[Met_help] [rt.rap.ucar.edu #80272] History for MET 6.0 Compiling Issue

Tue Jun 6 12:43:32 MDT 2017

----------------------------------------------------------------
  Initial Request
----------------------------------------------------------------

Hi,

I have troubles in compiling the MET 6.0 (met-6.0_bugfix.20170419) on macOS
Sierra. I have installed the libraries NetCDF C, NetCDF C++, Zlib, HDF5,
BUFRLIB following the online tutorial.
http://www.dtcenter.org/met/users/support/online_tutorial/METv6.0/tutorial.php?name=compilation&category=req_libs

I checked every library and they all passed the tests. I can install MET
6.0 share file without executable files generated. I attached the documents
for make_test.log and config.log for your reference, as well as the code I
used to compile (GUI compiler).  The NetCDF C, NetCDF C++ are installed in
netcdf_C file.

*export CC=gcc*

*export CXX=g++*

*export F77=gfortran*

*export MET_NETCDF=/Users/yating/Desktop/MET_LIB/netcdf_C*

*export MET_HDF5=/Users/yating/Desktop/MET_LIB/hdf5 *

*export MET_BUFR=/Users/yating/Downloads/BUFRLIB_v10-2-3 *

*export MET_GSL=/Users/yating/Desktop/MET_LIB/gsl *

*./configure --prefix=/Users/yating/Desktop/MET_LIB/MET6*

I have cleaned and recompiled several times and removed and downloaded the
MET file, but it still had the same errors. I will be appreciated if you
can give me any help. Thank you for your time.

Thanks,

Yating

----------------------------------------------------------------
  Complete Ticket History
----------------------------------------------------------------

Subject: MET 6.0 Compiling Issue
From: Julie Prestopnik
Time: Wed Apr 26 11:05:39 2017

I'd be happy to try to help you with this issue, but we can only
provide
direct support to registered users of MET.  We do this to ensure that
we
remain in compliance with U.S. export control laws.  You can fill out
the
registration form here:
   http://www.dtcenter.org/met/users/downloads/index.php
Just enter your email address and hit enter.   That should take you to
the
registration page.

Please write me back once you've filled that out, and I should be able
to
offer more help.

Thanks,
Julie

On Wed, Apr 26, 2017 at 10:51 AM, Yating Zhang via RT
<met_help at ucar.edu>
wrote:

>
> Wed Apr 26 10:51:09 2017: Request 80272 was acted upon.
> Transaction: Ticket created by zhyating at terpmail.umd.edu
>        Queue: met_help
>      Subject: MET 6.0 Compiling Issue
>        Owner: Nobody
>   Requestors: zhyating at terpmail.umd.edu
>       Status: new
>  Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
>
>
> Hi,
>
> I have troubles in compiling the MET 6.0 (met-6.0_bugfix.20170419)
on macOS
> Sierra. I have installed the libraries NetCDF C, NetCDF C++, Zlib,
HDF5,
> BUFRLIB following the online tutorial.
> http://www.dtcenter.org/met/users/support/online_tutorial/
> METv6.0/tutorial.php?name=compilation&category=req_libs
>
> I checked every library and they all passed the tests. I can install
MET
> 6.0 share file without executable files generated. I attached the
documents
> for make_test.log and config.log for your reference, as well as the
code I
> used to compile (GUI compiler).  The NetCDF C, NetCDF C++ are
installed in
> netcdf_C file.
>
> *export CC=gcc*
>
> *export CXX=g++*
>
> *export F77=gfortran*
>
> *export MET_NETCDF=/Users/yating/Desktop/MET_LIB/netcdf_C*
>
> *export MET_HDF5=/Users/yating/Desktop/MET_LIB/hdf5 *
>
> *export MET_BUFR=/Users/yating/Downloads/BUFRLIB_v10-2-3 *
>
> *export MET_GSL=/Users/yating/Desktop/MET_LIB/gsl *
>
> *./configure --prefix=/Users/yating/Desktop/MET_LIB/MET6*
>
>
> I have cleaned and recompiled several times and removed and
downloaded the
> MET file, but it still had the same errors. I will be appreciated if
you
> can give me any help. Thank you for your time.
>
> Thanks,
>
> Yating
>
>

------------------------------------------------
Subject: MET 6.0 Compiling Issue
From: Yating Zhang
Time: Wed Apr 26 13:53:20 2017

Hi Julie,

I have completed the registration.

Best,

Yating

On Wed, Apr 26, 2017 at 1:05 PM, Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:

> I'd be happy to try to help you with this issue, but we can only
provide
> direct support to registered users of MET.  We do this to ensure
that we
> remain in compliance with U.S. export control laws.  You can fill
out the
> registration form here:
>    http://www.dtcenter.org/met/users/downloads/index.php
> Just enter your email address and hit enter.   That should take you
to the
> registration page.
>
> Please write me back once you've filled that out, and I should be
able to
> offer more help.
>
> Thanks,
> Julie
>
> On Wed, Apr 26, 2017 at 10:51 AM, Yating Zhang via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > Wed Apr 26 10:51:09 2017: Request 80272 was acted upon.
> > Transaction: Ticket created by zhyating at terpmail.umd.edu
> >        Queue: met_help
> >      Subject: MET 6.0 Compiling Issue
> >        Owner: Nobody
> >   Requestors: zhyating at terpmail.umd.edu
> >       Status: new
> >  Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> >
> >
> > Hi,
> >
> > I have troubles in compiling the MET 6.0 (met-6.0_bugfix.20170419)
on
> macOS
> > Sierra. I have installed the libraries NetCDF C, NetCDF C++, Zlib,
HDF5,
> > BUFRLIB following the online tutorial.
> > http://www.dtcenter.org/met/users/support/online_tutorial/
> > METv6.0/tutorial.php?name=compilation&category=req_libs
> >
> > I checked every library and they all passed the tests. I can
install MET
> > 6.0 share file without executable files generated. I attached the
> documents
> > for make_test.log and config.log for your reference, as well as
the code
> I
> > used to compile (GUI compiler).  The NetCDF C, NetCDF C++ are
installed
> in
> > netcdf_C file.
> >
> > *export CC=gcc*
> >
> > *export CXX=g++*
> >
> > *export F77=gfortran*
> >
> > *export MET_NETCDF=/Users/yating/Desktop/MET_LIB/netcdf_C*
> >
> > *export MET_HDF5=/Users/yating/Desktop/MET_LIB/hdf5 *
> >
> > *export MET_BUFR=/Users/yating/Downloads/BUFRLIB_v10-2-3 *
> >
> > *export MET_GSL=/Users/yating/Desktop/MET_LIB/gsl *
> >
> > *./configure --prefix=/Users/yating/Desktop/MET_LIB/MET6*
> >
> >
> > I have cleaned and recompiled several times and removed and
downloaded
> the
> > MET file, but it still had the same errors. I will be appreciated
if you
> > can give me any help. Thank you for your time.
> >
> > Thanks,
> >
> > Yating
> >
> >
>
>

------------------------------------------------
Subject: MET 6.0 Compiling Issue
From: Yating Zhang
Time: Wed Apr 26 14:00:49 2017

Hi Julie,

I got an ID for the ticket [rt.rap.ucar.edu #80272].

Best,

Yating

On Wed, Apr 26, 2017 at 3:52 PM, Yating Zhang
<zhyating at terpmail.umd.edu>
wrote:

> Hi Julie,
>
> I have completed the registration.
>
> Best,
>
> Yating
>
> On Wed, Apr 26, 2017 at 1:05 PM, Julie Prestopnik via RT <
> met_help at ucar.edu> wrote:
>
>> I'd be happy to try to help you with this issue, but we can only
provide
>> direct support to registered users of MET.  We do this to ensure
that we
>> remain in compliance with U.S. export control laws.  You can fill
out the
>> registration form here:
>>    http://www.dtcenter.org/met/users/downloads/index.php
>> Just enter your email address and hit enter.   That should take you
to the
>> registration page.
>>
>> Please write me back once you've filled that out, and I should be
able to
>> offer more help.
>>
>> Thanks,
>> Julie
>>
>> On Wed, Apr 26, 2017 at 10:51 AM, Yating Zhang via RT
<met_help at ucar.edu>
>> wrote:
>>
>> >
>> > Wed Apr 26 10:51:09 2017: Request 80272 was acted upon.
>> > Transaction: Ticket created by zhyating at terpmail.umd.edu
>> >        Queue: met_help
>> >      Subject: MET 6.0 Compiling Issue
>> >        Owner: Nobody
>> >   Requestors: zhyating at terpmail.umd.edu
>> >       Status: new
>> >  Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
>> >
>> >
>> > Hi,
>> >
>> > I have troubles in compiling the MET 6.0 (met-
6.0_bugfix.20170419) on
>> macOS
>> > Sierra. I have installed the libraries NetCDF C, NetCDF C++,
Zlib, HDF5,
>> > BUFRLIB following the online tutorial.
>> > http://www.dtcenter.org/met/users/support/online_tutorial/
>> > METv6.0/tutorial.php?name=compilation&category=req_libs
>> >
>> > I checked every library and they all passed the tests. I can
install MET
>> > 6.0 share file without executable files generated. I attached the
>> documents
>> > for make_test.log and config.log for your reference, as well as
the
>> code I
>> > used to compile (GUI compiler).  The NetCDF C, NetCDF C++ are
installed
>> in
>> > netcdf_C file.
>> >
>> > *export CC=gcc*
>> >
>> > *export CXX=g++*
>> >
>> > *export F77=gfortran*
>> >
>> > *export MET_NETCDF=/Users/yating/Desktop/MET_LIB/netcdf_C*
>> >
>> > *export MET_HDF5=/Users/yating/Desktop/MET_LIB/hdf5 *
>> >
>> > *export MET_BUFR=/Users/yating/Downloads/BUFRLIB_v10-2-3 *
>> >
>> > *export MET_GSL=/Users/yating/Desktop/MET_LIB/gsl *
>> >
>> > *./configure --prefix=/Users/yating/Desktop/MET_LIB/MET6*
>> >
>> >
>> > I have cleaned and recompiled several times and removed and
downloaded
>> the
>> > MET file, but it still had the same errors. I will be appreciated
if you
>> > can give me any help. Thank you for your time.
>> >
>> > Thanks,
>> >
>> > Yating
>> >
>> >
>>
>>
>

------------------------------------------------
Subject: MET 6.0 Compiling Issue
From: Julie Prestopnik
Time: Wed Apr 26 14:52:33 2017

Thank you, Yating.

I'm sorry to hear that you are having problems with met-6.0.

I see the following error in your make_test.log file:

fatal error: netcdf: No such file or directory
 #include <netcdf>

It looks like MET is having a difficult time finding the file
"netcdf",
which is included in the NetCDF-CXX installation.  I see in your
config.log
that you have defined MET_NETCDF to be
/Users/yating/Desktop/MET_LIB/netcdf_C.

Here is a quick reference checklist for NetCDF4C++ installation that
you
can use to see if you have the necessary files:

Files for NetCDF4 C:

$MET_NETCDF/include/netcdf.h
$MET_NETCDF/lib/libnetcdf.a
$MET_NETCDF/lib/libnetcdf.so

Files for NetCDF4 C++:

$MET_NETCDF/include/netcdf
$MET_NETCDF/lib/libnetcdf_c++4.a
$MET_NETCDF/lib/libnetcdf_c++4.so

Files for NetCDF3 C++ (not required, if --disabled-netcdf4 is
activated):

$MET_NETCDF/include/netcdf.hh
$MET_NETCDF/lib/libnetcdf_c++.a
$MET_NETCDF/lib/libnetcdf_c++.so

Please take a look and see if those files exist and let me know.  If
they
do exist, could you please also attach your make_install.log file for
me?

Thanks!

Julie

On Wed, Apr 26, 2017 at 1:53 PM, Yating Zhang via RT
<met_help at ucar.edu>
wrote:

>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
>
> Hi Julie,
>
> I have completed the registration.
>
> Best,
>
> Yating
>
> On Wed, Apr 26, 2017 at 1:05 PM, Julie Prestopnik via RT <
> met_help at ucar.edu>
> wrote:
>
> > I'd be happy to try to help you with this issue, but we can only
provide
> > direct support to registered users of MET.  We do this to ensure
that we
> > remain in compliance with U.S. export control laws.  You can fill
out the
> > registration form here:
> >    http://www.dtcenter.org/met/users/downloads/index.php
> > Just enter your email address and hit enter.   That should take
you to
> the
> > registration page.
> >
> > Please write me back once you've filled that out, and I should be
able to
> > offer more help.
> >
> > Thanks,
> > Julie
> >
> > On Wed, Apr 26, 2017 at 10:51 AM, Yating Zhang via RT
<met_help at ucar.edu
> >
> > wrote:
> >
> > >
> > > Wed Apr 26 10:51:09 2017: Request 80272 was acted upon.
> > > Transaction: Ticket created by zhyating at terpmail.umd.edu
> > >        Queue: met_help
> > >      Subject: MET 6.0 Compiling Issue
> > >        Owner: Nobody
> > >   Requestors: zhyating at terpmail.umd.edu
> > >       Status: new
> > >  Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272
> >
> > >
> > >
> > > Hi,
> > >
> > > I have troubles in compiling the MET 6.0 (met-
6.0_bugfix.20170419) on
> > macOS
> > > Sierra. I have installed the libraries NetCDF C, NetCDF C++,
Zlib,
> HDF5,
> > > BUFRLIB following the online tutorial.
> > > http://www.dtcenter.org/met/users/support/online_tutorial/
> > > METv6.0/tutorial.php?name=compilation&category=req_libs
> > >
> > > I checked every library and they all passed the tests. I can
install
> MET
> > > 6.0 share file without executable files generated. I attached
the
> > documents
> > > for make_test.log and config.log for your reference, as well as
the
> code
> > I
> > > used to compile (GUI compiler).  The NetCDF C, NetCDF C++ are
installed
> > in
> > > netcdf_C file.
> > >
> > > *export CC=gcc*
> > >
> > > *export CXX=g++*
> > >
> > > *export F77=gfortran*
> > >
> > > *export MET_NETCDF=/Users/yating/Desktop/MET_LIB/netcdf_C*
> > >
> > > *export MET_HDF5=/Users/yating/Desktop/MET_LIB/hdf5 *
> > >
> > > *export MET_BUFR=/Users/yating/Downloads/BUFRLIB_v10-2-3 *
> > >
> > > *export MET_GSL=/Users/yating/Desktop/MET_LIB/gsl *
> > >
> > > *./configure --prefix=/Users/yating/Desktop/MET_LIB/MET6*
> > >
> > >
> > > I have cleaned and recompiled several times and removed and
downloaded
> > the
> > > MET file, but it still had the same errors. I will be
appreciated if
> you
> > > can give me any help. Thank you for your time.
> > >
> > > Thanks,
> > >
> > > Yating
> > >
> > >
> >
> >
>
>

------------------------------------------------
Subject: MET 6.0 Compiling Issue
From: Yating Zhang
Time: Thu Apr 27 12:47:36 2017

Hi Julie,

Thank you for your reply. I don't have the
*$MET_NETCDF/lib/libnetcdf.so*
and $MET_NETCDF/lib/libnetcdf_c++.*so*. I recompiled NetCDF C and
NetCDF
C++, but the two were still not generated.

Thanks,

Yating

On Wed, Apr 26, 2017 at 4:52 PM, Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:

> Thank you, Yating.
>
> I'm sorry to hear that you are having problems with met-6.0.
>
> I see the following error in your make_test.log file:
>
> fatal error: netcdf: No such file or directory
>  #include <netcdf>
>
> It looks like MET is having a difficult time finding the file
"netcdf",
> which is included in the NetCDF-CXX installation.  I see in your
config.log
> that you have defined MET_NETCDF to be
> /Users/yating/Desktop/MET_LIB/netcdf_C.
>
> Here is a quick reference checklist for NetCDF4C++ installation that
you
> can use to see if you have the necessary files:
>
> Files for NetCDF4 C:
>
> $MET_NETCDF/include/netcdf.h
> $MET_NETCDF/lib/libnetcdf.a
> $MET_NETCDF/lib/libnetcdf.so
>
> Files for NetCDF4 C++:
>
> $MET_NETCDF/include/netcdf
> $MET_NETCDF/lib/libnetcdf_c++4.a
> $MET_NETCDF/lib/libnetcdf_c++4.so
>
> Files for NetCDF3 C++ (not required, if --disabled-netcdf4 is
activated):
>
> $MET_NETCDF/include/netcdf.hh
> $MET_NETCDF/lib/libnetcdf_c++.a
> $MET_NETCDF/lib/libnetcdf_c++.so
>
> Please take a look and see if those files exist and let me know.  If
they
> do exist, could you please also attach your make_install.log file
for me?
>
> Thanks!
>
> Julie
>
>
> On Wed, Apr 26, 2017 at 1:53 PM, Yating Zhang via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> >
> > Hi Julie,
> >
> > I have completed the registration.
> >
> > Best,
> >
> > Yating
> >
> > On Wed, Apr 26, 2017 at 1:05 PM, Julie Prestopnik via RT <
> > met_help at ucar.edu>
> > wrote:
> >
> > > I'd be happy to try to help you with this issue, but we can only
> provide
> > > direct support to registered users of MET.  We do this to ensure
that
> we
> > > remain in compliance with U.S. export control laws.  You can
fill out
> the
> > > registration form here:
> > >    http://www.dtcenter.org/met/users/downloads/index.php
> > > Just enter your email address and hit enter.   That should take
you to
> > the
> > > registration page.
> > >
> > > Please write me back once you've filled that out, and I should
be able
> to
> > > offer more help.
> > >
> > > Thanks,
> > > Julie
> > >
> > > On Wed, Apr 26, 2017 at 10:51 AM, Yating Zhang via RT <
> met_help at ucar.edu
> > >
> > > wrote:
> > >
> > > >
> > > > Wed Apr 26 10:51:09 2017: Request 80272 was acted upon.
> > > > Transaction: Ticket created by zhyating at terpmail.umd.edu
> > > >        Queue: met_help
> > > >      Subject: MET 6.0 Compiling Issue
> > > >        Owner: Nobody
> > > >   Requestors: zhyating at terpmail.umd.edu
> > > >       Status: new
> > > >  Ticket <URL: https://rt.rap.ucar.edu/rt/Tic
> ket/Display.html?id=80272
> > >
> > > >
> > > >
> > > > Hi,
> > > >
> > > > I have troubles in compiling the MET 6.0 (met-
6.0_bugfix.20170419) on
> > > macOS
> > > > Sierra. I have installed the libraries NetCDF C, NetCDF C++,
Zlib,
> > HDF5,
> > > > BUFRLIB following the online tutorial.
> > > > http://www.dtcenter.org/met/users/support/online_tutorial/
> > > > METv6.0/tutorial.php?name=compilation&category=req_libs
> > > >
> > > > I checked every library and they all passed the tests. I can
install
> > MET
> > > > 6.0 share file without executable files generated. I attached
the
> > > documents
> > > > for make_test.log and config.log for your reference, as well
as the
> > code
> > > I
> > > > used to compile (GUI compiler).  The NetCDF C, NetCDF C++ are
> installed
> > > in
> > > > netcdf_C file.
> > > >
> > > > *export CC=gcc*
> > > >
> > > > *export CXX=g++*
> > > >
> > > > *export F77=gfortran*
> > > >
> > > > *export MET_NETCDF=/Users/yating/Desktop/MET_LIB/netcdf_C*
> > > >
> > > > *export MET_HDF5=/Users/yating/Desktop/MET_LIB/hdf5 *
> > > >
> > > > *export MET_BUFR=/Users/yating/Downloads/BUFRLIB_v10-2-3 *
> > > >
> > > > *export MET_GSL=/Users/yating/Desktop/MET_LIB/gsl *
> > > >
> > > > *./configure --prefix=/Users/yating/Desktop/MET_LIB/MET6*
> > > >
> > > >
> > > > I have cleaned and recompiled several times and removed and
> downloaded
> > > the
> > > > MET file, but it still had the same errors. I will be
appreciated if
> > you
> > > > can give me any help. Thank you for your time.
> > > >
> > > > Thanks,
> > > >
> > > > Yating
> > > >
> > > >
> > >
> > >
> >
> >
>
>

------------------------------------------------
Subject: MET 6.0 Compiling Issue
From: Julie Prestopnik
Time: Thu Apr 27 13:07:09 2017

Hi Yating.

I am sorry to hear that you are still having difficulty with the
netcdf
library files.   Perhaps it would help if I gave more detailed
instructions
on how I compiled specific versions of the HDF5 (first, I installed
zlib),
NetCDF C, and NetCDF CXX packages (below).

I set the following environment variables:

export iprefix=/usrx/local/dev/met/met-6.0/external_libs
export libdir=/usrx/local/dev/met/met-6.0/external_libs/lib
export incdir=/usrx/local/dev/met/met-6.0/external_libs/include

and then did the following:

Download the zlib package:
http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-1.2.6.tar
Unpack the package (tar -xvf)
cd zlib-1.2.6
./configure --prefix=$iprefix/ --enable-shared
make; make install

Download the HDF5 package:
https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-
1.8.18/src/hdf5-1.8.18.tar.gz
Unpack the package (tar -xvf)
./configure --prefix=$iprefix --with-zlib=$libdir LDFLAGS=-L$libdir
CPPFLAGS=-I$incdir
make
make check
make install

Download the NetCDF C package:
ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.zip
Unpack the package (unzip)
cd netcdf-4.4.1.1
export FC=''
export F90=''
./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-I$incdir
make; make install

Download the NetCDF CXX package:
https://www.gfd-dennou.org/arch/netcdf/unidata-mirror/netcdf-cxx4-
4.3.0.tar.gz
Unpack the package (tar -zxf)
cd netcdf-cxx4-4.3.0
./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-I$incdir
make; make install

Please give those a try and let me know how it works out.  Please let
me
know if you have any questions about these instructions.

