[Met_help] [rt.rap.ucar.edu #79071] History for Error while loading shared libraries
Julie Prestopnik via RT
met_help at ucar.edu
Thu Mar 2 13:40:28 MST 2017
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Good day!
I'm trying to run this command
Rscript /usr/local/met-5.1/scripts/Rscripts/plot_tcmpr.R -title "max wind:
model-besttrack" -no_ee -dep "AMAX_WIND-BMAX_WIND" -lookin
tc_pairs_wp302016.tcst -plot "MEAN"
through MET v5.1 and I'm getting an error regarding loading shared
libraries (error while loading shared libraries: libgsl.so.19: cannot open
shared object file: No such file or directory). Please help!
Attached herewith is also the output of make test command after installing
MET, which also displays this same error.
Thank you!
--
*RAFAELLE JOEY DAROY OROSA*
BS Applied Physics
Department of Mathematics and Physics
College of Science, University of Santo Tomas
España, Manila, Philippines, 1015
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: Error while loading shared libraries
From: Julie Prestopnik
Time: Tue Jan 03 11:00:27 2017
Hi Rafaelle.
I see that you are having problems with METv5.1 finding the GSL
library.
By default, MET version 5.1 is compiled using dynamic linking. Rather
than
compiling the external library code in with the MET executables, which
is
called static linking, it looks for them at runtime. And it is
looking for
those "shared object" (.so) library files.
This should be easy to fix, we just need to tell it where to find
them, and
we do that by setting (or adding to) the LD_LIBRARY_PATH. Look in your
~/.cshrc file (or other shell startup configuration file). If
LD_LIBRARY_PATH is already defined in there, add the path to the gsl
lib to
the end of it. If not, add:
setenv LD_LIBRARY_PATH <path to gsl lib> (replacing <path to gsl
lib>
with the actual path)
Then, save that change and source that file. For example:
source ~/.cshrc
Please give that a try, and let me know if that fixes the issue.
Thanks,
Julie
On Tue, Jan 3, 2017 at 12:31 AM, Rafaelle Joey Orosa via RT <
met_help at ucar.edu> wrote:
>
> Tue Jan 03 00:31:27 2017: Request 79071 was acted upon.
> Transaction: Ticket created by rjdorosa at gmail.com
> Queue: met_help
> Subject: Error while loading shared libraries
> Owner: Nobody
> Requestors: rjdorosa at gmail.com
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=79071 >
>
>
> Good day!
>
> I'm trying to run this command
>
> Rscript /usr/local/met-5.1/scripts/Rscripts/plot_tcmpr.R -title
"max
> wind:
> model-besttrack" -no_ee -dep "AMAX_WIND-BMAX_WIND" -lookin
> tc_pairs_wp302016.tcst -plot "MEAN"
>
> through MET v5.1 and I'm getting an error regarding loading shared
> libraries (error while loading shared libraries: libgsl.so.19:
cannot open
> shared object file: No such file or directory). Please help!
>
> Attached herewith is also the output of make test command after
installing
> MET, which also displays this same error.
>
> Thank you!
>
> --
>
> *RAFAELLE JOEY DAROY OROSA*
> BS Applied Physics
> Department of Mathematics and Physics
> College of Science, University of Santo Tomas
> España, Manila, Philippines, 1015
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
Subject: Error while loading shared libraries
From: Rafaelle Joey Orosa
Time: Mon Jan 16 22:53:32 2017
Good day Ms. Julie!
I've successfully installed MET v5.1 and works perfectly. Though I
encountered a minor problem with MET upon the installation of NCL
v6.3.2.
After successfully installing (a working) NCL, MET somehow reverted
back to
the problem I encountered before, regarding GSL .so library file. Is
it
possible to install both programs in my computer?
Thank you!
On 4 January 2017 at 02:00, Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:
> Hi Rafaelle.
>
> I see that you are having problems with METv5.1 finding the GSL
library.
> By default, MET version 5.1 is compiled using dynamic linking.
Rather than
> compiling the external library code in with the MET executables,
which is
> called static linking, it looks for them at runtime. And it is
looking for
> those "shared object" (.so) library files.
