[Met_help] [rt.rap.ucar.edu #79962] History for compilation error
Julie Prestopnik via RT
met_help at ucar.edu
Mon May 8 10:20:24 MDT 2017
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Hi MET help desk...
My name is Elelwani Phaduli from South African Weather Service, I have been using MET verification tool for the last three years. Currently I want to install the software on the CRARY computer. After installing all the dependencies, when I run the make install I get the following error.
g++: numpbmsg.o: No such file or directory
g++: openpb.o: No such file or directory
g++: closepb.o: No such file or directory
g++: readpb.o: No such file or directory
g++: dumppb.o: No such file or directory
make[4]: *** [pb2nc] Error 1
make[4]: Leaving directory `/scratch/elelwani/met-5.2/src/tools/other/pb2nc'
make[3]: *** [install-recursive] Error 1
make[3]: Leaving directory `/scratch/elelwani/met-5.2/src/tools/other'
make[2]: *** [install-recursive] Error 1
make[2]: Leaving directory `/scratch/elelwani/met-5.2/src/tools'
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory `/scratch/elelwani/met-5.2/src'
make: *** [install-recursive] Error 1
Other executables, such as mode, asscii2nc, gridstat are created but they cannot work. When I try to use them I get an error (i.e. bin/mode: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory).
I will be very grateful if you assist in solving this problem.
Thank you..
Elelwani Phaduli
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: compilation error
From: Julie Prestopnik
Time: Fri Mar 24 10:38:12 2017
Hi.
I am sorry to hear that you are having problems compiling MET.
Thank you for letting me know about the error:
"bin/mode: error while loading shared libraries: libgsl.so.0: cannot
open
shared object file: No such file or directory"
When you compiled MET, you likely did so using dynamic linking as
opposed
to static linking. Dynamic linking means that rather than checking
for
required libraries at compile time, the tools should check for them at
run
time. When you run the mode tool, it is looking for the GSL shared
object
library file named libgsl.so.0, as well as a bunch of other shared
object
files. It's erroring out telling you that it can't find the GSL
shared
object library file.
Hopefully, you can just set the LD_LIBRARY_PATH environment variable
to
tell the tool where to look. The tools will, by default, look in
common
areas like /usr/lib, /usr/local/lib and perhaps some others.
Please try including the path to libgsl.so.0 in your LD_LIBRARY_PATH,
and
hopefully, that will make that error go away.
If that doesn't solve all of the problems you are experiencing, could
you
please tell me what version you are installing?
Could you also please capture the output from configure, using
something
like:
*./configure --prefix=`pwd` --enable-grib2 --enable-modis
--enable-mode_graphics >& met_configure.log*
and send me an email attachment of met_configure.log?
Could you also please capture the output from "make install" and "make
test" if "make install" is successful, using something like:
*make install >& make_install.log &*
*make test >& make_test.log &*
and send me an email attachments of make_install.log and
make_test.log?
That may help me better determine what is going on.
Thank you!
Julie
On Fri, Mar 24, 2017 at 2:01 AM, Elelwani Phaduli via RT
<met_help at ucar.edu>
wrote:
>
> Fri Mar 24 02:01:11 2017: Request 79962 was acted upon.
> Transaction: Ticket created by Elelwani.Phaduli at weathersa.co.za
> Queue: met_help
> Subject: compilation error
> Owner: Nobody
> Requestors: Elelwani.Phaduli at weathersa.co.za
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=79962 >
>
>
>
>
> Hi MET help desk...
>
> My name is Elelwani Phaduli from South African Weather Service, I
have
> been using MET verification tool for the last three years. Currently
I want
> to install the software on the CRARY computer. After installing all
the
> dependencies, when I run the make install I get the following error.
>
> g++: numpbmsg.o: No such file or directory
> g++: openpb.o: No such file or directory
> g++: closepb.o: No such file or directory
> g++: readpb.o: No such file or directory
> g++: dumppb.o: No such file or directory
> make[4]: *** [pb2nc] Error 1
> make[4]: Leaving directory `/scratch/elelwani/met-5.2/src
> /tools/other/pb2nc'
> make[3]: *** [install-recursive] Error 1
> make[3]: Leaving directory `/scratch/elelwani/met-
5.2/src/tools/other'
> make[2]: *** [install-recursive] Error 1
> make[2]: Leaving directory `/scratch/elelwani/met-5.2/src/tools'
> make[1]: *** [install-recursive] Error 1
> make[1]: Leaving directory `/scratch/elelwani/met-5.2/src'
> make: *** [install-recursive] Error 1
>
> Other executables, such as mode, asscii2nc, gridstat are created but
they
> cannot work. When I try to use them I get an error (i.e. bin/mode:
error
> while loading shared libraries: libgsl.so.0: cannot open shared
object
> file: No such file or directory).