Thanks,
Julie

On Thu, Apr 27, 2017 at 12:47 PM, Yating Zhang via RT
<met_help at ucar.edu>
wrote:

>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
>
> Hi Julie,
>
> Thank you for your reply. I don't have the
*$MET_NETCDF/lib/libnetcdf.so*
> and $MET_NETCDF/lib/libnetcdf_c++.*so*. I recompiled NetCDF C and
NetCDF
> C++, but the two were still not generated.
>
> Thanks,
>
> Yating
>
> On Wed, Apr 26, 2017 at 4:52 PM, Julie Prestopnik via RT <
> met_help at ucar.edu>
> wrote:
>
> > Thank you, Yating.
> >
> > I'm sorry to hear that you are having problems with met-6.0.
> >
> > I see the following error in your make_test.log file:
> >
> > fatal error: netcdf: No such file or directory
> >  #include <netcdf>
> >
> > It looks like MET is having a difficult time finding the file
"netcdf",
> > which is included in the NetCDF-CXX installation.  I see in your
> config.log
> > that you have defined MET_NETCDF to be
> > /Users/yating/Desktop/MET_LIB/netcdf_C.
> >
> > Here is a quick reference checklist for NetCDF4C++ installation
that you
> > can use to see if you have the necessary files:
> >
> > Files for NetCDF4 C:
> >
> > $MET_NETCDF/include/netcdf.h
> > $MET_NETCDF/lib/libnetcdf.a
> > $MET_NETCDF/lib/libnetcdf.so
> >
> > Files for NetCDF4 C++:
> >
> > $MET_NETCDF/include/netcdf
> > $MET_NETCDF/lib/libnetcdf_c++4.a
> > $MET_NETCDF/lib/libnetcdf_c++4.so
> >
> > Files for NetCDF3 C++ (not required, if --disabled-netcdf4 is
activated):
> >
> > $MET_NETCDF/include/netcdf.hh
> > $MET_NETCDF/lib/libnetcdf_c++.a
> > $MET_NETCDF/lib/libnetcdf_c++.so
> >
> > Please take a look and see if those files exist and let me know.
If they
> > do exist, could you please also attach your make_install.log file
for me?
> >
> > Thanks!
> >
> > Julie
> >
> >
> > On Wed, Apr 26, 2017 at 1:53 PM, Yating Zhang via RT
<met_help at ucar.edu>
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> > >
> > > Hi Julie,
> > >
> > > I have completed the registration.
> > >
> > > Best,
> > >
> > > Yating
> > >
> > > On Wed, Apr 26, 2017 at 1:05 PM, Julie Prestopnik via RT <
> > > met_help at ucar.edu>
> > > wrote:
> > >
> > > > I'd be happy to try to help you with this issue, but we can
only
> > provide
> > > > direct support to registered users of MET.  We do this to
ensure that
> > we
> > > > remain in compliance with U.S. export control laws.  You can
fill out
> > the
> > > > registration form here:
> > > >    http://www.dtcenter.org/met/users/downloads/index.php
> > > > Just enter your email address and hit enter.   That should
take you
> to
> > > the
> > > > registration page.
> > > >
> > > > Please write me back once you've filled that out, and I should
be
> able
> > to
> > > > offer more help.
> > > >
> > > > Thanks,
> > > > Julie
> > > >
> > > > On Wed, Apr 26, 2017 at 10:51 AM, Yating Zhang via RT <
> > met_help at ucar.edu
> > > >
> > > > wrote:
> > > >
> > > > >
> > > > > Wed Apr 26 10:51:09 2017: Request 80272 was acted upon.
> > > > > Transaction: Ticket created by zhyating at terpmail.umd.edu
> > > > >        Queue: met_help
> > > > >      Subject: MET 6.0 Compiling Issue
> > > > >        Owner: Nobody
> > > > >   Requestors: zhyating at terpmail.umd.edu
> > > > >       Status: new
> > > > >  Ticket <URL: https://rt.rap.ucar.edu/rt/Tic
> > ket/Display.html?id=80272
> > > >
> > > > >
> > > > >
> > > > > Hi,
> > > > >
> > > > > I have troubles in compiling the MET 6.0 (met-
6.0_bugfix.20170419)
> on
> > > > macOS
> > > > > Sierra. I have installed the libraries NetCDF C, NetCDF C++,
Zlib,
> > > HDF5,
> > > > > BUFRLIB following the online tutorial.
> > > > > http://www.dtcenter.org/met/users/support/online_tutorial/
> > > > > METv6.0/tutorial.php?name=compilation&category=req_libs
> > > > >
> > > > > I checked every library and they all passed the tests. I can
> install
> > > MET
> > > > > 6.0 share file without executable files generated. I
attached the
> > > > documents
> > > > > for make_test.log and config.log for your reference, as well
as the
> > > code
> > > > I
> > > > > used to compile (GUI compiler).  The NetCDF C, NetCDF C++
are
> > installed
> > > > in
> > > > > netcdf_C file.
> > > > >
> > > > > *export CC=gcc*
> > > > >
> > > > > *export CXX=g++*
> > > > >
> > > > > *export F77=gfortran*
> > > > >
> > > > > *export MET_NETCDF=/Users/yating/Desktop/MET_LIB/netcdf_C*
> > > > >
> > > > > *export MET_HDF5=/Users/yating/Desktop/MET_LIB/hdf5 *
> > > > >
> > > > > *export MET_BUFR=/Users/yating/Downloads/BUFRLIB_v10-2-3 *
> > > > >
> > > > > *export MET_GSL=/Users/yating/Desktop/MET_LIB/gsl *
> > > > >
> > > > > *./configure --prefix=/Users/yating/Desktop/MET_LIB/MET6*
> > > > >
> > > > >
> > > > > I have cleaned and recompiled several times and removed and
> > downloaded
> > > > the
> > > > > MET file, but it still had the same errors. I will be
appreciated
> if
> > > you
> > > > > can give me any help. Thank you for your time.
> > > > >
> > > > > Thanks,
> > > > >
> > > > > Yating
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>

------------------------------------------------
Subject: MET 6.0 Compiling Issue
From: Yating Zhang
Time: Sun Apr 30 17:09:41 2017

Hi Julie,

Thank you for you reply. I think there is no problem with these
libraries.
Could you share the code for compiling the MET6.0? Have you set any
path
for the include file for netCDF? I have added the library path,
because I
don't have the *.so files.

I attached the two files for the config.log and make_install.log,
respectively.

Thanks,

Yating

On Thu, Apr 27, 2017 at 3:07 PM, Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:

> Hi Yating.
>
> I am sorry to hear that you are still having difficulty with the
netcdf
> library files.   Perhaps it would help if I gave more detailed
instructions
> on how I compiled specific versions of the HDF5 (first, I installed
zlib),
> NetCDF C, and NetCDF CXX packages (below).
>
> I set the following environment variables:
>
> export iprefix=/usrx/local/dev/met/met-6.0/external_libs
> export libdir=/usrx/local/dev/met/met-6.0/external_libs/lib
> export incdir=/usrx/local/dev/met/met-6.0/external_libs/include
>
>
> and then did the following:
>
> Download the zlib package:
> http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-1.2.6.tar
> Unpack the package (tar -xvf)
> cd zlib-1.2.6
> ./configure --prefix=$iprefix/ --enable-shared
> make; make install
>
> Download the HDF5 package:
> https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/
> hdf5-1.8.18/src/hdf5-1.8.18.tar.gz
> Unpack the package (tar -xvf)
> ./configure --prefix=$iprefix --with-zlib=$libdir LDFLAGS=-L$libdir
> CPPFLAGS=-I$incdir
> make
> make check
> make install
>
> Download the NetCDF C package:
> ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.zip
> Unpack the package (unzip)
> cd netcdf-4.4.1.1
> export FC=''
> export F90=''
> ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-I$incdir
> make; make install
>
> Download the NetCDF CXX package:
> https://www.gfd-dennou.org/arch/netcdf/unidata-mirror/
> netcdf-cxx4-4.3.0.tar.gz
> Unpack the package (tar -zxf)
> cd netcdf-cxx4-4.3.0
> ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-I$incdir
> make; make install
>
>
> Please give those a try and let me know how it works out.  Please
let me
> know if you have any questions about these instructions.
>
> Thanks,
> Julie
>
>
> On Thu, Apr 27, 2017 at 12:47 PM, Yating Zhang via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> >
> > Hi Julie,
> >
> > Thank you for your reply. I don't have the
*$MET_NETCDF/lib/libnetcdf.so*
> > and $MET_NETCDF/lib/libnetcdf_c++.*so*. I recompiled NetCDF C and
NetCDF
> > C++, but the two were still not generated.
> >
> > Thanks,
> >
> > Yating
> >
> > On Wed, Apr 26, 2017 at 4:52 PM, Julie Prestopnik via RT <
> > met_help at ucar.edu>
> > wrote:
> >
> > > Thank you, Yating.
> > >
> > > I'm sorry to hear that you are having problems with met-6.0.
> > >
> > > I see the following error in your make_test.log file:
> > >
> > > fatal error: netcdf: No such file or directory
> > >  #include <netcdf>
> > >
> > > It looks like MET is having a difficult time finding the file
"netcdf",
> > > which is included in the NetCDF-CXX installation.  I see in your
> > config.log
> > > that you have defined MET_NETCDF to be
> > > /Users/yating/Desktop/MET_LIB/netcdf_C.
> > >
> > > Here is a quick reference checklist for NetCDF4C++ installation
that
> you
> > > can use to see if you have the necessary files:
> > >
> > > Files for NetCDF4 C:
> > >
> > > $MET_NETCDF/include/netcdf.h
> > > $MET_NETCDF/lib/libnetcdf.a
> > > $MET_NETCDF/lib/libnetcdf.so
> > >
> > > Files for NetCDF4 C++:
> > >
> > > $MET_NETCDF/include/netcdf
> > > $MET_NETCDF/lib/libnetcdf_c++4.a
> > > $MET_NETCDF/lib/libnetcdf_c++4.so
> > >
> > > Files for NetCDF3 C++ (not required, if --disabled-netcdf4 is
> activated):
> > >
> > > $MET_NETCDF/include/netcdf.hh
> > > $MET_NETCDF/lib/libnetcdf_c++.a
> > > $MET_NETCDF/lib/libnetcdf_c++.so
> > >
> > > Please take a look and see if those files exist and let me know.
If
> they
> > > do exist, could you please also attach your make_install.log
file for
> me?
> > >
> > > Thanks!
> > >
> > > Julie
> > >
> > >
> > > On Wed, Apr 26, 2017 at 1:53 PM, Yating Zhang via RT <
> met_help at ucar.edu>
> > > wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272
>
> > > >
> > > > Hi Julie,
> > > >
> > > > I have completed the registration.
> > > >
> > > > Best,
> > > >
> > > > Yating
> > > >
> > > > On Wed, Apr 26, 2017 at 1:05 PM, Julie Prestopnik via RT <
> > > > met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > > I'd be happy to try to help you with this issue, but we can
only
> > > provide
> > > > > direct support to registered users of MET.  We do this to
ensure
> that
> > > we
> > > > > remain in compliance with U.S. export control laws.  You can
fill
> out
> > > the
> > > > > registration form here:
> > > > >    http://www.dtcenter.org/met/users/downloads/index.php
> > > > > Just enter your email address and hit enter.   That should
take you
> > to
> > > > the
> > > > > registration page.
> > > > >
> > > > > Please write me back once you've filled that out, and I
should be
> > able
> > > to
> > > > > offer more help.
> > > > >
> > > > > Thanks,
> > > > > Julie
> > > > >
> > > > > On Wed, Apr 26, 2017 at 10:51 AM, Yating Zhang via RT <
> > > met_help at ucar.edu
> > > > >
> > > > > wrote:
> > > > >
> > > > > >
> > > > > > Wed Apr 26 10:51:09 2017: Request 80272 was acted upon.
> > > > > > Transaction: Ticket created by zhyating at terpmail.umd.edu
> > > > > >        Queue: met_help
> > > > > >      Subject: MET 6.0 Compiling Issue
> > > > > >        Owner: Nobody
> > > > > >   Requestors: zhyating at terpmail.umd.edu
> > > > > >       Status: new
> > > > > >  Ticket <URL: https://rt.rap.ucar.edu/rt/Tic
> > > ket/Display.html?id=80272
> > > > >
> > > > > >
> > > > > >
> > > > > > Hi,
> > > > > >
> > > > > > I have troubles in compiling the MET 6.0
> (met-6.0_bugfix.20170419)
> > on
> > > > > macOS
> > > > > > Sierra. I have installed the libraries NetCDF C, NetCDF
C++,
> Zlib,
> > > > HDF5,
> > > > > > BUFRLIB following the online tutorial.
> > > > > > http://www.dtcenter.org/met/users/support/online_tutorial/
> > > > > > METv6.0/tutorial.php?name=compilation&category=req_libs
> > > > > >
> > > > > > I checked every library and they all passed the tests. I
can
> > install
> > > > MET
> > > > > > 6.0 share file without executable files generated. I
attached the
> > > > > documents
> > > > > > for make_test.log and config.log for your reference, as
well as
> the
> > > > code
> > > > > I
> > > > > > used to compile (GUI compiler).  The NetCDF C, NetCDF C++
are
> > > installed
> > > > > in
> > > > > > netcdf_C file.
> > > > > >
> > > > > > *export CC=gcc*
> > > > > >
> > > > > > *export CXX=g++*
> > > > > >
> > > > > > *export F77=gfortran*
> > > > > >
> > > > > > *export MET_NETCDF=/Users/yating/Desktop/MET_LIB/netcdf_C*
> > > > > >
> > > > > > *export MET_HDF5=/Users/yating/Desktop/MET_LIB/hdf5 *
> > > > > >
> > > > > > *export MET_BUFR=/Users/yating/Downloads/BUFRLIB_v10-2-3 *
> > > > > >
> > > > > > *export MET_GSL=/Users/yating/Desktop/MET_LIB/gsl *
> > > > > >
> > > > > > *./configure --prefix=/Users/yating/Desktop/MET_LIB/MET6*
> > > > > >
> > > > > >
> > > > > > I have cleaned and recompiled several times and removed
and
> > > downloaded
> > > > > the
> > > > > > MET file, but it still had the same errors. I will be
appreciated
> > if
> > > > you
> > > > > > can give me any help. Thank you for your time.
> > > > > >
> > > > > > Thanks,
> > > > > >
> > > > > > Yating
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>

------------------------------------------------
Subject: MET 6.0 Compiling Issue
From: Julie Prestopnik
Time: Mon May 01 09:27:09 2017

Hi Yating.  I'm sorry to see that you are still having problems
getting
met-6.0 installed.

>From your config.log file, it looks like there might be a problem at
the
configure step:

ld: warning: directory not found for option '-L${MET_NETCDF}/lib'
ld: warning: directory not found for option '-L${MET_HDF5}/lib'
ld: warning: directory not found for option '-L${MET_GSL}/lib'
ld: warning: directory not found for option '-L${MET_BUFR}/lib'
ld: can't map file, errno=22 file
'/Users/yating/Desktop/MET_LIB/netcdf_C/include' for architecture
x86_64
collect2: error: ld returned 1 exit status

Please take a look at this page of the online tutorial for met-6.0:

http://www.dtcenter.org/met/users/support/online_tutorial/METv6.0/tutorial.php?name=compilation&category=configure

and make sure that you have the environment variables set up correctly
for
your system.

Then, please run "make clean" and then run configure again, followed
by
"make install", and if that was successful, then please run "make
test".
You can continue on from that page in the tutorial to the following
pages
until you have met-6.0 installed successfully.

Please give that a try and let us know if you encounter any more
problems
or if you get a successful install.

Julie

On Sun, Apr 30, 2017 at 5:09 PM, Yating Zhang via RT
<met_help at ucar.edu>
wrote:

>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
>
> Hi Julie,
>
> Thank you for you reply. I think there is no problem with these
libraries.
> Could you share the code for compiling the MET6.0? Have you set any
path
> for the include file for netCDF? I have added the library path,
because I
> don't have the *.so files.
>
> I attached the two files for the config.log and make_install.log,
> respectively.
>
> Thanks,
>
> Yating
>
>
>
> On Thu, Apr 27, 2017 at 3:07 PM, Julie Prestopnik via RT <
> met_help at ucar.edu>
> wrote:
>
> > Hi Yating.
> >
> > I am sorry to hear that you are still having difficulty with the
netcdf
> > library files.   Perhaps it would help if I gave more detailed
> instructions
> > on how I compiled specific versions of the HDF5 (first, I
installed
> zlib),
> > NetCDF C, and NetCDF CXX packages (below).
> >
> > I set the following environment variables:
> >
> > export iprefix=/usrx/local/dev/met/met-6.0/external_libs
> > export libdir=/usrx/local/dev/met/met-6.0/external_libs/lib
> > export incdir=/usrx/local/dev/met/met-6.0/external_libs/include
> >
> >
> > and then did the following:
> >
> > Download the zlib package:
> > http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-1.2.6.tar
> > Unpack the package (tar -xvf)
> > cd zlib-1.2.6
> > ./configure --prefix=$iprefix/ --enable-shared
> > make; make install
> >
> > Download the HDF5 package:
> > https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/
> > hdf5-1.8.18/src/hdf5-1.8.18.tar.gz
> > Unpack the package (tar -xvf)
> > ./configure --prefix=$iprefix --with-zlib=$libdir LDFLAGS=-
L$libdir
> > CPPFLAGS=-I$incdir
> > make
> > make check
> > make install
> >
> > Download the NetCDF C package:
> > ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.zip
> > Unpack the package (unzip)
> > cd netcdf-4.4.1.1
> > export FC=''
> > export F90=''
> > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-I$incdir
> > make; make install
> >
> > Download the NetCDF CXX package:
> > https://www.gfd-dennou.org/arch/netcdf/unidata-mirror/
> > netcdf-cxx4-4.3.0.tar.gz
> > Unpack the package (tar -zxf)
> > cd netcdf-cxx4-4.3.0
> > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-I$incdir
> > make; make install
> >
> >
> > Please give those a try and let me know how it works out.  Please
let me
> > know if you have any questions about these instructions.
> >
> > Thanks,
> > Julie
> >
> >
> > On Thu, Apr 27, 2017 at 12:47 PM, Yating Zhang via RT
<met_help at ucar.edu
> >
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> > >
> > > Hi Julie,
> > >
> > > Thank you for your reply. I don't have the
> *$MET_NETCDF/lib/libnetcdf.so*
> > > and $MET_NETCDF/lib/libnetcdf_c++.*so*. I recompiled NetCDF C
and
> NetCDF
> > > C++, but the two were still not generated.
> > >
> > > Thanks,
> > >
> > > Yating
> > >
> > > On Wed, Apr 26, 2017 at 4:52 PM, Julie Prestopnik via RT <
> > > met_help at ucar.edu>
> > > wrote:
> > >
> > > > Thank you, Yating.
> > > >
> > > > I'm sorry to hear that you are having problems with met-6.0.
> > > >
> > > > I see the following error in your make_test.log file:
> > > >
> > > > fatal error: netcdf: No such file or directory
> > > >  #include <netcdf>
> > > >
> > > > It looks like MET is having a difficult time finding the file
> "netcdf",
> > > > which is included in the NetCDF-CXX installation.  I see in
your
> > > config.log
> > > > that you have defined MET_NETCDF to be
> > > > /Users/yating/Desktop/MET_LIB/netcdf_C.
> > > >
> > > > Here is a quick reference checklist for NetCDF4C++
installation that
> > you
> > > > can use to see if you have the necessary files:
> > > >
> > > > Files for NetCDF4 C:
> > > >
> > > > $MET_NETCDF/include/netcdf.h
> > > > $MET_NETCDF/lib/libnetcdf.a
> > > > $MET_NETCDF/lib/libnetcdf.so
> > > >
> > > > Files for NetCDF4 C++:
> > > >
> > > > $MET_NETCDF/include/netcdf
> > > > $MET_NETCDF/lib/libnetcdf_c++4.a
> > > > $MET_NETCDF/lib/libnetcdf_c++4.so
> > > >
> > > > Files for NetCDF3 C++ (not required, if --disabled-netcdf4 is
> > activated):
> > > >
> > > > $MET_NETCDF/include/netcdf.hh
> > > > $MET_NETCDF/lib/libnetcdf_c++.a
> > > > $MET_NETCDF/lib/libnetcdf_c++.so
> > > >
> > > > Please take a look and see if those files exist and let me
know.  If
> > they
> > > > do exist, could you please also attach your make_install.log
file for
> > me?
> > > >
> > > > Thanks!
> > > >
> > > > Julie
> > > >
> > > >
> > > > On Wed, Apr 26, 2017 at 1:53 PM, Yating Zhang via RT <
> > met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> > > > >
> > > > > Hi Julie,
> > > > >
> > > > > I have completed the registration.
> > > > >
> > > > > Best,
> > > > >
> > > > > Yating
> > > > >
> > > > > On Wed, Apr 26, 2017 at 1:05 PM, Julie Prestopnik via RT <
> > > > > met_help at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > > I'd be happy to try to help you with this issue, but we
can only
> > > > provide
> > > > > > direct support to registered users of MET.  We do this to
ensure
> > that
> > > > we
> > > > > > remain in compliance with U.S. export control laws.  You
can fill
> > out
> > > > the
> > > > > > registration form here:
> > > > > >    http://www.dtcenter.org/met/users/downloads/index.php
> > > > > > Just enter your email address and hit enter.   That should
take
> you
> > > to
> > > > > the
> > > > > > registration page.
> > > > > >
> > > > > > Please write me back once you've filled that out, and I
should be
> > > able
> > > > to
> > > > > > offer more help.
> > > > > >
> > > > > > Thanks,
> > > > > > Julie
> > > > > >
> > > > > > On Wed, Apr 26, 2017 at 10:51 AM, Yating Zhang via RT <
> > > > met_help at ucar.edu
> > > > > >
> > > > > > wrote:
> > > > > >
> > > > > > >
> > > > > > > Wed Apr 26 10:51:09 2017: Request 80272 was acted upon.
> > > > > > > Transaction: Ticket created by zhyating at terpmail.umd.edu
> > > > > > >        Queue: met_help
> > > > > > >      Subject: MET 6.0 Compiling Issue
> > > > > > >        Owner: Nobody
> > > > > > >   Requestors: zhyating at terpmail.umd.edu
> > > > > > >       Status: new
> > > > > > >  Ticket <URL: https://rt.rap.ucar.edu/rt/Tic
> > > > ket/Display.html?id=80272
> > > > > >
> > > > > > >
> > > > > > >
> > > > > > > Hi,
> > > > > > >
> > > > > > > I have troubles in compiling the MET 6.0
> > (met-6.0_bugfix.20170419)
> > > on
> > > > > > macOS
> > > > > > > Sierra. I have installed the libraries NetCDF C, NetCDF
C++,
> > Zlib,
> > > > > HDF5,
> > > > > > > BUFRLIB following the online tutorial.
> > > > > > >
http://www.dtcenter.org/met/users/support/online_tutorial/
> > > > > > > METv6.0/tutorial.php?name=compilation&category=req_libs
> > > > > > >
> > > > > > > I checked every library and they all passed the tests. I
can
> > > install
> > > > > MET
> > > > > > > 6.0 share file without executable files generated. I
attached
> the
> > > > > > documents
> > > > > > > for make_test.log and config.log for your reference, as
well as
> > the
> > > > > code
> > > > > > I
> > > > > > > used to compile (GUI compiler).  The NetCDF C, NetCDF
C++ are
> > > > installed
> > > > > > in
> > > > > > > netcdf_C file.
> > > > > > >
> > > > > > > *export CC=gcc*
> > > > > > >
> > > > > > > *export CXX=g++*
> > > > > > >
> > > > > > > *export F77=gfortran*
> > > > > > >
> > > > > > > *export
MET_NETCDF=/Users/yating/Desktop/MET_LIB/netcdf_C*
> > > > > > >
> > > > > > > *export MET_HDF5=/Users/yating/Desktop/MET_LIB/hdf5 *
> > > > > > >
> > > > > > > *export MET_BUFR=/Users/yating/Downloads/BUFRLIB_v10-2-3
*
> > > > > > >
> > > > > > > *export MET_GSL=/Users/yating/Desktop/MET_LIB/gsl *
> > > > > > >
> > > > > > > *./configure
--prefix=/Users/yating/Desktop/MET_LIB/MET6*
> > > > > > >
> > > > > > >
> > > > > > > I have cleaned and recompiled several times and removed
and
> > > > downloaded
> > > > > > the
> > > > > > > MET file, but it still had the same errors. I will be
> appreciated
> > > if
> > > > > you
> > > > > > > can give me any help. Thank you for your time.
> > > > > > >
> > > > > > > Thanks,
> > > > > > >
> > > > > > > Yating
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>

------------------------------------------------
Subject: MET 6.0 Compiling Issue
From: Yating Zhang
Time: Mon May 01 12:16:24 2017

Hi Julie,

I updated the config.log. The next problem may be associated with
environmental settings. I am searching answers from the Internet, but
if
you have any answers or suggestions, please let me know.

