[Met_help] [rt.rap.ucar.edu #82910] History for Errors when building met
Minna Win via RT
met_help at ucar.edu
Wed Nov 8 14:36:43 MST 2017
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
When trying to build MET, I'm running into errors.
This is a RHEL6 machine.
I have done:
installed the latest versions of netcdf netcdf-devel from rpms.
export MET_NETCDF=/usr
export MET_NETCDFINC=/usr/include
export MET_NETCDFLIB=/usr/lib64
in the directory where I untared the met-6.0_bugfix.20170731.tar.gz
did
./configure --prefix=/usr/local/met
make
I get:
In file included from nc_var_info.cc:24:
nc_utils.h:23: error: ‘netCDF’ is not a namespace-name
nc_utils.h:23: error: expected namespace-name before ‘;’ token
In file included from nc_var_info.cc:24:
nc_utils.h:66: error: ISO C++ forbids declaration of ‘NcAtt’ with no type
nc_utils.h:66: error: expected ‘,’ or ‘...’ before ‘*’ token
This continues for about 2 pages.
Any help would be appreciated.
Steve
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: Errors when building met
From: Minna Win
Time: Tue Nov 07 08:04:43 2017
Hello Steve,
It looks like you are having issues building MET v6.0. Could you
please send us the make_install.log and config.log , which should be
in your top-level MET directory. That will help us in trouble-
shooting your issues.
Regards,
Minna
------------------------------------------------
Subject: Errors when building met
From: Steve Fletcher - NOAA Affiliate
Time: Tue Nov 07 08:16:08 2017
OK.
On Tue, Nov 7, 2017 at 9:04 AM, Minna Win via RT <met_help at ucar.edu>
wrote:
> Hello Steve,
>
> It looks like you are having issues building MET v6.0. Could you
please
> send us the make_install.log and config.log , which should be in
your
> top-level MET directory. That will help us in trouble-shooting your
issues.
>
> Regards,
> Minna
>
------------------------------------------------
Subject: Errors when building met
From: Minna Win
Time: Tue Nov 07 13:55:29 2017
Hi Steve,
Upon close inspection of your make.log, it looks like you don't have
HDF5
installed, this is needed for supporting NetCDF4. HDF5 needs to be
built
prior to building NetCDF4. You can follow these instructions to
install
what's necessary for HDF5 and NetCDF4:
---------------------------------------------------------------------snip-----------------------------------------
Set the following environment variables:
export iprefix=/usrx/local/dev/met/met-6.0/external_libs
export libdir=/usrx/local/dev/met/met-6.0/external_libs/lib
export incdir=/usrx/local/dev/met/met-6.0/external_libs/include
and then do the following:
Download the zlib package:
http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-1.2.6.tar
Unpack the package (tar -xvf)
cd zlib-1.2.6
./configure --prefix=$iprefix/ --enable-shared
make; make install
Download the HDF5 package:
https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-
1.8.18/src/hdf5
-1.8.18.tar.gz
Unpack the package (tar -xvf)
./configure --prefix=$iprefix --with-zlib=$libdir LDFLAGS=-L$libdir
CPPFLAGS
=-I$incdir
make
make check
make install
Download the NetCDF C package:
ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.zip
Unpack the package (unzip)
cd netcdf-4.4.1.1
export FC=''
export F90=''
./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-I$incdir
make; make install
Download the NetCDF CXX package:
https://www.gfd-dennou.org/arch/netcdf/unidata-mirror/netcdf
-cxx4-4.3.0.tar.gz
Unpack the package (tar -zxf)
cd netcdf-cxx4-4.3.0
./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-I$incdir
make; make install
-----------------------------------------------------------------snip--------------------------------------------------
Please let us know if you experience any problems.
Regards,
Minna
---------------
Minna Win
NCAR
Research Applications Lab
Phone: 303-497-8423
Fax: 302-497-8401
On Tue, Nov 7, 2017 at 3:16 PM, Steve Fletcher - NOAA Affiliate via RT
<
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82910 >
>
> OK.
>
> On Tue, Nov 7, 2017 at 9:04 AM, Minna Win via RT <met_help at ucar.edu>
> wrote:
>
> > Hello Steve,
> >
> > It looks like you are having issues building MET v6.0. Could you
please
> > send us the make_install.log and config.log , which should be in
your
> > top-level MET directory. That will help us in trouble-shooting
your
> issues.
