > > Please
> > > > > > > > verify
> > > > > > > > > that you installed BUFRLIB using the commands listed
on
> this
> > > page
> > > > > for
> > > > > > > > > installed BUFRLIB with METv5.2:
> > > > > > > > >
https://dtcenter.org/met/users/support/online_tutorial/
> METv5
> > > > > > > > > .2/tutorial.php?name=compilation&category=req_libs
> > > > > > > > >
> > > > > > > > > Then, please run "make clean", then run your
"configure"
> > > command
> > > > as
> > > > > > > > > directed on this page (having set up all of your
> environment
> > > > > > variables:
> > > > > > > > >
https://dtcenter.org/met/users/support/online_tutorial/
> METv5
> > > > > > > > > .2/tutorial.php?name=compilation&category=configure
> > > > > > > > >
> > > > > > > > > Then, please run "make_install' and send me your
config.log
> > > file
> > > > > and
> > > > > > > your
> > > > > > > > > make_install.log file.
> > > > > > > > >
> > > > > > > > > Thank you.
> > > > > > > > >
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > On Sun, Nov 12, 2017 at 2:30 PM, Jia Jung via RT <
> > > > > met_help at ucar.edu>
> > > > > > > > > wrote:
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > Sun Nov 12 14:30:14 2017: Request 82990 was acted
upon.
> > > > > > > > > > Transaction: Ticket created by
helloiamjia at gmail.com
> > > > > > > > > > Queue: met_help
> > > > > > > > > > Subject: issue while compiling METv5.2
> > > > > > > > > > Owner: Nobody
> > > > > > > > > > Requestors: helloiamjia at gmail.com
> > > > > > > > > > Status: new
> > > > > > > > > > Ticket <URL: https://rt.rap.ucar.edu/rt/
> > > > > > > Ticket/Display.html?id=82990
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > Dear,
> > > > > > > > > >
> > > > > > > > > > Hello, I am Jia Jung and a graduate student at the
> > University
> > > > of
> > > > > > > > Houston.
> > > > > > > > > > I need to use pb2nc tool to deal with gdas data
for my
> > > > research.
> > > > > > So,
> > > > > > > I
> > > > > > > > > > would like to use MET tools.
> > > > > > > > > >
> > > > > > > > > > I downloaded and compiled BUFRLIB_v10-2-3 by
following
> MET
> > > user
> > > > > > guild
> > > > > > > > pdf
> > > > > > > > > > file.
> > > > > > > > > > Anyway, I got an undefined reference error.
> > > > > > > > > >
=====================================================
> > > > > > > > > > /usr/bin/ld: /tng4/users/jjung/tool/
> > > BUFRLIB/libbufr.a(ups.o):
> > > > > > > > undefined
> > > > > > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error
adding
> > > symbols:
> > > > > DSO
> > > > > > > > > missing
> > > > > > > > > > from command line
> > > > > > > > > > collect2: error: ld returned 1 exit status
> > > > > > > > > >
=====================================================
> > > > > > > > > >
> > > > > > > > > > I also checked libburfr.a file and I confirmed
that there
> > > isn't
> > > > > > > > > > '__mth_i_dpowi'.
> > > > > > > > > >
> > > > > > > > > > Can you tell me how to fix it? I attached my log
file.
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > Thank you in advance!
> > > > > > > > > >
> > > > > > > > > > Best Regards,
> > > > > > > > > > Jia Jung
> > > > > > > > > > --
> > > > > > > > > > Jia Jung
> > > > > > > > > >
> > > > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > > > University of Houston
> > > > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu
<jjung21 at uh.edu>
> > > > > > > > > > 346-247-9968
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > --
> > > > > > > > Jia Jung
> > > > > > > >
> > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > University of Houston
> > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu
<jjung21 at uh.edu>
> > > > > > > > 346-247-9968 <(346)%20247-9968>
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > > > --
> > > > > > Jia Jung
> > > > > >
> > > > > > Atmospheric Science Graduate Student
> > > > > > University of Houston
> > > > > > Department of Earth & Atmospheric Sciences
> > > > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > > > 346-247-9968
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > > --
> > > > Jia Jung
> > > >
> > > > Atmospheric Science Graduate Student
> > > > University of Houston
> > > > Department of Earth & Atmospheric Sciences
> > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > 346-247-9968
> > > >
> > > >
> > >
> > >
> >
> >
> > --
> > Jia Jung
> >
> > Atmospheric Science Graduate Student
> > University of Houston
> > Department of Earth & Atmospheric Sciences
> > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > 346-247-9968
> >
> >
>
>
--
Jia Jung
Atmospheric Science Graduate Student
University of Houston
Department of Earth & Atmospheric Sciences
helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
346-247-9968
------------------------------------------------
Subject: issue while compiling METv5.2
From: Julie Prestopnik
Time: Fri Nov 17 12:14:13 2017
Hi. I just wanted to let you know that I am still working on this
issue.
Unfortunately, I have not been able to resolve the problem yet.
I and most of the met-help support staff will be out of the office all
of
next week for the holiday, however, I will continue working on this
issue
once I am back in the office if I am unable to resolve it today before
I
leave.
Julie
On Tue, Nov 14, 2017 at 3:58 PM, Jia Jung via RT <met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
>
> Dear Julie,
>
> Ok. I will wait for your response.
> Thank you for your help. sincerely.
>
> Best Regards,
> Jia Jung
>
>
> On Tue, Nov 14, 2017 at 4:13 PM, Julie Prestopnik via RT <
> met_help at ucar.edu>
> wrote:
>
> > Thank you for sending your files. It looks like we need to do
some
> further
> > testing with PGI in order to resolve this problem. We have PGI
version
> > 17.5 available for us to use. It'll take us a little while to
test this
> > out, but I will get back to you as soon as I can.
> >
> > Julie
> >
> > On Tue, Nov 14, 2017 at 12:26 PM, Jia Jung via RT
<met_help at ucar.edu>
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> > >
> > > Dear Julie,
> > >
> > > I didn't know that I need to define CXX. So I added CXX and F77
in my
> > bash
> > > :
> > > CXX=pgc++, CC=pgcc, FC=pgf90, F77=pgf77
> > > In the website you sent me a link, pgCC is recommended C++
compiler
> > though,
> > > my system is using PGI 17.4.
> > > I found that pgc++ was used to be pgCC, but newer versions of
PGI don't
> > > support the same name(pgCC).
> > >
> > > Then, I got another error message, "error: more than one
instance of
> > > overloaded function "isnan" matches the argument list".
> > >
> > > =======================================================
> > > pgc++ -DHAVE_CONFIG_H -I. -I../../..
-I../../../src/basic/vx_cal
> > > -I../../../src/basic/vx_config -I../../../src/basic/vx_log
> > > -I../../../src/basic/vx_math -I../../../src/basic/vx_util
> > > -I../../../src/libcode/vx_afm
-I../../../src/libcode/vx_analysis_util
> > > -I../../../src/libcode/vx_color -I../../../src/libcode/vx_data2d
> > > -I../../../src/libcode/vx_data2d_factory
> > > -I../../../src/libcode/vx_data2d_grib
> > > -I../../../src/libcode/vx_data2d_grib2
> > > -I../../../src/libcode/vx_data2d_nccf
> > > -I../../../src/libcode/vx_data2d_nc_met
> > > -I../../../src/libcode/vx_data2d_nc_pinterp
> > > -I../../../src/libcode/vx_geodesy
-I../../../src/libcode/vx_gnomon
> > > -I../../../src/libcode/vx_grid
-I../../../src/libcode/vx_gsl_prob
> > > -I../../../src/libcode/vx_nav -I../../../src/libcode/vx_nc_util
> > > -I../../../src/libcode/vx_pb_util
-I../../../src/libcode/vx_plot_util
> > > -I../../../src/libcode/vx_ps -I../../../src/libcode/vx_pxm
> > > -I../../../src/libcode/vx_render
-I../../../src/libcode/vx_regrid
> > > -I../../../src/libcode/vx_shapedata
-I../../../src/libcode/vx_solar
> > > -I../../../src/libcode/vx_statistics -I../../../src/libcode/vx_
> stat_out
> > > -I../../../src/libcode/vx_time_series
-I../../../src/libcode/vx_tc_
> util
> > > -I/opt/netCDF/include -I/usr/include
> > > -I/tng4/users/jjung/tool/GSL/gsl/include -DBLOCK4
> > > -DMET_BASE="\"/tng4/users/jjung/tool/MET/met-
6.0_bugfix/share/met\""
> -g
> > > -c
> > > -o libvx_math_a-angles.o `test -f 'angles.cc' || echo
'./'`angles.cc
> > > "is_bad_data.h", line 41: error: more than one instance of
overloaded
> > > function
> > > "isnan" matches the argument list:
> > > function "isnan(double)"
> > > function "std::isnan(double)"
> > > argument types are: (double)
> > > if(fabs(a - bad_data_double) < default_tol || isnan(a))
return(1);
> > > ^
> > >
> > > 1 error detected in the compilation of "angles.cc".
> > >
==================================================================
> > >
> > >
> > > I also sent make_install file and config.log file. Please check
it.
> > >
> > >
> > >
> > > Thank you... I hope this problem can be solved soon.
> > >
> > > Best Regards,
> > > Jia Jung
> > >
> > >
> > > On Tue, Nov 14, 2017 at 12:54 PM, Julie Prestopnik via RT <
> > > met_help at ucar.edu
> > > > wrote:
> > >
> > > > Hi. Yes. Thank you for sending this along.
> > > >
> > > > First, I see that you are compiling BUFRLIB with the pgi
compilers,
> but
> > > > from your make install log file it seems you are compiling MET
using
> > g++.
> > > > It is important that you build MET's supporting libraries and
MET
> with
> > > the
> > > > same family of compilers, otherwise errors could occur.
> > > >
> > > > Could you please run make clean, and then reconfigure and
recompile
> MET
> > > > using the same family of compilers as the supporting
libraries, and
> > > > following the directions on this page?
> > > > https://dtcenter.org/met/users/support/online_tutorial/
> > > > METv6.0/tutorial.php?name=compilation&category=configure
> > > >
> > > > Please let us know if your problems are resolved or if you
continue
> to
> > > > experience problems. If you continue to experience problems,
please
> > pass
> > > > along your config.log file and your make_install.log file.
> > > >
> > > > I hope this helps.
> > > >
> > > > Thanks,
> > > > Julie
> > > >
> > > >
> > > > On Tue, Nov 14, 2017 at 10:08 AM, Jia Jung via RT
<met_help at ucar.edu
> >
> > > > wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> > > > >
> > > > > Dear Julie,
> > > > >
> > > > > Do you mean the config.log file in Met? I attached it now.
> > > > > I don't see config.log file in BURFLIB, so I just sent the
script
> > file.
> > > > > Please find my attached file.
> > > > >
> > > > > Thanks.
> > > > >
> > > > > Best Regards,
> > > > > Jia Jung
> > > > >
> > > > >
> > > > > On Tue, Nov 14, 2017 at 10:53 AM, Julie Prestopnik via RT <
> > > > > met_help at ucar.edu
> > > > > > wrote:
> > > > >
> > > > > > Thank you! Could you please also send me your config.log
file?
> > This
> > > > > will
> > > > > > provide me with some further information about your
environment
> > that
> > > > > could
> > > > > > be useful.
> > > > > >
> > > > > > Thanks,
> > > > > > Julie
> > > > > >
> > > > > > On Tue, Nov 14, 2017 at 9:49 AM, Jia Jung via RT <
> > met_help at ucar.edu>
> > > > > > wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990
> >
> > > > > > >
> > > > > > > Dear Julie,
> > > > > > >
> > > > > > > I made a script file while compiling BURFLIB. I attached
it.
> > Please
> > > > > find
> > > > > > > it.
> > > > > > > Thank you for your help
> > > > > > >
> > > > > > >
> > > > > > > Best Regards,
> > > > > > > Jia Jung
> > > > > > >
> > > > > > > On Tue, Nov 14, 2017 at 9:58 AM, Julie Prestopnik via RT
<
> > > > > > > met_help at ucar.edu>
> > > > > > > wrote:
> > > > > > >
> > > > > > > > Thank you for attaching your make install log file and
for
> > > > confirming
> > > > > > how
> > > > > > > > you compiled BUFRLIB. Could you also please send me
your
> > > > config.log
> > > > > > > file?
> > > > > > > >
> > > > > > > > Thanks,
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Mon, Nov 13, 2017 at 11:16 PM, Jia Jung via RT <
> > > > met_help at ucar.edu
> > > > > >
> > > > > > > > wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> > Ticket/Display.html?id=82990
> > > >
> > > > > > > > >
> > > > > > > > > Dear Julie,
> > > > > > > > >
> > > > > > > > > After your email, I changed the version from ver 5.2
to ver
> > > 6.0.
> > > > > > > Because
> > > > > > > > in
> > > > > > > > > my system, I have netCDF4 with HDF5.
> > > > > > > > > I compiled BUFRLIB with these comments because I am
using
> > > > PGI(pgcc,
> > > > > > > > pgf90).
> > > > > > > > >
> > > > > > > > > pgcc -c -DUNDERSCORE *.c
> > > > > > > > > pgf90 -c -DUNDERSCORE -Mnosecond_underscore *.f
*.F
> > > > > > > > > ar crv libbufr.a *.o
> > > > > > > > >
> > > > > > > > > However, I also have this error message, the same as
> previous
> > > > > > message.
> > > > > > > > > Regarding a warning message(libnetcdf.so.7~), I am
not sure
> > if
> > > it
> > > > > > > brings
> > > > > > > > > this problem because I have seen this message for a
while.
> I
> > > > > compiled
> > > > > > > > > several codes without any problem. If you think that
it may
> > > > affect
> > > > > > this
> > > > > > > > > compiling, I can ask it to my department
administrator.