The code I used to configure the MET6.0 is as follows.

export CC=gcc
export CXX=g++
export F77=gfortran
export MET_NETCDFINC=/Users/yating/Desktop/MET_LIB/netcdf_C/include
export MET_NETCDFLIB=/Users/yating/Desktop/MET_LIB/netcdf_C/lib
export MET_HDF5INC=/Users/yating/Desktop/MET_LIB/hdf5/include
export MET_HDF5LIB=/Users/yating/Desktop/MET_LIB/hdf5/lib
export MET_BUFRLIB=/Users/yating/Downloads/BUFRLIB_v10-2-3
export MET_GSLINC=/Users/yating/Desktop/MET_LIB/gsl/include
export MET_GSLLIB=/Users/yating/Desktop/MET_LIB/gsl/lib
export
LD_LIBRARY_PATH=/Users/yating/Desktop/MET_LIB/netcdf_C/lib:/Users/yating/Desktop/MET_LIB/gsl/lib:${LD_LIBRARY_PATH}
CPPFLAGS=/Users/yating/Desktop/MET_LIB/netcdf_C/include ./configure
--prefix=/Users/yating/Desktop/MET_LIB/MET6

Thank you for all the helps,

Yating

On Mon, May 1, 2017 at 11:27 AM, Julie Prestopnik via RT
<met_help at ucar.edu>
wrote:

> Hi Yating.  I'm sorry to see that you are still having problems
getting
> met-6.0 installed.
>
> From your config.log file, it looks like there might be a problem at
the
> configure step:
>
> ld: warning: directory not found for option '-L${MET_NETCDF}/lib'
> ld: warning: directory not found for option '-L${MET_HDF5}/lib'
> ld: warning: directory not found for option '-L${MET_GSL}/lib'
> ld: warning: directory not found for option '-L${MET_BUFR}/lib'
> ld: can't map file, errno=22 file
> '/Users/yating/Desktop/MET_LIB/netcdf_C/include' for architecture
x86_64
> collect2: error: ld returned 1 exit status
>
> Please take a look at this page of the online tutorial for met-6.0:
>
> http://www.dtcenter.org/met/users/support/online_tutorial/
> METv6.0/tutorial.php?name=compilation&category=configure
>
> and make sure that you have the environment variables set up
correctly for
> your system.
>
> Then, please run "make clean" and then run configure again, followed
by
> "make install", and if that was successful, then please run "make
test".
> You can continue on from that page in the tutorial to the following
pages
> until you have met-6.0 installed successfully.
>
> Please give that a try and let us know if you encounter any more
problems
> or if you get a successful install.
>
> Julie
>
>
>
>
>
> On Sun, Apr 30, 2017 at 5:09 PM, Yating Zhang via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> >
> > Hi Julie,
> >
> > Thank you for you reply. I think there is no problem with these
> libraries.
> > Could you share the code for compiling the MET6.0? Have you set
any path
> > for the include file for netCDF? I have added the library path,
because I
> > don't have the *.so files.
> >
> > I attached the two files for the config.log and make_install.log,
> > respectively.
> >
> > Thanks,
> >
> > Yating
> >
> >
> >
> > On Thu, Apr 27, 2017 at 3:07 PM, Julie Prestopnik via RT <
> > met_help at ucar.edu>
> > wrote:
> >
> > > Hi Yating.
> > >
> > > I am sorry to hear that you are still having difficulty with the
netcdf
> > > library files.   Perhaps it would help if I gave more detailed
> > instructions
> > > on how I compiled specific versions of the HDF5 (first, I
installed
> > zlib),
> > > NetCDF C, and NetCDF CXX packages (below).
> > >
> > > I set the following environment variables:
> > >
> > > export iprefix=/usrx/local/dev/met/met-6.0/external_libs
> > > export libdir=/usrx/local/dev/met/met-6.0/external_libs/lib
> > > export incdir=/usrx/local/dev/met/met-6.0/external_libs/include
> > >
> > >
> > > and then did the following:
> > >
> > > Download the zlib package:
> > > http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-1.2.6.tar
> > > Unpack the package (tar -xvf)
> > > cd zlib-1.2.6
> > > ./configure --prefix=$iprefix/ --enable-shared
> > > make; make install
> > >
> > > Download the HDF5 package:
> > > https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/
> > > hdf5-1.8.18/src/hdf5-1.8.18.tar.gz
> > > Unpack the package (tar -xvf)
> > > ./configure --prefix=$iprefix --with-zlib=$libdir LDFLAGS=-
L$libdir
> > > CPPFLAGS=-I$incdir
> > > make
> > > make check
> > > make install
> > >
> > > Download the NetCDF C package:
> > > ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.zip
> > > Unpack the package (unzip)
> > > cd netcdf-4.4.1.1
> > > export FC=''
> > > export F90=''
> > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-
I$incdir
> > > make; make install
> > >
> > > Download the NetCDF CXX package:
> > > https://www.gfd-dennou.org/arch/netcdf/unidata-mirror/
> > > netcdf-cxx4-4.3.0.tar.gz
> > > Unpack the package (tar -zxf)
> > > cd netcdf-cxx4-4.3.0
> > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-
I$incdir
> > > make; make install
> > >
> > >
> > > Please give those a try and let me know how it works out.
Please let
> me
> > > know if you have any questions about these instructions.
> > >
> > > Thanks,
> > > Julie
> > >
> > >
> > > On Thu, Apr 27, 2017 at 12:47 PM, Yating Zhang via RT <
> met_help at ucar.edu
> > >
> > > wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272
>
> > > >
> > > > Hi Julie,
> > > >
> > > > Thank you for your reply. I don't have the
> > *$MET_NETCDF/lib/libnetcdf.so*
> > > > and $MET_NETCDF/lib/libnetcdf_c++.*so*. I recompiled NetCDF C
and
> > NetCDF
> > > > C++, but the two were still not generated.
> > > >
> > > > Thanks,
> > > >
> > > > Yating
> > > >
> > > > On Wed, Apr 26, 2017 at 4:52 PM, Julie Prestopnik via RT <
> > > > met_help at ucar.edu>
> > > > wrote:
> > > >
> > > > > Thank you, Yating.
> > > > >
> > > > > I'm sorry to hear that you are having problems with met-6.0.
> > > > >
> > > > > I see the following error in your make_test.log file:
> > > > >
> > > > > fatal error: netcdf: No such file or directory
> > > > >  #include <netcdf>
> > > > >
> > > > > It looks like MET is having a difficult time finding the
file
> > "netcdf",
> > > > > which is included in the NetCDF-CXX installation.  I see in
your
> > > > config.log
> > > > > that you have defined MET_NETCDF to be
> > > > > /Users/yating/Desktop/MET_LIB/netcdf_C.
> > > > >
> > > > > Here is a quick reference checklist for NetCDF4C++
installation
> that
> > > you
> > > > > can use to see if you have the necessary files:
> > > > >
> > > > > Files for NetCDF4 C:
> > > > >
> > > > > $MET_NETCDF/include/netcdf.h
> > > > > $MET_NETCDF/lib/libnetcdf.a
> > > > > $MET_NETCDF/lib/libnetcdf.so
> > > > >
> > > > > Files for NetCDF4 C++:
> > > > >
> > > > > $MET_NETCDF/include/netcdf
> > > > > $MET_NETCDF/lib/libnetcdf_c++4.a
> > > > > $MET_NETCDF/lib/libnetcdf_c++4.so
> > > > >
> > > > > Files for NetCDF3 C++ (not required, if --disabled-netcdf4
is
> > > activated):
> > > > >
> > > > > $MET_NETCDF/include/netcdf.hh
> > > > > $MET_NETCDF/lib/libnetcdf_c++.a
> > > > > $MET_NETCDF/lib/libnetcdf_c++.so
> > > > >
> > > > > Please take a look and see if those files exist and let me
know.
> If
> > > they
> > > > > do exist, could you please also attach your make_install.log
file
> for
> > > me?
> > > > >
> > > > > Thanks!
> > > > >
> > > > > Julie
> > > > >
> > > > >
> > > > > On Wed, Apr 26, 2017 at 1:53 PM, Yating Zhang via RT <
> > > met_help at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > >
> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> > > > > >
> > > > > > Hi Julie,
> > > > > >
> > > > > > I have completed the registration.
> > > > > >
> > > > > > Best,
> > > > > >
> > > > > > Yating
> > > > > >
> > > > > > On Wed, Apr 26, 2017 at 1:05 PM, Julie Prestopnik via RT <
> > > > > > met_help at ucar.edu>
> > > > > > wrote:
> > > > > >
> > > > > > > I'd be happy to try to help you with this issue, but we
can
> only
> > > > > provide
> > > > > > > direct support to registered users of MET.  We do this
to
> ensure
> > > that
> > > > > we
> > > > > > > remain in compliance with U.S. export control laws.  You
can
> fill
> > > out
> > > > > the
> > > > > > > registration form here:
> > > > > > >    http://www.dtcenter.org/met/users/downloads/index.php
> > > > > > > Just enter your email address and hit enter.   That
should take
> > you
> > > > to
> > > > > > the
> > > > > > > registration page.
> > > > > > >
> > > > > > > Please write me back once you've filled that out, and I
should
> be
> > > > able
> > > > > to
> > > > > > > offer more help.
> > > > > > >
> > > > > > > Thanks,
> > > > > > > Julie
> > > > > > >
> > > > > > > On Wed, Apr 26, 2017 at 10:51 AM, Yating Zhang via RT <
> > > > > met_help at ucar.edu
> > > > > > >
> > > > > > > wrote:
> > > > > > >
> > > > > > > >
> > > > > > > > Wed Apr 26 10:51:09 2017: Request 80272 was acted
upon.
> > > > > > > > Transaction: Ticket created by
zhyating at terpmail.umd.edu
> > > > > > > >        Queue: met_help
> > > > > > > >      Subject: MET 6.0 Compiling Issue
> > > > > > > >        Owner: Nobody
> > > > > > > >   Requestors: zhyating at terpmail.umd.edu
> > > > > > > >       Status: new
> > > > > > > >  Ticket <URL: https://rt.rap.ucar.edu/rt/Tic
> > > > > ket/Display.html?id=80272
> > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > Hi,
> > > > > > > >
> > > > > > > > I have troubles in compiling the MET 6.0
> > > (met-6.0_bugfix.20170419)
> > > > on
> > > > > > > macOS
> > > > > > > > Sierra. I have installed the libraries NetCDF C,
NetCDF C++,
> > > Zlib,
> > > > > > HDF5,
> > > > > > > > BUFRLIB following the online tutorial.
> > > > > > > >
http://www.dtcenter.org/met/users/support/online_tutorial/
> > > > > > > >
METv6.0/tutorial.php?name=compilation&category=req_libs
> > > > > > > >
> > > > > > > > I checked every library and they all passed the tests.
I can
> > > > install
> > > > > > MET
> > > > > > > > 6.0 share file without executable files generated. I
attached
> > the
> > > > > > > documents
> > > > > > > > for make_test.log and config.log for your reference,
as well
> as
> > > the
> > > > > > code
> > > > > > > I
> > > > > > > > used to compile (GUI compiler).  The NetCDF C, NetCDF
C++ are
> > > > > installed
> > > > > > > in
> > > > > > > > netcdf_C file.
> > > > > > > >
> > > > > > > > *export CC=gcc*
> > > > > > > >
> > > > > > > > *export CXX=g++*
> > > > > > > >
> > > > > > > > *export F77=gfortran*
> > > > > > > >
> > > > > > > > *export
MET_NETCDF=/Users/yating/Desktop/MET_LIB/netcdf_C*
> > > > > > > >
> > > > > > > > *export MET_HDF5=/Users/yating/Desktop/MET_LIB/hdf5 *
> > > > > > > >
> > > > > > > > *export MET_BUFR=/Users/yating/Downloads/BUFRLIB_v10-
2-3 *
> > > > > > > >
> > > > > > > > *export MET_GSL=/Users/yating/Desktop/MET_LIB/gsl *
> > > > > > > >
> > > > > > > > *./configure
--prefix=/Users/yating/Desktop/MET_LIB/MET6*
> > > > > > > >
> > > > > > > >
> > > > > > > > I have cleaned and recompiled several times and
removed and
> > > > > downloaded
> > > > > > > the
> > > > > > > > MET file, but it still had the same errors. I will be
> > appreciated
> > > > if
> > > > > > you
> > > > > > > > can give me any help. Thank you for your time.
> > > > > > > >
> > > > > > > > Thanks,
> > > > > > > >
> > > > > > > > Yating
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>

------------------------------------------------
Subject: MET 6.0 Compiling Issue
From: Yating Zhang
Time: Mon May 01 12:38:59 2017

Hi Julie,

I set theCPPFLAGS=/Users/yating/Desktop/MET_LIB/netcdf_C/*include *is
because the *make_test* is always unable to find the include file.
Without
this flag, I got a longer one as attached. The *make_install* and
*make_test* file are as before.

Thanks,

Yating

On Mon, May 1, 2017 at 2:15 PM, Yating Zhang
<zhyating at terpmail.umd.edu>
wrote:

> Hi Julie,
>
> I updated the config.log. The next problem may be associated with
> environmental settings. I am searching answers from the Internet,
but if
> you have any answers or suggestions, please let me know.
>
> The code I used to configure the MET6.0 is as follows.
>
> export CC=gcc
> export CXX=g++
> export F77=gfortran
> export MET_NETCDFINC=/Users/yating/Desktop/MET_LIB/netcdf_C/include
> export MET_NETCDFLIB=/Users/yating/Desktop/MET_LIB/netcdf_C/lib
> export MET_HDF5INC=/Users/yating/Desktop/MET_LIB/hdf5/include
> export MET_HDF5LIB=/Users/yating/Desktop/MET_LIB/hdf5/lib
> export MET_BUFRLIB=/Users/yating/Downloads/BUFRLIB_v10-2-3
> export MET_GSLINC=/Users/yating/Desktop/MET_LIB/gsl/include
> export MET_GSLLIB=/Users/yating/Desktop/MET_LIB/gsl/lib
> export LD_LIBRARY_PATH=/Users/yating/Desktop/MET_LIB/netcdf_C/lib:/
> Users/yating/Desktop/MET_LIB/gsl/lib:${LD_LIBRARY_PATH}
> CPPFLAGS=/Users/yating/Desktop/MET_LIB/netcdf_C/include ./configure
> --prefix=/Users/yating/Desktop/MET_LIB/MET6
>
>
> Thank you for all the helps,
>
> Yating
>
>
> On Mon, May 1, 2017 at 11:27 AM, Julie Prestopnik via RT <
> met_help at ucar.edu> wrote:
>
>> Hi Yating.  I'm sorry to see that you are still having problems
getting
>>
>> met-6.0 installed.
>>
>> From your config.log file, it looks like there might be a problem
at the
>> configure step:
>>
>> ld: warning: directory not found for option '-L${MET_NETCDF}/lib'
>> ld: warning: directory not found for option '-L${MET_HDF5}/lib'
>> ld: warning: directory not found for option '-L${MET_GSL}/lib'
>> ld: warning: directory not found for option '-L${MET_BUFR}/lib'
>> ld: can't map file, errno=22 file
>> '/Users/yating/Desktop/MET_LIB/netcdf_C/include' for architecture
x86_64
>> collect2: error: ld returned 1 exit status
>>
>> Please take a look at this page of the online tutorial for met-6.0:
>>
>> http://www.dtcenter.org/met/users/support/online_tutorial/ME
>> Tv6.0/tutorial.php?name=compilation&category=configure
>>
>> and make sure that you have the environment variables set up
correctly for
>> your system.
>>
>> Then, please run "make clean" and then run configure again,
followed by
>> "make install", and if that was successful, then please run "make
test".
>> You can continue on from that page in the tutorial to the following
pages
>> until you have met-6.0 installed successfully.
>>
>> Please give that a try and let us know if you encounter any more
problems
>> or if you get a successful install.
>>
>> Julie
>>
>>
>>
>>
>>
>> On Sun, Apr 30, 2017 at 5:09 PM, Yating Zhang via RT
<met_help at ucar.edu>
>> wrote:
>>
>> >
>> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
>> >
>> > Hi Julie,
>> >
>> > Thank you for you reply. I think there is no problem with these
>> libraries.
>> > Could you share the code for compiling the MET6.0? Have you set
any path
>> > for the include file for netCDF? I have added the library path,
because
>> I
>> > don't have the *.so files.
>> >
>> > I attached the two files for the config.log and make_install.log,
>> > respectively.
>> >
>> > Thanks,
>> >
>> > Yating
>> >
>> >
>> >
>> > On Thu, Apr 27, 2017 at 3:07 PM, Julie Prestopnik via RT <
>> > met_help at ucar.edu>
>> > wrote:
>> >
>> > > Hi Yating.
>> > >
>> > > I am sorry to hear that you are still having difficulty with
the
>> netcdf
>> > > library files.   Perhaps it would help if I gave more detailed
>> > instructions
>> > > on how I compiled specific versions of the HDF5 (first, I
installed
>> > zlib),
>> > > NetCDF C, and NetCDF CXX packages (below).
>> > >
>> > > I set the following environment variables:
>> > >
>> > > export iprefix=/usrx/local/dev/met/met-6.0/external_libs
>> > > export libdir=/usrx/local/dev/met/met-6.0/external_libs/lib
>> > > export incdir=/usrx/local/dev/met/met-6.0/external_libs/include
>> > >
>> > >
>> > > and then did the following:
>> > >
>> > > Download the zlib package:
>> > > http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-1.2.6.tar
>> > > Unpack the package (tar -xvf)
>> > > cd zlib-1.2.6
>> > > ./configure --prefix=$iprefix/ --enable-shared
>> > > make; make install
>> > >
>> > > Download the HDF5 package:
>> > > https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/
>> > > hdf5-1.8.18/src/hdf5-1.8.18.tar.gz
>> > > Unpack the package (tar -xvf)
>> > > ./configure --prefix=$iprefix --with-zlib=$libdir LDFLAGS=-
L$libdir
>> > > CPPFLAGS=-I$incdir
>> > > make
>> > > make check
>> > > make install
>> > >
>> > > Download the NetCDF C package:
>> > > ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.zip
>> > > Unpack the package (unzip)
>> > > cd netcdf-4.4.1.1
>> > > export FC=''
>> > > export F90=''
>> > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-
I$incdir
>> > > make; make install
>> > >
>> > > Download the NetCDF CXX package:
>> > > https://www.gfd-dennou.org/arch/netcdf/unidata-mirror/
>> > > netcdf-cxx4-4.3.0.tar.gz
>> > > Unpack the package (tar -zxf)
>> > > cd netcdf-cxx4-4.3.0
>> > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-
I$incdir
>> > > make; make install
>> > >
>> > >
>> > > Please give those a try and let me know how it works out.
Please let
>> me
>> > > know if you have any questions about these instructions.
>> > >
>> > > Thanks,
>> > > Julie
>> > >
>> > >
>> > > On Thu, Apr 27, 2017 at 12:47 PM, Yating Zhang via RT <
>> met_help at ucar.edu
>> > >
>> > > wrote:
>> > >
>> > > >
>> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272
>
>> > > >
>> > > > Hi Julie,
>> > > >
>> > > > Thank you for your reply. I don't have the
>> > *$MET_NETCDF/lib/libnetcdf.so*
>> > > > and $MET_NETCDF/lib/libnetcdf_c++.*so*. I recompiled NetCDF C
and
>> > NetCDF
>> > > > C++, but the two were still not generated.
>> > > >
>> > > > Thanks,
>> > > >
>> > > > Yating
>> > > >
>> > > > On Wed, Apr 26, 2017 at 4:52 PM, Julie Prestopnik via RT <
>> > > > met_help at ucar.edu>
>> > > > wrote:
>> > > >
>> > > > > Thank you, Yating.
>> > > > >
>> > > > > I'm sorry to hear that you are having problems with met-
6.0.
>> > > > >
>> > > > > I see the following error in your make_test.log file:
>> > > > >
>> > > > > fatal error: netcdf: No such file or directory
>> > > > >  #include <netcdf>
>> > > > >
>> > > > > It looks like MET is having a difficult time finding the
file
>> > "netcdf",
>> > > > > which is included in the NetCDF-CXX installation.  I see in
your
>> > > > config.log
>> > > > > that you have defined MET_NETCDF to be
>> > > > > /Users/yating/Desktop/MET_LIB/netcdf_C.
>> > > > >
>> > > > > Here is a quick reference checklist for NetCDF4C++
installation
>> that
>> > > you
>> > > > > can use to see if you have the necessary files:
>> > > > >
>> > > > > Files for NetCDF4 C:
>> > > > >
>> > > > > $MET_NETCDF/include/netcdf.h
>> > > > > $MET_NETCDF/lib/libnetcdf.a
>> > > > > $MET_NETCDF/lib/libnetcdf.so
>> > > > >
>> > > > > Files for NetCDF4 C++:
>> > > > >
>> > > > > $MET_NETCDF/include/netcdf
>> > > > > $MET_NETCDF/lib/libnetcdf_c++4.a
>> > > > > $MET_NETCDF/lib/libnetcdf_c++4.so
>> > > > >
>> > > > > Files for NetCDF3 C++ (not required, if --disabled-netcdf4
is
>> > > activated):
>> > > > >
>> > > > > $MET_NETCDF/include/netcdf.hh
>> > > > > $MET_NETCDF/lib/libnetcdf_c++.a
>> > > > > $MET_NETCDF/lib/libnetcdf_c++.so
>> > > > >
>> > > > > Please take a look and see if those files exist and let me
know.
>> If
>> > > they
>> > > > > do exist, could you please also attach your
make_install.log file
>> for
>> > > me?
>> > > > >
>> > > > > Thanks!
>> > > > >
>> > > > > Julie
>> > > > >
>> > > > >
>> > > > > On Wed, Apr 26, 2017 at 1:53 PM, Yating Zhang via RT <
>> > > met_help at ucar.edu>
>> > > > > wrote:
>> > > > >
>> > > > > >
>> > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
>> > > > > >
>> > > > > > Hi Julie,
>> > > > > >
>> > > > > > I have completed the registration.
>> > > > > >
>> > > > > > Best,
>> > > > > >
>> > > > > > Yating
>> > > > > >
>> > > > > > On Wed, Apr 26, 2017 at 1:05 PM, Julie Prestopnik via RT
<
>> > > > > > met_help at ucar.edu>
>> > > > > > wrote:
>> > > > > >
>> > > > > > > I'd be happy to try to help you with this issue, but we
can
>> only
>> > > > > provide
>> > > > > > > direct support to registered users of MET.  We do this
to
>> ensure
>> > > that
>> > > > > we
>> > > > > > > remain in compliance with U.S. export control laws.
You can
>> fill
>> > > out
>> > > > > the
>> > > > > > > registration form here:
>> > > > > > >
http://www.dtcenter.org/met/users/downloads/index.php
>> > > > > > > Just enter your email address and hit enter.   That
should
>> take
>> > you
>> > > > to
>> > > > > > the
>> > > > > > > registration page.
>> > > > > > >
>> > > > > > > Please write me back once you've filled that out, and I
>> should be
>> > > > able
>> > > > > to
>> > > > > > > offer more help.
>> > > > > > >
>> > > > > > > Thanks,
>> > > > > > > Julie
>> > > > > > >
>> > > > > > > On Wed, Apr 26, 2017 at 10:51 AM, Yating Zhang via RT <
>> > > > > met_help at ucar.edu
>> > > > > > >
>> > > > > > > wrote:
>> > > > > > >
>> > > > > > > >
>> > > > > > > > Wed Apr 26 10:51:09 2017: Request 80272 was acted
upon.
>> > > > > > > > Transaction: Ticket created by
zhyating at terpmail.umd.edu
>> > > > > > > >        Queue: met_help
>> > > > > > > >      Subject: MET 6.0 Compiling Issue
>> > > > > > > >        Owner: Nobody
>> > > > > > > >   Requestors: zhyating at terpmail.umd.edu
>> > > > > > > >       Status: new
>> > > > > > > >  Ticket <URL: https://rt.rap.ucar.edu/rt/Tic
>> > > > > ket/Display.html?id=80272
>> > > > > > >
>> > > > > > > >
>> > > > > > > >
>> > > > > > > > Hi,
>> > > > > > > >
>> > > > > > > > I have troubles in compiling the MET 6.0
>> > > (met-6.0_bugfix.20170419)
>> > > > on
>> > > > > > > macOS
>> > > > > > > > Sierra. I have installed the libraries NetCDF C,
NetCDF C++,
>> > > Zlib,
>> > > > > > HDF5,
>> > > > > > > > BUFRLIB following the online tutorial.
>> > > > > > > >
http://www.dtcenter.org/met/users/support/online_tutorial/
>> > > > > > > >
METv6.0/tutorial.php?name=compilation&category=req_libs
>> > > > > > > >
>> > > > > > > > I checked every library and they all passed the
tests. I can
>> > > > install
>> > > > > > MET
>> > > > > > > > 6.0 share file without executable files generated. I
>> attached
>> > the
>> > > > > > > documents
>> > > > > > > > for make_test.log and config.log for your reference,
as
>> well as
>> > > the
>> > > > > > code
>> > > > > > > I
>> > > > > > > > used to compile (GUI compiler).  The NetCDF C, NetCDF
C++
>> are
>> > > > > installed
>> > > > > > > in
>> > > > > > > > netcdf_C file.
>> > > > > > > >
>> > > > > > > > *export CC=gcc*
>> > > > > > > >
>> > > > > > > > *export CXX=g++*
>> > > > > > > >
>> > > > > > > > *export F77=gfortran*
>> > > > > > > >
>> > > > > > > > *export
MET_NETCDF=/Users/yating/Desktop/MET_LIB/netcdf_C*
>> > > > > > > >
>> > > > > > > > *export MET_HDF5=/Users/yating/Desktop/MET_LIB/hdf5 *
>> > > > > > > >
>> > > > > > > > *export MET_BUFR=/Users/yating/Downloads/BUFRLIB_v10-
2-3 *
>> > > > > > > >
>> > > > > > > > *export MET_GSL=/Users/yating/Desktop/MET_LIB/gsl *
>> > > > > > > >
>> > > > > > > > *./configure
--prefix=/Users/yating/Desktop/MET_LIB/MET6*
>> > > > > > > >
>> > > > > > > >
>> > > > > > > > I have cleaned and recompiled several times and
removed and
>> > > > > downloaded
>> > > > > > > the
>> > > > > > > > MET file, but it still had the same errors. I will be
>> > appreciated
>> > > > if
>> > > > > > you
>> > > > > > > > can give me any help. Thank you for your time.
>> > > > > > > >
>> > > > > > > > Thanks,
>> > > > > > > >
>> > > > > > > > Yating
>> > > > > > > >
>> > > > > > > >
>> > > > > > >
>> > > > > > >
>> > > > > >
>> > > > > >
>> > > > >
>> > > > >
>> > > >
>> > > >
>> > >
>> > >
>> >
>> >
>>
>>
>

------------------------------------------------
Subject: MET 6.0 Compiling Issue
From: Julie Prestopnik
Time: Mon May 01 12:39:41 2017

Hi Yating.