>
> This should be easy to fix, we just need to tell it where to find
them, and
> we do that by setting (or adding to) the LD_LIBRARY_PATH. Look in
your
> ~/.cshrc file (or other shell startup configuration file). If
> LD_LIBRARY_PATH is already defined in there, add the path to the gsl
lib to
> the end of it. If not, add:
>
> setenv LD_LIBRARY_PATH <path to gsl lib> (replacing <path to gsl
lib>
> with the actual path)
>
> Then, save that change and source that file. For example:
>
> source ~/.cshrc
>
> Please give that a try, and let me know if that fixes the issue.
>
> Thanks,
> Julie
>
>
> On Tue, Jan 3, 2017 at 12:31 AM, Rafaelle Joey Orosa via RT <
> met_help at ucar.edu> wrote:
>
> >
> > Tue Jan 03 00:31:27 2017: Request 79071 was acted upon.
> > Transaction: Ticket created by rjdorosa at gmail.com
> > Queue: met_help
> > Subject: Error while loading shared libraries
> > Owner: Nobody
> > Requestors: rjdorosa at gmail.com
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=79071 >
> >
> >
> > Good day!
> >
> > I'm trying to run this command
> >
> > Rscript /usr/local/met-5.1/scripts/Rscripts/plot_tcmpr.R -title
"max
> > wind:
> > model-besttrack" -no_ee -dep "AMAX_WIND-BMAX_WIND" -lookin
> > tc_pairs_wp302016.tcst -plot "MEAN"
> >
> > through MET v5.1 and I'm getting an error regarding loading shared
> > libraries (error while loading shared libraries: libgsl.so.19:
cannot
> open
> > shared object file: No such file or directory). Please help!
> >
> > Attached herewith is also the output of make test command after
> installing
> > MET, which also displays this same error.
> >
> > Thank you!
> >
> > --
> >
> > *RAFAELLE JOEY DAROY OROSA*
> > BS Applied Physics
> > Department of Mathematics and Physics
> > College of Science, University of Santo Tomas
> > España, Manila, Philippines, 1015
> >
> >
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
>
--
*RAFAELLE JOEY DAROY OROSA*
BS Applied Physics
Department of Mathematics and Physics
College of Science, University of Santo Tomas
España, Manila, Philippines, 1015
------------------------------------------------
Subject: Error while loading shared libraries
From: Julie Prestopnik
Time: Tue Jan 17 09:19:39 2017
Hello.
This sounds like an issue with your environment. Are you running the
commands from a script? If so, is that script using an environment
where
you have the LD_LIBRARY_PATH set?
Julie
On Mon, Jan 16, 2017 at 10:53 PM, Rafaelle Joey Orosa via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=79071 >
>
> Good day Ms. Julie!
>
> I've successfully installed MET v5.1 and works perfectly. Though I
> encountered a minor problem with MET upon the installation of NCL
v6.3.2.
> After successfully installing (a working) NCL, MET somehow reverted
back to
> the problem I encountered before, regarding GSL .so library file. Is
it
> possible to install both programs in my computer?
>
> Thank you!
>
> On 4 January 2017 at 02:00, Julie Prestopnik via RT
<met_help at ucar.edu>
> wrote:
>
> > Hi Rafaelle.
> >
> > I see that you are having problems with METv5.1 finding the GSL
library.
> > By default, MET version 5.1 is compiled using dynamic linking.
Rather
> than
> > compiling the external library code in with the MET executables,
which is
> > called static linking, it looks for them at runtime. And it is
looking
> for
> > those "shared object" (.so) library files.
> >
> > This should be easy to fix, we just need to tell it where to find
them,
> and
> > we do that by setting (or adding to) the LD_LIBRARY_PATH. Look in
your
> > ~/.cshrc file (or other shell startup configuration file). If
> > LD_LIBRARY_PATH is already defined in there, add the path to the
gsl lib
> to
> > the end of it. If not, add:
> >
> > setenv LD_LIBRARY_PATH <path to gsl lib> (replacing <path to gsl
lib>
> > with the actual path)
> >
> > Then, save that change and source that file. For example:
> >
> > source ~/.cshrc
> >
> > Please give that a try, and let me know if that fixes the issue.
> >
> > Thanks,
> > Julie
> >
> >
> > On Tue, Jan 3, 2017 at 12:31 AM, Rafaelle Joey Orosa via RT <
> > met_help at ucar.edu> wrote:
> >
> > >
> > > Tue Jan 03 00:31:27 2017: Request 79071 was acted upon.
> > > Transaction: Ticket created by rjdorosa at gmail.com
> > > Queue: met_help
> > > Subject: Error while loading shared libraries
> > > Owner: Nobody
> > > Requestors: rjdorosa at gmail.com
> > > Status: new
> > > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=79071
> >
> > >
> > >
> > > Good day!