> >
> > Regards,
> > Minna
> >
>
>
------------------------------------------------
Subject: Errors when building met
From: Steve Fletcher - NOAA Affiliate
Time: Tue Nov 07 14:36:46 2017
It did install hdf5 as a dependency when I installed the netcdf rpm. I
also
tried building met using the hdf/netcdf that I had compiled from
source and
got the same error message.
rpm -qa shows
hdf5-devel-1.8.5.patch1-10.el6.x86_64
hdf5-1.8.5.patch1-10.el6.x86_64
On Tue, Nov 7, 2017 at 2:55 PM, Minna Win via RT <met_help at ucar.edu>
wrote:
> Hi Steve,
>
> Upon close inspection of your make.log, it looks like you don't have
HDF5
> installed, this is needed for supporting NetCDF4. HDF5 needs to be
built
> prior to building NetCDF4. You can follow these instructions to
install
> what's necessary for HDF5 and NetCDF4:
>
> ------------------------------------------------------------
> ---------snip-----------------------------------------
> Set the following environment variables:
>
> export iprefix=/usrx/local/dev/met/met-6.0/external_libs
> export libdir=/usrx/local/dev/met/met-6.0/external_libs/lib
> export incdir=/usrx/local/dev/met/met-6.0/external_libs/include
>
>
> and then do the following:
>
> Download the zlib package:
> http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-1.2.6.tar
> Unpack the package (tar -xvf)
> cd zlib-1.2.6
> ./configure --prefix=$iprefix/ --enable-shared
> make; make install
>
> Download the HDF5 package:
> https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/
> hdf5-1.8.18/src/hdf5
> -1.8.18.tar.gz
> Unpack the package (tar -xvf)
> ./configure --prefix=$iprefix --with-zlib=$libdir LDFLAGS=-L$libdir
> CPPFLAGS
> =-I$incdir
> make
> make check
> make install
>
> Download the NetCDF C package:
> ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.zip
> Unpack the package (unzip)
> cd netcdf-4.4.1.1
> export FC=''
> export F90=''
> ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-I$incdir
> make; make install
>
> Download the NetCDF CXX package:
> https://www.gfd-dennou.org/arch/netcdf/unidata-mirror/netcdf
> -cxx4-4.3.0.tar.gz
> Unpack the package (tar -zxf)
> cd netcdf-cxx4-4.3.0
> ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-I$incdir
> make; make install
>
> ------------------------------------------------------------
> -----snip--------------------------------------------------
>
>
> Please let us know if you experience any problems.
>
> Regards,
> Minna
>
>
> ---------------
> Minna Win
> NCAR
> Research Applications Lab
> Phone: 303-497-8423
> Fax: 302-497-8401
>
>
> On Tue, Nov 7, 2017 at 3:16 PM, Steve Fletcher - NOAA Affiliate via
RT <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82910 >
> >
> > OK.
> >
> > On Tue, Nov 7, 2017 at 9:04 AM, Minna Win via RT
<met_help at ucar.edu>
> > wrote:
> >
> > > Hello Steve,
> > >
> > > It looks like you are having issues building MET v6.0. Could
you
> please
> > > send us the make_install.log and config.log , which should be in
your
> > > top-level MET directory. That will help us in trouble-shooting
your
> > issues.
> > >
> > > Regards,
> > > Minna
> > >
> >
> >
>
>
------------------------------------------------
Subject: Errors when building met
From: Minna Win
Time: Tue Nov 07 15:23:07 2017
Hi Steve,
Could you please do a 'make clean' then re-run your configure command
and
redirect it to a log file called met_configure.log, then run 'make
install
>& make_install.log&' and send the met_configure.log and
make_install.log?
Thanks,
Minna
---------------
Minna Win
NCAR
Research Applications Lab
Phone: 303-497-8423
Fax: 302-497-8401
On Tue, Nov 7, 2017 at 9:36 PM, Steve Fletcher - NOAA Affiliate via RT
<
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82910 >
>
> It did install hdf5 as a dependency when I installed the netcdf rpm.
I also
> tried building met using the hdf/netcdf that I had compiled from
source and
> got the same error message.