While I see that this line:

configure:4849: g++ -g /Users/yating/Desktop/MET_LIB/netcdf_C/include
-I${MET_NETCDF}/include -I${MET_HDF5}/include -I${MET_GSL}/include
-DBLOCK4
-DMET_BASE="\"$(pkgdatadir)\""  -L${MET_NETCDF}/lib -L${MET_HDF5}/lib
-L${MET_GSL}/lib -L${MET_BUFR}/lib conftest.cpp  >&5

changed to:

configure:4849: g++ -g /Users/yating/Desktop/MET_LIB/netcdf_C/include
-I/Users/yating/Desktop/MET_LIB/netcdf_C/include
-I/Users/yating/Desktop/MET_LIB/hdf5/include
-I/Users/yating/Desktop/MET_LIB/gsl/include -DBLOCK4
-DMET_BASE="\"$(pkgdatadir)\""
-L/Users/yating/Desktop/MET_LIB/netcdf_C/lib
-L/Users/yating/Desktop/MET_LIB/hdf5/lib
-L/Users/yating/Desktop/MET_LIB/gsl/lib
-L/Users/yating/Downloads/BUFRLIB_v10-2-3 conftest.cpp  >&5

and these warnings went away:

ld: warning: directory not found for option '-L${MET_NETCDF}/lib'
ld: warning: directory not found for option '-L${MET_HDF5}/lib'
ld: warning: directory not found for option '-L${MET_GSL}/lib'
ld: warning: directory not found for option '-L${MET_BUFR}/lib'

but this problem still exists:

ld: can't map file, errno=22 file
'/Users/yating/Desktop/MET_LIB/netcdf_C/include' for architecture
x86_64

It looks like "/Users/yating/Desktop/MET_LIB/netcdf_C/include" is
missing
the "-I" before it.  I see that it is listed twice, once with the "-I"
and
once without:

configure:4849: g++ -g /Users/yating/Desktop/MET_LIB/netcdf_C/include
-I/Users/yating/Desktop/MET_LIB/netcdf_C/include  ...

I think we need to get rid of that first one, without the "-I".
Perhaps
you can check your environment variable CPPFLAGS  by running "echo
$CPPFLAGS" and reset it so that it only has that directory listed
once,
with the "-I".

Please try fixing up your CPPFLAGS environment variable.  Then, please
run
"make clean" and then run configure again, followed by "make install",
and
if that was successful, then please run "make test".   Please let us
know
if you encounter any more problems or if you get a successful install.

Thanks!

Julie

On Mon, May 1, 2017 at 12:16 PM, Yating Zhang via RT
<met_help at ucar.edu>
wrote:

>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
>
> Hi Julie,
>
> I updated the config.log. The next problem may be associated with
> environmental settings. I am searching answers from the Internet,
but if
> you have any answers or suggestions, please let me know.
>
> The code I used to configure the MET6.0 is as follows.
>
> export CC=gcc
> export CXX=g++
> export F77=gfortran
> export MET_NETCDFINC=/Users/yating/Desktop/MET_LIB/netcdf_C/include
> export MET_NETCDFLIB=/Users/yating/Desktop/MET_LIB/netcdf_C/lib
> export MET_HDF5INC=/Users/yating/Desktop/MET_LIB/hdf5/include
> export MET_HDF5LIB=/Users/yating/Desktop/MET_LIB/hdf5/lib
> export MET_BUFRLIB=/Users/yating/Downloads/BUFRLIB_v10-2-3
> export MET_GSLINC=/Users/yating/Desktop/MET_LIB/gsl/include
> export MET_GSLLIB=/Users/yating/Desktop/MET_LIB/gsl/lib
> export
> LD_LIBRARY_PATH=/Users/yating/Desktop/MET_LIB/netcdf_C/lib:/
> Users/yating/Desktop/MET_LIB/gsl/lib:${LD_LIBRARY_PATH}
> CPPFLAGS=/Users/yating/Desktop/MET_LIB/netcdf_C/include ./configure
> --prefix=/Users/yating/Desktop/MET_LIB/MET6
>
>
> Thank you for all the helps,
>
> Yating
>
>
> On Mon, May 1, 2017 at 11:27 AM, Julie Prestopnik via RT <
> met_help at ucar.edu>
> wrote:
>
> > Hi Yating.  I'm sorry to see that you are still having problems
getting
> > met-6.0 installed.
> >
> > From your config.log file, it looks like there might be a problem
at the
> > configure step:
> >
> > ld: warning: directory not found for option '-L${MET_NETCDF}/lib'
> > ld: warning: directory not found for option '-L${MET_HDF5}/lib'
> > ld: warning: directory not found for option '-L${MET_GSL}/lib'
> > ld: warning: directory not found for option '-L${MET_BUFR}/lib'
> > ld: can't map file, errno=22 file
> > '/Users/yating/Desktop/MET_LIB/netcdf_C/include' for architecture
x86_64
> > collect2: error: ld returned 1 exit status
> >
> > Please take a look at this page of the online tutorial for met-
6.0:
> >
> > http://www.dtcenter.org/met/users/support/online_tutorial/
> > METv6.0/tutorial.php?name=compilation&category=configure
> >
> > and make sure that you have the environment variables set up
correctly
> for
> > your system.
> >
> > Then, please run "make clean" and then run configure again,
followed by
> > "make install", and if that was successful, then please run "make
test".
> > You can continue on from that page in the tutorial to the
following pages
> > until you have met-6.0 installed successfully.
> >
> > Please give that a try and let us know if you encounter any more
problems
> > or if you get a successful install.
> >
> > Julie
> >
> >
> >
> >
> >
> > On Sun, Apr 30, 2017 at 5:09 PM, Yating Zhang via RT
<met_help at ucar.edu>
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> > >
> > > Hi Julie,
> > >
> > > Thank you for you reply. I think there is no problem with these
> > libraries.
> > > Could you share the code for compiling the MET6.0? Have you set
any
> path
> > > for the include file for netCDF? I have added the library path,
> because I
> > > don't have the *.so files.
> > >
> > > I attached the two files for the config.log and
make_install.log,
> > > respectively.
> > >
> > > Thanks,
> > >
> > > Yating
> > >
> > >
> > >
> > > On Thu, Apr 27, 2017 at 3:07 PM, Julie Prestopnik via RT <
> > > met_help at ucar.edu>
> > > wrote:
> > >
> > > > Hi Yating.
> > > >
> > > > I am sorry to hear that you are still having difficulty with
the
> netcdf
> > > > library files.   Perhaps it would help if I gave more detailed
> > > instructions
> > > > on how I compiled specific versions of the HDF5 (first, I
installed
> > > zlib),
> > > > NetCDF C, and NetCDF CXX packages (below).
> > > >
> > > > I set the following environment variables:
> > > >
> > > > export iprefix=/usrx/local/dev/met/met-6.0/external_libs
> > > > export libdir=/usrx/local/dev/met/met-6.0/external_libs/lib
> > > > export incdir=/usrx/local/dev/met/met-
6.0/external_libs/include
> > > >
> > > >
> > > > and then did the following:
> > > >
> > > > Download the zlib package:
> > > > http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-1.2.6.tar
> > > > Unpack the package (tar -xvf)
> > > > cd zlib-1.2.6
> > > > ./configure --prefix=$iprefix/ --enable-shared
> > > > make; make install
> > > >
> > > > Download the HDF5 package:
> > > > https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/
> > > > hdf5-1.8.18/src/hdf5-1.8.18.tar.gz
> > > > Unpack the package (tar -xvf)
> > > > ./configure --prefix=$iprefix --with-zlib=$libdir LDFLAGS=-
L$libdir
> > > > CPPFLAGS=-I$incdir
> > > > make
> > > > make check
> > > > make install
> > > >
> > > > Download the NetCDF C package:
> > > > ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.zip
> > > > Unpack the package (unzip)
> > > > cd netcdf-4.4.1.1
> > > > export FC=''
> > > > export F90=''
> > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-
I$incdir
> > > > make; make install
> > > >
> > > > Download the NetCDF CXX package:
> > > > https://www.gfd-dennou.org/arch/netcdf/unidata-mirror/
> > > > netcdf-cxx4-4.3.0.tar.gz
> > > > Unpack the package (tar -zxf)
> > > > cd netcdf-cxx4-4.3.0
> > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-
I$incdir
> > > > make; make install
> > > >
> > > >
> > > > Please give those a try and let me know how it works out.
Please let
> > me
> > > > know if you have any questions about these instructions.
> > > >
> > > > Thanks,
> > > > Julie
> > > >
> > > >
> > > > On Thu, Apr 27, 2017 at 12:47 PM, Yating Zhang via RT <
> > met_help at ucar.edu
> > > >
> > > > wrote:
> > > >
> > > > >
> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> > > > >
> > > > > Hi Julie,
> > > > >
> > > > > Thank you for your reply. I don't have the
> > > *$MET_NETCDF/lib/libnetcdf.so*
> > > > > and $MET_NETCDF/lib/libnetcdf_c++.*so*. I recompiled NetCDF
C and
> > > NetCDF
> > > > > C++, but the two were still not generated.
> > > > >
> > > > > Thanks,
> > > > >
> > > > > Yating
> > > > >
> > > > > On Wed, Apr 26, 2017 at 4:52 PM, Julie Prestopnik via RT <
> > > > > met_help at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > > Thank you, Yating.
> > > > > >
> > > > > > I'm sorry to hear that you are having problems with met-
6.0.
> > > > > >
> > > > > > I see the following error in your make_test.log file:
> > > > > >
> > > > > > fatal error: netcdf: No such file or directory
> > > > > >  #include <netcdf>
> > > > > >
> > > > > > It looks like MET is having a difficult time finding the
file
> > > "netcdf",
> > > > > > which is included in the NetCDF-CXX installation.  I see
in your
> > > > > config.log
> > > > > > that you have defined MET_NETCDF to be
> > > > > > /Users/yating/Desktop/MET_LIB/netcdf_C.
> > > > > >
> > > > > > Here is a quick reference checklist for NetCDF4C++
installation
> > that
> > > > you
> > > > > > can use to see if you have the necessary files:
> > > > > >
> > > > > > Files for NetCDF4 C:
> > > > > >
> > > > > > $MET_NETCDF/include/netcdf.h
> > > > > > $MET_NETCDF/lib/libnetcdf.a
> > > > > > $MET_NETCDF/lib/libnetcdf.so
> > > > > >
> > > > > > Files for NetCDF4 C++:
> > > > > >
> > > > > > $MET_NETCDF/include/netcdf
> > > > > > $MET_NETCDF/lib/libnetcdf_c++4.a
> > > > > > $MET_NETCDF/lib/libnetcdf_c++4.so
> > > > > >
> > > > > > Files for NetCDF3 C++ (not required, if --disabled-netcdf4
is
> > > > activated):
> > > > > >
> > > > > > $MET_NETCDF/include/netcdf.hh
> > > > > > $MET_NETCDF/lib/libnetcdf_c++.a
> > > > > > $MET_NETCDF/lib/libnetcdf_c++.so
> > > > > >
> > > > > > Please take a look and see if those files exist and let me
know.
> > If
> > > > they
> > > > > > do exist, could you please also attach your
make_install.log file
> > for
> > > > me?
> > > > > >
> > > > > > Thanks!
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > >
> > > > > > On Wed, Apr 26, 2017 at 1:53 PM, Yating Zhang via RT <
> > > > met_help at ucar.edu>
> > > > > > wrote:
> > > > > >
> > > > > > >
> > > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272
> >
> > > > > > >
> > > > > > > Hi Julie,
> > > > > > >
> > > > > > > I have completed the registration.
> > > > > > >
> > > > > > > Best,
> > > > > > >
> > > > > > > Yating
> > > > > > >
> > > > > > > On Wed, Apr 26, 2017 at 1:05 PM, Julie Prestopnik via RT
<
> > > > > > > met_help at ucar.edu>
> > > > > > > wrote:
> > > > > > >
> > > > > > > > I'd be happy to try to help you with this issue, but
we can
> > only
> > > > > > provide
> > > > > > > > direct support to registered users of MET.  We do this
to
> > ensure
> > > > that
> > > > > > we
> > > > > > > > remain in compliance with U.S. export control laws.
You can
> > fill
> > > > out
> > > > > > the
> > > > > > > > registration form here:
> > > > > > > >
http://www.dtcenter.org/met/users/downloads/index.php
> > > > > > > > Just enter your email address and hit enter.   That
should
> take
> > > you
> > > > > to
> > > > > > > the
> > > > > > > > registration page.
> > > > > > > >
> > > > > > > > Please write me back once you've filled that out, and
I
> should
> > be
> > > > > able
> > > > > > to
> > > > > > > > offer more help.
> > > > > > > >
> > > > > > > > Thanks,
> > > > > > > > Julie
> > > > > > > >
> > > > > > > > On Wed, Apr 26, 2017 at 10:51 AM, Yating Zhang via RT
<
> > > > > > met_help at ucar.edu
> > > > > > > >
> > > > > > > > wrote:
> > > > > > > >
> > > > > > > > >
> > > > > > > > > Wed Apr 26 10:51:09 2017: Request 80272 was acted
upon.
> > > > > > > > > Transaction: Ticket created by
zhyating at terpmail.umd.edu
> > > > > > > > >        Queue: met_help
> > > > > > > > >      Subject: MET 6.0 Compiling Issue
> > > > > > > > >        Owner: Nobody
> > > > > > > > >   Requestors: zhyating at terpmail.umd.edu
> > > > > > > > >       Status: new
> > > > > > > > >  Ticket <URL: https://rt.rap.ucar.edu/rt/Tic
> > > > > > ket/Display.html?id=80272
> > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > Hi,
> > > > > > > > >
> > > > > > > > > I have troubles in compiling the MET 6.0
> > > > (met-6.0_bugfix.20170419)
> > > > > on
> > > > > > > > macOS
> > > > > > > > > Sierra. I have installed the libraries NetCDF C,
NetCDF
> C++,
> > > > Zlib,
> > > > > > > HDF5,
> > > > > > > > > BUFRLIB following the online tutorial.
> > > > > > > > >
http://www.dtcenter.org/met/users/support/online_tutorial/
> > > > > > > > >
METv6.0/tutorial.php?name=compilation&category=req_libs
> > > > > > > > >
> > > > > > > > > I checked every library and they all passed the
tests. I
> can
> > > > > install
> > > > > > > MET
> > > > > > > > > 6.0 share file without executable files generated. I
> attached
> > > the
> > > > > > > > documents
> > > > > > > > > for make_test.log and config.log for your reference,
as
> well
> > as
> > > > the
> > > > > > > code
> > > > > > > > I
> > > > > > > > > used to compile (GUI compiler).  The NetCDF C,
NetCDF C++
> are
> > > > > > installed
> > > > > > > > in
> > > > > > > > > netcdf_C file.
> > > > > > > > >
> > > > > > > > > *export CC=gcc*
> > > > > > > > >
> > > > > > > > > *export CXX=g++*
> > > > > > > > >
> > > > > > > > > *export F77=gfortran*
> > > > > > > > >
> > > > > > > > > *export
MET_NETCDF=/Users/yating/Desktop/MET_LIB/netcdf_C*
> > > > > > > > >
> > > > > > > > > *export MET_HDF5=/Users/yating/Desktop/MET_LIB/hdf5
*
> > > > > > > > >
> > > > > > > > > *export
MET_BUFR=/Users/yating/Downloads/BUFRLIB_v10-2-3 *
> > > > > > > > >
> > > > > > > > > *export MET_GSL=/Users/yating/Desktop/MET_LIB/gsl *
> > > > > > > > >
> > > > > > > > > *./configure
--prefix=/Users/yating/Desktop/MET_LIB/MET6*
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > I have cleaned and recompiled several times and
removed and
> > > > > > downloaded
> > > > > > > > the
> > > > > > > > > MET file, but it still had the same errors. I will
be
> > > appreciated
> > > > > if
> > > > > > > you
> > > > > > > > > can give me any help. Thank you for your time.
> > > > > > > > >
> > > > > > > > > Thanks,
> > > > > > > > >
> > > > > > > > > Yating
> > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > > >
> > > > > >
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>

------------------------------------------------
Subject: MET 6.0 Compiling Issue
From: Julie Prestopnik
Time: Mon May 15 09:38:18 2017

Hi.  I just wanted to follow up.  Were able to get MET successfully
installed?

Julie

On Mon, May 1, 2017 at 12:39 PM, Julie Prestopnik <jpresto at ucar.edu>
wrote:

> Hi Yating.
>
> While I see that this line:
>
> configure:4849: g++ -g
/Users/yating/Desktop/MET_LIB/netcdf_C/include
> -I${MET_NETCDF}/include -I${MET_HDF5}/include -I${MET_GSL}/include
-DBLOCK4
> -DMET_BASE="\"$(pkgdatadir)\""  -L${MET_NETCDF}/lib
-L${MET_HDF5}/lib
> -L${MET_GSL}/lib -L${MET_BUFR}/lib conftest.cpp  >&5
>
> changed to:
>
> configure:4849: g++ -g
/Users/yating/Desktop/MET_LIB/netcdf_C/include
> -I/Users/yating/Desktop/MET_LIB/netcdf_C/include
> -I/Users/yating/Desktop/MET_LIB/hdf5/include
-I/Users/yating/Desktop/MET_LIB/gsl/include
> -DBLOCK4 -DMET_BASE="\"$(pkgdatadir)\""
-L/Users/yating/Desktop/MET_LIB/netcdf_C/lib
> -L/Users/yating/Desktop/MET_LIB/hdf5/lib
-L/Users/yating/Desktop/MET_LIB/gsl/lib
> -L/Users/yating/Downloads/BUFRLIB_v10-2-3 conftest.cpp  >&5
>
> and these warnings went away:
>
> ld: warning: directory not found for option '-L${MET_NETCDF}/lib'
> ld: warning: directory not found for option '-L${MET_HDF5}/lib'
> ld: warning: directory not found for option '-L${MET_GSL}/lib'
> ld: warning: directory not found for option '-L${MET_BUFR}/lib'
>
> but this problem still exists:
>
> ld: can't map file, errno=22 file
'/Users/yating/Desktop/MET_LIB/netcdf_C/include'
> for architecture x86_64
>
> It looks like "/Users/yating/Desktop/MET_LIB/netcdf_C/include" is
missing
> the "-I" before it.  I see that it is listed twice, once with the "-
I" and
> once without:
>
> configure:4849: g++ -g
/Users/yating/Desktop/MET_LIB/netcdf_C/include
> -I/Users/yating/Desktop/MET_LIB/netcdf_C/include  ...
>
> I think we need to get rid of that first one, without the "-I".
Perhaps
> you can check your environment variable CPPFLAGS  by running "echo
> $CPPFLAGS" and reset it so that it only has that directory listed
once,
> with the "-I".
>
> Please try fixing up your CPPFLAGS environment variable.  Then,
please run
> "make clean" and then run configure again, followed by "make
install", and
> if that was successful, then please run "make test".   Please let us
know
> if you encounter any more problems or if you get a successful
install.
>
>
> Thanks!
>
> Julie
>
>
> On Mon, May 1, 2017 at 12:16 PM, Yating Zhang via RT
<met_help at ucar.edu>
> wrote:
>
>>
>> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
>>
>> Hi Julie,
>>
>> I updated the config.log. The next problem may be associated with
>> environmental settings. I am searching answers from the Internet,
but if
>> you have any answers or suggestions, please let me know.
>>
>> The code I used to configure the MET6.0 is as follows.
>>
>> export CC=gcc
>> export CXX=g++
>> export F77=gfortran
>> export MET_NETCDFINC=/Users/yating/Desktop/MET_LIB/netcdf_C/include
>> export MET_NETCDFLIB=/Users/yating/Desktop/MET_LIB/netcdf_C/lib
>> export MET_HDF5INC=/Users/yating/Desktop/MET_LIB/hdf5/include
>> export MET_HDF5LIB=/Users/yating/Desktop/MET_LIB/hdf5/lib
>> export MET_BUFRLIB=/Users/yating/Downloads/BUFRLIB_v10-2-3
>> export MET_GSLINC=/Users/yating/Desktop/MET_LIB/gsl/include
>> export MET_GSLLIB=/Users/yating/Desktop/MET_LIB/gsl/lib
>> export
>> LD_LIBRARY_PATH=/Users/yating/Desktop/MET_LIB/netcdf_C/lib:/
>> Users/yating/Desktop/MET_LIB/gsl/lib:${LD_LIBRARY_PATH}
>> CPPFLAGS=/Users/yating/Desktop/MET_LIB/netcdf_C/include ./configure
>> --prefix=/Users/yating/Desktop/MET_LIB/MET6
>>
>>
>> Thank you for all the helps,
>>
>> Yating
>>
>>
>> On Mon, May 1, 2017 at 11:27 AM, Julie Prestopnik via RT <
>> met_help at ucar.edu>
>> wrote:
>>
>> > Hi Yating.  I'm sorry to see that you are still having problems
getting
>> > met-6.0 installed.
>> >
>> > From your config.log file, it looks like there might be a problem
at the
>> > configure step:
>> >
>> > ld: warning: directory not found for option '-L${MET_NETCDF}/lib'
>> > ld: warning: directory not found for option '-L${MET_HDF5}/lib'
>> > ld: warning: directory not found for option '-L${MET_GSL}/lib'
>> > ld: warning: directory not found for option '-L${MET_BUFR}/lib'
>> > ld: can't map file, errno=22 file
>> > '/Users/yating/Desktop/MET_LIB/netcdf_C/include' for architecture
>> x86_64
>> > collect2: error: ld returned 1 exit status
>> >
>> > Please take a look at this page of the online tutorial for met-
6.0:
>> >
>> > http://www.dtcenter.org/met/users/support/online_tutorial/
>> > METv6.0/tutorial.php?name=compilation&category=configure
>> >
>> > and make sure that you have the environment variables set up
correctly
>> for
>> > your system.
>> >
>> > Then, please run "make clean" and then run configure again,
followed by
>> > "make install", and if that was successful, then please run "make
test".
>> > You can continue on from that page in the tutorial to the
following
>> pages
>> > until you have met-6.0 installed successfully.
>> >
>> > Please give that a try and let us know if you encounter any more
>> problems
>> > or if you get a successful install.
>> >
>> > Julie
>> >
>> >
>> >
>> >
>> >
>> > On Sun, Apr 30, 2017 at 5:09 PM, Yating Zhang via RT
<met_help at ucar.edu
>> >
>> > wrote:
>> >
>> > >
>> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
>> > >
>> > > Hi Julie,
>> > >
>> > > Thank you for you reply. I think there is no problem with these
>> > libraries.
>> > > Could you share the code for compiling the MET6.0? Have you set
any
>> path
>> > > for the include file for netCDF? I have added the library path,
>> because I
>> > > don't have the *.so files.
>> > >
>> > > I attached the two files for the config.log and
make_install.log,
>> > > respectively.
>> > >
>> > > Thanks,
>> > >
>> > > Yating
>> > >
>> > >
>> > >
>> > > On Thu, Apr 27, 2017 at 3:07 PM, Julie Prestopnik via RT <
>> > > met_help at ucar.edu>
>> > > wrote:
>> > >
>> > > > Hi Yating.
>> > > >
>> > > > I am sorry to hear that you are still having difficulty with
the
>> netcdf
>> > > > library files.   Perhaps it would help if I gave more
detailed
>> > > instructions
>> > > > on how I compiled specific versions of the HDF5 (first, I
installed
>> > > zlib),
>> > > > NetCDF C, and NetCDF CXX packages (below).
>> > > >
>> > > > I set the following environment variables:
>> > > >
>> > > > export iprefix=/usrx/local/dev/met/met-6.0/external_libs
>> > > > export libdir=/usrx/local/dev/met/met-6.0/external_libs/lib
>> > > > export incdir=/usrx/local/dev/met/met-
6.0/external_libs/include
>> > > >
>> > > >
>> > > > and then did the following:
>> > > >
>> > > > Download the zlib package:
>> > > > http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-1.2.6.tar
>> > > > Unpack the package (tar -xvf)
>> > > > cd zlib-1.2.6
>> > > > ./configure --prefix=$iprefix/ --enable-shared
>> > > > make; make install
>> > > >
>> > > > Download the HDF5 package:
>> > > > https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/
>> > > > hdf5-1.8.18/src/hdf5-1.8.18.tar.gz
>> > > > Unpack the package (tar -xvf)
>> > > > ./configure --prefix=$iprefix --with-zlib=$libdir LDFLAGS=-
L$libdir
>> > > > CPPFLAGS=-I$incdir
>> > > > make
>> > > > make check
>> > > > make install
>> > > >
>> > > > Download the NetCDF C package:
>> > > > ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.zip
>> > > > Unpack the package (unzip)
>> > > > cd netcdf-4.4.1.1
>> > > > export FC=''
>> > > > export F90=''
>> > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-
I$incdir
>> > > > make; make install
>> > > >
>> > > > Download the NetCDF CXX package:
>> > > > https://www.gfd-dennou.org/arch/netcdf/unidata-mirror/
>> > > > netcdf-cxx4-4.3.0.tar.gz
>> > > > Unpack the package (tar -zxf)
>> > > > cd netcdf-cxx4-4.3.0
>> > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-
I$incdir
>> > > > make; make install
>> > > >
>> > > >
>> > > > Please give those a try and let me know how it works out.
Please
>> let
>> > me
>> > > > know if you have any questions about these instructions.
>> > > >
>> > > > Thanks,
>> > > > Julie
>> > > >
>> > > >
>> > > > On Thu, Apr 27, 2017 at 12:47 PM, Yating Zhang via RT <
>> > met_help at ucar.edu
>> > > >
>> > > > wrote:
>> > > >
>> > > > >
>> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
>> > > > >
>> > > > > Hi Julie,
>> > > > >
>> > > > > Thank you for your reply. I don't have the
>> > > *$MET_NETCDF/lib/libnetcdf.so*
>> > > > > and $MET_NETCDF/lib/libnetcdf_c++.*so*. I recompiled NetCDF
C and
>> > > NetCDF
>> > > > > C++, but the two were still not generated.
>> > > > >
>> > > > > Thanks,
>> > > > >
>> > > > > Yating
>> > > > >
>> > > > > On Wed, Apr 26, 2017 at 4:52 PM, Julie Prestopnik via RT <
>> > > > > met_help at ucar.edu>
>> > > > > wrote:
>> > > > >
>> > > > > > Thank you, Yating.
>> > > > > >
>> > > > > > I'm sorry to hear that you are having problems with met-
6.0.
>> > > > > >
>> > > > > > I see the following error in your make_test.log file:
>> > > > > >
>> > > > > > fatal error: netcdf: No such file or directory
>> > > > > >  #include <netcdf>
>> > > > > >
>> > > > > > It looks like MET is having a difficult time finding the
file
>> > > "netcdf",
>> > > > > > which is included in the NetCDF-CXX installation.  I see
in your
>> > > > > config.log
>> > > > > > that you have defined MET_NETCDF to be
>> > > > > > /Users/yating/Desktop/MET_LIB/netcdf_C.
>> > > > > >
>> > > > > > Here is a quick reference checklist for NetCDF4C++
installation
>> > that
>> > > > you
>> > > > > > can use to see if you have the necessary files:
>> > > > > >
>> > > > > > Files for NetCDF4 C:
>> > > > > >
>> > > > > > $MET_NETCDF/include/netcdf.h
>> > > > > > $MET_NETCDF/lib/libnetcdf.a
>> > > > > > $MET_NETCDF/lib/libnetcdf.so
>> > > > > >
>> > > > > > Files for NetCDF4 C++:
>> > > > > >
>> > > > > > $MET_NETCDF/include/netcdf
>> > > > > > $MET_NETCDF/lib/libnetcdf_c++4.a
>> > > > > > $MET_NETCDF/lib/libnetcdf_c++4.so
>> > > > > >
>> > > > > > Files for NetCDF3 C++ (not required, if --disabled-
netcdf4 is
>> > > > activated):
>> > > > > >
>> > > > > > $MET_NETCDF/include/netcdf.hh
>> > > > > > $MET_NETCDF/lib/libnetcdf_c++.a
>> > > > > > $MET_NETCDF/lib/libnetcdf_c++.so
>> > > > > >
>> > > > > > Please take a look and see if those files exist and let
me know.
>> > If
>> > > > they
>> > > > > > do exist, could you please also attach your
make_install.log
>> file
>> > for
>> > > > me?
>> > > > > >
>> > > > > > Thanks!
>> > > > > >
>> > > > > > Julie
>> > > > > >
>> > > > > >
>> > > > > > On Wed, Apr 26, 2017 at 1:53 PM, Yating Zhang via RT <
>> > > > met_help at ucar.edu>
>> > > > > > wrote:
>> > > > > >
>> > > > > > >
>> > > > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272
>> >
>> > > > > > >
>> > > > > > > Hi Julie,
>> > > > > > >
>> > > > > > > I have completed the registration.
>> > > > > > >
>> > > > > > > Best,
>> > > > > > >
>> > > > > > > Yating
>> > > > > > >
>> > > > > > > On Wed, Apr 26, 2017 at 1:05 PM, Julie Prestopnik via
RT <
>> > > > > > > met_help at ucar.edu>
>> > > > > > > wrote:
>> > > > > > >
>> > > > > > > > I'd be happy to try to help you with this issue, but
we can
>> > only
>> > > > > > provide
>> > > > > > > > direct support to registered users of MET.  We do
this to
>> > ensure
>> > > > that
>> > > > > > we
>> > > > > > > > remain in compliance with U.S. export control laws.
You can
>> > fill
>> > > > out
>> > > > > > the
>> > > > > > > > registration form here:
>> > > > > > > >
http://www.dtcenter.org/met/users/downloads/index.php
>> > > > > > > > Just enter your email address and hit enter.   That
should
>> take
>> > > you
>> > > > > to
>> > > > > > > the
>> > > > > > > > registration page.
>> > > > > > > >
>> > > > > > > > Please write me back once you've filled that out, and
I
>> should
>> > be
>> > > > > able
>> > > > > > to
>> > > > > > > > offer more help.
>> > > > > > > >
>> > > > > > > > Thanks,
>> > > > > > > > Julie
>> > > > > > > >
>> > > > > > > > On Wed, Apr 26, 2017 at 10:51 AM, Yating Zhang via RT
<
>> > > > > > met_help at ucar.edu
>> > > > > > > >
>> > > > > > > > wrote:
>> > > > > > > >
>> > > > > > > > >
>> > > > > > > > > Wed Apr 26 10:51:09 2017: Request 80272 was acted
upon.
>> > > > > > > > > Transaction: Ticket created by
zhyating at terpmail.umd.edu
>> > > > > > > > >        Queue: met_help
>> > > > > > > > >      Subject: MET 6.0 Compiling Issue
>> > > > > > > > >        Owner: Nobody
>> > > > > > > > >   Requestors: zhyating at terpmail.umd.edu
>> > > > > > > > >       Status: new
>> > > > > > > > >  Ticket <URL: https://rt.rap.ucar.edu/rt/Tic
>> > > > > > ket/Display.html?id=80272
>> > > > > > > >
>> > > > > > > > >
>> > > > > > > > >
>> > > > > > > > > Hi,
>> > > > > > > > >
>> > > > > > > > > I have troubles in compiling the MET 6.0
>> > > > (met-6.0_bugfix.20170419)
>> > > > > on
>> > > > > > > > macOS
>> > > > > > > > > Sierra. I have installed the libraries NetCDF C,
NetCDF
>> C++,
>> > > > Zlib,
>> > > > > > > HDF5,
>> > > > > > > > > BUFRLIB following the online tutorial.
>> > > > > > > > > http://www.dtcenter.org/met/us
>> ers/support/online_tutorial/
>> > > > > > > > >
METv6.0/tutorial.php?name=compilation&category=req_libs
>> > > > > > > > >
>> > > > > > > > > I checked every library and they all passed the
tests. I
>> can
>> > > > > install
>> > > > > > > MET
>> > > > > > > > > 6.0 share file without executable files generated.
I
>> attached
>> > > the
>> > > > > > > > documents
>> > > > > > > > > for make_test.log and config.log for your
reference, as
>> well
>> > as
>> > > > the
>> > > > > > > code
>> > > > > > > > I
>> > > > > > > > > used to compile (GUI compiler).  The NetCDF C,
NetCDF C++
>> are
>> > > > > > installed
>> > > > > > > > in
>> > > > > > > > > netcdf_C file.
>> > > > > > > > >
>> > > > > > > > > *export CC=gcc*
>> > > > > > > > >
>> > > > > > > > > *export CXX=g++*
>> > > > > > > > >
>> > > > > > > > > *export F77=gfortran*
>> > > > > > > > >
>> > > > > > > > > *export MET_NETCDF=/Users/yating/Deskt
>> op/MET_LIB/netcdf_C*
>> > > > > > > > >
>> > > > > > > > > *export MET_HDF5=/Users/yating/Desktop/MET_LIB/hdf5
*
>> > > > > > > > >
>> > > > > > > > > *export
MET_BUFR=/Users/yating/Downloads/BUFRLIB_v10-2-3
>> *
>> > > > > > > > >
>> > > > > > > > > *export MET_GSL=/Users/yating/Desktop/MET_LIB/gsl *
>> > > > > > > > >
>> > > > > > > > > *./configure
--prefix=/Users/yating/Desktop/MET_LIB/MET6*
>> > > > > > > > >
>> > > > > > > > >
>> > > > > > > > > I have cleaned and recompiled several times and
removed
>> and
>> > > > > > downloaded
>> > > > > > > > the
>> > > > > > > > > MET file, but it still had the same errors. I will
be
>> > > appreciated
>> > > > > if
>> > > > > > > you
>> > > > > > > > > can give me any help. Thank you for your time.
>> > > > > > > > >
>> > > > > > > > > Thanks,
>> > > > > > > > >
>> > > > > > > > > Yating
>> > > > > > > > >
>> > > > > > > > >
>> > > > > > > >
>> > > > > > > >
>> > > > > > >
>> > > > > > >
>> > > > > >
>> > > > > >
>> > > > >
>> > > > >
>> > > >
>> > > >
>> > >
>> > >
>> >
>> >
>>
>>
>