> > >
> > > I'm trying to run this command
> > >
> > > Rscript /usr/local/met-5.1/scripts/Rscripts/plot_tcmpr.R -title
"max
> > > wind:
> > > model-besttrack" -no_ee -dep "AMAX_WIND-BMAX_WIND" -lookin
> > > tc_pairs_wp302016.tcst -plot "MEAN"
> > >
> > > through MET v5.1 and I'm getting an error regarding loading
shared
> > > libraries (error while loading shared libraries: libgsl.so.19:
cannot
> > open
> > > shared object file: No such file or directory). Please help!
> > >
> > > Attached herewith is also the output of make test command after
> > installing
> > > MET, which also displays this same error.
> > >
> > > Thank you!
> > >
> > > --
> > >
> > > *RAFAELLE JOEY DAROY OROSA*
> > > BS Applied Physics
> > > Department of Mathematics and Physics
> > > College of Science, University of Santo Tomas
> > > España, Manila, Philippines, 1015
> > >
> > >
> >
> >
> > --
> > Julie Prestopnik
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Phone: 303.497.8399
> > Email: jpresto at ucar.edu
> >
> >
>
>
> --
>
> *RAFAELLE JOEY DAROY OROSA*
> BS Applied Physics
> Department of Mathematics and Physics
> College of Science, University of Santo Tomas
> España, Manila, Philippines, 1015
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
Subject: Error while loading shared libraries
From: Rafaelle Joey Orosa
Time: Tue Jan 17 16:59:30 2017
Yes, I'm using a script to run MET and requires GSL. In short, both
programs have different paths set for $LD_LIBRARY_PATH (Cairo for NCL,
GSL
for MET) and $PATH. Is there any way to resolve this especially in my
.bashrc? Or do I have to explicitly write the LD_LIBRARY_PATH to the
script
I'm using?
Thanks very much!!
On 18 January 2017 at 00:19, Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:
> Hello.
>
> This sounds like an issue with your environment. Are you running
the
> commands from a script? If so, is that script using an environment
where
> you have the LD_LIBRARY_PATH set?
>
> Julie
>
>
> On Mon, Jan 16, 2017 at 10:53 PM, Rafaelle Joey Orosa via RT <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=79071 >
> >
> > Good day Ms. Julie!
> >
> > I've successfully installed MET v5.1 and works perfectly. Though I
> > encountered a minor problem with MET upon the installation of NCL
v6.3.2.
> > After successfully installing (a working) NCL, MET somehow
reverted back
> to
> > the problem I encountered before, regarding GSL .so library file.
Is it
> > possible to install both programs in my computer?
> >
> > Thank you!
> >
> > On 4 January 2017 at 02:00, Julie Prestopnik via RT
<met_help at ucar.edu>
> > wrote:
> >
> > > Hi Rafaelle.
> > >
> > > I see that you are having problems with METv5.1 finding the GSL
> library.
> > > By default, MET version 5.1 is compiled using dynamic linking.
Rather
> > than
> > > compiling the external library code in with the MET executables,
which
> is
> > > called static linking, it looks for them at runtime. And it is
looking
> > for
> > > those "shared object" (.so) library files.
> > >
> > > This should be easy to fix, we just need to tell it where to
find them,
> > and
> > > we do that by setting (or adding to) the LD_LIBRARY_PATH. Look
in your
> > > ~/.cshrc file (or other shell startup configuration file). If
> > > LD_LIBRARY_PATH is already defined in there, add the path to the
gsl
> lib
> > to
> > > the end of it. If not, add:
> > >
> > > setenv LD_LIBRARY_PATH <path to gsl lib> (replacing <path to
gsl lib>
> > > with the actual path)
> > >
> > > Then, save that change and source that file. For example:
> > >
> > > source ~/.cshrc
> > >
> > > Please give that a try, and let me know if that fixes the issue.
> > >
> > > Thanks,
> > > Julie
> > >
> > >
> > > On Tue, Jan 3, 2017 at 12:31 AM, Rafaelle Joey Orosa via RT <
> > > met_help at ucar.edu> wrote:
> > >
> > > >
> > > > Tue Jan 03 00:31:27 2017: Request 79071 was acted upon.