> rpm -qa shows
> hdf5-devel-1.8.5.patch1-10.el6.x86_64
> hdf5-1.8.5.patch1-10.el6.x86_64
>
> On Tue, Nov 7, 2017 at 2:55 PM, Minna Win via RT <met_help at ucar.edu>
> wrote:
>
> > Hi Steve,
> >
> > Upon close inspection of your make.log, it looks like you don't
have HDF5
> > installed, this is needed for supporting NetCDF4. HDF5 needs to be
built
> > prior to building NetCDF4. You can follow these instructions to
install
> > what's necessary for HDF5 and NetCDF4:
> >
> > ------------------------------------------------------------
> > ---------snip-----------------------------------------
> > Set the following environment variables:
> >
> > export iprefix=/usrx/local/dev/met/met-6.0/external_libs
> > export libdir=/usrx/local/dev/met/met-6.0/external_libs/lib
> > export incdir=/usrx/local/dev/met/met-6.0/external_libs/include
> >
> >
> > and then do the following:
> >
> > Download the zlib package:
> > http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-1.2.6.tar
> > Unpack the package (tar -xvf)
> > cd zlib-1.2.6
> > ./configure --prefix=$iprefix/ --enable-shared
> > make; make install
> >
> > Download the HDF5 package:
> > https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/
> > hdf5-1.8.18/src/hdf5
> > -1.8.18.tar.gz
> > Unpack the package (tar -xvf)
> > ./configure --prefix=$iprefix --with-zlib=$libdir LDFLAGS=-
L$libdir
> > CPPFLAGS
> > =-I$incdir
> > make
> > make check
> > make install
> >
> > Download the NetCDF C package:
> > ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.zip
> > Unpack the package (unzip)
> > cd netcdf-4.4.1.1
> > export FC=''
> > export F90=''
> > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-I$incdir
> > make; make install
> >
> > Download the NetCDF CXX package:
> > https://www.gfd-dennou.org/arch/netcdf/unidata-mirror/netcdf
> > -cxx4-4.3.0.tar.gz
> > Unpack the package (tar -zxf)
> > cd netcdf-cxx4-4.3.0
> > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-I$incdir
> > make; make install
> >
> > ------------------------------------------------------------
> > -----snip--------------------------------------------------
> >
> >
> > Please let us know if you experience any problems.
> >
> > Regards,
> > Minna
> >
> >
> > ---------------
> > Minna Win
> > NCAR
> > Research Applications Lab
> > Phone: 303-497-8423
> > Fax: 302-497-8401
> >
> >
> > On Tue, Nov 7, 2017 at 3:16 PM, Steve Fletcher - NOAA Affiliate
via RT <
> > met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82910 >
> > >
> > > OK.
> > >
> > > On Tue, Nov 7, 2017 at 9:04 AM, Minna Win via RT
<met_help at ucar.edu>
> > > wrote:
> > >
> > > > Hello Steve,
> > > >
> > > > It looks like you are having issues building MET v6.0. Could
you
> > please
> > > > send us the make_install.log and config.log , which should be
in your
> > > > top-level MET directory. That will help us in trouble-
shooting your
> > > issues.
> > > >
> > > > Regards,
> > > > Minna
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: Errors when building met
From: Steve Fletcher - NOAA Affiliate
Time: Wed Nov 08 06:19:22 2017
OK. did make distclean and make clean.
added my command history to see if I am doing something stupid.
On Tue, Nov 7, 2017 at 4:23 PM, Minna Win via RT <met_help at ucar.edu>
wrote:
> Hi Steve,
>
> Could you please do a 'make clean' then re-run your configure
command and
> redirect it to a log file called met_configure.log, then run 'make
install
> >& make_install.log&' and send the met_configure.log and
make_install.log?
>
> Thanks,
> Minna
>
> ---------------
> Minna Win
> NCAR
> Research Applications Lab
> Phone: 303-497-8423
> Fax: 302-497-8401
>
>
> On Tue, Nov 7, 2017 at 9:36 PM, Steve Fletcher - NOAA Affiliate via
RT <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82910 >
> >
> > It did install hdf5 as a dependency when I installed the netcdf
rpm. I
> also
> > tried building met using the hdf/netcdf that I had compiled from
source
> and
> > got the same error message.
> > rpm -qa shows
> > hdf5-devel-1.8.5.patch1-10.el6.x86_64
> > hdf5-1.8.5.patch1-10.el6.x86_64
> >
> > On Tue, Nov 7, 2017 at 2:55 PM, Minna Win via RT
<met_help at ucar.edu>
> > wrote:
> >
> > > Hi Steve,
> > >
> > > Upon close inspection of your make.log, it looks like you don't
have
> HDF5
> > > installed, this is needed for supporting NetCDF4. HDF5 needs to
be
> built
> > > prior to building NetCDF4. You can follow these instructions to
> install
> > > what's necessary for HDF5 and NetCDF4:
> > >
> > > ------------------------------------------------------------
> > > ---------snip-----------------------------------------
> > > Set the following environment variables:
> > >
> > > export iprefix=/usrx/local/dev/met/met-6.0/external_libs
> > > export libdir=/usrx/local/dev/met/met-6.0/external_libs/lib
> > > export incdir=/usrx/local/dev/met/met-6.0/external_libs/include
> > >
> > >
> > > and then do the following:
> > >
> > > Download the zlib package:
> > > http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-1.2.6.tar
> > > Unpack the package (tar -xvf)
> > > cd zlib-1.2.6
> > > ./configure --prefix=$iprefix/ --enable-shared
> > > make; make install
> > >
> > > Download the HDF5 package:
> > > https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/
> > > hdf5-1.8.18/src/hdf5
> > > -1.8.18.tar.gz
> > > Unpack the package (tar -xvf)
> > > ./configure --prefix=$iprefix --with-zlib=$libdir LDFLAGS=-
L$libdir
> > > CPPFLAGS
> > > =-I$incdir
> > > make
> > > make check
> > > make install
> > >
> > > Download the NetCDF C package:
> > > ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.zip
> > > Unpack the package (unzip)
> > > cd netcdf-4.4.1.1
> > > export FC=''
> > > export F90=''
> > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-
I$incdir
> > > make; make install
> > >
> > > Download the NetCDF CXX package:
> > > https://www.gfd-dennou.org/arch/netcdf/unidata-mirror/netcdf
> > > -cxx4-4.3.0.tar.gz
> > > Unpack the package (tar -zxf)
> > > cd netcdf-cxx4-4.3.0
> > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-
I$incdir
> > > make; make install
> > >
> > > ------------------------------------------------------------
> > > -----snip--------------------------------------------------
> > >
> > >
> > > Please let us know if you experience any problems.