> > > > > > > > >
> > > > > > > > > ==================================================
> > > > > > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > > > > > > > /opt/netCDF/lib/libnetcdf_c++4.so, may conflict with
> > > > > libnetcdf.so.11
> > > > > > > > > /usr/bin/ld: /tng4/users/jjung/tool/
> > BUFRLIB/libbufr.a(ups.o):
> > > > > > > undefined
> > > > > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error adding
> > symbols:
> > > > DSO
> > > > > > > > missing
> > > > > > > > > from command line
> > > > > > > > > collect2: error: ld returned 1 exit status
> > > > > > > > > make[4]: *** [pb2nc] Error 1
> > > > > > > > > make[4]: Leaving directory
`/tng4/users/jjung/tool/MET/me
> > > > > > > > > t-6.0_bugfix/src/tools/other/pb2nc'
> > > > > > > > > make[3]: *** [install-recursive] Error 1
> > > > > > > > > make[3]: Leaving directory
`/tng4/users/jjung/tool/MET/me
> > > > > > > > > t-6.0_bugfix/src/tools/other'
> > > > > > > > > make[2]: *** [install-recursive] Error 1
> > > > > > > > > make[2]: Leaving directory
`/tng4/users/jjung/tool/MET/me
> > > > > > > > > t-6.0_bugfix/src/tools'
> > > > > > > > > make[1]: *** [install-recursive] Error 1
> > > > > > > > > make[1]: Leaving directory
`/tng4/users/jjung/tool/MET/
> > > > > > > > met-6.0_bugfix/src'
> > > > > > > > > make: *** [install-recursive] Error 1
> > > > > > > > > ===================================================
> > > > > > > > >
> > > > > > > > > I attached the log file again. please find it.
> > > > > > > > > Thank you for your help.
> > > > > > > > >
> > > > > > > > > Best Regards,
> > > > > > > > > Jia Jung
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > On Mon, Nov 13, 2017 at 10:57 AM, Julie Prestopnik
via RT <
> > > > > > > > > met_help at ucar.edu
> > > > > > > > > > wrote:
> > > > > > > > >
> > > > > > > > > > Hi. I see that you are having trouble compiling
METv5.2.
> > If
> > > > > > > possible,
> > > > > > > > > I'd
> > > > > > > > > > suggest upgrading from METv5.2 to version 6.0. Be
aware
> > > though
> > > > > > that
> > > > > > > > > > version 6.0 is a pretty big change since we
switched from
> > > using
> > > > > > > NetCDF3
> > > > > > > > > to
> > > > > > > > > > NetCDF4. Practically speaking that requires
NetCDF4 built
> > > upon
> > > > > > HDF5.
> > > > > > > > So
> > > > > > > > > > the MET configuration/compilation process has
changed
> > > slightly.
> > > > > We
> > > > > > > are
> > > > > > > > > > currently working on version 6.1(to be released at
the
> end
> > of
> > > > > this
> > > > > > > > month)
> > > > > > > > > > which will require NetCDF4 as well. So as long as
you're
> > > > > > > recompiling,
> > > > > > > > > I'd
> > > > > > > > > > recommend using 6.0.
> > > > > > > > > >
> > > > > > > > > > If you plan to upgrade to 6.0, please follow the
> > compilation
> > > > > > > > instructions
> > > > > > > > > > in our online tutorial for METv6.0 and let us know
if you
> > > > > > experience
> > > > > > > > any
> > > > > > > > > > problems or have questions:
> > > > > > > > > >
https://dtcenter.org/met/users/support/online_tutorial/
> > METv6
> > > > > > > > > > .0/tutorial.php?name=compilation&category=req_libs
> > > > > > > > > >
> > > > > > > > > > I noticed this warning in your log file, which
could also
> > be
> > > > > cause
> > > > > > > for
> > > > > > > > > > concern:
> > > > > > > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > > > > > > > > /usr/lib/gcc/x86_64-redhat-
> linux/4.8.5/../../../../lib64/
> > > > > > > > > libnetcdf_c++.so,
> > > > > > > > > > may conflict with libnetcdf.so.11
> > > > > > > > > >
> > > > > > > > > > If you'd like to continue with METv5.2, it looks
like
> there
> > > is
> > > > a
> > > > > > > > linking
> > > > > > > > > > problem. However, I'd like to gather some more
> > information.
> > > > > > Please
> > > > > > > > > verify
> > > > > > > > > > that you installed BUFRLIB using the commands
listed on
> > this
> > > > page
> > > > > > for
> > > > > > > > > > installed BUFRLIB with METv5.2:
> > > > > > > > > >
https://dtcenter.org/met/users/support/online_tutorial/
> > METv5
> > > > > > > > > > .2/tutorial.php?name=compilation&category=req_libs
> > > > > > > > > >
> > > > > > > > > > Then, please run "make clean", then run your
"configure"
> > > > command
> > > > > as
> > > > > > > > > > directed on this page (having set up all of your
> > environment
> > > > > > > variables:
> > > > > > > > > >
https://dtcenter.org/met/users/support/online_tutorial/
> > METv5
> > > > > > > > > >
.2/tutorial.php?name=compilation&category=configure
> > > > > > > > > >
> > > > > > > > > > Then, please run "make_install' and send me your
> config.log
> > > > file
> > > > > > and
> > > > > > > > your
> > > > > > > > > > make_install.log file.
> > > > > > > > > >
> > > > > > > > > > Thank you.
> > > > > > > > > >
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > On Sun, Nov 12, 2017 at 2:30 PM, Jia Jung via RT <
> > > > > > met_help at ucar.edu>
> > > > > > > > > > wrote:
> > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > Sun Nov 12 14:30:14 2017: Request 82990 was
acted upon.
> > > > > > > > > > > Transaction: Ticket created by
helloiamjia at gmail.com
> > > > > > > > > > > Queue: met_help
> > > > > > > > > > > Subject: issue while compiling METv5.2
> > > > > > > > > > > Owner: Nobody
> > > > > > > > > > > Requestors: helloiamjia at gmail.com
> > > > > > > > > > > Status: new
> > > > > > > > > > > Ticket <URL: https://rt.rap.ucar.edu/rt/
> > > > > > > > Ticket/Display.html?id=82990
> > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > Dear,
> > > > > > > > > > >
> > > > > > > > > > > Hello, I am Jia Jung and a graduate student at
the
> > > University
> > > > > of
> > > > > > > > > Houston.
> > > > > > > > > > > I need to use pb2nc tool to deal with gdas data
for my
> > > > > research.
> > > > > > > So,
> > > > > > > > I
> > > > > > > > > > > would like to use MET tools.
> > > > > > > > > > >
> > > > > > > > > > > I downloaded and compiled BUFRLIB_v10-2-3 by
following
> > MET
> > > > user
> > > > > > > guild
> > > > > > > > > pdf
> > > > > > > > > > > file.
> > > > > > > > > > > Anyway, I got an undefined reference error.
> > > > > > > > > > >
=====================================================
> > > > > > > > > > > /usr/bin/ld: /tng4/users/jjung/tool/
> > > > BUFRLIB/libbufr.a(ups.o):
> > > > > > > > > undefined
> > > > > > > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error
adding
> > > > symbols:
> > > > > > DSO
> > > > > > > > > > missing
> > > > > > > > > > > from command line
> > > > > > > > > > > collect2: error: ld returned 1 exit status
> > > > > > > > > > >
=====================================================
> > > > > > > > > > >
> > > > > > > > > > > I also checked libburfr.a file and I confirmed
that
> there
> > > > isn't
> > > > > > > > > > > '__mth_i_dpowi'.
> > > > > > > > > > >
> > > > > > > > > > > Can you tell me how to fix it? I attached my log
file.
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > Thank you in advance!
> > > > > > > > > > >
> > > > > > > > > > > Best Regards,
> > > > > > > > > > > Jia Jung
> > > > > > > > > > > --
> > > > > > > > > > > Jia Jung
> > > > > > > > > > >
> > > > > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > > > > University of Houston
> > > > > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu
<jjung21 at uh.edu
> >
> > > > > > > > > > > 346-247-9968
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > --
> > > > > > > > > Jia Jung
> > > > > > > > >
> > > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > > University of Houston
> > > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu
<jjung21 at uh.edu>
> > > > > > > > > 346-247-9968 <(346)%20247-9968>
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > --
> > > > > > > Jia Jung
> > > > > > >
> > > > > > > Atmospheric Science Graduate Student
> > > > > > > University of Houston
> > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > > > > 346-247-9968
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > > --
> > > > > Jia Jung
> > > > >
> > > > > Atmospheric Science Graduate Student
> > > > > University of Houston
> > > > > Department of Earth & Atmospheric Sciences
> > > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > > 346-247-9968
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> > > --
> > > Jia Jung
> > >
> > > Atmospheric Science Graduate Student
> > > University of Houston
> > > Department of Earth & Atmospheric Sciences
> > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > 346-247-9968
> > >
> > >
> >
> >
>
>
> --
> Jia Jung
>
> Atmospheric Science Graduate Student
> University of Houston
> Department of Earth & Atmospheric Sciences
> helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> 346-247-9968
>
>
------------------------------------------------
Subject: issue while compiling METv5.2
From: Jia Jung
Time: Fri Nov 17 13:02:09 2017
Thank you for letting me know.
I hope the problem is not too serious.
Regards,
Jia Jung
On Fri, Nov 17, 2017 at 1:14 PM, Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:
> Hi. I just wanted to let you know that I am still working on this
issue.
> Unfortunately, I have not been able to resolve the problem yet.
>
> I and most of the met-help support staff will be out of the office
all of
> next week for the holiday, however, I will continue working on this
issue
> once I am back in the office if I am unable to resolve it today
before I
> leave.
>
> Julie
>
> On Tue, Nov 14, 2017 at 3:58 PM, Jia Jung via RT <met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> >
> > Dear Julie,
> >
> > Ok. I will wait for your response.
> > Thank you for your help. sincerely.
> >
> > Best Regards,
> > Jia Jung
> >
> >
> > On Tue, Nov 14, 2017 at 4:13 PM, Julie Prestopnik via RT <
> > met_help at ucar.edu>
> > wrote:
> >
> > > Thank you for sending your files. It looks like we need to do
some
> > further
> > > testing with PGI in order to resolve this problem. We have PGI
version
> > > 17.5 available for us to use. It'll take us a little while to
test
> this
> > > out, but I will get back to you as soon as I can.
> > >
> > > Julie
> > >
> > > On Tue, Nov 14, 2017 at 12:26 PM, Jia Jung via RT
<met_help at ucar.edu>
> > > wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990
>
> > > >
> > > > Dear Julie,
> > > >
> > > > I didn't know that I need to define CXX. So I added CXX and
F77 in
> my
> > > bash
> > > > :
> > > > CXX=pgc++, CC=pgcc, FC=pgf90, F77=pgf77
> > > > In the website you sent me a link, pgCC is recommended C++
compiler
> > > though,
> > > > my system is using PGI 17.4.
> > > > I found that pgc++ was used to be pgCC, but newer versions of
PGI
> don't
> > > > support the same name(pgCC).
> > > >
> > > > Then, I got another error message, "error: more than one
instance of
> > > > overloaded function "isnan" matches the argument list".
> > > >
> > > > =======================================================
> > > > pgc++ -DHAVE_CONFIG_H -I. -I../../..
-I../../../src/basic/vx_cal
> > > > -I../../../src/basic/vx_config -I../../../src/basic/vx_log
> > > > -I../../../src/basic/vx_math -I../../../src/basic/vx_util
> > > > -I../../../src/libcode/vx_afm -I../../../src/libcode/vx_
> analysis_util
> > > > -I../../../src/libcode/vx_color
-I../../../src/libcode/vx_data2d
> > > > -I../../../src/libcode/vx_data2d_factory
> > > > -I../../../src/libcode/vx_data2d_grib
> > > > -I../../../src/libcode/vx_data2d_grib2
> > > > -I../../../src/libcode/vx_data2d_nccf
> > > > -I../../../src/libcode/vx_data2d_nc_met
> > > > -I../../../src/libcode/vx_data2d_nc_pinterp
> > > > -I../../../src/libcode/vx_geodesy
-I../../../src/libcode/vx_gnomon
> > > > -I../../../src/libcode/vx_grid
-I../../../src/libcode/vx_gsl_prob
> > > > -I../../../src/libcode/vx_nav
-I../../../src/libcode/vx_nc_util
> > > > -I../../../src/libcode/vx_pb_util -I../../../src/libcode/vx_
> plot_util
> > > > -I../../../src/libcode/vx_ps -I../../../src/libcode/vx_pxm
> > > > -I../../../src/libcode/vx_render
-I../../../src/libcode/vx_regrid
> > > > -I../../../src/libcode/vx_shapedata
-I../../../src/libcode/vx_solar
> > > > -I../../../src/libcode/vx_statistics
-I../../../src/libcode/vx_
> > stat_out
> > > > -I../../../src/libcode/vx_time_series
-I../../../src/libcode/vx_tc_
> > util
> > > > -I/opt/netCDF/include -I/usr/include
> > > > -I/tng4/users/jjung/tool/GSL/gsl/include -DBLOCK4
> > > > -DMET_BASE="\"/tng4/users/jjung/tool/MET/met-
6.0_bugfix/share/met\""
> > -g
> > > > -c
> > > > -o libvx_math_a-angles.o `test -f 'angles.cc' || echo
'./'`angles.cc
> > > > "is_bad_data.h", line 41: error: more than one instance of
overloaded
> > > > function
> > > > "isnan" matches the argument list:
> > > > function "isnan(double)"
> > > > function "std::isnan(double)"
> > > > argument types are: (double)
> > > > if(fabs(a - bad_data_double) < default_tol || isnan(a))
> return(1);
> > > > ^
> > > >
> > > > 1 error detected in the compilation of "angles.cc".
> > > >
==================================================================
> > > >
> > > >
> > > > I also sent make_install file and config.log file. Please
check it.
> > > >
> > > >
> > > >
> > > > Thank you... I hope this problem can be solved soon.
> > > >
> > > > Best Regards,
> > > > Jia Jung
> > > >
> > > >
> > > > On Tue, Nov 14, 2017 at 12:54 PM, Julie Prestopnik via RT <
> > > > met_help at ucar.edu
> > > > > wrote:
> > > >
> > > > > Hi. Yes. Thank you for sending this along.