> > > > Transaction: Ticket created by rjdorosa at gmail.com
> > > > Queue: met_help
> > > > Subject: Error while loading shared libraries
> > > > Owner: Nobody
> > > > Requestors: rjdorosa at gmail.com
> > > > Status: new
> > > > Ticket <URL: https://rt.rap.ucar.edu/rt/
> Ticket/Display.html?id=79071
> > >
> > > >
> > > >
> > > > Good day!
> > > >
> > > > I'm trying to run this command
> > > >
> > > > Rscript /usr/local/met-5.1/scripts/Rscripts/plot_tcmpr.R
-title
> "max
> > > > wind:
> > > > model-besttrack" -no_ee -dep "AMAX_WIND-BMAX_WIND"
-lookin
> > > > tc_pairs_wp302016.tcst -plot "MEAN"
> > > >
> > > > through MET v5.1 and I'm getting an error regarding loading
shared
> > > > libraries (error while loading shared libraries: libgsl.so.19:
cannot
> > > open
> > > > shared object file: No such file or directory). Please help!
> > > >
> > > > Attached herewith is also the output of make test command
after
> > > installing
> > > > MET, which also displays this same error.
> > > >
> > > > Thank you!
> > > >
> > > > --
> > > >
> > > > *RAFAELLE JOEY DAROY OROSA*
> > > > BS Applied Physics
> > > > Department of Mathematics and Physics
> > > > College of Science, University of Santo Tomas
> > > > España, Manila, Philippines, 1015
> > > >
> > > >
> > >
> > >
> > > --
> > > Julie Prestopnik
> > > National Center for Atmospheric Research
> > > Research Applications Laboratory
> > > Phone: 303.497.8399
> > > Email: jpresto at ucar.edu
> > >
> > >
> >
> >
> > --
> >
> > *RAFAELLE JOEY DAROY OROSA*
> > BS Applied Physics
> > Department of Mathematics and Physics
> > College of Science, University of Santo Tomas
> > España, Manila, Philippines, 1015
> >
> >
>
>
> --
> Julie Prestopnik
> National Center for Atmospheric Research
> Research Applications Laboratory
> Phone: 303.497.8399
> Email: jpresto at ucar.edu
>
>
--
*RAFAELLE JOEY DAROY OROSA*
BS Applied Physics
Department of Mathematics and Physics
College of Science, University of Santo Tomas
España, Manila, Philippines, 1015
------------------------------------------------
Subject: Error while loading shared libraries
From: Julie Prestopnik
Time: Wed Jan 18 09:53:10 2017
MET will need to be able to find GSL library through the
LD_LIBRARY_PATH.
You can set the LD_LIBRARY_PATH in your .bashrc file. Your script
will
need to use the bash shell in order to get that environment with the
LD_LIBRARY_PATH.
If the script is using the c-shell or some other shell than bash, then
you
will need to set up the LD_LIBRARY_PATH for that environment. I hope
that
helps!
Julie
On Tue, Jan 17, 2017 at 4:59 PM, Rafaelle Joey Orosa via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=79071 >
>
> Yes, I'm using a script to run MET and requires GSL. In short, both
> programs have different paths set for $LD_LIBRARY_PATH (Cairo for
NCL, GSL
> for MET) and $PATH. Is there any way to resolve this especially in
my
> .bashrc? Or do I have to explicitly write the LD_LIBRARY_PATH to the
script
> I'm using?
>
>
> Thanks very much!!
>
> On 18 January 2017 at 00:19, Julie Prestopnik via RT
<met_help at ucar.edu>
> wrote:
>
> > Hello.
> >
> > This sounds like an issue with your environment. Are you running
the
> > commands from a script? If so, is that script using an
environment where
> > you have the LD_LIBRARY_PATH set?
> >
> > Julie
> >
> >
> > On Mon, Jan 16, 2017 at 10:53 PM, Rafaelle Joey Orosa via RT <
> > met_help at ucar.edu> wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=79071 >
> > >
> > > Good day Ms. Julie!
> > >
> > > I've successfully installed MET v5.1 and works perfectly. Though
I
> > > encountered a minor problem with MET upon the installation of
NCL
> v6.3.2.
> > > After successfully installing (a working) NCL, MET somehow
reverted
> back
> > to
> > > the problem I encountered before, regarding GSL .so library
file. Is it
> > > possible to install both programs in my computer?
> > >
> > > Thank you!
> > >
> > > On 4 January 2017 at 02:00, Julie Prestopnik via RT
<met_help at ucar.edu
> >
> > > wrote:
> > >
> > > > Hi Rafaelle.