> I will be very grateful if you assist in solving this problem.
>
> Thank you..
> Elelwani Phaduli
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #79962] compilation error
From: Elelwani Phaduli
Time: Thu Apr 20 08:49:09 2017
Hi MET help....
Thank you for your previous assistance. Currently I managed to
install the software with grib2 functionality, I want run MET using
gib2 data. In your examples I did not see anywhere where you test the
software using grib2 data. Can you please give me some guidance on how
to use grib2 data with the MET software.
Thank you
Elelwani Phaduli(South African Weather Service)
-----Original Message-----
From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
Sent: Friday, March 24, 2017 6:38 PM
To: Elelwani Phaduli
Subject: Re: [rt.rap.ucar.edu #79962] compilation error
Hi.
I am sorry to hear that you are having problems compiling MET.
Thank you for letting me know about the error:
"bin/mode: error while loading shared libraries: libgsl.so.0: cannot
open shared object file: No such file or directory"
When you compiled MET, you likely did so using dynamic linking as
opposed to static linking. Dynamic linking means that rather than
checking for required libraries at compile time, the tools should
check for them at run time. When you run the mode tool, it is looking
for the GSL shared object library file named libgsl.so.0, as well as a
bunch of other shared object files. It's erroring out telling you
that it can't find the GSL shared object library file.
Hopefully, you can just set the LD_LIBRARY_PATH environment variable
to tell the tool where to look. The tools will, by default, look in
common areas like /usr/lib, /usr/local/lib and perhaps some others.
Please try including the path to libgsl.so.0 in your LD_LIBRARY_PATH,
and hopefully, that will make that error go away.
If that doesn't solve all of the problems you are experiencing, could
you please tell me what version you are installing?
Could you also please capture the output from configure, using
something
like:
*./configure --prefix=`pwd` --enable-grib2 --enable-modis --enable-
mode_graphics >& met_configure.log* and send me an email attachment of
met_configure.log?
Could you also please capture the output from "make install" and "make
test" if "make install" is successful, using something like:
*make install >& make_install.log &*
*make test >& make_test.log &*
and send me an email attachments of make_install.log and
make_test.log?
That may help me better determine what is going on.
Thank you!
Julie
On Fri, Mar 24, 2017 at 2:01 AM, Elelwani Phaduli via RT
<met_help at ucar.edu>
wrote:
>
> Fri Mar 24 02:01:11 2017: Request 79962 was acted upon.
> Transaction: Ticket created by Elelwani.Phaduli at weathersa.co.za
> Queue: met_help
> Subject: compilation error
> Owner: Nobody
> Requestors: Elelwani.Phaduli at weathersa.co.za
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=79962
> >
>
>
>
>
> Hi MET help desk...
>
> My name is Elelwani Phaduli from South African Weather Service, I
have
> been using MET verification tool for the last three years. Currently
I
> want to install the software on the CRARY computer. After installing
> all the dependencies, when I run the make install I get the
following error.
>
> g++: numpbmsg.o: No such file or directory
> g++: openpb.o: No such file or directory
> g++: closepb.o: No such file or directory
> g++: readpb.o: No such file or directory
> g++: dumppb.o: No such file or directory
> make[4]: *** [pb2nc] Error 1
> make[4]: Leaving directory `/scratch/elelwani/met-5.2/src
> /tools/other/pb2nc'
> make[3]: *** [install-recursive] Error 1
> make[3]: Leaving directory `/scratch/elelwani/met-
5.2/src/tools/other'
> make[2]: *** [install-recursive] Error 1
> make[2]: Leaving directory `/scratch/elelwani/met-5.2/src/tools'
> make[1]: *** [install-recursive] Error 1
> make[1]: Leaving directory `/scratch/elelwani/met-5.2/src'
> make: *** [install-recursive] Error 1
>
> Other executables, such as mode, asscii2nc, gridstat are created but
> they cannot work. When I try to use them I get an error (i.e.
> bin/mode: error while loading shared libraries: libgsl.so.0: cannot
> open shared object
> file: No such file or directory).
> I will be very grateful if you assist in solving this problem.
>
> Thank you..
> Elelwani Phaduli
>
>
------------------------------------------------
Subject: compilation error
From: Julie Prestopnik
Time: Thu Apr 20 10:14:19 2017
Hello
In the MET User's Guide for version 6.0:
http://www.dtcenter.org/met/users/docs/users_guide/MET_Users_Guide_v6.0.pdf
you can find more information about running MET with GRIB2 files on
page
53. This information is in the section "Configuration settings used
by the
MET tools" and "Settings common to multiple tool".