> > > > >
> > > > > First, I see that you are compiling BUFRLIB with the pgi
compilers,
> > but
> > > > > from your make install log file it seems you are compiling
MET
> using
> > > g++.
> > > > > It is important that you build MET's supporting libraries
and MET
> > with
> > > > the
> > > > > same family of compilers, otherwise errors could occur.
> > > > >
> > > > > Could you please run make clean, and then reconfigure and
recompile
> > MET
> > > > > using the same family of compilers as the supporting
libraries, and
> > > > > following the directions on this page?
> > > > > https://dtcenter.org/met/users/support/online_tutorial/
> > > > > METv6.0/tutorial.php?name=compilation&category=configure
> > > > >
> > > > > Please let us know if your problems are resolved or if you
continue
> > to
> > > > > experience problems. If you continue to experience
problems,
> please
> > > pass
> > > > > along your config.log file and your make_install.log file.
> > > > >
> > > > > I hope this helps.
> > > > >
> > > > > Thanks,
> > > > > Julie
> > > > >
> > > > >
> > > > > On Tue, Nov 14, 2017 at 10:08 AM, Jia Jung via RT <
> met_help at ucar.edu
> > >
> > > > > wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> > > > > >
> > > > > > Dear Julie,
> > > > > >
> > > > > > Do you mean the config.log file in Met? I attached it now.
> > > > > > I don't see config.log file in BURFLIB, so I just sent the
script
> > > file.
> > > > > > Please find my attached file.
> > > > > >
> > > > > > Thanks.
> > > > > >
> > > > > > Best Regards,
> > > > > > Jia Jung
> > > > > >
> > > > > >
> > > > > > On Tue, Nov 14, 2017 at 10:53 AM, Julie Prestopnik via RT
<
> > > > > > met_help at ucar.edu
> > > > > > > wrote:
> > > > > >
> > > > > > > Thank you! Could you please also send me your
config.log file?
> > > This
> > > > > > will
> > > > > > > provide me with some further information about your
environment
> > > that
> > > > > > could
> > > > > > > be useful.
> > > > > > >
> > > > > > > Thanks,
> > > > > > > Julie
> > > > > > >
> > > > > > > On Tue, Nov 14, 2017 at 9:49 AM, Jia Jung via RT <
> > > met_help at ucar.edu>
> > > > > > > wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> Ticket/Display.html?id=82990
> > >
> > > > > > > >
> > > > > > > > Dear Julie,
> > > > > > > >
> > > > > > > > I made a script file while compiling BURFLIB. I
attached it.
> > > Please
> > > > > > find
> > > > > > > > it.
> > > > > > > > Thank you for your help
> > > > > > > >
> > > > > > > >
> > > > > > > > Best Regards,
> > > > > > > > Jia Jung
> > > > > > > >
> > > > > > > > On Tue, Nov 14, 2017 at 9:58 AM, Julie Prestopnik via
RT <
> > > > > > > > met_help at ucar.edu>
> > > > > > > > wrote:
> > > > > > > >
> > > > > > > > > Thank you for attaching your make install log file
and for
> > > > > confirming
> > > > > > > how
> > > > > > > > > you compiled BUFRLIB. Could you also please send me
your
> > > > > config.log
> > > > > > > > file?
> > > > > > > > >
> > > > > > > > > Thanks,
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Mon, Nov 13, 2017 at 11:16 PM, Jia Jung via RT <
> > > > > met_help at ucar.edu
> > > > > > >
> > > > > > > > > wrote:
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> > > Ticket/Display.html?id=82990
> > > > >
> > > > > > > > > >
> > > > > > > > > > Dear Julie,
> > > > > > > > > >
> > > > > > > > > > After your email, I changed the version from ver
5.2 to
> ver
> > > > 6.0.
> > > > > > > > Because
> > > > > > > > > in
> > > > > > > > > > my system, I have netCDF4 with HDF5.
> > > > > > > > > > I compiled BUFRLIB with these comments because I
am using
> > > > > PGI(pgcc,
> > > > > > > > > pgf90).
> > > > > > > > > >
> > > > > > > > > > pgcc -c -DUNDERSCORE *.c
> > > > > > > > > > pgf90 -c -DUNDERSCORE -Mnosecond_underscore *.f
*.F
> > > > > > > > > > ar crv libbufr.a *.o
> > > > > > > > > >
> > > > > > > > > > However, I also have this error message, the same
as
> > previous
> > > > > > > message.
> > > > > > > > > > Regarding a warning message(libnetcdf.so.7~), I am
not
> sure
> > > if
> > > > it
> > > > > > > > brings
> > > > > > > > > > this problem because I have seen this message for
a
> while.
> > I
> > > > > > compiled
> > > > > > > > > > several codes without any problem. If you think
that it
> may
> > > > > affect
> > > > > > > this
> > > > > > > > > > compiling, I can ask it to my department
administrator.
> > > > > > > > > >
> > > > > > > > > > ==================================================
> > > > > > > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > > > > > > > > /opt/netCDF/lib/libnetcdf_c++4.so, may conflict
with
> > > > > > libnetcdf.so.11
> > > > > > > > > > /usr/bin/ld: /tng4/users/jjung/tool/
> > > BUFRLIB/libbufr.a(ups.o):
> > > > > > > > undefined
> > > > > > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error
adding
> > > symbols:
> > > > > DSO
> > > > > > > > > missing
> > > > > > > > > > from command line
> > > > > > > > > > collect2: error: ld returned 1 exit status
> > > > > > > > > > make[4]: *** [pb2nc] Error 1
> > > > > > > > > > make[4]: Leaving directory
`/tng4/users/jjung/tool/MET/me
> > > > > > > > > > t-6.0_bugfix/src/tools/other/pb2nc'
> > > > > > > > > > make[3]: *** [install-recursive] Error 1
> > > > > > > > > > make[3]: Leaving directory
`/tng4/users/jjung/tool/MET/me
> > > > > > > > > > t-6.0_bugfix/src/tools/other'
> > > > > > > > > > make[2]: *** [install-recursive] Error 1
> > > > > > > > > > make[2]: Leaving directory
`/tng4/users/jjung/tool/MET/me
> > > > > > > > > > t-6.0_bugfix/src/tools'
> > > > > > > > > > make[1]: *** [install-recursive] Error 1
> > > > > > > > > > make[1]: Leaving directory
`/tng4/users/jjung/tool/MET/
> > > > > > > > > met-6.0_bugfix/src'
> > > > > > > > > > make: *** [install-recursive] Error 1
> > > > > > > > > >
===================================================
> > > > > > > > > >
> > > > > > > > > > I attached the log file again. please find it.
> > > > > > > > > > Thank you for your help.
> > > > > > > > > >
> > > > > > > > > > Best Regards,
> > > > > > > > > > Jia Jung
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > On Mon, Nov 13, 2017 at 10:57 AM, Julie Prestopnik
via
> RT <
> > > > > > > > > > met_help at ucar.edu
> > > > > > > > > > > wrote:
> > > > > > > > > >
> > > > > > > > > > > Hi. I see that you are having trouble compiling
> METv5.2.
> > > If
> > > > > > > > possible,
> > > > > > > > > > I'd
> > > > > > > > > > > suggest upgrading from METv5.2 to version 6.0.
Be
> aware
> > > > though
> > > > > > > that
> > > > > > > > > > > version 6.0 is a pretty big change since we
switched
> from
> > > > using
> > > > > > > > NetCDF3
> > > > > > > > > > to
> > > > > > > > > > > NetCDF4. Practically speaking that requires
NetCDF4
> built
> > > > upon
> > > > > > > HDF5.
> > > > > > > > > So
> > > > > > > > > > > the MET configuration/compilation process has
changed
> > > > slightly.
> > > > > > We
> > > > > > > > are
> > > > > > > > > > > currently working on version 6.1(to be released
at the
> > end
> > > of
> > > > > > this
> > > > > > > > > month)
> > > > > > > > > > > which will require NetCDF4 as well. So as long
as
> you're
> > > > > > > > recompiling,
> > > > > > > > > > I'd
> > > > > > > > > > > recommend using 6.0.
> > > > > > > > > > >
> > > > > > > > > > > If you plan to upgrade to 6.0, please follow the
> > > compilation
> > > > > > > > > instructions
> > > > > > > > > > > in our online tutorial for METv6.0 and let us
know if
> you
> > > > > > > experience
> > > > > > > > > any
> > > > > > > > > > > problems or have questions:
> > > > > > > > > > > https://dtcenter.org/met/
> users/support/online_tutorial/
> > > METv6
> > > > > > > > > > >
.0/tutorial.php?name=compilation&category=req_libs
> > > > > > > > > > >
> > > > > > > > > > > I noticed this warning in your log file, which
could
> also
> > > be
> > > > > > cause
> > > > > > > > for
> > > > > > > > > > > concern:
> > > > > > > > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > > > > > > > > > /usr/lib/gcc/x86_64-redhat-
> > linux/4.8.5/../../../../lib64/
> > > > > > > > > > libnetcdf_c++.so,
> > > > > > > > > > > may conflict with libnetcdf.so.11
> > > > > > > > > > >
> > > > > > > > > > > If you'd like to continue with METv5.2, it looks
like
> > there
> > > > is
> > > > > a
> > > > > > > > > linking
> > > > > > > > > > > problem. However, I'd like to gather some more
> > > information.
> > > > > > > Please
> > > > > > > > > > verify
> > > > > > > > > > > that you installed BUFRLIB using the commands
listed on
> > > this
> > > > > page
> > > > > > > for
> > > > > > > > > > > installed BUFRLIB with METv5.2:
> > > > > > > > > > > https://dtcenter.org/met/
> users/support/online_tutorial/
> > > METv5
> > > > > > > > > > >
.2/tutorial.php?name=compilation&category=req_libs
> > > > > > > > > > >
> > > > > > > > > > > Then, please run "make clean", then run your
> "configure"
> > > > > command
> > > > > > as
> > > > > > > > > > > directed on this page (having set up all of your
> > > environment
> > > > > > > > variables:
> > > > > > > > > > > https://dtcenter.org/met/
> users/support/online_tutorial/
> > > METv5
> > > > > > > > > > >
.2/tutorial.php?name=compilation&category=configure
> > > > > > > > > > >
> > > > > > > > > > > Then, please run "make_install' and send me your
> > config.log
> > > > > file
> > > > > > > and
> > > > > > > > > your
> > > > > > > > > > > make_install.log file.
> > > > > > > > > > >
> > > > > > > > > > > Thank you.
> > > > > > > > > > >
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > On Sun, Nov 12, 2017 at 2:30 PM, Jia Jung via RT
<
> > > > > > > met_help at ucar.edu>
> > > > > > > > > > > wrote:
> > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > Sun Nov 12 14:30:14 2017: Request 82990 was
acted
> upon.
> > > > > > > > > > > > Transaction: Ticket created by
helloiamjia at gmail.com
> > > > > > > > > > > > Queue: met_help
> > > > > > > > > > > > Subject: issue while compiling METv5.2
> > > > > > > > > > > > Owner: Nobody
> > > > > > > > > > > > Requestors: helloiamjia at gmail.com
> > > > > > > > > > > > Status: new
> > > > > > > > > > > > Ticket <URL: https://rt.rap.ucar.edu/rt/
> > > > > > > > > Ticket/Display.html?id=82990
> > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > Dear,
> > > > > > > > > > > >
> > > > > > > > > > > > Hello, I am Jia Jung and a graduate student at
the
> > > > University
> > > > > > of
> > > > > > > > > > Houston.
> > > > > > > > > > > > I need to use pb2nc tool to deal with gdas
data for
> my
> > > > > > research.
> > > > > > > > So,
> > > > > > > > > I
> > > > > > > > > > > > would like to use MET tools.
> > > > > > > > > > > >
> > > > > > > > > > > > I downloaded and compiled BUFRLIB_v10-2-3 by
> following
> > > MET
> > > > > user
> > > > > > > > guild
> > > > > > > > > > pdf
> > > > > > > > > > > > file.
> > > > > > > > > > > > Anyway, I got an undefined reference error.
> > > > > > > > > > > > ==============================
> =======================
> > > > > > > > > > > > /usr/bin/ld: /tng4/users/jjung/tool/
> > > > > BUFRLIB/libbufr.a(ups.o):
> > > > > > > > > > undefined
> > > > > > > > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > > > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error
adding
> > > > > symbols:
> > > > > > > DSO
> > > > > > > > > > > missing
> > > > > > > > > > > > from command line
> > > > > > > > > > > > collect2: error: ld returned 1 exit status
> > > > > > > > > > > > ==============================
> =======================
> > > > > > > > > > > >
> > > > > > > > > > > > I also checked libburfr.a file and I confirmed
that
> > there
> > > > > isn't
> > > > > > > > > > > > '__mth_i_dpowi'.
> > > > > > > > > > > >
> > > > > > > > > > > > Can you tell me how to fix it? I attached my
log
> file.
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > Thank you in advance!
> > > > > > > > > > > >
> > > > > > > > > > > > Best Regards,
> > > > > > > > > > > > Jia Jung
> > > > > > > > > > > > --
> > > > > > > > > > > > Jia Jung
> > > > > > > > > > > >
> > > > > > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > > > > > University of Houston
> > > > > > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu <
> jjung21 at uh.edu
> > >
> > > > > > > > > > > > 346-247-9968
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > --
> > > > > > > > > > Jia Jung
> > > > > > > > > >
> > > > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > > > University of Houston
> > > > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu
<jjung21 at uh.edu>
> > > > > > > > > > 346-247-9968 <(346)%20247-9968>
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > --
> > > > > > > > Jia Jung
> > > > > > > >
> > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > University of Houston
> > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu
<jjung21 at uh.edu>
> > > > > > > > 346-247-9968
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > > > --
> > > > > > Jia Jung
> > > > > >
> > > > > > Atmospheric Science Graduate Student
> > > > > > University of Houston
> > > > > > Department of Earth & Atmospheric Sciences
> > > > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > > > 346-247-9968
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > > --
> > > > Jia Jung
> > > >
> > > > Atmospheric Science Graduate Student
> > > > University of Houston
> > > > Department of Earth & Atmospheric Sciences
> > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > 346-247-9968
> > > >
> > > >
> > >
> > >
> >
> >
> > --
> > Jia Jung
> >
> > Atmospheric Science Graduate Student
> > University of Houston
> > Department of Earth & Atmospheric Sciences
> > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > 346-247-9968
> >
> >
>
>
--
Jia Jung
Atmospheric Science Graduate Student
University of Houston
Department of Earth & Atmospheric Sciences
helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
346-247-9968
------------------------------------------------
Subject: issue while compiling METv5.2
From: Julie Prestopnik
Time: Fri Dec 01 08:38:52 2017
Hello.