------------------------------------------------
Subject: MET 6.0 Compiling Issue
From: Yating Zhang
Time: Mon May 15 10:50:30 2017

Hi Julie,

I am sorry that I haven't worked it out, but I am really tired with
the
installation. I am trying to use other software instead. I know MET is
a
very powerful software package and you are willing to help me out, so
I may
seek your help in the future when I have to use the MET for some
research.

Thank you for all your helps.

Best Wishes,

Yating

On Mon, May 15, 2017 at 11:38 AM, Julie Prestopnik via RT
<met_help at ucar.edu
> wrote:

> Hi.  I just wanted to follow up.  Were able to get MET successfully
> installed?
>
> Julie
>
> On Mon, May 1, 2017 at 12:39 PM, Julie Prestopnik <jpresto at ucar.edu>
> wrote:
>
> > Hi Yating.
> >
> > While I see that this line:
> >
> > configure:4849: g++ -g
/Users/yating/Desktop/MET_LIB/netcdf_C/include
> > -I${MET_NETCDF}/include -I${MET_HDF5}/include -I${MET_GSL}/include
> -DBLOCK4
> > -DMET_BASE="\"$(pkgdatadir)\""  -L${MET_NETCDF}/lib
-L${MET_HDF5}/lib
> > -L${MET_GSL}/lib -L${MET_BUFR}/lib conftest.cpp  >&5
> >
> > changed to:
> >
> > configure:4849: g++ -g
/Users/yating/Desktop/MET_LIB/netcdf_C/include
> > -I/Users/yating/Desktop/MET_LIB/netcdf_C/include
> > -I/Users/yating/Desktop/MET_LIB/hdf5/include
> -I/Users/yating/Desktop/MET_LIB/gsl/include
> > -DBLOCK4 -DMET_BASE="\"$(pkgdatadir)\""
-L/Users/yating/Desktop/MET_
> LIB/netcdf_C/lib
> > -L/Users/yating/Desktop/MET_LIB/hdf5/lib
-L/Users/yating/Desktop/MET_
> LIB/gsl/lib
> > -L/Users/yating/Downloads/BUFRLIB_v10-2-3 conftest.cpp  >&5
> >
> > and these warnings went away:
> >
> > ld: warning: directory not found for option '-L${MET_NETCDF}/lib'
> > ld: warning: directory not found for option '-L${MET_HDF5}/lib'
> > ld: warning: directory not found for option '-L${MET_GSL}/lib'
> > ld: warning: directory not found for option '-L${MET_BUFR}/lib'
> >
> > but this problem still exists:
> >
> > ld: can't map file, errno=22 file '/Users/yating/Desktop/MET_
> LIB/netcdf_C/include'
> > for architecture x86_64
> >
> > It looks like "/Users/yating/Desktop/MET_LIB/netcdf_C/include" is
> missing
> > the "-I" before it.  I see that it is listed twice, once with the
"-I"
> and
> > once without:
> >
> > configure:4849: g++ -g
/Users/yating/Desktop/MET_LIB/netcdf_C/include
> > -I/Users/yating/Desktop/MET_LIB/netcdf_C/include  ...
> >
> > I think we need to get rid of that first one, without the "-I".
Perhaps
> > you can check your environment variable CPPFLAGS  by running "echo
> > $CPPFLAGS" and reset it so that it only has that directory listed
once,
> > with the "-I".
> >
> > Please try fixing up your CPPFLAGS environment variable.  Then,
please
> run
> > "make clean" and then run configure again, followed by "make
install",
> and
> > if that was successful, then please run "make test".   Please let
us know
> > if you encounter any more problems or if you get a successful
install.
> >
> >
> > Thanks!
> >
> > Julie
> >
> >
> > On Mon, May 1, 2017 at 12:16 PM, Yating Zhang via RT
<met_help at ucar.edu>
> > wrote:
> >
> >>
> >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> >>
> >> Hi Julie,
> >>
> >> I updated the config.log. The next problem may be associated with
> >> environmental settings. I am searching answers from the Internet,
but if
> >> you have any answers or suggestions, please let me know.
> >>
> >> The code I used to configure the MET6.0 is as follows.
> >>
> >> export CC=gcc
> >> export CXX=g++
> >> export F77=gfortran
> >> export
MET_NETCDFINC=/Users/yating/Desktop/MET_LIB/netcdf_C/include
> >> export MET_NETCDFLIB=/Users/yating/Desktop/MET_LIB/netcdf_C/lib
> >> export MET_HDF5INC=/Users/yating/Desktop/MET_LIB/hdf5/include
> >> export MET_HDF5LIB=/Users/yating/Desktop/MET_LIB/hdf5/lib
> >> export MET_BUFRLIB=/Users/yating/Downloads/BUFRLIB_v10-2-3
> >> export MET_GSLINC=/Users/yating/Desktop/MET_LIB/gsl/include
> >> export MET_GSLLIB=/Users/yating/Desktop/MET_LIB/gsl/lib
> >> export
> >> LD_LIBRARY_PATH=/Users/yating/Desktop/MET_LIB/netcdf_C/lib:/
> >> Users/yating/Desktop/MET_LIB/gsl/lib:${LD_LIBRARY_PATH}
> >> CPPFLAGS=/Users/yating/Desktop/MET_LIB/netcdf_C/include
./configure
> >> --prefix=/Users/yating/Desktop/MET_LIB/MET6
> >>
> >>
> >> Thank you for all the helps,
> >>
> >> Yating
> >>
> >>
> >> On Mon, May 1, 2017 at 11:27 AM, Julie Prestopnik via RT <
> >> met_help at ucar.edu>
> >> wrote:
> >>
> >> > Hi Yating.  I'm sorry to see that you are still having problems
> getting
> >> > met-6.0 installed.
> >> >
> >> > From your config.log file, it looks like there might be a
problem at
> the
> >> > configure step:
> >> >
> >> > ld: warning: directory not found for option '-
L${MET_NETCDF}/lib'
> >> > ld: warning: directory not found for option '-L${MET_HDF5}/lib'
> >> > ld: warning: directory not found for option '-L${MET_GSL}/lib'
> >> > ld: warning: directory not found for option '-L${MET_BUFR}/lib'
> >> > ld: can't map file, errno=22 file
> >> > '/Users/yating/Desktop/MET_LIB/netcdf_C/include' for
architecture
> >> x86_64
> >> > collect2: error: ld returned 1 exit status
> >> >
> >> > Please take a look at this page of the online tutorial for met-
6.0:
> >> >
> >> > http://www.dtcenter.org/met/users/support/online_tutorial/
> >> > METv6.0/tutorial.php?name=compilation&category=configure
> >> >
> >> > and make sure that you have the environment variables set up
correctly
> >> for
> >> > your system.
> >> >
> >> > Then, please run "make clean" and then run configure again,
followed
> by
> >> > "make install", and if that was successful, then please run
"make
> test".
> >> > You can continue on from that page in the tutorial to the
following
> >> pages
> >> > until you have met-6.0 installed successfully.
> >> >
> >> > Please give that a try and let us know if you encounter any
more
> >> problems
> >> > or if you get a successful install.
> >> >
> >> > Julie
> >> >
> >> >
> >> >
> >> >
> >> >
> >> > On Sun, Apr 30, 2017 at 5:09 PM, Yating Zhang via RT <
> met_help at ucar.edu
> >> >
> >> > wrote:
> >> >
> >> > >
> >> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272
>
> >> > >
> >> > > Hi Julie,
> >> > >
> >> > > Thank you for you reply. I think there is no problem with
these
> >> > libraries.
> >> > > Could you share the code for compiling the MET6.0? Have you
set any
> >> path
> >> > > for the include file for netCDF? I have added the library
path,
> >> because I
> >> > > don't have the *.so files.
> >> > >
> >> > > I attached the two files for the config.log and
make_install.log,
> >> > > respectively.
> >> > >
> >> > > Thanks,
> >> > >
> >> > > Yating
> >> > >
> >> > >
> >> > >
> >> > > On Thu, Apr 27, 2017 at 3:07 PM, Julie Prestopnik via RT <
> >> > > met_help at ucar.edu>
> >> > > wrote:
> >> > >
> >> > > > Hi Yating.
> >> > > >
> >> > > > I am sorry to hear that you are still having difficulty
with the
> >> netcdf
> >> > > > library files.   Perhaps it would help if I gave more
detailed
> >> > > instructions
> >> > > > on how I compiled specific versions of the HDF5 (first, I
> installed
> >> > > zlib),
> >> > > > NetCDF C, and NetCDF CXX packages (below).
> >> > > >
> >> > > > I set the following environment variables:
> >> > > >
> >> > > > export iprefix=/usrx/local/dev/met/met-6.0/external_libs
> >> > > > export libdir=/usrx/local/dev/met/met-6.0/external_libs/lib
> >> > > > export incdir=/usrx/local/dev/met/met-
6.0/external_libs/include
> >> > > >
> >> > > >
> >> > > > and then did the following:
> >> > > >
> >> > > > Download the zlib package:
> >> > > > http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-1.2.6.tar
> >> > > > Unpack the package (tar -xvf)
> >> > > > cd zlib-1.2.6
> >> > > > ./configure --prefix=$iprefix/ --enable-shared
> >> > > > make; make install
> >> > > >
> >> > > > Download the HDF5 package:
> >> > > > https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/
> >> > > > hdf5-1.8.18/src/hdf5-1.8.18.tar.gz
> >> > > > Unpack the package (tar -xvf)
> >> > > > ./configure --prefix=$iprefix --with-zlib=$libdir
> LDFLAGS=-L$libdir
> >> > > > CPPFLAGS=-I$incdir
> >> > > > make
> >> > > > make check
> >> > > > make install
> >> > > >
> >> > > > Download the NetCDF C package:
> >> > > > ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.zip
> >> > > > Unpack the package (unzip)
> >> > > > cd netcdf-4.4.1.1
> >> > > > export FC=''
> >> > > > export F90=''
> >> > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-
I$incdir
> >> > > > make; make install
> >> > > >
> >> > > > Download the NetCDF CXX package:
> >> > > > https://www.gfd-dennou.org/arch/netcdf/unidata-mirror/
> >> > > > netcdf-cxx4-4.3.0.tar.gz
> >> > > > Unpack the package (tar -zxf)
> >> > > > cd netcdf-cxx4-4.3.0
> >> > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir CPPFLAGS=-
I$incdir
> >> > > > make; make install
> >> > > >
> >> > > >
> >> > > > Please give those a try and let me know how it works out.
Please
> >> let
> >> > me
> >> > > > know if you have any questions about these instructions.
> >> > > >
> >> > > > Thanks,
> >> > > > Julie
> >> > > >
> >> > > >
> >> > > > On Thu, Apr 27, 2017 at 12:47 PM, Yating Zhang via RT <
> >> > met_help at ucar.edu
> >> > > >
> >> > > > wrote:
> >> > > >
> >> > > > >
> >> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> >> > > > >
> >> > > > > Hi Julie,
> >> > > > >
> >> > > > > Thank you for your reply. I don't have the
> >> > > *$MET_NETCDF/lib/libnetcdf.so*
> >> > > > > and $MET_NETCDF/lib/libnetcdf_c++.*so*. I recompiled
NetCDF C
> and
> >> > > NetCDF
> >> > > > > C++, but the two were still not generated.
> >> > > > >
> >> > > > > Thanks,
> >> > > > >
> >> > > > > Yating
> >> > > > >
> >> > > > > On Wed, Apr 26, 2017 at 4:52 PM, Julie Prestopnik via RT
<
> >> > > > > met_help at ucar.edu>
> >> > > > > wrote:
> >> > > > >
> >> > > > > > Thank you, Yating.
> >> > > > > >
> >> > > > > > I'm sorry to hear that you are having problems with
met-6.0.
> >> > > > > >
> >> > > > > > I see the following error in your make_test.log file:
> >> > > > > >
> >> > > > > > fatal error: netcdf: No such file or directory
> >> > > > > >  #include <netcdf>
> >> > > > > >
> >> > > > > > It looks like MET is having a difficult time finding
the file
> >> > > "netcdf",
> >> > > > > > which is included in the NetCDF-CXX installation.  I
see in
> your
> >> > > > > config.log
> >> > > > > > that you have defined MET_NETCDF to be
> >> > > > > > /Users/yating/Desktop/MET_LIB/netcdf_C.
> >> > > > > >
> >> > > > > > Here is a quick reference checklist for NetCDF4C++
> installation
> >> > that
> >> > > > you
> >> > > > > > can use to see if you have the necessary files:
> >> > > > > >
> >> > > > > > Files for NetCDF4 C:
> >> > > > > >
> >> > > > > > $MET_NETCDF/include/netcdf.h
> >> > > > > > $MET_NETCDF/lib/libnetcdf.a
> >> > > > > > $MET_NETCDF/lib/libnetcdf.so
> >> > > > > >
> >> > > > > > Files for NetCDF4 C++:
> >> > > > > >
> >> > > > > > $MET_NETCDF/include/netcdf
> >> > > > > > $MET_NETCDF/lib/libnetcdf_c++4.a
> >> > > > > > $MET_NETCDF/lib/libnetcdf_c++4.so
> >> > > > > >
> >> > > > > > Files for NetCDF3 C++ (not required, if --disabled-
netcdf4 is
> >> > > > activated):
> >> > > > > >
> >> > > > > > $MET_NETCDF/include/netcdf.hh
> >> > > > > > $MET_NETCDF/lib/libnetcdf_c++.a
> >> > > > > > $MET_NETCDF/lib/libnetcdf_c++.so
> >> > > > > >
> >> > > > > > Please take a look and see if those files exist and let
me
> know.
> >> > If
> >> > > > they
> >> > > > > > do exist, could you please also attach your
make_install.log
> >> file
> >> > for
> >> > > > me?
> >> > > > > >
> >> > > > > > Thanks!
> >> > > > > >
> >> > > > > > Julie
> >> > > > > >
> >> > > > > >
> >> > > > > > On Wed, Apr 26, 2017 at 1:53 PM, Yating Zhang via RT <
> >> > > > met_help at ucar.edu>
> >> > > > > > wrote:
> >> > > > > >
> >> > > > > > >
> >> > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> Ticket/Display.html?id=80272
> >> >
> >> > > > > > >
> >> > > > > > > Hi Julie,
> >> > > > > > >
> >> > > > > > > I have completed the registration.
> >> > > > > > >
> >> > > > > > > Best,
> >> > > > > > >
> >> > > > > > > Yating
> >> > > > > > >
> >> > > > > > > On Wed, Apr 26, 2017 at 1:05 PM, Julie Prestopnik via
RT <
> >> > > > > > > met_help at ucar.edu>
> >> > > > > > > wrote:
> >> > > > > > >
> >> > > > > > > > I'd be happy to try to help you with this issue,
but we
> can
> >> > only
> >> > > > > > provide
> >> > > > > > > > direct support to registered users of MET.  We do
this to
> >> > ensure
> >> > > > that
> >> > > > > > we
> >> > > > > > > > remain in compliance with U.S. export control laws.
You
> can
> >> > fill
> >> > > > out
> >> > > > > > the
> >> > > > > > > > registration form here:
> >> > > > > > > >
http://www.dtcenter.org/met/users/downloads/index.php
> >> > > > > > > > Just enter your email address and hit enter.   That
should
> >> take
> >> > > you
> >> > > > > to
> >> > > > > > > the
> >> > > > > > > > registration page.
> >> > > > > > > >
> >> > > > > > > > Please write me back once you've filled that out,
and I
> >> should
> >> > be
> >> > > > > able
> >> > > > > > to
> >> > > > > > > > offer more help.
> >> > > > > > > >
> >> > > > > > > > Thanks,
> >> > > > > > > > Julie
> >> > > > > > > >
> >> > > > > > > > On Wed, Apr 26, 2017 at 10:51 AM, Yating Zhang via
RT <
> >> > > > > > met_help at ucar.edu
> >> > > > > > > >
> >> > > > > > > > wrote:
> >> > > > > > > >
> >> > > > > > > > >
> >> > > > > > > > > Wed Apr 26 10:51:09 2017: Request 80272 was acted
upon.
> >> > > > > > > > > Transaction: Ticket created by
> zhyating at terpmail.umd.edu
> >> > > > > > > > >        Queue: met_help
> >> > > > > > > > >      Subject: MET 6.0 Compiling Issue
> >> > > > > > > > >        Owner: Nobody
> >> > > > > > > > >   Requestors: zhyating at terpmail.umd.edu
> >> > > > > > > > >       Status: new
> >> > > > > > > > >  Ticket <URL: https://rt.rap.ucar.edu/rt/Tic
> >> > > > > > ket/Display.html?id=80272
> >> > > > > > > >
> >> > > > > > > > >
> >> > > > > > > > >
> >> > > > > > > > > Hi,
> >> > > > > > > > >
> >> > > > > > > > > I have troubles in compiling the MET 6.0
> >> > > > (met-6.0_bugfix.20170419)
> >> > > > > on
> >> > > > > > > > macOS
> >> > > > > > > > > Sierra. I have installed the libraries NetCDF C,
NetCDF
> >> C++,
> >> > > > Zlib,
> >> > > > > > > HDF5,
> >> > > > > > > > > BUFRLIB following the online tutorial.
> >> > > > > > > > > http://www.dtcenter.org/met/us
> >> ers/support/online_tutorial/
> >> > > > > > > > >
METv6.0/tutorial.php?name=compilation&category=req_libs
> >> > > > > > > > >
> >> > > > > > > > > I checked every library and they all passed the
tests. I
> >> can
> >> > > > > install
> >> > > > > > > MET
> >> > > > > > > > > 6.0 share file without executable files
generated. I
> >> attached
> >> > > the
> >> > > > > > > > documents
> >> > > > > > > > > for make_test.log and config.log for your
reference, as
> >> well
> >> > as
> >> > > > the
> >> > > > > > > code
> >> > > > > > > > I
> >> > > > > > > > > used to compile (GUI compiler).  The NetCDF C,
NetCDF
> C++
> >> are
> >> > > > > > installed
> >> > > > > > > > in
> >> > > > > > > > > netcdf_C file.
> >> > > > > > > > >
> >> > > > > > > > > *export CC=gcc*
> >> > > > > > > > >
> >> > > > > > > > > *export CXX=g++*
> >> > > > > > > > >
> >> > > > > > > > > *export F77=gfortran*
> >> > > > > > > > >
> >> > > > > > > > > *export MET_NETCDF=/Users/yating/Deskt
> >> op/MET_LIB/netcdf_C*
> >> > > > > > > > >
> >> > > > > > > > > *export
MET_HDF5=/Users/yating/Desktop/MET_LIB/hdf5 *
> >> > > > > > > > >
> >> > > > > > > > > *export MET_BUFR=/Users/yating/
> Downloads/BUFRLIB_v10-2-3
> >> *
> >> > > > > > > > >
> >> > > > > > > > > *export MET_GSL=/Users/yating/Desktop/MET_LIB/gsl
*
> >> > > > > > > > >
> >> > > > > > > > > *./configure --prefix=/Users/yating/
> Desktop/MET_LIB/MET6*
> >> > > > > > > > >
> >> > > > > > > > >
> >> > > > > > > > > I have cleaned and recompiled several times and
removed
> >> and
> >> > > > > > downloaded
> >> > > > > > > > the
> >> > > > > > > > > MET file, but it still had the same errors. I
will be
> >> > > appreciated
> >> > > > > if
> >> > > > > > > you
> >> > > > > > > > > can give me any help. Thank you for your time.
> >> > > > > > > > >
> >> > > > > > > > > Thanks,
> >> > > > > > > > >
> >> > > > > > > > > Yating
> >> > > > > > > > >
> >> > > > > > > > >
> >> > > > > > > >
> >> > > > > > > >
> >> > > > > > >
> >> > > > > > >
> >> > > > > >
> >> > > > > >
> >> > > > >
> >> > > > >
> >> > > >
> >> > > >
> >> > >
> >> > >
> >> >
> >> >
> >>
> >>
> >
>
>

------------------------------------------------
Subject: MET 6.0 Compiling Issue
From: John Halley Gotway
Time: Mon May 15 11:15:39 2017

Hello Yating,

I see that you've been corresponding with Julie about getting MET
compiled.  We realize that getting MET compiled can be frustrating.
I'm
wondering where you're trying to install it?  Is it on a Linux machine
or a
laptop?