I hope this helps! Please let us know if you need further assistance.
Thanks!
Julie
On Thu, Apr 20, 2017 at 8:49 AM, Elelwani Phaduli via RT
<met_help at ucar.edu>
wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=79962 >
>
> Hi MET help....
>
> Thank you for your previous assistance. Currently I managed to
install
> the software with grib2 functionality, I want run MET using gib2
data. In
> your examples I did not see anywhere where you test the software
using
> grib2 data. Can you please give me some guidance on how to use grib2
data
> with the MET software.
>
> Thank you
> Elelwani Phaduli(South African Weather Service)
>
> -----Original Message-----
> From: Julie Prestopnik via RT [mailto:met_help at ucar.edu]
> Sent: Friday, March 24, 2017 6:38 PM
> To: Elelwani Phaduli
> Subject: Re: [rt.rap.ucar.edu #79962] compilation error
>
> Hi.
>
> I am sorry to hear that you are having problems compiling MET.
>
> Thank you for letting me know about the error:
>
> "bin/mode: error while loading shared libraries: libgsl.so.0: cannot
open
> shared object file: No such file or directory"
>
> When you compiled MET, you likely did so using dynamic linking as
opposed
> to static linking. Dynamic linking means that rather than checking
for
> required libraries at compile time, the tools should check for them
at run
> time. When you run the mode tool, it is looking for the GSL shared
object
> library file named libgsl.so.0, as well as a bunch of other shared
object
> files. It's erroring out telling you that it can't find the GSL
shared
> object library file.
>
> Hopefully, you can just set the LD_LIBRARY_PATH environment variable
to
> tell the tool where to look. The tools will, by default, look in
common
> areas like /usr/lib, /usr/local/lib and perhaps some others.
>
> Please try including the path to libgsl.so.0 in your
LD_LIBRARY_PATH, and
> hopefully, that will make that error go away.
>
>
> If that doesn't solve all of the problems you are experiencing,
could you
> please tell me what version you are installing?
>
> Could you also please capture the output from configure, using
something
> like:
>
>
>
> *./configure --prefix=`pwd` --enable-grib2 --enable-modis
> --enable-mode_graphics >& met_configure.log* and send me an email
> attachment of met_configure.log?
>
> Could you also please capture the output from "make install" and
"make
> test" if "make install" is successful, using something like:
>
>
> *make install >& make_install.log &*
>
>
> *make test >& make_test.log &*
> and send me an email attachments of make_install.log and
make_test.log?
>
> That may help me better determine what is going on.
>
> Thank you!
>
> Julie
>
> On Fri, Mar 24, 2017 at 2:01 AM, Elelwani Phaduli via RT <
> met_help at ucar.edu>
> wrote:
>
> >
> > Fri Mar 24 02:01:11 2017: Request 79962 was acted upon.
> > Transaction: Ticket created by Elelwani.Phaduli at weathersa.co.za
> > Queue: met_help
> > Subject: compilation error
> > Owner: Nobody
> > Requestors: Elelwani.Phaduli at weathersa.co.za
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=79962
> > >
> >
> >
> >
> >
> > Hi MET help desk...
> >
> > My name is Elelwani Phaduli from South African Weather Service, I
have
> > been using MET verification tool for the last three years.
Currently I
> > want to install the software on the CRARY computer. After
installing
> > all the dependencies, when I run the make install I get the
following
> error.
> >
> > g++: numpbmsg.o: No such file or directory
> > g++: openpb.o: No such file or directory
> > g++: closepb.o: No such file or directory
> > g++: readpb.o: No such file or directory
> > g++: dumppb.o: No such file or directory
> > make[4]: *** [pb2nc] Error 1
> > make[4]: Leaving directory `/scratch/elelwani/met-5.2/src
> > /tools/other/pb2nc'
> > make[3]: *** [install-recursive] Error 1
> > make[3]: Leaving directory `/scratch/elelwani/met-
5.2/src/tools/other'
> > make[2]: *** [install-recursive] Error 1
> > make[2]: Leaving directory `/scratch/elelwani/met-5.2/src/tools'
> > make[1]: *** [install-recursive] Error 1
> > make[1]: Leaving directory `/scratch/elelwani/met-5.2/src'
> > make: *** [install-recursive] Error 1
> >
> > Other executables, such as mode, asscii2nc, gridstat are created
but
> > they cannot work. When I try to use them I get an error (i.e.
> > bin/mode: error while loading shared libraries: libgsl.so.0:
cannot
> > open shared object
> > file: No such file or directory).
> > I will be very grateful if you assist in solving this problem.
> >
> > Thank you..
> > Elelwani Phaduli
> >
> >
>
>
>
>
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