A member of our MET team was able to compile met-6.1 (planned release
later
this afternoon) successfully with PGI version 17.9 using pgc++ and
pgf90
(for both BUFRLIB and for MET). We were unable to reproduce the
error
that you received. Would it be possible for you to grab the met-6.1
release once it is available and try to compile that version? Do you
have
access to PGI version 17.9 so that you'd be able to use that same
compiler
version as well?
Thanks,
Julie
On Fri, Nov 17, 2017 at 1:02 PM, Jia Jung via RT <met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
>
> Thank you for letting me know.
>
> I hope the problem is not too serious.
>
>
> Regards,
> Jia Jung
>
>
> On Fri, Nov 17, 2017 at 1:14 PM, Julie Prestopnik via RT <
> met_help at ucar.edu>
> wrote:
>
> > Hi. I just wanted to let you know that I am still working on this
issue.
> > Unfortunately, I have not been able to resolve the problem yet.
> >
> > I and most of the met-help support staff will be out of the office
all of
> > next week for the holiday, however, I will continue working on
this issue
> > once I am back in the office if I am unable to resolve it today
before I
> > leave.
> >
> > Julie
> >
> > On Tue, Nov 14, 2017 at 3:58 PM, Jia Jung via RT
<met_help at ucar.edu>
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> > >
> > > Dear Julie,
> > >
> > > Ok. I will wait for your response.
> > > Thank you for your help. sincerely.
> > >
> > > Best Regards,
> > > Jia Jung
> > >
> > >
> > > On Tue, Nov 14, 2017 at 4:13 PM, Julie Prestopnik via RT <
> > > met_help at ucar.edu>
> > > wrote:
> > >
> > > > Thank you for sending your files. It looks like we need to do
some
> > > further
> > > > testing with PGI in order to resolve this problem. We have
PGI
> version
> > > > 17.5 available for us to use. It'll take us a little while to
test
> > this
> > > > out, but I will get back to you as soon as I can.
> > > >
> > > > Julie
> > > >
> > > > On Tue, Nov 14, 2017 at 12:26 PM, Jia Jung via RT
<met_help at ucar.edu
> >
> > > > wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> > > > >
> > > > > Dear Julie,
> > > > >
> > > > > I didn't know that I need to define CXX. So I added CXX and
F77 in
> > my
> > > > bash
> > > > > :
> > > > > CXX=pgc++, CC=pgcc, FC=pgf90, F77=pgf77
> > > > > In the website you sent me a link, pgCC is recommended C++
compiler
> > > > though,
> > > > > my system is using PGI 17.4.
> > > > > I found that pgc++ was used to be pgCC, but newer versions
of PGI
> > don't
> > > > > support the same name(pgCC).
> > > > >
> > > > > Then, I got another error message, "error: more than one
instance
> of
> > > > > overloaded function "isnan" matches the argument list".
> > > > >
> > > > > =======================================================
> > > > > pgc++ -DHAVE_CONFIG_H -I. -I../../..
-I../../../src/basic/vx_cal
> > > > > -I../../../src/basic/vx_config -I../../../src/basic/vx_log
> > > > > -I../../../src/basic/vx_math -I../../../src/basic/vx_util
> > > > > -I../../../src/libcode/vx_afm -I../../../src/libcode/vx_
> > analysis_util
> > > > > -I../../../src/libcode/vx_color
-I../../../src/libcode/vx_data2d
> > > > > -I../../../src/libcode/vx_data2d_factory
> > > > > -I../../../src/libcode/vx_data2d_grib
> > > > > -I../../../src/libcode/vx_data2d_grib2
> > > > > -I../../../src/libcode/vx_data2d_nccf
> > > > > -I../../../src/libcode/vx_data2d_nc_met
> > > > > -I../../../src/libcode/vx_data2d_nc_pinterp
> > > > > -I../../../src/libcode/vx_geodesy
-I../../../src/libcode/vx_gnomon
> > > > > -I../../../src/libcode/vx_grid
-I../../../src/libcode/vx_gsl_prob
> > > > > -I../../../src/libcode/vx_nav
-I../../../src/libcode/vx_nc_util
> > > > > -I../../../src/libcode/vx_pb_util -I../../../src/libcode/vx_
> > plot_util
> > > > > -I../../../src/libcode/vx_ps -I../../../src/libcode/vx_pxm
> > > > > -I../../../src/libcode/vx_render
-I../../../src/libcode/vx_regrid
> > > > > -I../../../src/libcode/vx_shapedata
-I../../../src/libcode/vx_
> solar
> > > > > -I../../../src/libcode/vx_statistics
-I../../../src/libcode/vx_
> > > stat_out
> > > > > -I../../../src/libcode/vx_time_series
> -I../../../src/libcode/vx_tc_
> > > util
> > > > > -I/opt/netCDF/include -I/usr/include
> > > > > -I/tng4/users/jjung/tool/GSL/gsl/include -DBLOCK4
> > > > > -DMET_BASE="\"/tng4/users/jjung/tool/MET/met-6.0_bugfix/
> share/met\""
> > > -g
> > > > > -c
> > > > > -o libvx_math_a-angles.o `test -f 'angles.cc' || echo
> './'`angles.cc
> > > > > "is_bad_data.h", line 41: error: more than one instance of
> overloaded
> > > > > function
> > > > > "isnan" matches the argument list:
> > > > > function "isnan(double)"
> > > > > function "std::isnan(double)"
> > > > > argument types are: (double)
> > > > > if(fabs(a - bad_data_double) < default_tol || isnan(a))
> > return(1);
> > > > > ^
> > > > >
> > > > > 1 error detected in the compilation of "angles.cc".
> > > > >
==================================================================
> > > > >
> > > > >
> > > > > I also sent make_install file and config.log file. Please
check it.
> > > > >
> > > > >
> > > > >
> > > > > Thank you... I hope this problem can be solved soon.
> > > > >
> > > > > Best Regards,
> > > > > Jia Jung
> > > > >
> > > > >
> > > > > On Tue, Nov 14, 2017 at 12:54 PM, Julie Prestopnik via RT <
> > > > > met_help at ucar.edu
> > > > > > wrote:
> > > > >
> > > > > > Hi. Yes. Thank you for sending this along.
> > > > > >
> > > > > > First, I see that you are compiling BUFRLIB with the pgi
> compilers,
> > > but
> > > > > > from your make install log file it seems you are compiling
MET
> > using
> > > > g++.
> > > > > > It is important that you build MET's supporting libraries
and MET
> > > with
> > > > > the
> > > > > > same family of compilers, otherwise errors could occur.
> > > > > >
> > > > > > Could you please run make clean, and then reconfigure and
> recompile
> > > MET
> > > > > > using the same family of compilers as the supporting
libraries,
> and
> > > > > > following the directions on this page?
> > > > > > https://dtcenter.org/met/users/support/online_tutorial/
> > > > > > METv6.0/tutorial.php?name=compilation&category=configure
> > > > > >
> > > > > > Please let us know if your problems are resolved or if you
> continue
> > > to
> > > > > > experience problems. If you continue to experience
problems,
> > please
> > > > pass
> > > > > > along your config.log file and your make_install.log file.
> > > > > >
> > > > > > I hope this helps.
> > > > > >
> > > > > > Thanks,
> > > > > > Julie
> > > > > >
> > > > > >
> > > > > > On Tue, Nov 14, 2017 at 10:08 AM, Jia Jung via RT <
> > met_help at ucar.edu
> > > >
> > > > > > wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990
> >
> > > > > > >
> > > > > > > Dear Julie,
> > > > > > >
> > > > > > > Do you mean the config.log file in Met? I attached it
now.
> > > > > > > I don't see config.log file in BURFLIB, so I just sent
the
> script
> > > > file.
> > > > > > > Please find my attached file.
> > > > > > >
> > > > > > > Thanks.
> > > > > > >
> > > > > > > Best Regards,
> > > > > > > Jia Jung
> > > > > > >
> > > > > > >
> > > > > > > On Tue, Nov 14, 2017 at 10:53 AM, Julie Prestopnik via
RT <
> > > > > > > met_help at ucar.edu
> > > > > > > > wrote:
> > > > > > >
> > > > > > > > Thank you! Could you please also send me your
config.log
> file?
> > > > This
> > > > > > > will
> > > > > > > > provide me with some further information about your
> environment
> > > > that
> > > > > > > could
> > > > > > > > be useful.
> > > > > > > >
> > > > > > > > Thanks,
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Tue, Nov 14, 2017 at 9:49 AM, Jia Jung via RT <
> > > > met_help at ucar.edu>
> > > > > > > > wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> > Ticket/Display.html?id=82990
> > > >
> > > > > > > > >
> > > > > > > > > Dear Julie,
> > > > > > > > >
> > > > > > > > > I made a script file while compiling BURFLIB. I
attached
> it.
> > > > Please
> > > > > > > find
> > > > > > > > > it.
> > > > > > > > > Thank you for your help
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > Best Regards,
> > > > > > > > > Jia Jung
> > > > > > > > >
> > > > > > > > > On Tue, Nov 14, 2017 at 9:58 AM, Julie Prestopnik
via RT <
> > > > > > > > > met_help at ucar.edu>
> > > > > > > > > wrote:
> > > > > > > > >
> > > > > > > > > > Thank you for attaching your make install log file
and
> for
> > > > > > confirming
> > > > > > > > how
> > > > > > > > > > you compiled BUFRLIB. Could you also please send
me your
> > > > > > config.log
> > > > > > > > > file?
> > > > > > > > > >
> > > > > > > > > > Thanks,
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Mon, Nov 13, 2017 at 11:16 PM, Jia Jung via RT
<
> > > > > > met_help at ucar.edu
> > > > > > > >
> > > > > > > > > > wrote:
> > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> > > > Ticket/Display.html?id=82990
> > > > > >
> > > > > > > > > > >
> > > > > > > > > > > Dear Julie,
> > > > > > > > > > >
> > > > > > > > > > > After your email, I changed the version from ver
5.2 to
> > ver
> > > > > 6.0.
> > > > > > > > > Because
> > > > > > > > > > in
> > > > > > > > > > > my system, I have netCDF4 with HDF5.
> > > > > > > > > > > I compiled BUFRLIB with these comments because I
am
> using
> > > > > > PGI(pgcc,
> > > > > > > > > > pgf90).
> > > > > > > > > > >
> > > > > > > > > > > pgcc -c -DUNDERSCORE *.c
> > > > > > > > > > > pgf90 -c -DUNDERSCORE -Mnosecond_underscore
*.f *.F
> > > > > > > > > > > ar crv libbufr.a *.o
> > > > > > > > > > >
> > > > > > > > > > > However, I also have this error message, the
same as
> > > previous
> > > > > > > > message.
> > > > > > > > > > > Regarding a warning message(libnetcdf.so.7~), I
am not
> > sure
> > > > if
> > > > > it
> > > > > > > > > brings
> > > > > > > > > > > this problem because I have seen this message
for a
> > while.
> > > I
> > > > > > > compiled
> > > > > > > > > > > several codes without any problem. If you think
that it
> > may
> > > > > > affect
> > > > > > > > this
> > > > > > > > > > > compiling, I can ask it to my department
administrator.
> > > > > > > > > > >
> > > > > > > > > > >
==================================================
> > > > > > > > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed by
> > > > > > > > > > > /opt/netCDF/lib/libnetcdf_c++4.so, may conflict
with
> > > > > > > libnetcdf.so.11
> > > > > > > > > > > /usr/bin/ld: /tng4/users/jjung/tool/
> > > > BUFRLIB/libbufr.a(ups.o):
> > > > > > > > > undefined
> > > > > > > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error
adding
> > > > symbols:
> > > > > > DSO
> > > > > > > > > > missing
> > > > > > > > > > > from command line
> > > > > > > > > > > collect2: error: ld returned 1 exit status
> > > > > > > > > > > make[4]: *** [pb2nc] Error 1
> > > > > > > > > > > make[4]: Leaving directory
> `/tng4/users/jjung/tool/MET/me
> > > > > > > > > > > t-6.0_bugfix/src/tools/other/pb2nc'
> > > > > > > > > > > make[3]: *** [install-recursive] Error 1
> > > > > > > > > > > make[3]: Leaving directory
> `/tng4/users/jjung/tool/MET/me
> > > > > > > > > > > t-6.0_bugfix/src/tools/other'
> > > > > > > > > > > make[2]: *** [install-recursive] Error 1
> > > > > > > > > > > make[2]: Leaving directory
> `/tng4/users/jjung/tool/MET/me
> > > > > > > > > > > t-6.0_bugfix/src/tools'
> > > > > > > > > > > make[1]: *** [install-recursive] Error 1
> > > > > > > > > > > make[1]: Leaving directory
`/tng4/users/jjung/tool/MET/
> > > > > > > > > > met-6.0_bugfix/src'
> > > > > > > > > > > make: *** [install-recursive] Error 1
> > > > > > > > > > >
===================================================
> > > > > > > > > > >
> > > > > > > > > > > I attached the log file again. please find it.
> > > > > > > > > > > Thank you for your help.
> > > > > > > > > > >
> > > > > > > > > > > Best Regards,
> > > > > > > > > > > Jia Jung
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > On Mon, Nov 13, 2017 at 10:57 AM, Julie
Prestopnik via
> > RT <
> > > > > > > > > > > met_help at ucar.edu
> > > > > > > > > > > > wrote:
> > > > > > > > > > >
> > > > > > > > > > > > Hi. I see that you are having trouble
compiling
> > METv5.2.