> > >
> > > Regards,
> > > Minna
> > >
> > >
> > > ---------------
> > > Minna Win
> > > NCAR
> > > Research Applications Lab
> > > Phone: 303-497-8423
> > > Fax: 302-497-8401
> > >
> > >
> > > On Tue, Nov 7, 2017 at 3:16 PM, Steve Fletcher - NOAA Affiliate
via RT
> <
> > > met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82910
>
> > > >
> > > > OK.
> > > >
> > > > On Tue, Nov 7, 2017 at 9:04 AM, Minna Win via RT
<met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > > Hello Steve,
> > > > >
> > > > > It looks like you are having issues building MET v6.0.
Could you
> > > please
> > > > > send us the make_install.log and config.log , which should
be in
> your
> > > > > top-level MET directory. That will help us in trouble-
shooting
> your
> > > > issues.
> > > > >
> > > > > Regards,
> > > > > Minna
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>
------------------------------------------------
Subject: Errors when building met
From: Minna Win
Time: Wed Nov 08 10:07:56 2017
Thanks Steve,
Doing a fresh clean revealed the message:
"In file included from nc_var_info.cc:24:
nc_utils.h:22:18: error: netcdf: No such file or directory"
which indicates that NetCDF isn't installed or parts of the NetCDF
installation are missing. Additionally, it looks like the Fortran
NetCDF library isn't linking, based on the absence of
-L${MET_NETCDF}/lib in your met_configure.log you sent.
Could you please check for the following files to make sure the
installation was correct:
--------------------------------------------------------------
Checklist for NetCDF4 C++ installation Files for NetCDF4 C:
$MET_NETCDF/include/netcdf.h
$MET_NETCDF/lib/libnetcdf.a
$MET_NETCDF/lib/libnetcdf.so
Files for NetCDF4 C++ (MET-6.0):
$MET_NETCDF/include/netcdf
$MET_NETCDF/lib/libnetcdf_c++4.a
$MET_NETCDF/lib/libnetcdf_c++4.so
--------------------------------------------------------------
If these files are missing then you will need to install any missing
libraries (instructions in an earlier email).
Regards,
Minna
On Wed Nov 08 06:19:22 2017, steve.fletcher at noaa.gov wrote:
> OK. did make distclean and make clean.
> added my command history to see if I am doing something stupid.
>
>
> On Tue, Nov 7, 2017 at 4:23 PM, Minna Win via RT <met_help at ucar.edu>
wrote:
>
> > Hi Steve,
> >
> > Could you please do a 'make clean' then re-run your configure
command and
> > redirect it to a log file called met_configure.log, then run 'make
install
> > >& make_install.log&' and send the met_configure.log and
make_install.log?
> >
> > Thanks,
> > Minna
> >
> > ---------------
> > Minna Win
> > NCAR
> > Research Applications Lab
> > Phone: 303-497-8423
> > Fax: 302-497-8401
> >
> >
> > On Tue, Nov 7, 2017 at 9:36 PM, Steve Fletcher - NOAA Affiliate
via RT <
> > met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82910 >
> > >
> > > It did install hdf5 as a dependency when I installed the netcdf
rpm. I
> > also
> > > tried building met using the hdf/netcdf that I had compiled from
source
> > and
> > > got the same error message.