We have recently had success providing pre-compiled versions of MET
through
docker containers.  If you happen to be using a laptop on which you
could
install the docker software, you could easily install MET version 6.0
as a
docker image.

Thanks,
John Halley Gotway

On Mon, May 15, 2017 at 10:50 AM, Yating Zhang via RT
<met_help at ucar.edu>
wrote:

>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
>
> Hi Julie,
>
> I am sorry that I haven't worked it out, but I am really tired with
the
> installation. I am trying to use other software instead. I know MET
is a
> very powerful software package and you are willing to help me out,
so I may
> seek your help in the future when I have to use the MET for some
research.
>
> Thank you for all your helps.
>
> Best Wishes,
>
> Yating
>
> On Mon, May 15, 2017 at 11:38 AM, Julie Prestopnik via RT <
> met_help at ucar.edu
> > wrote:
>
> > Hi.  I just wanted to follow up.  Were able to get MET
successfully
> > installed?
> >
> > Julie
> >
> > On Mon, May 1, 2017 at 12:39 PM, Julie Prestopnik
<jpresto at ucar.edu>
> > wrote:
> >
> > > Hi Yating.
> > >
> > > While I see that this line:
> > >
> > > configure:4849: g++ -g
/Users/yating/Desktop/MET_LIB/netcdf_C/include
> > > -I${MET_NETCDF}/include -I${MET_HDF5}/include
-I${MET_GSL}/include
> > -DBLOCK4
> > > -DMET_BASE="\"$(pkgdatadir)\""  -L${MET_NETCDF}/lib
-L${MET_HDF5}/lib
> > > -L${MET_GSL}/lib -L${MET_BUFR}/lib conftest.cpp  >&5
> > >
> > > changed to:
> > >
> > > configure:4849: g++ -g
/Users/yating/Desktop/MET_LIB/netcdf_C/include
> > > -I/Users/yating/Desktop/MET_LIB/netcdf_C/include
> > > -I/Users/yating/Desktop/MET_LIB/hdf5/include
> > -I/Users/yating/Desktop/MET_LIB/gsl/include
> > > -DBLOCK4 -DMET_BASE="\"$(pkgdatadir)\""
-L/Users/yating/Desktop/MET_
> > LIB/netcdf_C/lib
> > > -L/Users/yating/Desktop/MET_LIB/hdf5/lib
-L/Users/yating/Desktop/MET_
> > LIB/gsl/lib
> > > -L/Users/yating/Downloads/BUFRLIB_v10-2-3 conftest.cpp  >&5
> > >
> > > and these warnings went away:
> > >
> > > ld: warning: directory not found for option '-
L${MET_NETCDF}/lib'
> > > ld: warning: directory not found for option '-L${MET_HDF5}/lib'
> > > ld: warning: directory not found for option '-L${MET_GSL}/lib'
> > > ld: warning: directory not found for option '-L${MET_BUFR}/lib'
> > >
> > > but this problem still exists:
> > >
> > > ld: can't map file, errno=22 file '/Users/yating/Desktop/MET_
> > LIB/netcdf_C/include'
> > > for architecture x86_64
> > >
> > > It looks like "/Users/yating/Desktop/MET_LIB/netcdf_C/include"
is
> > missing
> > > the "-I" before it.  I see that it is listed twice, once with
the "-I"
> > and
> > > once without:
> > >
> > > configure:4849: g++ -g
/Users/yating/Desktop/MET_LIB/netcdf_C/include
> > > -I/Users/yating/Desktop/MET_LIB/netcdf_C/include  ...
> > >
> > > I think we need to get rid of that first one, without the "-I".
> Perhaps
> > > you can check your environment variable CPPFLAGS  by running
"echo
> > > $CPPFLAGS" and reset it so that it only has that directory
listed once,
> > > with the "-I".
> > >
> > > Please try fixing up your CPPFLAGS environment variable.  Then,
please
> > run
> > > "make clean" and then run configure again, followed by "make
install",
> > and
> > > if that was successful, then please run "make test".   Please
let us
> know
> > > if you encounter any more problems or if you get a successful
install.
> > >
> > >
> > > Thanks!
> > >
> > > Julie
> > >
> > >
> > > On Mon, May 1, 2017 at 12:16 PM, Yating Zhang via RT <
> met_help at ucar.edu>
> > > wrote:
> > >
> > >>
> > >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> > >>
> > >> Hi Julie,
> > >>
> > >> I updated the config.log. The next problem may be associated
with
> > >> environmental settings. I am searching answers from the
Internet, but
> if
> > >> you have any answers or suggestions, please let me know.
> > >>
> > >> The code I used to configure the MET6.0 is as follows.
> > >>
> > >> export CC=gcc
> > >> export CXX=g++
> > >> export F77=gfortran
> > >> export
MET_NETCDFINC=/Users/yating/Desktop/MET_LIB/netcdf_C/include
> > >> export MET_NETCDFLIB=/Users/yating/Desktop/MET_LIB/netcdf_C/lib
> > >> export MET_HDF5INC=/Users/yating/Desktop/MET_LIB/hdf5/include
> > >> export MET_HDF5LIB=/Users/yating/Desktop/MET_LIB/hdf5/lib
> > >> export MET_BUFRLIB=/Users/yating/Downloads/BUFRLIB_v10-2-3
> > >> export MET_GSLINC=/Users/yating/Desktop/MET_LIB/gsl/include
> > >> export MET_GSLLIB=/Users/yating/Desktop/MET_LIB/gsl/lib
> > >> export
> > >> LD_LIBRARY_PATH=/Users/yating/Desktop/MET_LIB/netcdf_C/lib:/
> > >> Users/yating/Desktop/MET_LIB/gsl/lib:${LD_LIBRARY_PATH}
> > >> CPPFLAGS=/Users/yating/Desktop/MET_LIB/netcdf_C/include
./configure
> > >> --prefix=/Users/yating/Desktop/MET_LIB/MET6
> > >>
> > >>
> > >> Thank you for all the helps,
> > >>
> > >> Yating
> > >>
> > >>
> > >> On Mon, May 1, 2017 at 11:27 AM, Julie Prestopnik via RT <
> > >> met_help at ucar.edu>
> > >> wrote:
> > >>
> > >> > Hi Yating.  I'm sorry to see that you are still having
problems
> > getting
> > >> > met-6.0 installed.
> > >> >
> > >> > From your config.log file, it looks like there might be a
problem at
> > the
> > >> > configure step:
> > >> >
> > >> > ld: warning: directory not found for option '-
L${MET_NETCDF}/lib'
> > >> > ld: warning: directory not found for option '-
L${MET_HDF5}/lib'
> > >> > ld: warning: directory not found for option '-
L${MET_GSL}/lib'
> > >> > ld: warning: directory not found for option '-
L${MET_BUFR}/lib'
> > >> > ld: can't map file, errno=22 file
> > >> > '/Users/yating/Desktop/MET_LIB/netcdf_C/include' for
architecture
> > >> x86_64
> > >> > collect2: error: ld returned 1 exit status
> > >> >
> > >> > Please take a look at this page of the online tutorial for
met-6.0:
> > >> >
> > >> > http://www.dtcenter.org/met/users/support/online_tutorial/
> > >> > METv6.0/tutorial.php?name=compilation&category=configure
> > >> >
> > >> > and make sure that you have the environment variables set up
> correctly
> > >> for
> > >> > your system.
> > >> >
> > >> > Then, please run "make clean" and then run configure again,
followed
> > by
> > >> > "make install", and if that was successful, then please run
"make
> > test".
> > >> > You can continue on from that page in the tutorial to the
following
> > >> pages
> > >> > until you have met-6.0 installed successfully.
> > >> >
> > >> > Please give that a try and let us know if you encounter any
more
> > >> problems
> > >> > or if you get a successful install.
> > >> >
> > >> > Julie
> > >> >
> > >> >
> > >> >
> > >> >
> > >> >
> > >> > On Sun, Apr 30, 2017 at 5:09 PM, Yating Zhang via RT <
> > met_help at ucar.edu
> > >> >
> > >> > wrote:
> > >> >
> > >> > >
> > >> > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> > >> > >
> > >> > > Hi Julie,
> > >> > >
> > >> > > Thank you for you reply. I think there is no problem with
these
> > >> > libraries.
> > >> > > Could you share the code for compiling the MET6.0? Have you
set
> any
> > >> path
> > >> > > for the include file for netCDF? I have added the library
path,
> > >> because I
> > >> > > don't have the *.so files.
> > >> > >
> > >> > > I attached the two files for the config.log and
make_install.log,
> > >> > > respectively.
> > >> > >
> > >> > > Thanks,
> > >> > >
> > >> > > Yating
> > >> > >
> > >> > >
> > >> > >
> > >> > > On Thu, Apr 27, 2017 at 3:07 PM, Julie Prestopnik via RT <
> > >> > > met_help at ucar.edu>
> > >> > > wrote:
> > >> > >
> > >> > > > Hi Yating.
> > >> > > >
> > >> > > > I am sorry to hear that you are still having difficulty
with the
> > >> netcdf
> > >> > > > library files.   Perhaps it would help if I gave more
detailed
> > >> > > instructions
> > >> > > > on how I compiled specific versions of the HDF5 (first, I
> > installed
> > >> > > zlib),
> > >> > > > NetCDF C, and NetCDF CXX packages (below).
> > >> > > >
> > >> > > > I set the following environment variables:
> > >> > > >
> > >> > > > export iprefix=/usrx/local/dev/met/met-6.0/external_libs
> > >> > > > export libdir=/usrx/local/dev/met/met-
6.0/external_libs/lib
> > >> > > > export incdir=/usrx/local/dev/met/met-
6.0/external_libs/include
> > >> > > >
> > >> > > >
> > >> > > > and then did the following:
> > >> > > >
> > >> > > > Download the zlib package:
> > >> > > > http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-
1.2.6.tar
> > >> > > > Unpack the package (tar -xvf)
> > >> > > > cd zlib-1.2.6
> > >> > > > ./configure --prefix=$iprefix/ --enable-shared
> > >> > > > make; make install
> > >> > > >
> > >> > > > Download the HDF5 package:
> > >> > > > https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/
> > >> > > > hdf5-1.8.18/src/hdf5-1.8.18.tar.gz
> > >> > > > Unpack the package (tar -xvf)
> > >> > > > ./configure --prefix=$iprefix --with-zlib=$libdir
> > LDFLAGS=-L$libdir
> > >> > > > CPPFLAGS=-I$incdir
> > >> > > > make
> > >> > > > make check
> > >> > > > make install
> > >> > > >
> > >> > > > Download the NetCDF C package:
> > >> > > > ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.4.1.1.zip
> > >> > > > Unpack the package (unzip)
> > >> > > > cd netcdf-4.4.1.1
> > >> > > > export FC=''
> > >> > > > export F90=''
> > >> > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir
> CPPFLAGS=-I$incdir
> > >> > > > make; make install
> > >> > > >
> > >> > > > Download the NetCDF CXX package:
> > >> > > > https://www.gfd-dennou.org/arch/netcdf/unidata-mirror/
> > >> > > > netcdf-cxx4-4.3.0.tar.gz
> > >> > > > Unpack the package (tar -zxf)
> > >> > > > cd netcdf-cxx4-4.3.0
> > >> > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir
> CPPFLAGS=-I$incdir
> > >> > > > make; make install
> > >> > > >
> > >> > > >
> > >> > > > Please give those a try and let me know how it works out.
> Please
> > >> let
> > >> > me
> > >> > > > know if you have any questions about these instructions.
> > >> > > >
> > >> > > > Thanks,
> > >> > > > Julie
> > >> > > >
> > >> > > >
> > >> > > > On Thu, Apr 27, 2017 at 12:47 PM, Yating Zhang via RT <
> > >> > met_help at ucar.edu
> > >> > > >
> > >> > > > wrote:
> > >> > > >
> > >> > > > >
> > >> > > > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272
> >
> > >> > > > >
> > >> > > > > Hi Julie,
> > >> > > > >
> > >> > > > > Thank you for your reply. I don't have the
> > >> > > *$MET_NETCDF/lib/libnetcdf.so*
> > >> > > > > and $MET_NETCDF/lib/libnetcdf_c++.*so*. I recompiled
NetCDF C
> > and
> > >> > > NetCDF
> > >> > > > > C++, but the two were still not generated.
> > >> > > > >
> > >> > > > > Thanks,
> > >> > > > >
> > >> > > > > Yating
> > >> > > > >
> > >> > > > > On Wed, Apr 26, 2017 at 4:52 PM, Julie Prestopnik via
RT <
> > >> > > > > met_help at ucar.edu>
> > >> > > > > wrote:
> > >> > > > >
> > >> > > > > > Thank you, Yating.
> > >> > > > > >
> > >> > > > > > I'm sorry to hear that you are having problems with
met-6.0.
> > >> > > > > >
> > >> > > > > > I see the following error in your make_test.log file:
> > >> > > > > >
> > >> > > > > > fatal error: netcdf: No such file or directory
> > >> > > > > >  #include <netcdf>
> > >> > > > > >
> > >> > > > > > It looks like MET is having a difficult time finding
the
> file
> > >> > > "netcdf",
> > >> > > > > > which is included in the NetCDF-CXX installation.  I
see in
> > your
> > >> > > > > config.log
> > >> > > > > > that you have defined MET_NETCDF to be
> > >> > > > > > /Users/yating/Desktop/MET_LIB/netcdf_C.
> > >> > > > > >
> > >> > > > > > Here is a quick reference checklist for NetCDF4C++
> > installation
> > >> > that
> > >> > > > you
> > >> > > > > > can use to see if you have the necessary files:
> > >> > > > > >
> > >> > > > > > Files for NetCDF4 C:
> > >> > > > > >
> > >> > > > > > $MET_NETCDF/include/netcdf.h
> > >> > > > > > $MET_NETCDF/lib/libnetcdf.a
> > >> > > > > > $MET_NETCDF/lib/libnetcdf.so
> > >> > > > > >
> > >> > > > > > Files for NetCDF4 C++:
> > >> > > > > >
> > >> > > > > > $MET_NETCDF/include/netcdf
> > >> > > > > > $MET_NETCDF/lib/libnetcdf_c++4.a
> > >> > > > > > $MET_NETCDF/lib/libnetcdf_c++4.so
> > >> > > > > >
> > >> > > > > > Files for NetCDF3 C++ (not required, if --disabled-
netcdf4
> is
> > >> > > > activated):
> > >> > > > > >
> > >> > > > > > $MET_NETCDF/include/netcdf.hh
> > >> > > > > > $MET_NETCDF/lib/libnetcdf_c++.a
> > >> > > > > > $MET_NETCDF/lib/libnetcdf_c++.so
> > >> > > > > >
> > >> > > > > > Please take a look and see if those files exist and
let me
> > know.
> > >> > If
> > >> > > > they
> > >> > > > > > do exist, could you please also attach your
make_install.log
> > >> file
> > >> > for
> > >> > > > me?
> > >> > > > > >
> > >> > > > > > Thanks!
> > >> > > > > >
> > >> > > > > > Julie
> > >> > > > > >
> > >> > > > > >
> > >> > > > > > On Wed, Apr 26, 2017 at 1:53 PM, Yating Zhang via RT
<
> > >> > > > met_help at ucar.edu>
> > >> > > > > > wrote:
> > >> > > > > >
> > >> > > > > > >
> > >> > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> > Ticket/Display.html?id=80272
> > >> >
> > >> > > > > > >
> > >> > > > > > > Hi Julie,
> > >> > > > > > >
> > >> > > > > > > I have completed the registration.
> > >> > > > > > >
> > >> > > > > > > Best,
> > >> > > > > > >
> > >> > > > > > > Yating
> > >> > > > > > >
> > >> > > > > > > On Wed, Apr 26, 2017 at 1:05 PM, Julie Prestopnik
via RT <
> > >> > > > > > > met_help at ucar.edu>
> > >> > > > > > > wrote:
> > >> > > > > > >
> > >> > > > > > > > I'd be happy to try to help you with this issue,
but we
> > can
> > >> > only
> > >> > > > > > provide
> > >> > > > > > > > direct support to registered users of MET.  We do
this
> to
> > >> > ensure
> > >> > > > that
> > >> > > > > > we
> > >> > > > > > > > remain in compliance with U.S. export control
laws.  You
> > can
> > >> > fill
> > >> > > > out
> > >> > > > > > the
> > >> > > > > > > > registration form here:
> > >> > > > > > > >    http://www.dtcenter.org/met/
> users/downloads/index.php
> > >> > > > > > > > Just enter your email address and hit enter.
That
> should
> > >> take
> > >> > > you
> > >> > > > > to
> > >> > > > > > > the
> > >> > > > > > > > registration page.
> > >> > > > > > > >
> > >> > > > > > > > Please write me back once you've filled that out,
and I
> > >> should
> > >> > be
> > >> > > > > able
> > >> > > > > > to
> > >> > > > > > > > offer more help.
> > >> > > > > > > >
> > >> > > > > > > > Thanks,
> > >> > > > > > > > Julie
> > >> > > > > > > >
> > >> > > > > > > > On Wed, Apr 26, 2017 at 10:51 AM, Yating Zhang
via RT <
> > >> > > > > > met_help at ucar.edu
> > >> > > > > > > >
> > >> > > > > > > > wrote:
> > >> > > > > > > >
> > >> > > > > > > > >
> > >> > > > > > > > > Wed Apr 26 10:51:09 2017: Request 80272 was
acted
> upon.
> > >> > > > > > > > > Transaction: Ticket created by
> > zhyating at terpmail.umd.edu
> > >> > > > > > > > >        Queue: met_help
> > >> > > > > > > > >      Subject: MET 6.0 Compiling Issue
> > >> > > > > > > > >        Owner: Nobody
> > >> > > > > > > > >   Requestors: zhyating at terpmail.umd.edu
> > >> > > > > > > > >       Status: new
> > >> > > > > > > > >  Ticket <URL: https://rt.rap.ucar.edu/rt/Tic
> > >> > > > > > ket/Display.html?id=80272
> > >> > > > > > > >
> > >> > > > > > > > >
> > >> > > > > > > > >
> > >> > > > > > > > > Hi,
> > >> > > > > > > > >
> > >> > > > > > > > > I have troubles in compiling the MET 6.0
> > >> > > > (met-6.0_bugfix.20170419)
> > >> > > > > on
> > >> > > > > > > > macOS
> > >> > > > > > > > > Sierra. I have installed the libraries NetCDF
C,
> NetCDF
> > >> C++,
> > >> > > > Zlib,
> > >> > > > > > > HDF5,
> > >> > > > > > > > > BUFRLIB following the online tutorial.
> > >> > > > > > > > > http://www.dtcenter.org/met/us
> > >> ers/support/online_tutorial/
> > >> > > > > > > > > METv6.0/tutorial.php?name=
> compilation&category=req_libs
> > >> > > > > > > > >
> > >> > > > > > > > > I checked every library and they all passed the
> tests. I
> > >> can
> > >> > > > > install
> > >> > > > > > > MET
> > >> > > > > > > > > 6.0 share file without executable files
generated. I
> > >> attached
> > >> > > the
> > >> > > > > > > > documents
> > >> > > > > > > > > for make_test.log and config.log for your
reference,
> as
> > >> well
> > >> > as
> > >> > > > the
> > >> > > > > > > code
> > >> > > > > > > > I
> > >> > > > > > > > > used to compile (GUI compiler).  The NetCDF C,
NetCDF
> > C++
> > >> are
> > >> > > > > > installed
> > >> > > > > > > > in
> > >> > > > > > > > > netcdf_C file.
> > >> > > > > > > > >
> > >> > > > > > > > > *export CC=gcc*
> > >> > > > > > > > >
> > >> > > > > > > > > *export CXX=g++*
> > >> > > > > > > > >
> > >> > > > > > > > > *export F77=gfortran*
> > >> > > > > > > > >
> > >> > > > > > > > > *export MET_NETCDF=/Users/yating/Deskt
> > >> op/MET_LIB/netcdf_C*
> > >> > > > > > > > >
> > >> > > > > > > > > *export
MET_HDF5=/Users/yating/Desktop/MET_LIB/hdf5 *
> > >> > > > > > > > >
> > >> > > > > > > > > *export MET_BUFR=/Users/yating/
> > Downloads/BUFRLIB_v10-2-3
> > >> *
> > >> > > > > > > > >
> > >> > > > > > > > > *export
MET_GSL=/Users/yating/Desktop/MET_LIB/gsl *
> > >> > > > > > > > >
> > >> > > > > > > > > *./configure --prefix=/Users/yating/
> > Desktop/MET_LIB/MET6*
> > >> > > > > > > > >
> > >> > > > > > > > >
> > >> > > > > > > > > I have cleaned and recompiled several times and
> removed
> > >> and
> > >> > > > > > downloaded
> > >> > > > > > > > the
> > >> > > > > > > > > MET file, but it still had the same errors. I
will be
> > >> > > appreciated
> > >> > > > > if
> > >> > > > > > > you
> > >> > > > > > > > > can give me any help. Thank you for your time.
> > >> > > > > > > > >
> > >> > > > > > > > > Thanks,
> > >> > > > > > > > >
> > >> > > > > > > > > Yating
> > >> > > > > > > > >
> > >> > > > > > > > >
> > >> > > > > > > >
> > >> > > > > > > >
> > >> > > > > > >
> > >> > > > > > >
> > >> > > > > >
> > >> > > > > >
> > >> > > > >
> > >> > > > >
> > >> > > >
> > >> > > >
> > >> > >
> > >> > >
> > >> >
> > >> >
> > >>
> > >>
> > >
> >
> >
>
>

------------------------------------------------
Subject: MET 6.0 Compiling Issue
From: Yating Zhang
Time: Mon May 15 15:59:07 2017

Hi John,

I try to install MET to my Apple Pro with an operating system of MacOS
Sierra. I am not sure if the biggest problem is the operating system
itself. I have installed the required libraries and successfully
tested
them. When it comes to compiling the MET6.0, many problems came out. I
searched the solutions on Internet, but found they are too complicated
or
out of date.