> > > > If
> > > > > > > > > possible,
> > > > > > > > > > > I'd
> > > > > > > > > > > > suggest upgrading from METv5.2 to version 6.0.
Be
> > aware
> > > > > though
> > > > > > > > that
> > > > > > > > > > > > version 6.0 is a pretty big change since we
switched
> > from
> > > > > using
> > > > > > > > > NetCDF3
> > > > > > > > > > > to
> > > > > > > > > > > > NetCDF4. Practically speaking that requires
NetCDF4
> > built
> > > > > upon
> > > > > > > > HDF5.
> > > > > > > > > > So
> > > > > > > > > > > > the MET configuration/compilation process has
changed
> > > > > slightly.
> > > > > > > We
> > > > > > > > > are
> > > > > > > > > > > > currently working on version 6.1(to be
released at
> the
> > > end
> > > > of
> > > > > > > this
> > > > > > > > > > month)
> > > > > > > > > > > > which will require NetCDF4 as well. So as
long as
> > you're
> > > > > > > > > recompiling,
> > > > > > > > > > > I'd
> > > > > > > > > > > > recommend using 6.0.
> > > > > > > > > > > >
> > > > > > > > > > > > If you plan to upgrade to 6.0, please follow
the
> > > > compilation
> > > > > > > > > > instructions
> > > > > > > > > > > > in our online tutorial for METv6.0 and let us
know if
> > you
> > > > > > > > experience
> > > > > > > > > > any
> > > > > > > > > > > > problems or have questions:
> > > > > > > > > > > > https://dtcenter.org/met/
> > users/support/online_tutorial/
> > > > METv6
> > > > > > > > > > > >
.0/tutorial.php?name=compilation&category=req_libs
> > > > > > > > > > > >
> > > > > > > > > > > > I noticed this warning in your log file, which
could
> > also
> > > > be
> > > > > > > cause
> > > > > > > > > for
> > > > > > > > > > > > concern:
> > > > > > > > > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed
by
> > > > > > > > > > > > /usr/lib/gcc/x86_64-redhat-
> > > linux/4.8.5/../../../../lib64/
> > > > > > > > > > > libnetcdf_c++.so,
> > > > > > > > > > > > may conflict with libnetcdf.so.11
> > > > > > > > > > > >
> > > > > > > > > > > > If you'd like to continue with METv5.2, it
looks like
> > > there
> > > > > is
> > > > > > a
> > > > > > > > > > linking
> > > > > > > > > > > > problem. However, I'd like to gather some
more
> > > > information.
> > > > > > > > Please
> > > > > > > > > > > verify
> > > > > > > > > > > > that you installed BUFRLIB using the commands
listed
> on
> > > > this
> > > > > > page
> > > > > > > > for
> > > > > > > > > > > > installed BUFRLIB with METv5.2:
> > > > > > > > > > > > https://dtcenter.org/met/
> > users/support/online_tutorial/
> > > > METv5
> > > > > > > > > > > >
.2/tutorial.php?name=compilation&category=req_libs
> > > > > > > > > > > >
> > > > > > > > > > > > Then, please run "make clean", then run your
> > "configure"
> > > > > > command
> > > > > > > as
> > > > > > > > > > > > directed on this page (having set up all of
your
> > > > environment
> > > > > > > > > variables:
> > > > > > > > > > > > https://dtcenter.org/met/
> > users/support/online_tutorial/
> > > > METv5
> > > > > > > > > > > >
.2/tutorial.php?name=compilation&category=configure
> > > > > > > > > > > >
> > > > > > > > > > > > Then, please run "make_install' and send me
your
> > > config.log
> > > > > > file
> > > > > > > > and
> > > > > > > > > > your
> > > > > > > > > > > > make_install.log file.
> > > > > > > > > > > >
> > > > > > > > > > > > Thank you.
> > > > > > > > > > > >
> > > > > > > > > > > > Julie
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > On Sun, Nov 12, 2017 at 2:30 PM, Jia Jung via
RT <
> > > > > > > > met_help at ucar.edu>
> > > > > > > > > > > > wrote:
> > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > Sun Nov 12 14:30:14 2017: Request 82990 was
acted
> > upon.
> > > > > > > > > > > > > Transaction: Ticket created by
> helloiamjia at gmail.com
> > > > > > > > > > > > > Queue: met_help
> > > > > > > > > > > > > Subject: issue while compiling METv5.2
> > > > > > > > > > > > > Owner: Nobody
> > > > > > > > > > > > > Requestors: helloiamjia at gmail.com
> > > > > > > > > > > > > Status: new
> > > > > > > > > > > > > Ticket <URL: https://rt.rap.ucar.edu/rt/
> > > > > > > > > > Ticket/Display.html?id=82990
> > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > Dear,
> > > > > > > > > > > > >
> > > > > > > > > > > > > Hello, I am Jia Jung and a graduate student
at the
> > > > > University
> > > > > > > of
> > > > > > > > > > > Houston.
> > > > > > > > > > > > > I need to use pb2nc tool to deal with gdas
data for
> > my
> > > > > > > research.
> > > > > > > > > So,
> > > > > > > > > > I
> > > > > > > > > > > > > would like to use MET tools.
> > > > > > > > > > > > >
> > > > > > > > > > > > > I downloaded and compiled BUFRLIB_v10-2-3 by
> > following
> > > > MET
> > > > > > user
> > > > > > > > > guild
> > > > > > > > > > > pdf
> > > > > > > > > > > > > file.
> > > > > > > > > > > > > Anyway, I got an undefined reference error.
> > > > > > > > > > > > > ==============================
> > =======================
> > > > > > > > > > > > > /usr/bin/ld: /tng4/users/jjung/tool/
> > > > > > BUFRLIB/libbufr.a(ups.o):
> > > > > > > > > > > undefined
> > > > > > > > > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > > > > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so:
error
> adding
> > > > > > symbols:
> > > > > > > > DSO
> > > > > > > > > > > > missing
> > > > > > > > > > > > > from command line
> > > > > > > > > > > > > collect2: error: ld returned 1 exit status
> > > > > > > > > > > > > ==============================
> > =======================
> > > > > > > > > > > > >
> > > > > > > > > > > > > I also checked libburfr.a file and I
confirmed that
> > > there
> > > > > > isn't
> > > > > > > > > > > > > '__mth_i_dpowi'.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Can you tell me how to fix it? I attached my
log
> > file.
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > Thank you in advance!
> > > > > > > > > > > > >
> > > > > > > > > > > > > Best Regards,
> > > > > > > > > > > > > Jia Jung
> > > > > > > > > > > > > --
> > > > > > > > > > > > > Jia Jung
> > > > > > > > > > > > >
> > > > > > > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > > > > > > University of Houston
> > > > > > > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu <
> > jjung21 at uh.edu
> > > >
> > > > > > > > > > > > > 346-247-9968
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > --
> > > > > > > > > > > Jia Jung
> > > > > > > > > > >
> > > > > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > > > > University of Houston
> > > > > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu
<jjung21 at uh.edu
> >
> > > > > > > > > > > 346-247-9968 <(346)%20247-9968>
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > --
> > > > > > > > > Jia Jung
> > > > > > > > >
> > > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > > University of Houston
> > > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu
<jjung21 at uh.edu>
> > > > > > > > > 346-247-9968
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > --
> > > > > > > Jia Jung
> > > > > > >
> > > > > > > Atmospheric Science Graduate Student
> > > > > > > University of Houston
> > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > > > > 346-247-9968
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > > --
> > > > > Jia Jung
> > > > >
> > > > > Atmospheric Science Graduate Student
> > > > > University of Houston
> > > > > Department of Earth & Atmospheric Sciences
> > > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > > 346-247-9968
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> > > --
> > > Jia Jung
> > >
> > > Atmospheric Science Graduate Student
> > > University of Houston
> > > Department of Earth & Atmospheric Sciences
> > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > 346-247-9968
> > >
> > >
> >
> >
>
>
> --
> Jia Jung
>
> Atmospheric Science Graduate Student
> University of Houston
> Department of Earth & Atmospheric Sciences
> helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> 346-247-9968
>
>
------------------------------------------------
Subject: issue while compiling METv5.2
From: Jia Jung
Time: Fri Dec 01 09:57:19 2017
Dear Julie,
That sounds very good. Sure, I have PGI 17.10 now.
I will try to compile met-6.1 after getting it today.
Thank you!
Bests,
Jia Jung
On Fri, Dec 1, 2017 at 9:38 AM, Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:
> Hello.
>
> A member of our MET team was able to compile met-6.1 (planned
release later
> this afternoon) successfully with PGI version 17.9 using pgc++ and
pgf90
> (for both BUFRLIB and for MET). We were unable to reproduce the
error
> that you received. Would it be possible for you to grab the met-6.1
> release once it is available and try to compile that version? Do
you have
> access to PGI version 17.9 so that you'd be able to use that same
compiler
> version as well?
>
> Thanks,
> Julie
>
> On Fri, Nov 17, 2017 at 1:02 PM, Jia Jung via RT <met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> >
> > Thank you for letting me know.
> >
> > I hope the problem is not too serious.
> >
> >
> > Regards,
> > Jia Jung
> >
> >
> > On Fri, Nov 17, 2017 at 1:14 PM, Julie Prestopnik via RT <
> > met_help at ucar.edu>
> > wrote:
> >
> > > Hi. I just wanted to let you know that I am still working on
this
> issue.
> > > Unfortunately, I have not been able to resolve the problem yet.
> > >
> > > I and most of the met-help support staff will be out of the
office all
> of
> > > next week for the holiday, however, I will continue working on
this
> issue
> > > once I am back in the office if I am unable to resolve it today
before
> I
> > > leave.
> > >
> > > Julie
> > >
> > > On Tue, Nov 14, 2017 at 3:58 PM, Jia Jung via RT
<met_help at ucar.edu>
> > > wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990
>
> > > >
> > > > Dear Julie,
> > > >
> > > > Ok. I will wait for your response.
> > > > Thank you for your help. sincerely.
> > > >
> > > > Best Regards,
> > > > Jia Jung
> > > >
> > > >
> > > > On Tue, Nov 14, 2017 at 4:13 PM, Julie Prestopnik via RT <
> > > > met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > > Thank you for sending your files. It looks like we need to
do some
> > > > further
> > > > > testing with PGI in order to resolve this problem. We have
PGI
> > version
> > > > > 17.5 available for us to use. It'll take us a little while
to test
> > > this
> > > > > out, but I will get back to you as soon as I can.
> > > > >
> > > > > Julie
> > > > >
> > > > > On Tue, Nov 14, 2017 at 12:26 PM, Jia Jung via RT <
> met_help at ucar.edu
> > >
> > > > > wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> > > > > >
> > > > > > Dear Julie,
> > > > > >
> > > > > > I didn't know that I need to define CXX. So I added CXX
and F77
> in
> > > my
> > > > > bash
> > > > > > :
> > > > > > CXX=pgc++, CC=pgcc, FC=pgf90, F77=pgf77
> > > > > > In the website you sent me a link, pgCC is recommended C++
> compiler
> > > > > though,
> > > > > > my system is using PGI 17.4.
> > > > > > I found that pgc++ was used to be pgCC, but newer versions
of PGI
> > > don't
> > > > > > support the same name(pgCC).
> > > > > >
> > > > > > Then, I got another error message, "error: more than one
instance
> > of
> > > > > > overloaded function "isnan" matches the argument list".
> > > > > >
> > > > > > =======================================================
> > > > > > pgc++ -DHAVE_CONFIG_H -I. -I../../..
-I../../../src/basic/vx_cal
> > > > > > -I../../../src/basic/vx_config -I../../../src/basic/vx_log
> > > > > > -I../../../src/basic/vx_math -I../../../src/basic/vx_util
> > > > > > -I../../../src/libcode/vx_afm -I../../../src/libcode/vx_
> > > analysis_util
> > > > > > -I../../../src/libcode/vx_color
-I../../../src/libcode/vx_data2d
> > > > > > -I../../../src/libcode/vx_data2d_factory
> > > > > > -I../../../src/libcode/vx_data2d_grib
> > > > > > -I../../../src/libcode/vx_data2d_grib2
> > > > > > -I../../../src/libcode/vx_data2d_nccf
> > > > > > -I../../../src/libcode/vx_data2d_nc_met
> > > > > > -I../../../src/libcode/vx_data2d_nc_pinterp
> > > > > > -I../../../src/libcode/vx_geodesy
-I../../../src/libcode/vx_
> gnomon
> > > > > > -I../../../src/libcode/vx_grid
-I../../../src/libcode/vx_gsl_
> prob
> > > > > > -I../../../src/libcode/vx_nav
-I../../../src/libcode/vx_nc_util
> > > > > > -I../../../src/libcode/vx_pb_util
-I../../../src/libcode/vx_
> > > plot_util
> > > > > > -I../../../src/libcode/vx_ps -I../../../src/libcode/vx_pxm
> > > > > > -I../../../src/libcode/vx_render
-I../../../src/libcode/vx_
> regrid
> > > > > > -I../../../src/libcode/vx_shapedata
-I../../../src/libcode/vx_
> > solar
> > > > > > -I../../../src/libcode/vx_statistics
-I../../../src/libcode/vx_
> > > > stat_out
> > > > > > -I../../../src/libcode/vx_time_series
> > -I../../../src/libcode/vx_tc_
> > > > util
> > > > > > -I/opt/netCDF/include -I/usr/include
> > > > > > -I/tng4/users/jjung/tool/GSL/gsl/include -DBLOCK4
> > > > > > -DMET_BASE="\"/tng4/users/jjung/tool/MET/met-6.0_bugfix/
> > share/met\""
> > > > -g
> > > > > > -c
> > > > > > -o libvx_math_a-angles.o `test -f 'angles.cc' || echo
> > './'`angles.cc
> > > > > > "is_bad_data.h", line 41: error: more than one instance of
> > overloaded
> > > > > > function
> > > > > > "isnan" matches the argument list:
> > > > > > function "isnan(double)"
> > > > > > function "std::isnan(double)"
> > > > > > argument types are: (double)
> > > > > > if(fabs(a - bad_data_double) < default_tol ||
isnan(a))
> > > return(1);
> > > > > > ^
> > > > > >
> > > > > > 1 error detected in the compilation of "angles.cc".