> > > rpm -qa shows
> > > hdf5-devel-1.8.5.patch1-10.el6.x86_64
> > > hdf5-1.8.5.patch1-10.el6.x86_64
> > >
> > > On Tue, Nov 7, 2017 at 2:55 PM, Minna Win via RT
<met_help at ucar.edu>
> > > wrote:
> > >
> > > > Hi Steve,
> > > >
> > > > Upon close inspection of your make.log, it looks like you
don't have
> > HDF5
> > > > installed, this is needed for supporting NetCDF4. HDF5 needs
to be
> > built
> > > > prior to building NetCDF4. You can follow these instructions
to
> > install
> > > > what's necessary for HDF5 and NetCDF4:
> > > >
> > > > ------------------------------------------------------------
> > > > ---------snip-----------------------------------------
> > > > Set the following environment variables:
> > > >
> > > > export iprefix=/usrx/local/dev/met/met-6.0/external_libs
> > > > export libdir=/usrx/local/dev/met/met-6.0/external_libs/lib
> > > > export incdir=/usrx/local/dev/met/met-
6.0/external_libs/include
> > > >
> > > >
> > > > and then do the following:
> > > >
> > > > Download the zlib package:
> > > > http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-1.2.6.tar
> > > > Unpack the package (tar -xvf)
> > > > cd zlib-1.2.6
> > > > ./configure --prefix=$iprefix/ --enable-shared
> > > > make; make install
> > > >
> > > > Download the HDF5 package:
> > > > https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/
> > > > hdf5-1.8.18/src/hdf5
> > > > -1.8.18.tar.gz
> > > > Unpack the package (tar -xvf)
> > > > ./configure --prefix=$iprefix --with-zlib=$libdir LDFLAGS=-
L$libdir
> > > > CPPFLAGS
> > > > =-I$incdir
> > > > make
> > > > make check
> > > > make install
> > > >
> > > > Download the NetCDF C package:
> > > > ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.zip
> > > > Unpack the package (unzip)
> > > > cd netcdf-4.4.1.1
> > > > export FC=''
> > > > export F90=''
> > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-
I$incdir
> > > > make; make install
> > > >
> > > > Download the NetCDF CXX package:
> > > > https://www.gfd-dennou.org/arch/netcdf/unidata-mirror/netcdf
> > > > -cxx4-4.3.0.tar.gz
> > > > Unpack the package (tar -zxf)
> > > > cd netcdf-cxx4-4.3.0
> > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-
I$incdir
> > > > make; make install
> > > >
> > > > ------------------------------------------------------------
> > > > -----snip--------------------------------------------------
> > > >
> > > >
> > > > Please let us know if you experience any problems.
> > > >
> > > > Regards,
> > > > Minna
> > > >
> > > >
> > > > ---------------
> > > > Minna Win
> > > > NCAR
> > > > Research Applications Lab
> > > > Phone: 303-497-8423
> > > > Fax: 302-497-8401
> > > >
> > > >
> > > > On Tue, Nov 7, 2017 at 3:16 PM, Steve Fletcher - NOAA
Affiliate via RT
> > <
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82910 >
> > > > >
> > > > > OK.
> > > > >
> > > > > On Tue, Nov 7, 2017 at 9:04 AM, Minna Win via RT
<met_help at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > > Hello Steve,
> > > > > >
> > > > > > It looks like you are having issues building MET v6.0.
Could you
> > > > please
> > > > > > send us the make_install.log and config.log , which should
be in
> > your
> > > > > > top-level MET directory. That will help us in trouble-
shooting
> > your
> > > > > issues.
> > > > > >
> > > > > > Regards,
> > > > > > Minna
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
------------------------------------------------
Subject: Errors when building met
From: Steve Fletcher - NOAA Affiliate
Time: Wed Nov 08 14:14:56 2017
OK. The rpm version of netcdf was indeed missing the static libraries.
The
locally compiled version was missing the /include/netcdf file.
Got the current versions of netcdf, netcdf_c++, netcdf_fortran, and
hdf
and compiled them and it was happy.
Thanks for your help!!!
Steve
On Wed, Nov 8, 2017 at 11:07 AM, Minna Win via RT <met_help at ucar.edu>
wrote:
> Thanks Steve,
>
> Doing a fresh clean revealed the message:
> "In file included from nc_var_info.cc:24:
> nc_utils.h:22:18: error: netcdf: No such file or directory"
>
> which indicates that NetCDF isn't installed or parts of the NetCDF
> installation are missing. Additionally, it looks like the Fortran
NetCDF
> library isn't linking, based on the absence of -L${MET_NETCDF}/lib
in your
> met_configure.log you sent.