> > > >
> > > > I see that you are having problems with METv5.1 finding the
GSL
> > library.
> > > > By default, MET version 5.1 is compiled using dynamic linking.
> Rather
> > > than
> > > > compiling the external library code in with the MET
executables,
> which
> > is
> > > > called static linking, it looks for them at runtime. And it
is
> looking
> > > for
> > > > those "shared object" (.so) library files.
> > > >
> > > > This should be easy to fix, we just need to tell it where to
find
> them,
> > > and
> > > > we do that by setting (or adding to) the LD_LIBRARY_PATH. Look
in
> your
> > > > ~/.cshrc file (or other shell startup configuration file). If
> > > > LD_LIBRARY_PATH is already defined in there, add the path to
the gsl
> > lib
> > > to
> > > > the end of it. If not, add:
> > > >
> > > > setenv LD_LIBRARY_PATH <path to gsl lib> (replacing <path to
gsl
> lib>
> > > > with the actual path)
> > > >
> > > > Then, save that change and source that file. For example:
> > > >
> > > > source ~/.cshrc
> > > >
> > > > Please give that a try, and let me know if that fixes the
issue.
> > > >
> > > > Thanks,
> > > > Julie
> > > >
> > > >
> > > > On Tue, Jan 3, 2017 at 12:31 AM, Rafaelle Joey Orosa via RT <
> > > > met_help at ucar.edu> wrote:
> > > >
> > > > >
> > > > > Tue Jan 03 00:31:27 2017: Request 79071 was acted upon.
> > > > > Transaction: Ticket created by rjdorosa at gmail.com
> > > > > Queue: met_help
> > > > > Subject: Error while loading shared libraries
> > > > > Owner: Nobody
> > > > > Requestors: rjdorosa at gmail.com
> > > > > Status: new
> > > > > Ticket <URL: https://rt.rap.ucar.edu/rt/
> > Ticket/Display.html?id=79071
> > > >
> > > > >
> > > > >
> > > > > Good day!
> > > > >
> > > > > I'm trying to run this command
> > > > >
> > > > > Rscript /usr/local/met-5.1/scripts/Rscripts/plot_tcmpr.R
-title
> > "max
> > > > > wind:
> > > > > model-besttrack" -no_ee -dep "AMAX_WIND-BMAX_WIND"
-lookin
> > > > > tc_pairs_wp302016.tcst -plot "MEAN"
> > > > >
> > > > > through MET v5.1 and I'm getting an error regarding loading
shared
> > > > > libraries (error while loading shared libraries:
libgsl.so.19:
> cannot
> > > > open
> > > > > shared object file: No such file or directory). Please help!
> > > > >
> > > > > Attached herewith is also the output of make test command
after
> > > > installing
> > > > > MET, which also displays this same error.
> > > > >
> > > > > Thank you!
> > > > >
> > > > > --
> > > > >
> > > > > *RAFAELLE JOEY DAROY OROSA*
> > > > > BS Applied Physics
> > > > > Department of Mathematics and Physics
> > > > > College of Science, University of Santo Tomas
> > > > > España, Manila, Philippines, 1015
> > > > >
> > > > >
> > > >
> > > >
> > > > --
> > > > Julie Prestopnik
> > > > National Center for Atmospheric Research
> > > > Research Applications Laboratory
> > > > Phone: 303.497.8399
> > > > Email: jpresto at ucar.edu
> > > >
> > > >
> > >
> > >
> > > --
> > >
> > > *RAFAELLE JOEY DAROY OROSA*
> > > BS Applied Physics
> > > Department of Mathematics and Physics
> > > College of Science, University of Santo Tomas
> > > España, Manila, Philippines, 1015
> > >
> > >
> >
> >
> > --
> > Julie Prestopnik
> > National Center for Atmospheric Research
> > Research Applications Laboratory
> > Phone: 303.497.8399
> > Email: jpresto at ucar.edu
> >
> >
>
>
> --
>
> *RAFAELLE JOEY DAROY OROSA*
> BS Applied Physics
> Department of Mathematics and Physics
> College of Science, University of Santo Tomas
> España, Manila, Philippines, 1015
>
>
--
Julie Prestopnik
National Center for Atmospheric Research
Research Applications Laboratory
Phone: 303.497.8399
Email: jpresto at ucar.edu
------------------------------------------------
More information about the Met_help
mailing list