> > > > > >
============================================================
> ======
> > > > > >
> > > > > >
> > > > > > I also sent make_install file and config.log file. Please
check
> it.
> > > > > >
> > > > > >
> > > > > >
> > > > > > Thank you... I hope this problem can be solved soon.
> > > > > >
> > > > > > Best Regards,
> > > > > > Jia Jung
> > > > > >
> > > > > >
> > > > > > On Tue, Nov 14, 2017 at 12:54 PM, Julie Prestopnik via RT
<
> > > > > > met_help at ucar.edu
> > > > > > > wrote:
> > > > > >
> > > > > > > Hi. Yes. Thank you for sending this along.
> > > > > > >
> > > > > > > First, I see that you are compiling BUFRLIB with the pgi
> > compilers,
> > > > but
> > > > > > > from your make install log file it seems you are
compiling MET
> > > using
> > > > > g++.
> > > > > > > It is important that you build MET's supporting
libraries and
> MET
> > > > with
> > > > > > the
> > > > > > > same family of compilers, otherwise errors could occur.
> > > > > > >
> > > > > > > Could you please run make clean, and then reconfigure
and
> > recompile
> > > > MET
> > > > > > > using the same family of compilers as the supporting
libraries,
> > and
> > > > > > > following the directions on this page?
> > > > > > > https://dtcenter.org/met/users/support/online_tutorial/
> > > > > > > METv6.0/tutorial.php?name=compilation&category=configure
> > > > > > >
> > > > > > > Please let us know if your problems are resolved or if
you
> > continue
> > > > to
> > > > > > > experience problems. If you continue to experience
problems,
> > > please
> > > > > pass
> > > > > > > along your config.log file and your make_install.log
file.
> > > > > > >
> > > > > > > I hope this helps.
> > > > > > >
> > > > > > > Thanks,
> > > > > > > Julie
> > > > > > >
> > > > > > >
> > > > > > > On Tue, Nov 14, 2017 at 10:08 AM, Jia Jung via RT <
> > > met_help at ucar.edu
> > > > >
> > > > > > > wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> Ticket/Display.html?id=82990
> > >
> > > > > > > >
> > > > > > > > Dear Julie,
> > > > > > > >
> > > > > > > > Do you mean the config.log file in Met? I attached it
now.
> > > > > > > > I don't see config.log file in BURFLIB, so I just sent
the
> > script
> > > > > file.
> > > > > > > > Please find my attached file.
> > > > > > > >
> > > > > > > > Thanks.
> > > > > > > >
> > > > > > > > Best Regards,
> > > > > > > > Jia Jung
> > > > > > > >
> > > > > > > >
> > > > > > > > On Tue, Nov 14, 2017 at 10:53 AM, Julie Prestopnik via
RT <
> > > > > > > > met_help at ucar.edu
> > > > > > > > > wrote:
> > > > > > > >
> > > > > > > > > Thank you! Could you please also send me your
config.log
> > file?
> > > > > This
> > > > > > > > will
> > > > > > > > > provide me with some further information about your
> > environment
> > > > > that
> > > > > > > > could
> > > > > > > > > be useful.
> > > > > > > > >
> > > > > > > > > Thanks,
> > > > > > > > > Julie
> > > > > > > > >
> > > > > > > > > On Tue, Nov 14, 2017 at 9:49 AM, Jia Jung via RT <
> > > > > met_help at ucar.edu>
> > > > > > > > > wrote:
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> > > Ticket/Display.html?id=82990
> > > > >
> > > > > > > > > >
> > > > > > > > > > Dear Julie,
> > > > > > > > > >
> > > > > > > > > > I made a script file while compiling BURFLIB. I
attached
> > it.
> > > > > Please
> > > > > > > > find
> > > > > > > > > > it.
> > > > > > > > > > Thank you for your help
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > Best Regards,
> > > > > > > > > > Jia Jung
> > > > > > > > > >
> > > > > > > > > > On Tue, Nov 14, 2017 at 9:58 AM, Julie Prestopnik
via RT
> <
> > > > > > > > > > met_help at ucar.edu>
> > > > > > > > > > wrote:
> > > > > > > > > >
> > > > > > > > > > > Thank you for attaching your make install log
file and
> > for
> > > > > > > confirming
> > > > > > > > > how
> > > > > > > > > > > you compiled BUFRLIB. Could you also please
send me
> your
> > > > > > > config.log
> > > > > > > > > > file?
> > > > > > > > > > >
> > > > > > > > > > > Thanks,
> > > > > > > > > > > Julie
> > > > > > > > > > >
> > > > > > > > > > > On Mon, Nov 13, 2017 at 11:16 PM, Jia Jung via
RT <
> > > > > > > met_help at ucar.edu
> > > > > > > > >
> > > > > > > > > > > wrote:
> > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> > > > > Ticket/Display.html?id=82990
> > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > Dear Julie,
> > > > > > > > > > > >
> > > > > > > > > > > > After your email, I changed the version from
ver 5.2
> to
> > > ver
> > > > > > 6.0.
> > > > > > > > > > Because
> > > > > > > > > > > in
> > > > > > > > > > > > my system, I have netCDF4 with HDF5.
> > > > > > > > > > > > I compiled BUFRLIB with these comments because
I am
> > using
> > > > > > > PGI(pgcc,
> > > > > > > > > > > pgf90).
> > > > > > > > > > > >
> > > > > > > > > > > > pgcc -c -DUNDERSCORE *.c
> > > > > > > > > > > > pgf90 -c -DUNDERSCORE -Mnosecond_underscore
*.f
> *.F
> > > > > > > > > > > > ar crv libbufr.a *.o
> > > > > > > > > > > >
> > > > > > > > > > > > However, I also have this error message, the
same as
> > > > previous
> > > > > > > > > message.
> > > > > > > > > > > > Regarding a warning message(libnetcdf.so.7~),
I am
> not
> > > sure
> > > > > if
> > > > > > it
> > > > > > > > > > brings
> > > > > > > > > > > > this problem because I have seen this message
for a
> > > while.
> > > > I
> > > > > > > > compiled
> > > > > > > > > > > > several codes without any problem. If you
think that
> it
> > > may
> > > > > > > affect
> > > > > > > > > this
> > > > > > > > > > > > compiling, I can ask it to my department
> administrator.
> > > > > > > > > > > >
> > > > > > > > > > > >
==================================================
> > > > > > > > > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed
by
> > > > > > > > > > > > /opt/netCDF/lib/libnetcdf_c++4.so, may
conflict with
> > > > > > > > libnetcdf.so.11
> > > > > > > > > > > > /usr/bin/ld: /tng4/users/jjung/tool/
> > > > > BUFRLIB/libbufr.a(ups.o):
> > > > > > > > > > undefined
> > > > > > > > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > > > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so: error
adding
> > > > > symbols:
> > > > > > > DSO
> > > > > > > > > > > missing
> > > > > > > > > > > > from command line
> > > > > > > > > > > > collect2: error: ld returned 1 exit status
> > > > > > > > > > > > make[4]: *** [pb2nc] Error 1
> > > > > > > > > > > > make[4]: Leaving directory
> > `/tng4/users/jjung/tool/MET/me
> > > > > > > > > > > > t-6.0_bugfix/src/tools/other/pb2nc'
> > > > > > > > > > > > make[3]: *** [install-recursive] Error 1
> > > > > > > > > > > > make[3]: Leaving directory
> > `/tng4/users/jjung/tool/MET/me
> > > > > > > > > > > > t-6.0_bugfix/src/tools/other'
> > > > > > > > > > > > make[2]: *** [install-recursive] Error 1
> > > > > > > > > > > > make[2]: Leaving directory
> > `/tng4/users/jjung/tool/MET/me
> > > > > > > > > > > > t-6.0_bugfix/src/tools'
> > > > > > > > > > > > make[1]: *** [install-recursive] Error 1
> > > > > > > > > > > > make[1]: Leaving directory
> `/tng4/users/jjung/tool/MET/
> > > > > > > > > > > met-6.0_bugfix/src'
> > > > > > > > > > > > make: *** [install-recursive] Error 1
> > > > > > > > > > > >
===================================================
> > > > > > > > > > > >
> > > > > > > > > > > > I attached the log file again. please find it.
> > > > > > > > > > > > Thank you for your help.
> > > > > > > > > > > >
> > > > > > > > > > > > Best Regards,
> > > > > > > > > > > > Jia Jung
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > On Mon, Nov 13, 2017 at 10:57 AM, Julie
Prestopnik
> via
> > > RT <
> > > > > > > > > > > > met_help at ucar.edu
> > > > > > > > > > > > > wrote:
> > > > > > > > > > > >
> > > > > > > > > > > > > Hi. I see that you are having trouble
compiling
> > > METv5.2.
> > > > > If
> > > > > > > > > > possible,
> > > > > > > > > > > > I'd
> > > > > > > > > > > > > suggest upgrading from METv5.2 to version
6.0. Be
> > > aware
> > > > > > though
> > > > > > > > > that
> > > > > > > > > > > > > version 6.0 is a pretty big change since we
> switched
> > > from
> > > > > > using
> > > > > > > > > > NetCDF3
> > > > > > > > > > > > to
> > > > > > > > > > > > > NetCDF4. Practically speaking that requires
NetCDF4
> > > built
> > > > > > upon
> > > > > > > > > HDF5.
> > > > > > > > > > > So
> > > > > > > > > > > > > the MET configuration/compilation process
has
> changed
> > > > > > slightly.
> > > > > > > > We
> > > > > > > > > > are
> > > > > > > > > > > > > currently working on version 6.1(to be
released at
> > the
> > > > end
> > > > > of
> > > > > > > > this
> > > > > > > > > > > month)
> > > > > > > > > > > > > which will require NetCDF4 as well. So as
long as
> > > you're
> > > > > > > > > > recompiling,
> > > > > > > > > > > > I'd
> > > > > > > > > > > > > recommend using 6.0.
> > > > > > > > > > > > >
> > > > > > > > > > > > > If you plan to upgrade to 6.0, please follow
the
> > > > > compilation
> > > > > > > > > > > instructions
> > > > > > > > > > > > > in our online tutorial for METv6.0 and let
us know
> if
> > > you
> > > > > > > > > experience
> > > > > > > > > > > any
> > > > > > > > > > > > > problems or have questions:
> > > > > > > > > > > > > https://dtcenter.org/met/
> > > users/support/online_tutorial/
> > > > > METv6
> > > > > > > > > > > > >
.0/tutorial.php?name=compilation&category=req_libs
> > > > > > > > > > > > >
> > > > > > > > > > > > > I noticed this warning in your log file,
which
> could
> > > also
> > > > > be
> > > > > > > > cause
> > > > > > > > > > for
> > > > > > > > > > > > > concern:
> > > > > > > > > > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed
by
> > > > > > > > > > > > > /usr/lib/gcc/x86_64-redhat-
> > > > linux/4.8.5/../../../../lib64/
> > > > > > > > > > > > libnetcdf_c++.so,
> > > > > > > > > > > > > may conflict with libnetcdf.so.11
> > > > > > > > > > > > >
> > > > > > > > > > > > > If you'd like to continue with METv5.2, it
looks
> like
> > > > there
> > > > > > is
> > > > > > > a
> > > > > > > > > > > linking
> > > > > > > > > > > > > problem. However, I'd like to gather some
more
> > > > > information.
> > > > > > > > > Please
> > > > > > > > > > > > verify
> > > > > > > > > > > > > that you installed BUFRLIB using the
commands
> listed
> > on
> > > > > this
> > > > > > > page
> > > > > > > > > for
> > > > > > > > > > > > > installed BUFRLIB with METv5.2:
> > > > > > > > > > > > > https://dtcenter.org/met/
> > > users/support/online_tutorial/
> > > > > METv5
> > > > > > > > > > > > >
.2/tutorial.php?name=compilation&category=req_libs
> > > > > > > > > > > > >
> > > > > > > > > > > > > Then, please run "make clean", then run your
> > > "configure"
> > > > > > > command
> > > > > > > > as
> > > > > > > > > > > > > directed on this page (having set up all of
your
> > > > > environment
> > > > > > > > > > variables:
> > > > > > > > > > > > > https://dtcenter.org/met/
> > > users/support/online_tutorial/
> > > > > METv5
> > > > > > > > > > > > > .2/tutorial.php?name=
> compilation&category=configure
> > > > > > > > > > > > >
> > > > > > > > > > > > > Then, please run "make_install' and send me
your
> > > > config.log
> > > > > > > file
> > > > > > > > > and
> > > > > > > > > > > your
> > > > > > > > > > > > > make_install.log file.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Thank you.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Julie
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > On Sun, Nov 12, 2017 at 2:30 PM, Jia Jung
via RT <
> > > > > > > > > met_help at ucar.edu>
> > > > > > > > > > > > > wrote:
> > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Sun Nov 12 14:30:14 2017: Request 82990
was acted
> > > upon.
> > > > > > > > > > > > > > Transaction: Ticket created by
> > helloiamjia at gmail.com
> > > > > > > > > > > > > > Queue: met_help
> > > > > > > > > > > > > > Subject: issue while compiling
METv5.2
> > > > > > > > > > > > > > Owner: Nobody
> > > > > > > > > > > > > > Requestors: helloiamjia at gmail.com
> > > > > > > > > > > > > > Status: new
> > > > > > > > > > > > > > Ticket <URL: https://rt.rap.ucar.edu/rt/
> > > > > > > > > > > Ticket/Display.html?id=82990
> > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Dear,
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Hello, I am Jia Jung and a graduate
student at
> the
> > > > > > University
> > > > > > > > of
> > > > > > > > > > > > Houston.
> > > > > > > > > > > > > > I need to use pb2nc tool to deal with gdas
data
> for
> > > my
> > > > > > > > research.