>
> Could you please check for the following files to make sure the
> installation was correct:
>
> --------------------------------------------------------------
> Checklist for NetCDF4 C++ installation Files for NetCDF4 C:
>
> $MET_NETCDF/include/netcdf.h
> $MET_NETCDF/lib/libnetcdf.a
> $MET_NETCDF/lib/libnetcdf.so
>
> Files for NetCDF4 C++ (MET-6.0):
>
> $MET_NETCDF/include/netcdf
> $MET_NETCDF/lib/libnetcdf_c++4.a
> $MET_NETCDF/lib/libnetcdf_c++4.so
> --------------------------------------------------------------
>
> If these files are missing then you will need to install any missing
> libraries (instructions in an earlier email).
>
> Regards,
> Minna
>
> On Wed Nov 08 06:19:22 2017, steve.fletcher at noaa.gov wrote:
> > OK. did make distclean and make clean.
> > added my command history to see if I am doing something stupid.
> >
> >
> > On Tue, Nov 7, 2017 at 4:23 PM, Minna Win via RT
<met_help at ucar.edu>
> wrote:
> >
> > > Hi Steve,
> > >
> > > Could you please do a 'make clean' then re-run your configure
command
> and
> > > redirect it to a log file called met_configure.log, then run
'make
> install
> > > >& make_install.log&' and send the met_configure.log and
> make_install.log?
> > >
> > > Thanks,
> > > Minna
> > >
> > > ---------------
> > > Minna Win
> > > NCAR
> > > Research Applications Lab
> > > Phone: 303-497-8423
> > > Fax: 302-497-8401
> > >
> > >
> > > On Tue, Nov 7, 2017 at 9:36 PM, Steve Fletcher - NOAA Affiliate
via RT
> <
> > > met_help at ucar.edu> wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82910
>
> > > >
> > > > It did install hdf5 as a dependency when I installed the
netcdf rpm.
> I
> > > also
> > > > tried building met using the hdf/netcdf that I had compiled
from
> source
> > > and
> > > > got the same error message.
> > > > rpm -qa shows
> > > > hdf5-devel-1.8.5.patch1-10.el6.x86_64
> > > > hdf5-1.8.5.patch1-10.el6.x86_64
> > > >
> > > > On Tue, Nov 7, 2017 at 2:55 PM, Minna Win via RT
<met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > > Hi Steve,
> > > > >
> > > > > Upon close inspection of your make.log, it looks like you
don't
> have
> > > HDF5
> > > > > installed, this is needed for supporting NetCDF4. HDF5 needs
to be
> > > built
> > > > > prior to building NetCDF4. You can follow these
instructions to
> > > install
> > > > > what's necessary for HDF5 and NetCDF4:
> > > > >
> > > > > ------------------------------------------------------------
> > > > > ---------snip-----------------------------------------
> > > > > Set the following environment variables:
> > > > >
> > > > > export iprefix=/usrx/local/dev/met/met-6.0/external_libs
> > > > > export libdir=/usrx/local/dev/met/met-6.0/external_libs/lib
> > > > > export incdir=/usrx/local/dev/met/met-
6.0/external_libs/include
> > > > >
> > > > >
> > > > > and then do the following:
> > > > >
> > > > > Download the zlib package:
> > > > > http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-1.2.6.tar
> > > > > Unpack the package (tar -xvf)
> > > > > cd zlib-1.2.6
> > > > > ./configure --prefix=$iprefix/ --enable-shared
> > > > > make; make install
> > > > >
> > > > > Download the HDF5 package:
> > > > > https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/
> > > > > hdf5-1.8.18/src/hdf5
> > > > > -1.8.18.tar.gz
> > > > > Unpack the package (tar -xvf)
> > > > > ./configure --prefix=$iprefix --with-zlib=$libdir LDFLAGS=-
L$libdir
> > > > > CPPFLAGS
> > > > > =-I$incdir
> > > > > make
> > > > > make check
> > > > > make install
> > > > >
> > > > > Download the NetCDF C package:
> > > > > ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.zip
> > > > > Unpack the package (unzip)
> > > > > cd netcdf-4.4.1.1
> > > > > export FC=''
> > > > > export F90=''
> > > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-
I$incdir
> > > > > make; make install
> > > > >
> > > > > Download the NetCDF CXX package:
> > > > > https://www.gfd-dennou.org/arch/netcdf/unidata-mirror/netcdf
> > > > > -cxx4-4.3.0.tar.gz
> > > > > Unpack the package (tar -zxf)
> > > > > cd netcdf-cxx4-4.3.0
> > > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-
I$incdir
> > > > > make; make install
> > > > >
> > > > > ------------------------------------------------------------
> > > > > -----snip--------------------------------------------------
> > > > >
> > > > >
> > > > > Please let us know if you experience any problems.