I don't have an access to Linux, but I can install docker on my
windows
laptop. Thank you for your suggestion.

Thanks,

Yating

On Mon, May 15, 2017 at 1:15 PM, John Halley Gotway via RT <
met_help at ucar.edu> wrote:

> Hello Yating,
>
> I see that you've been corresponding with Julie about getting MET
> compiled.  We realize that getting MET compiled can be frustrating.
I'm
> wondering where you're trying to install it?  Is it on a Linux
machine or a
> laptop?
>
> We have recently had success providing pre-compiled versions of MET
through
> docker containers.  If you happen to be using a laptop on which you
could
> install the docker software, you could easily install MET version
6.0 as a
> docker image.
>
> Thanks,
> John Halley Gotway
>
> On Mon, May 15, 2017 at 10:50 AM, Yating Zhang via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> >
> > Hi Julie,
> >
> > I am sorry that I haven't worked it out, but I am really tired
with the
> > installation. I am trying to use other software instead. I know
MET is a
> > very powerful software package and you are willing to help me out,
so I
> may
> > seek your help in the future when I have to use the MET for some
> research.
> >
> > Thank you for all your helps.
> >
> > Best Wishes,
> >
> > Yating
> >
> > On Mon, May 15, 2017 at 11:38 AM, Julie Prestopnik via RT <
> > met_help at ucar.edu
> > > wrote:
> >
> > > Hi.  I just wanted to follow up.  Were able to get MET
successfully
> > > installed?
> > >
> > > Julie
> > >
> > > On Mon, May 1, 2017 at 12:39 PM, Julie Prestopnik
<jpresto at ucar.edu>
> > > wrote:
> > >
> > > > Hi Yating.
> > > >
> > > > While I see that this line:
> > > >
> > > > configure:4849: g++ -g /Users/yating/Desktop/MET_LIB/
> netcdf_C/include
> > > > -I${MET_NETCDF}/include -I${MET_HDF5}/include
-I${MET_GSL}/include
> > > -DBLOCK4
> > > > -DMET_BASE="\"$(pkgdatadir)\""  -L${MET_NETCDF}/lib
-L${MET_HDF5}/lib
> > > > -L${MET_GSL}/lib -L${MET_BUFR}/lib conftest.cpp  >&5
> > > >
> > > > changed to:
> > > >
> > > > configure:4849: g++ -g /Users/yating/Desktop/MET_LIB/
> netcdf_C/include
> > > > -I/Users/yating/Desktop/MET_LIB/netcdf_C/include
> > > > -I/Users/yating/Desktop/MET_LIB/hdf5/include
> > > -I/Users/yating/Desktop/MET_LIB/gsl/include
> > > > -DBLOCK4 -DMET_BASE="\"$(pkgdatadir)\""
-L/Users/yating/Desktop/MET_
> > > LIB/netcdf_C/lib
> > > > -L/Users/yating/Desktop/MET_LIB/hdf5/lib
> -L/Users/yating/Desktop/MET_
> > > LIB/gsl/lib
> > > > -L/Users/yating/Downloads/BUFRLIB_v10-2-3 conftest.cpp  >&5
> > > >
> > > > and these warnings went away:
> > > >
> > > > ld: warning: directory not found for option '-
L${MET_NETCDF}/lib'
> > > > ld: warning: directory not found for option '-
L${MET_HDF5}/lib'
> > > > ld: warning: directory not found for option '-L${MET_GSL}/lib'
> > > > ld: warning: directory not found for option '-
L${MET_BUFR}/lib'
> > > >
> > > > but this problem still exists:
> > > >
> > > > ld: can't map file, errno=22 file '/Users/yating/Desktop/MET_
> > > LIB/netcdf_C/include'
> > > > for architecture x86_64
> > > >
> > > > It looks like "/Users/yating/Desktop/MET_LIB/netcdf_C/include"
is
> > > missing
> > > > the "-I" before it.  I see that it is listed twice, once with
the
> "-I"
> > > and
> > > > once without:
> > > >
> > > > configure:4849: g++ -g /Users/yating/Desktop/MET_LIB/
> netcdf_C/include
> > > > -I/Users/yating/Desktop/MET_LIB/netcdf_C/include  ...
> > > >
> > > > I think we need to get rid of that first one, without the "-
I".
> > Perhaps
> > > > you can check your environment variable CPPFLAGS  by running
"echo
> > > > $CPPFLAGS" and reset it so that it only has that directory
listed
> once,
> > > > with the "-I".
> > > >
> > > > Please try fixing up your CPPFLAGS environment variable.
Then,
> please
> > > run
> > > > "make clean" and then run configure again, followed by "make
> install",
> > > and
> > > > if that was successful, then please run "make test".   Please
let us
> > know
> > > > if you encounter any more problems or if you get a successful
> install.
> > > >
> > > >
> > > > Thanks!
> > > >
> > > > Julie
> > > >
> > > >
> > > > On Mon, May 1, 2017 at 12:16 PM, Yating Zhang via RT <
> > met_help at ucar.edu>
> > > > wrote:
> > > >
> > > >>
> > > >> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272
>
> > > >>
> > > >> Hi Julie,
> > > >>
> > > >> I updated the config.log. The next problem may be associated
with
> > > >> environmental settings. I am searching answers from the
Internet,
> but
> > if
> > > >> you have any answers or suggestions, please let me know.
> > > >>
> > > >> The code I used to configure the MET6.0 is as follows.
> > > >>
> > > >> export CC=gcc
> > > >> export CXX=g++
> > > >> export F77=gfortran
> > > >> export
MET_NETCDFINC=/Users/yating/Desktop/MET_LIB/netcdf_C/include
> > > >> export
MET_NETCDFLIB=/Users/yating/Desktop/MET_LIB/netcdf_C/lib
> > > >> export MET_HDF5INC=/Users/yating/Desktop/MET_LIB/hdf5/include
> > > >> export MET_HDF5LIB=/Users/yating/Desktop/MET_LIB/hdf5/lib
> > > >> export MET_BUFRLIB=/Users/yating/Downloads/BUFRLIB_v10-2-3
> > > >> export MET_GSLINC=/Users/yating/Desktop/MET_LIB/gsl/include
> > > >> export MET_GSLLIB=/Users/yating/Desktop/MET_LIB/gsl/lib
> > > >> export
> > > >> LD_LIBRARY_PATH=/Users/yating/Desktop/MET_LIB/netcdf_C/lib:/
> > > >> Users/yating/Desktop/MET_LIB/gsl/lib:${LD_LIBRARY_PATH}
> > > >> CPPFLAGS=/Users/yating/Desktop/MET_LIB/netcdf_C/include
./configure
> > > >> --prefix=/Users/yating/Desktop/MET_LIB/MET6
> > > >>
> > > >>
> > > >> Thank you for all the helps,
> > > >>
> > > >> Yating
> > > >>
> > > >>
> > > >> On Mon, May 1, 2017 at 11:27 AM, Julie Prestopnik via RT <
> > > >> met_help at ucar.edu>
> > > >> wrote:
> > > >>
> > > >> > Hi Yating.  I'm sorry to see that you are still having
problems
> > > getting
> > > >> > met-6.0 installed.
> > > >> >
> > > >> > From your config.log file, it looks like there might be a
problem
> at
> > > the
> > > >> > configure step:
> > > >> >
> > > >> > ld: warning: directory not found for option '-
L${MET_NETCDF}/lib'
> > > >> > ld: warning: directory not found for option '-
L${MET_HDF5}/lib'
> > > >> > ld: warning: directory not found for option '-
L${MET_GSL}/lib'
> > > >> > ld: warning: directory not found for option '-
L${MET_BUFR}/lib'
> > > >> > ld: can't map file, errno=22 file
> > > >> > '/Users/yating/Desktop/MET_LIB/netcdf_C/include' for
architecture
> > > >> x86_64
> > > >> > collect2: error: ld returned 1 exit status
> > > >> >
> > > >> > Please take a look at this page of the online tutorial for
> met-6.0:
> > > >> >
> > > >> > http://www.dtcenter.org/met/users/support/online_tutorial/
> > > >> > METv6.0/tutorial.php?name=compilation&category=configure
> > > >> >
> > > >> > and make sure that you have the environment variables set
up
> > correctly
> > > >> for
> > > >> > your system.
> > > >> >
> > > >> > Then, please run "make clean" and then run configure again,
> followed
> > > by
> > > >> > "make install", and if that was successful, then please run
"make
> > > test".
> > > >> > You can continue on from that page in the tutorial to the
> following
> > > >> pages
> > > >> > until you have met-6.0 installed successfully.
> > > >> >
> > > >> > Please give that a try and let us know if you encounter any
more
> > > >> problems
> > > >> > or if you get a successful install.
> > > >> >
> > > >> > Julie
> > > >> >
> > > >> >
> > > >> >
> > > >> >
> > > >> >
> > > >> > On Sun, Apr 30, 2017 at 5:09 PM, Yating Zhang via RT <
> > > met_help at ucar.edu
> > > >> >
> > > >> > wrote:
> > > >> >
> > > >> > >
> > > >> > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> > > >> > >
> > > >> > > Hi Julie,
> > > >> > >
> > > >> > > Thank you for you reply. I think there is no problem with
these
> > > >> > libraries.
> > > >> > > Could you share the code for compiling the MET6.0? Have
you set
> > any
> > > >> path
> > > >> > > for the include file for netCDF? I have added the library
path,
> > > >> because I
> > > >> > > don't have the *.so files.
> > > >> > >
> > > >> > > I attached the two files for the config.log and
> make_install.log,
> > > >> > > respectively.
> > > >> > >
> > > >> > > Thanks,
> > > >> > >
> > > >> > > Yating
> > > >> > >
> > > >> > >
> > > >> > >
> > > >> > > On Thu, Apr 27, 2017 at 3:07 PM, Julie Prestopnik via RT
<
> > > >> > > met_help at ucar.edu>
> > > >> > > wrote:
> > > >> > >
> > > >> > > > Hi Yating.
> > > >> > > >
> > > >> > > > I am sorry to hear that you are still having difficulty
with
> the
> > > >> netcdf
> > > >> > > > library files.   Perhaps it would help if I gave more
detailed
> > > >> > > instructions
> > > >> > > > on how I compiled specific versions of the HDF5 (first,
I
> > > installed
> > > >> > > zlib),
> > > >> > > > NetCDF C, and NetCDF CXX packages (below).
> > > >> > > >
> > > >> > > > I set the following environment variables:
> > > >> > > >
> > > >> > > > export iprefix=/usrx/local/dev/met/met-
6.0/external_libs
> > > >> > > > export libdir=/usrx/local/dev/met/met-
6.0/external_libs/lib
> > > >> > > > export incdir=/usrx/local/dev/met/
> met-6.0/external_libs/include
> > > >> > > >
> > > >> > > >
> > > >> > > > and then did the following:
> > > >> > > >
> > > >> > > > Download the zlib package:
> > > >> > > > http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-
1.2.6.tar
> > > >> > > > Unpack the package (tar -xvf)
> > > >> > > > cd zlib-1.2.6
> > > >> > > > ./configure --prefix=$iprefix/ --enable-shared
> > > >> > > > make; make install
> > > >> > > >
> > > >> > > > Download the HDF5 package:
> > > >> > > > https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-
1.8/
> > > >> > > > hdf5-1.8.18/src/hdf5-1.8.18.tar.gz
> > > >> > > > Unpack the package (tar -xvf)
> > > >> > > > ./configure --prefix=$iprefix --with-zlib=$libdir
> > > LDFLAGS=-L$libdir
> > > >> > > > CPPFLAGS=-I$incdir
> > > >> > > > make
> > > >> > > > make check
> > > >> > > > make install
> > > >> > > >
> > > >> > > > Download the NetCDF C package:
> > > >> > > > ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-
4.4.1.1.zip
> > > >> > > > Unpack the package (unzip)
> > > >> > > > cd netcdf-4.4.1.1
> > > >> > > > export FC=''
> > > >> > > > export F90=''
> > > >> > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir
> > CPPFLAGS=-I$incdir
> > > >> > > > make; make install
> > > >> > > >
> > > >> > > > Download the NetCDF CXX package:
> > > >> > > > https://www.gfd-dennou.org/arch/netcdf/unidata-mirror/
> > > >> > > > netcdf-cxx4-4.3.0.tar.gz
> > > >> > > > Unpack the package (tar -zxf)
> > > >> > > > cd netcdf-cxx4-4.3.0
> > > >> > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir
> > CPPFLAGS=-I$incdir
> > > >> > > > make; make install
> > > >> > > >
> > > >> > > >
> > > >> > > > Please give those a try and let me know how it works
out.
> > Please
> > > >> let
> > > >> > me
> > > >> > > > know if you have any questions about these
instructions.
> > > >> > > >
> > > >> > > > Thanks,
> > > >> > > > Julie
> > > >> > > >
> > > >> > > >
> > > >> > > > On Thu, Apr 27, 2017 at 12:47 PM, Yating Zhang via RT <
> > > >> > met_help at ucar.edu
> > > >> > > >
> > > >> > > > wrote:
> > > >> > > >
> > > >> > > > >
> > > >> > > > > <URL: https://rt.rap.ucar.edu/rt/
> Ticket/Display.html?id=80272
> > >
> > > >> > > > >
> > > >> > > > > Hi Julie,
> > > >> > > > >
> > > >> > > > > Thank you for your reply. I don't have the
> > > >> > > *$MET_NETCDF/lib/libnetcdf.so*
> > > >> > > > > and $MET_NETCDF/lib/libnetcdf_c++.*so*. I recompiled
> NetCDF C
> > > and
> > > >> > > NetCDF
> > > >> > > > > C++, but the two were still not generated.
> > > >> > > > >
> > > >> > > > > Thanks,
> > > >> > > > >
> > > >> > > > > Yating
> > > >> > > > >
> > > >> > > > > On Wed, Apr 26, 2017 at 4:52 PM, Julie Prestopnik via
RT <
> > > >> > > > > met_help at ucar.edu>
> > > >> > > > > wrote:
> > > >> > > > >
> > > >> > > > > > Thank you, Yating.
> > > >> > > > > >
> > > >> > > > > > I'm sorry to hear that you are having problems with
> met-6.0.
> > > >> > > > > >
> > > >> > > > > > I see the following error in your make_test.log
file:
> > > >> > > > > >
> > > >> > > > > > fatal error: netcdf: No such file or directory
> > > >> > > > > >  #include <netcdf>
> > > >> > > > > >
> > > >> > > > > > It looks like MET is having a difficult time
finding the
> > file
> > > >> > > "netcdf",
> > > >> > > > > > which is included in the NetCDF-CXX installation.
I see
> in
> > > your
> > > >> > > > > config.log
> > > >> > > > > > that you have defined MET_NETCDF to be
> > > >> > > > > > /Users/yating/Desktop/MET_LIB/netcdf_C.
> > > >> > > > > >
> > > >> > > > > > Here is a quick reference checklist for NetCDF4C++
> > > installation
> > > >> > that
> > > >> > > > you
> > > >> > > > > > can use to see if you have the necessary files:
> > > >> > > > > >
> > > >> > > > > > Files for NetCDF4 C:
> > > >> > > > > >
> > > >> > > > > > $MET_NETCDF/include/netcdf.h
> > > >> > > > > > $MET_NETCDF/lib/libnetcdf.a
> > > >> > > > > > $MET_NETCDF/lib/libnetcdf.so
> > > >> > > > > >
> > > >> > > > > > Files for NetCDF4 C++:
> > > >> > > > > >
> > > >> > > > > > $MET_NETCDF/include/netcdf
> > > >> > > > > > $MET_NETCDF/lib/libnetcdf_c++4.a
> > > >> > > > > > $MET_NETCDF/lib/libnetcdf_c++4.so
> > > >> > > > > >
> > > >> > > > > > Files for NetCDF3 C++ (not required, if --disabled-
netcdf4
> > is
> > > >> > > > activated):
> > > >> > > > > >
> > > >> > > > > > $MET_NETCDF/include/netcdf.hh
> > > >> > > > > > $MET_NETCDF/lib/libnetcdf_c++.a
> > > >> > > > > > $MET_NETCDF/lib/libnetcdf_c++.so
> > > >> > > > > >
> > > >> > > > > > Please take a look and see if those files exist and
let me
> > > know.
> > > >> > If
> > > >> > > > they
> > > >> > > > > > do exist, could you please also attach your
> make_install.log
> > > >> file
> > > >> > for
> > > >> > > > me?
> > > >> > > > > >
> > > >> > > > > > Thanks!
> > > >> > > > > >
> > > >> > > > > > Julie
> > > >> > > > > >
> > > >> > > > > >
> > > >> > > > > > On Wed, Apr 26, 2017 at 1:53 PM, Yating Zhang via
RT <
> > > >> > > > met_help at ucar.edu>
> > > >> > > > > > wrote:
> > > >> > > > > >
> > > >> > > > > > >
> > > >> > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> > > Ticket/Display.html?id=80272
> > > >> >
> > > >> > > > > > >
> > > >> > > > > > > Hi Julie,
> > > >> > > > > > >
> > > >> > > > > > > I have completed the registration.
> > > >> > > > > > >
> > > >> > > > > > > Best,
> > > >> > > > > > >
> > > >> > > > > > > Yating
> > > >> > > > > > >
> > > >> > > > > > > On Wed, Apr 26, 2017 at 1:05 PM, Julie Prestopnik
via
> RT <
> > > >> > > > > > > met_help at ucar.edu>
> > > >> > > > > > > wrote:
> > > >> > > > > > >
> > > >> > > > > > > > I'd be happy to try to help you with this
issue, but
> we
> > > can
> > > >> > only
> > > >> > > > > > provide
> > > >> > > > > > > > direct support to registered users of MET.  We
do this
> > to
> > > >> > ensure
> > > >> > > > that
> > > >> > > > > > we
> > > >> > > > > > > > remain in compliance with U.S. export control
laws.
> You
> > > can
> > > >> > fill
> > > >> > > > out
> > > >> > > > > > the
> > > >> > > > > > > > registration form here:
> > > >> > > > > > > >    http://www.dtcenter.org/met/
> > users/downloads/index.php
> > > >> > > > > > > > Just enter your email address and hit enter.
That
> > should
> > > >> take
> > > >> > > you
> > > >> > > > > to
> > > >> > > > > > > the
> > > >> > > > > > > > registration page.
> > > >> > > > > > > >
> > > >> > > > > > > > Please write me back once you've filled that
out, and
> I
> > > >> should
> > > >> > be
> > > >> > > > > able
> > > >> > > > > > to
> > > >> > > > > > > > offer more help.
> > > >> > > > > > > >
> > > >> > > > > > > > Thanks,
> > > >> > > > > > > > Julie
> > > >> > > > > > > >
> > > >> > > > > > > > On Wed, Apr 26, 2017 at 10:51 AM, Yating Zhang
via RT
> <
> > > >> > > > > > met_help at ucar.edu
> > > >> > > > > > > >
> > > >> > > > > > > > wrote:
> > > >> > > > > > > >
> > > >> > > > > > > > >
> > > >> > > > > > > > > Wed Apr 26 10:51:09 2017: Request 80272 was
acted
> > upon.
> > > >> > > > > > > > > Transaction: Ticket created by
> > > zhyating at terpmail.umd.edu
> > > >> > > > > > > > >        Queue: met_help
> > > >> > > > > > > > >      Subject: MET 6.0 Compiling Issue
> > > >> > > > > > > > >        Owner: Nobody
> > > >> > > > > > > > >   Requestors: zhyating at terpmail.umd.edu
> > > >> > > > > > > > >       Status: new
> > > >> > > > > > > > >  Ticket <URL: https://rt.rap.ucar.edu/rt/Tic
> > > >> > > > > > ket/Display.html?id=80272
> > > >> > > > > > > >
> > > >> > > > > > > > >
> > > >> > > > > > > > >
> > > >> > > > > > > > > Hi,
> > > >> > > > > > > > >
> > > >> > > > > > > > > I have troubles in compiling the MET 6.0
> > > >> > > > (met-6.0_bugfix.20170419)
> > > >> > > > > on
> > > >> > > > > > > > macOS
> > > >> > > > > > > > > Sierra. I have installed the libraries NetCDF
C,
> > NetCDF
> > > >> C++,
> > > >> > > > Zlib,
> > > >> > > > > > > HDF5,
> > > >> > > > > > > > > BUFRLIB following the online tutorial.
> > > >> > > > > > > > > http://www.dtcenter.org/met/us
> > > >> ers/support/online_tutorial/
> > > >> > > > > > > > > METv6.0/tutorial.php?name=
> > compilation&category=req_libs
> > > >> > > > > > > > >
> > > >> > > > > > > > > I checked every library and they all passed
the
> > tests. I
> > > >> can
> > > >> > > > > install
> > > >> > > > > > > MET
> > > >> > > > > > > > > 6.0 share file without executable files
generated. I
> > > >> attached
> > > >> > > the
> > > >> > > > > > > > documents
> > > >> > > > > > > > > for make_test.log and config.log for your
reference,
> > as
> > > >> well
> > > >> > as
> > > >> > > > the
> > > >> > > > > > > code
> > > >> > > > > > > > I
> > > >> > > > > > > > > used to compile (GUI compiler).  The NetCDF
C,
> NetCDF
> > > C++
> > > >> are
> > > >> > > > > > installed
> > > >> > > > > > > > in
> > > >> > > > > > > > > netcdf_C file.
> > > >> > > > > > > > >
> > > >> > > > > > > > > *export CC=gcc*
> > > >> > > > > > > > >
> > > >> > > > > > > > > *export CXX=g++*
> > > >> > > > > > > > >
> > > >> > > > > > > > > *export F77=gfortran*
> > > >> > > > > > > > >
> > > >> > > > > > > > > *export MET_NETCDF=/Users/yating/Deskt
> > > >> op/MET_LIB/netcdf_C*
> > > >> > > > > > > > >
> > > >> > > > > > > > > *export
MET_HDF5=/Users/yating/Desktop/MET_LIB/hdf5
> *
> > > >> > > > > > > > >
> > > >> > > > > > > > > *export MET_BUFR=/Users/yating/
> > > Downloads/BUFRLIB_v10-2-3
> > > >> *
> > > >> > > > > > > > >
> > > >> > > > > > > > > *export
MET_GSL=/Users/yating/Desktop/MET_LIB/gsl *
> > > >> > > > > > > > >
> > > >> > > > > > > > > *./configure --prefix=/Users/yating/
> > > Desktop/MET_LIB/MET6*
> > > >> > > > > > > > >
> > > >> > > > > > > > >
> > > >> > > > > > > > > I have cleaned and recompiled several times
and
> > removed
> > > >> and
> > > >> > > > > > downloaded
> > > >> > > > > > > > the
> > > >> > > > > > > > > MET file, but it still had the same errors. I
will
> be
> > > >> > > appreciated
> > > >> > > > > if
> > > >> > > > > > > you
> > > >> > > > > > > > > can give me any help. Thank you for your
time.
> > > >> > > > > > > > >
> > > >> > > > > > > > > Thanks,
> > > >> > > > > > > > >
> > > >> > > > > > > > > Yating
> > > >> > > > > > > > >
> > > >> > > > > > > > >
> > > >> > > > > > > >
> > > >> > > > > > > >
> > > >> > > > > > >
> > > >> > > > > > >
> > > >> > > > > >
> > > >> > > > > >
> > > >> > > > >
> > > >> > > > >
> > > >> > > >
> > > >> > > >
> > > >> > >
> > > >> > >
> > > >> >
> > > >> >
> > > >>
> > > >>
> > > >
> > >
> > >
> >
> >
>
>

------------------------------------------------
Subject: MET 6.0 Compiling Issue
From: John Halley Gotway
Time: Mon May 15 16:17:03 2017

Yating,

Here's a link to the instructions we gave to users at a recent MET
tutorial
for running MET through docker.  These instructions are used for
running
the MET online tutorial.

Scroll to the bottom of this page for "Docker Container":

http://www.dtcenter.org/met/users/support/online_tutorial/ncwcp_201704.php

Hopefully this will get you up and running using the MET tools quickly
and
you can decide if they meet your needs.