> > > > > > > > > > So,
> > > > > > > > > > > I
> > > > > > > > > > > > > > would like to use MET tools.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > I downloaded and compiled BUFRLIB_v10-2-3
by
> > > following
> > > > > MET
> > > > > > > user
> > > > > > > > > > guild
> > > > > > > > > > > > pdf
> > > > > > > > > > > > > > file.
> > > > > > > > > > > > > > Anyway, I got an undefined reference
error.
> > > > > > > > > > > > > > ==============================
> > > =======================
> > > > > > > > > > > > > > /usr/bin/ld: /tng4/users/jjung/tool/
> > > > > > > BUFRLIB/libbufr.a(ups.o):
> > > > > > > > > > > > undefined
> > > > > > > > > > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > > > > > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so:
error
> > adding
> > > > > > > symbols:
> > > > > > > > > DSO
> > > > > > > > > > > > > missing
> > > > > > > > > > > > > > from command line
> > > > > > > > > > > > > > collect2: error: ld returned 1 exit status
> > > > > > > > > > > > > > ==============================
> > > =======================
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > I also checked libburfr.a file and I
confirmed
> that
> > > > there
> > > > > > > isn't
> > > > > > > > > > > > > > '__mth_i_dpowi'.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Can you tell me how to fix it? I attached
my log
> > > file.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Thank you in advance!
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Best Regards,
> > > > > > > > > > > > > > Jia Jung
> > > > > > > > > > > > > > --
> > > > > > > > > > > > > > Jia Jung
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > > > > > > > University of Houston
> > > > > > > > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu <
> > > jjung21 at uh.edu
> > > > >
> > > > > > > > > > > > > > 346-247-9968
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > --
> > > > > > > > > > > > Jia Jung
> > > > > > > > > > > >
> > > > > > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > > > > > University of Houston
> > > > > > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu <
> jjung21 at uh.edu
> > >
> > > > > > > > > > > > 346-247-9968 <(346)%20247-9968>
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > --
> > > > > > > > > > Jia Jung
> > > > > > > > > >
> > > > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > > > University of Houston
> > > > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu
<jjung21 at uh.edu>
> > > > > > > > > > 346-247-9968
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > --
> > > > > > > > Jia Jung
> > > > > > > >
> > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > University of Houston
> > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu
<jjung21 at uh.edu>
> > > > > > > > 346-247-9968
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > > > --
> > > > > > Jia Jung
> > > > > >
> > > > > > Atmospheric Science Graduate Student
> > > > > > University of Houston
> > > > > > Department of Earth & Atmospheric Sciences
> > > > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > > > 346-247-9968
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > > > --
> > > > Jia Jung
> > > >
> > > > Atmospheric Science Graduate Student
> > > > University of Houston
> > > > Department of Earth & Atmospheric Sciences
> > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > 346-247-9968
> > > >
> > > >
> > >
> > >
> >
> >
> > --
> > Jia Jung
> >
> > Atmospheric Science Graduate Student
> > University of Houston
> > Department of Earth & Atmospheric Sciences
> > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > 346-247-9968
> >
> >
>
>
--
Jia Jung
Atmospheric Science Graduate Student
University of Houston
Department of Earth & Atmospheric Sciences
helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
346-247-9968
------------------------------------------------
Subject: issue while compiling METv5.2
From: Julie Prestopnik
Time: Fri Dec 01 11:26:26 2017
My apologies - it looks like we will not release met-6.1 until Monday.
I
hope that will work out ok for your schedule. Also, I just wanted to
mention that we do not have access to PGI 17.10 and have not tested
with
that compiler version. Hopefully, all will go well when you compile
met-6.1 and its required libraries.
Julie
On Fri, Dec 1, 2017 at 9:57 AM, Jia Jung via RT <met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
>
> Dear Julie,
>
> That sounds very good. Sure, I have PGI 17.10 now.
> I will try to compile met-6.1 after getting it today.
>
> Thank you!
>
> Bests,
> Jia Jung
>
> On Fri, Dec 1, 2017 at 9:38 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> >
> wrote:
>
> > Hello.
> >
> > A member of our MET team was able to compile met-6.1 (planned
release
> later
> > this afternoon) successfully with PGI version 17.9 using pgc++ and
pgf90
> > (for both BUFRLIB and for MET). We were unable to reproduce the
error
> > that you received. Would it be possible for you to grab the met-
6.1
> > release once it is available and try to compile that version? Do
you
> have
> > access to PGI version 17.9 so that you'd be able to use that same
> compiler
> > version as well?
> >
> > Thanks,
> > Julie
> >
> > On Fri, Nov 17, 2017 at 1:02 PM, Jia Jung via RT
<met_help at ucar.edu>
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> > >
> > > Thank you for letting me know.
> > >
> > > I hope the problem is not too serious.
> > >
> > >
> > > Regards,
> > > Jia Jung
> > >
> > >
> > > On Fri, Nov 17, 2017 at 1:14 PM, Julie Prestopnik via RT <
> > > met_help at ucar.edu>
> > > wrote:
> > >
> > > > Hi. I just wanted to let you know that I am still working on
this
> > issue.
> > > > Unfortunately, I have not been able to resolve the problem
yet.
> > > >
> > > > I and most of the met-help support staff will be out of the
office
> all
> > of
> > > > next week for the holiday, however, I will continue working on
this
> > issue
> > > > once I am back in the office if I am unable to resolve it
today
> before
> > I
> > > > leave.
> > > >
> > > > Julie
> > > >
> > > > On Tue, Nov 14, 2017 at 3:58 PM, Jia Jung via RT
<met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990 >
> > > > >
> > > > > Dear Julie,
> > > > >
> > > > > Ok. I will wait for your response.
> > > > > Thank you for your help. sincerely.
> > > > >
> > > > > Best Regards,
> > > > > Jia Jung
> > > > >
> > > > >
> > > > > On Tue, Nov 14, 2017 at 4:13 PM, Julie Prestopnik via RT <
> > > > > met_help at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > > Thank you for sending your files. It looks like we need
to do
> some
> > > > > further
> > > > > > testing with PGI in order to resolve this problem. We
have PGI
> > > version
> > > > > > 17.5 available for us to use. It'll take us a little
while to
> test
> > > > this
> > > > > > out, but I will get back to you as soon as I can.
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > > On Tue, Nov 14, 2017 at 12:26 PM, Jia Jung via RT <
> > met_help at ucar.edu
> > > >
> > > > > > wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82990
> >
> > > > > > >
> > > > > > > Dear Julie,
> > > > > > >
> > > > > > > I didn't know that I need to define CXX. So I added CXX
and F77
> > in
> > > > my
> > > > > > bash
> > > > > > > :
> > > > > > > CXX=pgc++, CC=pgcc, FC=pgf90, F77=pgf77
> > > > > > > In the website you sent me a link, pgCC is recommended
C++
> > compiler
> > > > > > though,
> > > > > > > my system is using PGI 17.4.
> > > > > > > I found that pgc++ was used to be pgCC, but newer
versions of
> PGI
> > > > don't
> > > > > > > support the same name(pgCC).
> > > > > > >
> > > > > > > Then, I got another error message, "error: more than one
> instance
> > > of
> > > > > > > overloaded function "isnan" matches the argument list".
> > > > > > >
> > > > > > > =======================================================
> > > > > > > pgc++ -DHAVE_CONFIG_H -I. -I../../..
> -I../../../src/basic/vx_cal
> > > > > > > -I../../../src/basic/vx_config
-I../../../src/basic/vx_log
> > > > > > > -I../../../src/basic/vx_math
-I../../../src/basic/vx_util
> > > > > > > -I../../../src/libcode/vx_afm -I../../../src/libcode/vx_
> > > > analysis_util
> > > > > > > -I../../../src/libcode/vx_color
-I../../../src/libcode/vx_
> data2d
> > > > > > > -I../../../src/libcode/vx_data2d_factory
> > > > > > > -I../../../src/libcode/vx_data2d_grib
> > > > > > > -I../../../src/libcode/vx_data2d_grib2
> > > > > > > -I../../../src/libcode/vx_data2d_nccf
> > > > > > > -I../../../src/libcode/vx_data2d_nc_met
> > > > > > > -I../../../src/libcode/vx_data2d_nc_pinterp
> > > > > > > -I../../../src/libcode/vx_geodesy
-I../../../src/libcode/vx_
> > gnomon
> > > > > > > -I../../../src/libcode/vx_grid
-I../../../src/libcode/vx_gsl_
> > prob
> > > > > > > -I../../../src/libcode/vx_nav
-I../../../src/libcode/vx_nc_
> util
> > > > > > > -I../../../src/libcode/vx_pb_util
-I../../../src/libcode/vx_
> > > > plot_util
> > > > > > > -I../../../src/libcode/vx_ps
-I../../../src/libcode/vx_pxm
> > > > > > > -I../../../src/libcode/vx_render
-I../../../src/libcode/vx_
> > regrid
> > > > > > > -I../../../src/libcode/vx_shapedata
-I../../../src/libcode/vx_
> > > solar
> > > > > > > -I../../../src/libcode/vx_statistics
> -I../../../src/libcode/vx_
> > > > > stat_out
> > > > > > > -I../../../src/libcode/vx_time_series
> > > -I../../../src/libcode/vx_tc_
> > > > > util
> > > > > > > -I/opt/netCDF/include -I/usr/include
> > > > > > > -I/tng4/users/jjung/tool/GSL/gsl/include -DBLOCK4
> > > > > > > -DMET_BASE="\"/tng4/users/jjung/tool/MET/met-6.0_bugfix/
> > > share/met\""
> > > > > -g
> > > > > > > -c
> > > > > > > -o libvx_math_a-angles.o `test -f 'angles.cc' || echo
> > > './'`angles.cc
> > > > > > > "is_bad_data.h", line 41: error: more than one instance
of
> > > overloaded
> > > > > > > function
> > > > > > > "isnan" matches the argument list:
> > > > > > > function "isnan(double)"
> > > > > > > function "std::isnan(double)"
> > > > > > > argument types are: (double)
> > > > > > > if(fabs(a - bad_data_double) < default_tol ||
isnan(a))
> > > > return(1);
> > > > > > > ^
> > > > > > >
> > > > > > > 1 error detected in the compilation of "angles.cc".
> > > > > > >
============================================================
> > ======
> > > > > > >
> > > > > > >
> > > > > > > I also sent make_install file and config.log file.
Please check
> > it.
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > Thank you... I hope this problem can be solved soon.
> > > > > > >
> > > > > > > Best Regards,
> > > > > > > Jia Jung
> > > > > > >
> > > > > > >
> > > > > > > On Tue, Nov 14, 2017 at 12:54 PM, Julie Prestopnik via
RT <
> > > > > > > met_help at ucar.edu
> > > > > > > > wrote:
> > > > > > >
> > > > > > > > Hi. Yes. Thank you for sending this along.
> > > > > > > >
> > > > > > > > First, I see that you are compiling BUFRLIB with the
pgi
> > > compilers,
> > > > > but
> > > > > > > > from your make install log file it seems you are
compiling
> MET
> > > > using
> > > > > > g++.
> > > > > > > > It is important that you build MET's supporting
libraries and
> > MET
> > > > > with
> > > > > > > the
> > > > > > > > same family of compilers, otherwise errors could
occur.
> > > > > > > >
> > > > > > > > Could you please run make clean, and then reconfigure
and
> > > recompile
> > > > > MET
> > > > > > > > using the same family of compilers as the supporting
> libraries,
> > > and
> > > > > > > > following the directions on this page?
> > > > > > > >
https://dtcenter.org/met/users/support/online_tutorial/
> > > > > > > >
METv6.0/tutorial.php?name=compilation&category=configure
> > > > > > > >
> > > > > > > > Please let us know if your problems are resolved or if
you
> > > continue
> > > > > to
> > > > > > > > experience problems. If you continue to experience
problems,
> > > > please
> > > > > > pass
> > > > > > > > along your config.log file and your make_install.log
file.
> > > > > > > >
> > > > > > > > I hope this helps.
> > > > > > > >
> > > > > > > > Thanks,
> > > > > > > > Julie
> > > > > > > >
> > > > > > > >
> > > > > > > > On Tue, Nov 14, 2017 at 10:08 AM, Jia Jung via RT <
> > > > met_help at ucar.edu
> > > > > >
> > > > > > > > wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> > Ticket/Display.html?id=82990
> > > >
> > > > > > > > >
> > > > > > > > > Dear Julie,
> > > > > > > > >
> > > > > > > > > Do you mean the config.log file in Met? I attached
it now.
> > > > > > > > > I don't see config.log file in BURFLIB, so I just
sent the
> > > script
> > > > > > file.
> > > > > > > > > Please find my attached file.
> > > > > > > > >
> > > > > > > > > Thanks.
> > > > > > > > >
> > > > > > > > > Best Regards,
> > > > > > > > > Jia Jung
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > On Tue, Nov 14, 2017 at 10:53 AM, Julie Prestopnik
via RT <
> > > > > > > > > met_help at ucar.edu
> > > > > > > > > > wrote:
> > > > > > > > >
> > > > > > > > > > Thank you! Could you please also send me your
config.log
> > > file?
> > > > > > This
> > > > > > > > > will
> > > > > > > > > > provide me with some further information about
your
> > > environment
> > > > > > that
> > > > > > > > > could
> > > > > > > > > > be useful.
> > > > > > > > > >
> > > > > > > > > > Thanks,
> > > > > > > > > > Julie
> > > > > > > > > >
> > > > > > > > > > On Tue, Nov 14, 2017 at 9:49 AM, Jia Jung via RT <
> > > > > > met_help at ucar.edu>
> > > > > > > > > > wrote:
> > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> > > > Ticket/Display.html?id=82990
> > > > > >
> > > > > > > > > > >
> > > > > > > > > > > Dear Julie,
> > > > > > > > > > >
> > > > > > > > > > > I made a script file while compiling BURFLIB. I
> attached
> > > it.
> > > > > > Please
> > > > > > > > > find
> > > > > > > > > > > it.