> > > > >
> > > > > Regards,
> > > > > Minna
> > > > >
> > > > >
> > > > > ---------------
> > > > > Minna Win
> > > > > NCAR
> > > > > Research Applications Lab
> > > > > Phone: 303-497-8423
> > > > > Fax: 302-497-8401
> > > > >
> > > > >
> > > > > On Tue, Nov 7, 2017 at 3:16 PM, Steve Fletcher - NOAA
Affiliate
> via RT
> > > <
> > > > > met_help at ucar.edu> wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82910 >
> > > > > >
> > > > > > OK.
> > > > > >
> > > > > > On Tue, Nov 7, 2017 at 9:04 AM, Minna Win via RT <
> met_help at ucar.edu>
> > > > > > wrote:
> > > > > >
> > > > > > > Hello Steve,
> > > > > > >
> > > > > > > It looks like you are having issues building MET v6.0.
Could
> you
> > > > > please
> > > > > > > send us the make_install.log and config.log , which
should be
> in
> > > your
> > > > > > > top-level MET directory. That will help us in trouble-
shooting
> > > your
> > > > > > issues.
> > > > > > >
> > > > > > > Regards,
> > > > > > > Minna
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
>
>
>
>
------------------------------------------------
Subject: Errors when building met
From: Minna Win
Time: Wed Nov 08 14:36:41 2017
Hi Steve,
I'm glad that finally worked for you. I'm closing this ticket. If
you
have any further issues or questions, please don't hesitate to open a
MET
Help ticket.
Regards,
Minna
---------------
Minna Win
NCAR
Research Applications Lab
Phone: 303-497-8423
Fax: 302-497-8401
On Wed, Nov 8, 2017 at 9:14 PM, Steve Fletcher - NOAA Affiliate via RT
<
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82910 >
>
> OK. The rpm version of netcdf was indeed missing the static
libraries. The
> locally compiled version was missing the /include/netcdf file.
> Got the current versions of netcdf, netcdf_c++, netcdf_fortran, and
hdf
> and compiled them and it was happy.
>
> Thanks for your help!!!
>
> Steve
>
>
> On Wed, Nov 8, 2017 at 11:07 AM, Minna Win via RT
<met_help at ucar.edu>
> wrote:
>
> > Thanks Steve,
> >
> > Doing a fresh clean revealed the message:
> > "In file included from nc_var_info.cc:24:
> > nc_utils.h:22:18: error: netcdf: No such file or directory"
> >
> > which indicates that NetCDF isn't installed or parts of the NetCDF
> > installation are missing. Additionally, it looks like the Fortran
NetCDF
> > library isn't linking, based on the absence of
-L${MET_NETCDF}/lib in
> your
> > met_configure.log you sent.
> >
> > Could you please check for the following files to make sure the
> > installation was correct:
> >
> > --------------------------------------------------------------
> > Checklist for NetCDF4 C++ installation Files for NetCDF4 C:
> >
> > $MET_NETCDF/include/netcdf.h
> > $MET_NETCDF/lib/libnetcdf.a
> > $MET_NETCDF/lib/libnetcdf.so
> >
> > Files for NetCDF4 C++ (MET-6.0):
> >
> > $MET_NETCDF/include/netcdf
> > $MET_NETCDF/lib/libnetcdf_c++4.a
> > $MET_NETCDF/lib/libnetcdf_c++4.so
> > --------------------------------------------------------------
> >
> > If these files are missing then you will need to install any
missing
> > libraries (instructions in an earlier email).
> >
> > Regards,
> > Minna
> >
> > On Wed Nov 08 06:19:22 2017, steve.fletcher at noaa.gov wrote:
> > > OK. did make distclean and make clean.
> > > added my command history to see if I am doing something stupid.
> > >
> > >
> > > On Tue, Nov 7, 2017 at 4:23 PM, Minna Win via RT
<met_help at ucar.edu>
> > wrote:
> > >
> > > > Hi Steve,
> > > >
> > > > Could you please do a 'make clean' then re-run your configure
command
> > and
> > > > redirect it to a log file called met_configure.log, then run
'make
> > install
> > > > >& make_install.log&' and send the met_configure.log and
> > make_install.log?
> > > >
> > > > Thanks,
> > > > Minna
> > > >
> > > > ---------------
> > > > Minna Win
> > > > NCAR
> > > > Research Applications Lab
> > > > Phone: 303-497-8423
> > > > Fax: 302-497-8401
> > > >
> > > >
> > > > On Tue, Nov 7, 2017 at 9:36 PM, Steve Fletcher - NOAA
Affiliate via
> RT
> > <
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82910 >
> > > > >
> > > > > It did install hdf5 as a dependency when I installed the
netcdf
> rpm.