> > > > > > > > > > > Thank you for your help
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > Best Regards,
> > > > > > > > > > > Jia Jung
> > > > > > > > > > >
> > > > > > > > > > > On Tue, Nov 14, 2017 at 9:58 AM, Julie
Prestopnik via
> RT
> > <
> > > > > > > > > > > met_help at ucar.edu>
> > > > > > > > > > > wrote:
> > > > > > > > > > >
> > > > > > > > > > > > Thank you for attaching your make install log
file
> and
> > > for
> > > > > > > > confirming
> > > > > > > > > > how
> > > > > > > > > > > > you compiled BUFRLIB. Could you also please
send me
> > your
> > > > > > > > config.log
> > > > > > > > > > > file?
> > > > > > > > > > > >
> > > > > > > > > > > > Thanks,
> > > > > > > > > > > > Julie
> > > > > > > > > > > >
> > > > > > > > > > > > On Mon, Nov 13, 2017 at 11:16 PM, Jia Jung via
RT <
> > > > > > > > met_help at ucar.edu
> > > > > > > > > >
> > > > > > > > > > > > wrote:
> > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> > > > > > Ticket/Display.html?id=82990
> > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > Dear Julie,
> > > > > > > > > > > > >
> > > > > > > > > > > > > After your email, I changed the version from
ver
> 5.2
> > to
> > > > ver
> > > > > > > 6.0.
> > > > > > > > > > > Because
> > > > > > > > > > > > in
> > > > > > > > > > > > > my system, I have netCDF4 with HDF5.
> > > > > > > > > > > > > I compiled BUFRLIB with these comments
because I am
> > > using
> > > > > > > > PGI(pgcc,
> > > > > > > > > > > > pgf90).
> > > > > > > > > > > > >
> > > > > > > > > > > > > pgcc -c -DUNDERSCORE *.c
> > > > > > > > > > > > > pgf90 -c -DUNDERSCORE
-Mnosecond_underscore *.f
> > *.F
> > > > > > > > > > > > > ar crv libbufr.a *.o
> > > > > > > > > > > > >
> > > > > > > > > > > > > However, I also have this error message, the
same
> as
> > > > > previous
> > > > > > > > > > message.
> > > > > > > > > > > > > Regarding a warning
message(libnetcdf.so.7~), I am
> > not
> > > > sure
> > > > > > if
> > > > > > > it
> > > > > > > > > > > brings
> > > > > > > > > > > > > this problem because I have seen this
message for a
> > > > while.
> > > > > I
> > > > > > > > > compiled
> > > > > > > > > > > > > several codes without any problem. If you
think
> that
> > it
> > > > may
> > > > > > > > affect
> > > > > > > > > > this
> > > > > > > > > > > > > compiling, I can ask it to my department
> > administrator.
> > > > > > > > > > > > >
> > > > > > > > > > > > >
==================================================
> > > > > > > > > > > > > /usr/bin/ld: warning: libnetcdf.so.7, needed
by
> > > > > > > > > > > > > /opt/netCDF/lib/libnetcdf_c++4.so, may
conflict
> with
> > > > > > > > > libnetcdf.so.11
> > > > > > > > > > > > > /usr/bin/ld: /tng4/users/jjung/tool/
> > > > > > BUFRLIB/libbufr.a(ups.o):
> > > > > > > > > > > undefined
> > > > > > > > > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > > > > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so:
error
> adding
> > > > > > symbols:
> > > > > > > > DSO
> > > > > > > > > > > > missing
> > > > > > > > > > > > > from command line
> > > > > > > > > > > > > collect2: error: ld returned 1 exit status
> > > > > > > > > > > > > make[4]: *** [pb2nc] Error 1
> > > > > > > > > > > > > make[4]: Leaving directory
> > > `/tng4/users/jjung/tool/MET/me
> > > > > > > > > > > > > t-6.0_bugfix/src/tools/other/pb2nc'
> > > > > > > > > > > > > make[3]: *** [install-recursive] Error 1
> > > > > > > > > > > > > make[3]: Leaving directory
> > > `/tng4/users/jjung/tool/MET/me
> > > > > > > > > > > > > t-6.0_bugfix/src/tools/other'
> > > > > > > > > > > > > make[2]: *** [install-recursive] Error 1
> > > > > > > > > > > > > make[2]: Leaving directory
> > > `/tng4/users/jjung/tool/MET/me
> > > > > > > > > > > > > t-6.0_bugfix/src/tools'
> > > > > > > > > > > > > make[1]: *** [install-recursive] Error 1
> > > > > > > > > > > > > make[1]: Leaving directory
> > `/tng4/users/jjung/tool/MET/
> > > > > > > > > > > > met-6.0_bugfix/src'
> > > > > > > > > > > > > make: *** [install-recursive] Error 1
> > > > > > > > > > > > > ==============================
> =====================
> > > > > > > > > > > > >
> > > > > > > > > > > > > I attached the log file again. please find
it.
> > > > > > > > > > > > > Thank you for your help.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Best Regards,
> > > > > > > > > > > > > Jia Jung
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > On Mon, Nov 13, 2017 at 10:57 AM, Julie
Prestopnik
> > via
> > > > RT <
> > > > > > > > > > > > > met_help at ucar.edu
> > > > > > > > > > > > > > wrote:
> > > > > > > > > > > > >
> > > > > > > > > > > > > > Hi. I see that you are having trouble
compiling
> > > > METv5.2.
> > > > > > If
> > > > > > > > > > > possible,
> > > > > > > > > > > > > I'd
> > > > > > > > > > > > > > suggest upgrading from METv5.2 to version
6.0.
> Be
> > > > aware
> > > > > > > though
> > > > > > > > > > that
> > > > > > > > > > > > > > version 6.0 is a pretty big change since
we
> > switched
> > > > from
> > > > > > > using
> > > > > > > > > > > NetCDF3
> > > > > > > > > > > > > to
> > > > > > > > > > > > > > NetCDF4. Practically speaking that
requires
> NetCDF4
> > > > built
> > > > > > > upon
> > > > > > > > > > HDF5.
> > > > > > > > > > > > So
> > > > > > > > > > > > > > the MET configuration/compilation process
has
> > changed
> > > > > > > slightly.
> > > > > > > > > We
> > > > > > > > > > > are
> > > > > > > > > > > > > > currently working on version 6.1(to be
released
> at
> > > the
> > > > > end
> > > > > > of
> > > > > > > > > this
> > > > > > > > > > > > month)
> > > > > > > > > > > > > > which will require NetCDF4 as well. So as
long
> as
> > > > you're
> > > > > > > > > > > recompiling,
> > > > > > > > > > > > > I'd
> > > > > > > > > > > > > > recommend using 6.0.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > If you plan to upgrade to 6.0, please
follow the
> > > > > > compilation
> > > > > > > > > > > > instructions
> > > > > > > > > > > > > > in our online tutorial for METv6.0 and let
us
> know
> > if
> > > > you
> > > > > > > > > > experience
> > > > > > > > > > > > any
> > > > > > > > > > > > > > problems or have questions:
> > > > > > > > > > > > > > https://dtcenter.org/met/
> > > > users/support/online_tutorial/
> > > > > > METv6
> > > > > > > > > > > > > > .0/tutorial.php?name=
> compilation&category=req_libs
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > I noticed this warning in your log file,
which
> > could
> > > > also
> > > > > > be
> > > > > > > > > cause
> > > > > > > > > > > for
> > > > > > > > > > > > > > concern:
> > > > > > > > > > > > > > /usr/bin/ld: warning: libnetcdf.so.7,
needed by
> > > > > > > > > > > > > > /usr/lib/gcc/x86_64-redhat-
> > > > > linux/4.8.5/../../../../lib64/
> > > > > > > > > > > > > libnetcdf_c++.so,
> > > > > > > > > > > > > > may conflict with libnetcdf.so.11
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > If you'd like to continue with METv5.2, it
looks
> > like
> > > > > there
> > > > > > > is
> > > > > > > > a
> > > > > > > > > > > > linking
> > > > > > > > > > > > > > problem. However, I'd like to gather some
more
> > > > > > information.
> > > > > > > > > > Please
> > > > > > > > > > > > > verify
> > > > > > > > > > > > > > that you installed BUFRLIB using the
commands
> > listed
> > > on
> > > > > > this
> > > > > > > > page
> > > > > > > > > > for
> > > > > > > > > > > > > > installed BUFRLIB with METv5.2:
> > > > > > > > > > > > > > https://dtcenter.org/met/
> > > > users/support/online_tutorial/
> > > > > > METv5
> > > > > > > > > > > > > > .2/tutorial.php?name=
> compilation&category=req_libs
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Then, please run "make clean", then run
your
> > > > "configure"
> > > > > > > > command
> > > > > > > > > as
> > > > > > > > > > > > > > directed on this page (having set up all
of your
> > > > > > environment
> > > > > > > > > > > variables:
> > > > > > > > > > > > > > https://dtcenter.org/met/
> > > > users/support/online_tutorial/
> > > > > > METv5
> > > > > > > > > > > > > > .2/tutorial.php?name=
> > compilation&category=configure
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Then, please run "make_install' and send
me your
> > > > > config.log
> > > > > > > > file
> > > > > > > > > > and
> > > > > > > > > > > > your
> > > > > > > > > > > > > > make_install.log file.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Thank you.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Julie
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > On Sun, Nov 12, 2017 at 2:30 PM, Jia Jung
via RT
> <
> > > > > > > > > > met_help at ucar.edu>
> > > > > > > > > > > > > > wrote:
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Sun Nov 12 14:30:14 2017: Request 82990
was
> acted
> > > > upon.
> > > > > > > > > > > > > > > Transaction: Ticket created by
> > > helloiamjia at gmail.com
> > > > > > > > > > > > > > > Queue: met_help
> > > > > > > > > > > > > > > Subject: issue while compiling
METv5.2
> > > > > > > > > > > > > > > Owner: Nobody
> > > > > > > > > > > > > > > Requestors: helloiamjia at gmail.com
> > > > > > > > > > > > > > > Status: new
> > > > > > > > > > > > > > > Ticket <URL:
https://rt.rap.ucar.edu/rt/
> > > > > > > > > > > > Ticket/Display.html?id=82990
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Dear,
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Hello, I am Jia Jung and a graduate
student at
> > the
> > > > > > > University
> > > > > > > > > of
> > > > > > > > > > > > > Houston.
> > > > > > > > > > > > > > > I need to use pb2nc tool to deal with
gdas data
> > for
> > > > my
> > > > > > > > > research.
> > > > > > > > > > > So,
> > > > > > > > > > > > I
> > > > > > > > > > > > > > > would like to use MET tools.
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > I downloaded and compiled BUFRLIB_v10-2-
3 by
> > > > following
> > > > > > MET
> > > > > > > > user
> > > > > > > > > > > guild
> > > > > > > > > > > > > pdf
> > > > > > > > > > > > > > > file.
> > > > > > > > > > > > > > > Anyway, I got an undefined reference
error.
> > > > > > > > > > > > > > > ==============================
> > > > =======================
> > > > > > > > > > > > > > > /usr/bin/ld: /tng4/users/jjung/tool/
> > > > > > > > BUFRLIB/libbufr.a(ups.o):
> > > > > > > > > > > > > undefined
> > > > > > > > > > > > > > > reference to symbol '__mth_i_dpowi'
> > > > > > > > > > > > > > > /opt/pgi/linux86-64/17.4/lib/libpgc.so:
error
> > > adding
> > > > > > > > symbols:
> > > > > > > > > > DSO
> > > > > > > > > > > > > > missing
> > > > > > > > > > > > > > > from command line
> > > > > > > > > > > > > > > collect2: error: ld returned 1 exit
status
> > > > > > > > > > > > > > > ==============================
> > > > =======================
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > I also checked libburfr.a file and I
confirmed
> > that
> > > > > there
> > > > > > > > isn't
> > > > > > > > > > > > > > > '__mth_i_dpowi'.
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Can you tell me how to fix it? I
attached my
> log
> > > > file.
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Thank you in advance!
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Best Regards,
> > > > > > > > > > > > > > > Jia Jung
> > > > > > > > > > > > > > > --
> > > > > > > > > > > > > > > Jia Jung
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > > > > > > > > University of Houston
> > > > > > > > > > > > > > > Department of Earth & Atmospheric
Sciences
> > > > > > > > > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu <
> > > > jjung21 at uh.edu
> > > > > >
> > > > > > > > > > > > > > > 346-247-9968
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > --
> > > > > > > > > > > > > Jia Jung
> > > > > > > > > > > > >
> > > > > > > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > > > > > > University of Houston
> > > > > > > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu <
> > jjung21 at uh.edu
> > > >
> > > > > > > > > > > > > 346-247-9968 <(346)%20247-9968>
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > --
> > > > > > > > > > > Jia Jung
> > > > > > > > > > >
> > > > > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > > > > University of Houston
> > > > > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu
<jjung21 at uh.edu
> >
> > > > > > > > > > > 346-247-9968
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > --
> > > > > > > > > Jia Jung
> > > > > > > > >
> > > > > > > > > Atmospheric Science Graduate Student
> > > > > > > > > University of Houston
> > > > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu
<jjung21 at uh.edu>
> > > > > > > > > 346-247-9968
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > --
> > > > > > > Jia Jung
> > > > > > >
> > > > > > > Atmospheric Science Graduate Student
> > > > > > > University of Houston
> > > > > > > Department of Earth & Atmospheric Sciences
> > > > > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > > > > 346-247-9968
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > > > --
> > > > > Jia Jung
> > > > >
> > > > > Atmospheric Science Graduate Student
> > > > > University of Houston
> > > > > Department of Earth & Atmospheric Sciences
> > > > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > > > 346-247-9968
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> > > --
> > > Jia Jung
> > >
> > > Atmospheric Science Graduate Student
> > > University of Houston
> > > Department of Earth & Atmospheric Sciences
> > > helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> > > 346-247-9968
> > >
> > >
> >
> >
>
>
> --
> Jia Jung
>
> Atmospheric Science Graduate Student
> University of Houston
> Department of Earth & Atmospheric Sciences
> helloiamjia at gmail.com / jjung10 at uh.edu <jjung21 at uh.edu>
> 346-247-9968
>
>
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