> > I
> > > > also
> > > > > tried building met using the hdf/netcdf that I had compiled
from
> > source
> > > > and
> > > > > got the same error message.
> > > > > rpm -qa shows
> > > > > hdf5-devel-1.8.5.patch1-10.el6.x86_64
> > > > > hdf5-1.8.5.patch1-10.el6.x86_64
> > > > >
> > > > > On Tue, Nov 7, 2017 at 2:55 PM, Minna Win via RT <
> met_help at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > > Hi Steve,
> > > > > >
> > > > > > Upon close inspection of your make.log, it looks like you
don't
> > have
> > > > HDF5
> > > > > > installed, this is needed for supporting NetCDF4. HDF5
needs to
> be
> > > > built
> > > > > > prior to building NetCDF4. You can follow these
instructions to
> > > > install
> > > > > > what's necessary for HDF5 and NetCDF4:
> > > > > >
> > > > > >
------------------------------------------------------------
> > > > > > ---------snip-----------------------------------------
> > > > > > Set the following environment variables:
> > > > > >
> > > > > > export iprefix=/usrx/local/dev/met/met-6.0/external_libs
> > > > > > export libdir=/usrx/local/dev/met/met-
6.0/external_libs/lib
> > > > > > export incdir=/usrx/local/dev/met/met-
6.0/external_libs/include
> > > > > >
> > > > > >
> > > > > > and then do the following:
> > > > > >
> > > > > > Download the zlib package:
> > > > > > http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-
1.2.6.tar
> > > > > > Unpack the package (tar -xvf)
> > > > > > cd zlib-1.2.6
> > > > > > ./configure --prefix=$iprefix/ --enable-shared
> > > > > > make; make install
> > > > > >
> > > > > > Download the HDF5 package:
> > > > > > https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/
> > > > > > hdf5-1.8.18/src/hdf5
> > > > > > -1.8.18.tar.gz
> > > > > > Unpack the package (tar -xvf)
> > > > > > ./configure --prefix=$iprefix --with-zlib=$libdir
> LDFLAGS=-L$libdir
> > > > > > CPPFLAGS
> > > > > > =-I$incdir
> > > > > > make
> > > > > > make check
> > > > > > make install
> > > > > >
> > > > > > Download the NetCDF C package:
> > > > > > ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.zip
> > > > > > Unpack the package (unzip)
> > > > > > cd netcdf-4.4.1.1
> > > > > > export FC=''
> > > > > > export F90=''
> > > > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir
> CPPFLAGS=-I$incdir
> > > > > > make; make install
> > > > > >
> > > > > > Download the NetCDF CXX package:
> > > > > > https://www.gfd-dennou.org/arch/netcdf/unidata-
mirror/netcdf
> > > > > > -cxx4-4.3.0.tar.gz
> > > > > > Unpack the package (tar -zxf)
> > > > > > cd netcdf-cxx4-4.3.0
> > > > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir
> CPPFLAGS=-I$incdir
> > > > > > make; make install
> > > > > >
> > > > > >
------------------------------------------------------------
> > > > > >
-----snip--------------------------------------------------
> > > > > >
> > > > > >
> > > > > > Please let us know if you experience any problems.
> > > > > >
> > > > > > Regards,
> > > > > > Minna
> > > > > >
> > > > > >
> > > > > > ---------------
> > > > > > Minna Win
> > > > > > NCAR
> > > > > > Research Applications Lab
> > > > > > Phone: 303-497-8423
> > > > > > Fax: 302-497-8401
> > > > > >
> > > > > >
> > > > > > On Tue, Nov 7, 2017 at 3:16 PM, Steve Fletcher - NOAA
Affiliate
> > via RT
> > > > <
> > > > > > met_help at ucar.edu> wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=82910
> >
> > > > > > >
> > > > > > > OK.
> > > > > > >
> > > > > > > On Tue, Nov 7, 2017 at 9:04 AM, Minna Win via RT <
> > met_help at ucar.edu>
> > > > > > > wrote:
> > > > > > >
> > > > > > > > Hello Steve,
> > > > > > > >
> > > > > > > > It looks like you are having issues building MET v6.0.
Could
> > you
> > > > > > please
> > > > > > > > send us the make_install.log and config.log , which
should be
> > in
> > > > your
> > > > > > > > top-level MET directory. That will help us in
> trouble-shooting
> > > > your
> > > > > > > issues.
> > > > > > > >
> > > > > > > > Regards,
> > > > > > > > Minna
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> >
> >
> >
> >
>
>
------------------------------------------------
Subject: Errors when building met
From: Minna Win
Time: Wed Nov 08 14:36:43 2017
Resolving ticket.
------------------------------------------------
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