Thanks,
John

On Mon, May 15, 2017 at 3:59 PM, Yating Zhang via RT
<met_help at ucar.edu>
wrote:

>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
>
> Hi John,
>
> I try to install MET to my Apple Pro with an operating system of
MacOS
> Sierra. I am not sure if the biggest problem is the operating system
> itself. I have installed the required libraries and successfully
tested
> them. When it comes to compiling the MET6.0, many problems came out.
I
> searched the solutions on Internet, but found they are too
complicated or
> out of date.
>
> I don't have an access to Linux, but I can install docker on my
windows
> laptop. Thank you for your suggestion.
>
> Thanks,
>
> Yating
>
> On Mon, May 15, 2017 at 1:15 PM, John Halley Gotway via RT <
> met_help at ucar.edu> wrote:
>
> > Hello Yating,
> >
> > I see that you've been corresponding with Julie about getting MET
> > compiled.  We realize that getting MET compiled can be
frustrating.  I'm
> > wondering where you're trying to install it?  Is it on a Linux
machine
> or a
> > laptop?
> >
> > We have recently had success providing pre-compiled versions of
MET
> through
> > docker containers.  If you happen to be using a laptop on which
you could
> > install the docker software, you could easily install MET version
6.0 as
> a
> > docker image.
> >
> > Thanks,
> > John Halley Gotway
> >
> > On Mon, May 15, 2017 at 10:50 AM, Yating Zhang via RT
<met_help at ucar.edu
> >
> > wrote:
> >
> > >
> > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> > >
> > > Hi Julie,
> > >
> > > I am sorry that I haven't worked it out, but I am really tired
with the
> > > installation. I am trying to use other software instead. I know
MET is
> a
> > > very powerful software package and you are willing to help me
out, so I
> > may
> > > seek your help in the future when I have to use the MET for some
> > research.
> > >
> > > Thank you for all your helps.
> > >
> > > Best Wishes,
> > >
> > > Yating
> > >
> > > On Mon, May 15, 2017 at 11:38 AM, Julie Prestopnik via RT <
> > > met_help at ucar.edu
> > > > wrote:
> > >
> > > > Hi.  I just wanted to follow up.  Were able to get MET
successfully
> > > > installed?
> > > >
> > > > Julie
> > > >
> > > > On Mon, May 1, 2017 at 12:39 PM, Julie Prestopnik
<jpresto at ucar.edu>
> > > > wrote:
> > > >
> > > > > Hi Yating.
> > > > >
> > > > > While I see that this line:
> > > > >
> > > > > configure:4849: g++ -g /Users/yating/Desktop/MET_LIB/
> > netcdf_C/include
> > > > > -I${MET_NETCDF}/include -I${MET_HDF5}/include
-I${MET_GSL}/include
> > > > -DBLOCK4
> > > > > -DMET_BASE="\"$(pkgdatadir)\""  -L${MET_NETCDF}/lib
> -L${MET_HDF5}/lib
> > > > > -L${MET_GSL}/lib -L${MET_BUFR}/lib conftest.cpp  >&5
> > > > >
> > > > > changed to:
> > > > >
> > > > > configure:4849: g++ -g /Users/yating/Desktop/MET_LIB/
> > netcdf_C/include
> > > > > -I/Users/yating/Desktop/MET_LIB/netcdf_C/include
> > > > > -I/Users/yating/Desktop/MET_LIB/hdf5/include
> > > > -I/Users/yating/Desktop/MET_LIB/gsl/include
> > > > > -DBLOCK4 -DMET_BASE="\"$(pkgdatadir)\""
> -L/Users/yating/Desktop/MET_
> > > > LIB/netcdf_C/lib
> > > > > -L/Users/yating/Desktop/MET_LIB/hdf5/lib
> > -L/Users/yating/Desktop/MET_
> > > > LIB/gsl/lib
> > > > > -L/Users/yating/Downloads/BUFRLIB_v10-2-3 conftest.cpp  >&5
> > > > >
> > > > > and these warnings went away:
> > > > >
> > > > > ld: warning: directory not found for option '-
L${MET_NETCDF}/lib'
> > > > > ld: warning: directory not found for option '-
L${MET_HDF5}/lib'
> > > > > ld: warning: directory not found for option '-
L${MET_GSL}/lib'
> > > > > ld: warning: directory not found for option '-
L${MET_BUFR}/lib'
> > > > >
> > > > > but this problem still exists:
> > > > >
> > > > > ld: can't map file, errno=22 file
'/Users/yating/Desktop/MET_
> > > > LIB/netcdf_C/include'
> > > > > for architecture x86_64
> > > > >
> > > > > It looks like
"/Users/yating/Desktop/MET_LIB/netcdf_C/include" is
> > > > missing
> > > > > the "-I" before it.  I see that it is listed twice, once
with the
> > "-I"
> > > > and
> > > > > once without:
> > > > >
> > > > > configure:4849: g++ -g /Users/yating/Desktop/MET_LIB/
> > netcdf_C/include
> > > > > -I/Users/yating/Desktop/MET_LIB/netcdf_C/include  ...
> > > > >
> > > > > I think we need to get rid of that first one, without the "-
I".
> > > Perhaps
> > > > > you can check your environment variable CPPFLAGS  by running
"echo
> > > > > $CPPFLAGS" and reset it so that it only has that directory
listed
> > once,
> > > > > with the "-I".
> > > > >
> > > > > Please try fixing up your CPPFLAGS environment variable.
Then,
> > please
> > > > run
> > > > > "make clean" and then run configure again, followed by "make
> > install",
> > > > and
> > > > > if that was successful, then please run "make test".
Please let
> us
> > > know
> > > > > if you encounter any more problems or if you get a
successful
> > install.
> > > > >
> > > > >
> > > > > Thanks!
> > > > >
> > > > > Julie
> > > > >
> > > > >
> > > > > On Mon, May 1, 2017 at 12:16 PM, Yating Zhang via RT <
> > > met_help at ucar.edu>
> > > > > wrote:
> > > > >
> > > > >>
> > > > >> <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> > > > >>
> > > > >> Hi Julie,
> > > > >>
> > > > >> I updated the config.log. The next problem may be
associated with
> > > > >> environmental settings. I am searching answers from the
Internet,
> > but
> > > if
> > > > >> you have any answers or suggestions, please let me know.
> > > > >>
> > > > >> The code I used to configure the MET6.0 is as follows.
> > > > >>
> > > > >> export CC=gcc
> > > > >> export CXX=g++
> > > > >> export F77=gfortran
> > > > >> export
MET_NETCDFINC=/Users/yating/Desktop/MET_LIB/netcdf_C/
> include
> > > > >> export
MET_NETCDFLIB=/Users/yating/Desktop/MET_LIB/netcdf_C/lib
> > > > >> export
MET_HDF5INC=/Users/yating/Desktop/MET_LIB/hdf5/include
> > > > >> export MET_HDF5LIB=/Users/yating/Desktop/MET_LIB/hdf5/lib
> > > > >> export MET_BUFRLIB=/Users/yating/Downloads/BUFRLIB_v10-2-3
> > > > >> export MET_GSLINC=/Users/yating/Desktop/MET_LIB/gsl/include
> > > > >> export MET_GSLLIB=/Users/yating/Desktop/MET_LIB/gsl/lib
> > > > >> export
> > > > >>
LD_LIBRARY_PATH=/Users/yating/Desktop/MET_LIB/netcdf_C/lib:/
> > > > >> Users/yating/Desktop/MET_LIB/gsl/lib:${LD_LIBRARY_PATH}
> > > > >> CPPFLAGS=/Users/yating/Desktop/MET_LIB/netcdf_C/include
> ./configure
> > > > >> --prefix=/Users/yating/Desktop/MET_LIB/MET6
> > > > >>
> > > > >>
> > > > >> Thank you for all the helps,
> > > > >>
> > > > >> Yating
> > > > >>
> > > > >>
> > > > >> On Mon, May 1, 2017 at 11:27 AM, Julie Prestopnik via RT <
> > > > >> met_help at ucar.edu>
> > > > >> wrote:
> > > > >>
> > > > >> > Hi Yating.  I'm sorry to see that you are still having
problems
> > > > getting
> > > > >> > met-6.0 installed.
> > > > >> >
> > > > >> > From your config.log file, it looks like there might be a
> problem
> > at
> > > > the
> > > > >> > configure step:
> > > > >> >
> > > > >> > ld: warning: directory not found for option
> '-L${MET_NETCDF}/lib'
> > > > >> > ld: warning: directory not found for option '-
L${MET_HDF5}/lib'
> > > > >> > ld: warning: directory not found for option '-
L${MET_GSL}/lib'
> > > > >> > ld: warning: directory not found for option '-
L${MET_BUFR}/lib'
> > > > >> > ld: can't map file, errno=22 file
> > > > >> > '/Users/yating/Desktop/MET_LIB/netcdf_C/include' for
> architecture
> > > > >> x86_64
> > > > >> > collect2: error: ld returned 1 exit status
> > > > >> >
> > > > >> > Please take a look at this page of the online tutorial
for
> > met-6.0:
> > > > >> >
> > > > >> >
http://www.dtcenter.org/met/users/support/online_tutorial/
> > > > >> > METv6.0/tutorial.php?name=compilation&category=configure
> > > > >> >
> > > > >> > and make sure that you have the environment variables set
up
> > > correctly
> > > > >> for
> > > > >> > your system.
> > > > >> >
> > > > >> > Then, please run "make clean" and then run configure
again,
> > followed
> > > > by
> > > > >> > "make install", and if that was successful, then please
run
> "make
> > > > test".
> > > > >> > You can continue on from that page in the tutorial to the
> > following
> > > > >> pages
> > > > >> > until you have met-6.0 installed successfully.
> > > > >> >
> > > > >> > Please give that a try and let us know if you encounter
any more
> > > > >> problems
> > > > >> > or if you get a successful install.
> > > > >> >
> > > > >> > Julie
> > > > >> >
> > > > >> >
> > > > >> >
> > > > >> >
> > > > >> >
> > > > >> > On Sun, Apr 30, 2017 at 5:09 PM, Yating Zhang via RT <
> > > > met_help at ucar.edu
> > > > >> >
> > > > >> > wrote:
> > > > >> >
> > > > >> > >
> > > > >> > > <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272
> >
> > > > >> > >
> > > > >> > > Hi Julie,
> > > > >> > >
> > > > >> > > Thank you for you reply. I think there is no problem
with
> these
> > > > >> > libraries.
> > > > >> > > Could you share the code for compiling the MET6.0? Have
you
> set
> > > any
> > > > >> path
> > > > >> > > for the include file for netCDF? I have added the
library
> path,
> > > > >> because I
> > > > >> > > don't have the *.so files.
> > > > >> > >
> > > > >> > > I attached the two files for the config.log and
> > make_install.log,
> > > > >> > > respectively.
> > > > >> > >
> > > > >> > > Thanks,
> > > > >> > >
> > > > >> > > Yating
> > > > >> > >
> > > > >> > >
> > > > >> > >
> > > > >> > > On Thu, Apr 27, 2017 at 3:07 PM, Julie Prestopnik via
RT <
> > > > >> > > met_help at ucar.edu>
> > > > >> > > wrote:
> > > > >> > >
> > > > >> > > > Hi Yating.
> > > > >> > > >
> > > > >> > > > I am sorry to hear that you are still having
difficulty with
> > the
> > > > >> netcdf
> > > > >> > > > library files.   Perhaps it would help if I gave more
> detailed
> > > > >> > > instructions
> > > > >> > > > on how I compiled specific versions of the HDF5
(first, I
> > > > installed
> > > > >> > > zlib),
> > > > >> > > > NetCDF C, and NetCDF CXX packages (below).
> > > > >> > > >
> > > > >> > > > I set the following environment variables:
> > > > >> > > >
> > > > >> > > > export iprefix=/usrx/local/dev/met/met-
6.0/external_libs
> > > > >> > > > export libdir=/usrx/local/dev/met/met-
6.0/external_libs/lib
> > > > >> > > > export incdir=/usrx/local/dev/met/
> > met-6.0/external_libs/include
> > > > >> > > >
> > > > >> > > >
> > > > >> > > > and then did the following:
> > > > >> > > >
> > > > >> > > > Download the zlib package:
> > > > >> > > > http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/zlib-
1.2.6.tar
> > > > >> > > > Unpack the package (tar -xvf)
> > > > >> > > > cd zlib-1.2.6
> > > > >> > > > ./configure --prefix=$iprefix/ --enable-shared
> > > > >> > > > make; make install
> > > > >> > > >
> > > > >> > > > Download the HDF5 package:
> > > > >> > > > https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-
1.8/
> > > > >> > > > hdf5-1.8.18/src/hdf5-1.8.18.tar.gz
> > > > >> > > > Unpack the package (tar -xvf)
> > > > >> > > > ./configure --prefix=$iprefix --with-zlib=$libdir
> > > > LDFLAGS=-L$libdir
> > > > >> > > > CPPFLAGS=-I$incdir
> > > > >> > > > make
> > > > >> > > > make check
> > > > >> > > > make install
> > > > >> > > >
> > > > >> > > > Download the NetCDF C package:
> > > > >> > > > ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-
4.4.1.1.zip
> > > > >> > > > Unpack the package (unzip)
> > > > >> > > > cd netcdf-4.4.1.1
> > > > >> > > > export FC=''
> > > > >> > > > export F90=''
> > > > >> > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir
> > > CPPFLAGS=-I$incdir
> > > > >> > > > make; make install
> > > > >> > > >
> > > > >> > > > Download the NetCDF CXX package:
> > > > >> > > > https://www.gfd-dennou.org/arch/netcdf/unidata-
mirror/
> > > > >> > > > netcdf-cxx4-4.3.0.tar.gz
> > > > >> > > > Unpack the package (tar -zxf)
> > > > >> > > > cd netcdf-cxx4-4.3.0
> > > > >> > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir
> > > CPPFLAGS=-I$incdir
> > > > >> > > > make; make install
> > > > >> > > >
> > > > >> > > >
> > > > >> > > > Please give those a try and let me know how it works
out.
> > > Please
> > > > >> let
> > > > >> > me
> > > > >> > > > know if you have any questions about these
instructions.
> > > > >> > > >
> > > > >> > > > Thanks,
> > > > >> > > > Julie
> > > > >> > > >
> > > > >> > > >
> > > > >> > > > On Thu, Apr 27, 2017 at 12:47 PM, Yating Zhang via RT
<
> > > > >> > met_help at ucar.edu
> > > > >> > > >
> > > > >> > > > wrote:
> > > > >> > > >
> > > > >> > > > >
> > > > >> > > > > <URL: https://rt.rap.ucar.edu/rt/
> > Ticket/Display.html?id=80272
> > > >
> > > > >> > > > >
> > > > >> > > > > Hi Julie,
> > > > >> > > > >
> > > > >> > > > > Thank you for your reply. I don't have the
> > > > >> > > *$MET_NETCDF/lib/libnetcdf.so*
> > > > >> > > > > and $MET_NETCDF/lib/libnetcdf_c++.*so*. I
recompiled
> > NetCDF C
> > > > and
> > > > >> > > NetCDF
> > > > >> > > > > C++, but the two were still not generated.
> > > > >> > > > >
> > > > >> > > > > Thanks,
> > > > >> > > > >
> > > > >> > > > > Yating
> > > > >> > > > >
> > > > >> > > > > On Wed, Apr 26, 2017 at 4:52 PM, Julie Prestopnik
via RT <
> > > > >> > > > > met_help at ucar.edu>
> > > > >> > > > > wrote:
> > > > >> > > > >
> > > > >> > > > > > Thank you, Yating.
> > > > >> > > > > >
> > > > >> > > > > > I'm sorry to hear that you are having problems
with
> > met-6.0.
> > > > >> > > > > >
> > > > >> > > > > > I see the following error in your make_test.log
file:
> > > > >> > > > > >
> > > > >> > > > > > fatal error: netcdf: No such file or directory
> > > > >> > > > > >  #include <netcdf>
> > > > >> > > > > >
> > > > >> > > > > > It looks like MET is having a difficult time
finding the
> > > file
> > > > >> > > "netcdf",
> > > > >> > > > > > which is included in the NetCDF-CXX installation.
I see
> > in
> > > > your
> > > > >> > > > > config.log
> > > > >> > > > > > that you have defined MET_NETCDF to be
> > > > >> > > > > > /Users/yating/Desktop/MET_LIB/netcdf_C.
> > > > >> > > > > >
> > > > >> > > > > > Here is a quick reference checklist for
NetCDF4C++
> > > > installation
> > > > >> > that
> > > > >> > > > you
> > > > >> > > > > > can use to see if you have the necessary files:
> > > > >> > > > > >
> > > > >> > > > > > Files for NetCDF4 C:
> > > > >> > > > > >
> > > > >> > > > > > $MET_NETCDF/include/netcdf.h
> > > > >> > > > > > $MET_NETCDF/lib/libnetcdf.a
> > > > >> > > > > > $MET_NETCDF/lib/libnetcdf.so
> > > > >> > > > > >
> > > > >> > > > > > Files for NetCDF4 C++:
> > > > >> > > > > >
> > > > >> > > > > > $MET_NETCDF/include/netcdf
> > > > >> > > > > > $MET_NETCDF/lib/libnetcdf_c++4.a
> > > > >> > > > > > $MET_NETCDF/lib/libnetcdf_c++4.so
> > > > >> > > > > >
> > > > >> > > > > > Files for NetCDF3 C++ (not required, if
> --disabled-netcdf4
> > > is
> > > > >> > > > activated):
> > > > >> > > > > >
> > > > >> > > > > > $MET_NETCDF/include/netcdf.hh
> > > > >> > > > > > $MET_NETCDF/lib/libnetcdf_c++.a
> > > > >> > > > > > $MET_NETCDF/lib/libnetcdf_c++.so
> > > > >> > > > > >
> > > > >> > > > > > Please take a look and see if those files exist
and let
> me
> > > > know.
> > > > >> > If
> > > > >> > > > they
> > > > >> > > > > > do exist, could you please also attach your
> > make_install.log
> > > > >> file
> > > > >> > for
> > > > >> > > > me?
> > > > >> > > > > >
> > > > >> > > > > > Thanks!
> > > > >> > > > > >
> > > > >> > > > > > Julie
> > > > >> > > > > >
> > > > >> > > > > >
> > > > >> > > > > > On Wed, Apr 26, 2017 at 1:53 PM, Yating Zhang via
RT <
> > > > >> > > > met_help at ucar.edu>
> > > > >> > > > > > wrote:
> > > > >> > > > > >
> > > > >> > > > > > >
> > > > >> > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> > > > Ticket/Display.html?id=80272
> > > > >> >
> > > > >> > > > > > >
> > > > >> > > > > > > Hi Julie,
> > > > >> > > > > > >
> > > > >> > > > > > > I have completed the registration.
> > > > >> > > > > > >
> > > > >> > > > > > > Best,
> > > > >> > > > > > >
> > > > >> > > > > > > Yating
> > > > >> > > > > > >
> > > > >> > > > > > > On Wed, Apr 26, 2017 at 1:05 PM, Julie
Prestopnik via
> > RT <
> > > > >> > > > > > > met_help at ucar.edu>
> > > > >> > > > > > > wrote:
> > > > >> > > > > > >
> > > > >> > > > > > > > I'd be happy to try to help you with this
issue, but
> > we
> > > > can
> > > > >> > only
> > > > >> > > > > > provide
> > > > >> > > > > > > > direct support to registered users of MET.
We do
> this
> > > to
> > > > >> > ensure
> > > > >> > > > that
> > > > >> > > > > > we
> > > > >> > > > > > > > remain in compliance with U.S. export control
laws.
> > You
> > > > can
> > > > >> > fill
> > > > >> > > > out
> > > > >> > > > > > the
> > > > >> > > > > > > > registration form here:
> > > > >> > > > > > > >    http://www.dtcenter.org/met/
> > > users/downloads/index.php
> > > > >> > > > > > > > Just enter your email address and hit enter.
That
> > > should
> > > > >> take
> > > > >> > > you
> > > > >> > > > > to
> > > > >> > > > > > > the
> > > > >> > > > > > > > registration page.
> > > > >> > > > > > > >
> > > > >> > > > > > > > Please write me back once you've filled that
out,
> and
> > I
> > > > >> should
> > > > >> > be
> > > > >> > > > > able
> > > > >> > > > > > to
> > > > >> > > > > > > > offer more help.
> > > > >> > > > > > > >
> > > > >> > > > > > > > Thanks,
> > > > >> > > > > > > > Julie
> > > > >> > > > > > > >
> > > > >> > > > > > > > On Wed, Apr 26, 2017 at 10:51 AM, Yating
Zhang via
> RT
> > <
> > > > >> > > > > > met_help at ucar.edu
> > > > >> > > > > > > >
> > > > >> > > > > > > > wrote:
> > > > >> > > > > > > >
> > > > >> > > > > > > > >
> > > > >> > > > > > > > > Wed Apr 26 10:51:09 2017: Request 80272 was
acted
> > > upon.
> > > > >> > > > > > > > > Transaction: Ticket created by
> > > > zhyating at terpmail.umd.edu
> > > > >> > > > > > > > >        Queue: met_help
> > > > >> > > > > > > > >      Subject: MET 6.0 Compiling Issue
> > > > >> > > > > > > > >        Owner: Nobody
> > > > >> > > > > > > > >   Requestors: zhyating at terpmail.umd.edu
> > > > >> > > > > > > > >       Status: new
> > > > >> > > > > > > > >  Ticket <URL:
https://rt.rap.ucar.edu/rt/Tic
> > > > >> > > > > > ket/Display.html?id=80272
> > > > >> > > > > > > >
> > > > >> > > > > > > > >
> > > > >> > > > > > > > >
> > > > >> > > > > > > > > Hi,
> > > > >> > > > > > > > >
> > > > >> > > > > > > > > I have troubles in compiling the MET 6.0
> > > > >> > > > (met-6.0_bugfix.20170419)
> > > > >> > > > > on
> > > > >> > > > > > > > macOS
> > > > >> > > > > > > > > Sierra. I have installed the libraries
NetCDF C,
> > > NetCDF
> > > > >> C++,
> > > > >> > > > Zlib,
> > > > >> > > > > > > HDF5,
> > > > >> > > > > > > > > BUFRLIB following the online tutorial.
> > > > >> > > > > > > > > http://www.dtcenter.org/met/us
> > > > >> ers/support/online_tutorial/
> > > > >> > > > > > > > > METv6.0/tutorial.php?name=
> > > compilation&category=req_libs
> > > > >> > > > > > > > >
> > > > >> > > > > > > > > I checked every library and they all passed
the
> > > tests. I
> > > > >> can
> > > > >> > > > > install
> > > > >> > > > > > > MET
> > > > >> > > > > > > > > 6.0 share file without executable files
> generated. I
> > > > >> attached
> > > > >> > > the
> > > > >> > > > > > > > documents
> > > > >> > > > > > > > > for make_test.log and config.log for your
> reference,
> > > as
> > > > >> well
> > > > >> > as
> > > > >> > > > the
> > > > >> > > > > > > code
> > > > >> > > > > > > > I
> > > > >> > > > > > > > > used to compile (GUI compiler).  The NetCDF
C,
> > NetCDF
> > > > C++
> > > > >> are
> > > > >> > > > > > installed
> > > > >> > > > > > > > in
> > > > >> > > > > > > > > netcdf_C file.
> > > > >> > > > > > > > >
> > > > >> > > > > > > > > *export CC=gcc*
> > > > >> > > > > > > > >
> > > > >> > > > > > > > > *export CXX=g++*
> > > > >> > > > > > > > >
> > > > >> > > > > > > > > *export F77=gfortran*
> > > > >> > > > > > > > >
> > > > >> > > > > > > > > *export MET_NETCDF=/Users/yating/Deskt
> > > > >> op/MET_LIB/netcdf_C*
> > > > >> > > > > > > > >
> > > > >> > > > > > > > > *export MET_HDF5=/Users/yating/
> Desktop/MET_LIB/hdf5
> > *
> > > > >> > > > > > > > >
> > > > >> > > > > > > > > *export MET_BUFR=/Users/yating/
> > > > Downloads/BUFRLIB_v10-2-3
> > > > >> *
> > > > >> > > > > > > > >
> > > > >> > > > > > > > > *export
MET_GSL=/Users/yating/Desktop/MET_LIB/gsl
> *
> > > > >> > > > > > > > >
> > > > >> > > > > > > > > *./configure --prefix=/Users/yating/
> > > > Desktop/MET_LIB/MET6*
> > > > >> > > > > > > > >
> > > > >> > > > > > > > >
> > > > >> > > > > > > > > I have cleaned and recompiled several times
and
> > > removed
> > > > >> and
> > > > >> > > > > > downloaded
> > > > >> > > > > > > > the
> > > > >> > > > > > > > > MET file, but it still had the same errors.
I will
> > be
> > > > >> > > appreciated
> > > > >> > > > > if
> > > > >> > > > > > > you
> > > > >> > > > > > > > > can give me any help. Thank you for your
time.
> > > > >> > > > > > > > >
> > > > >> > > > > > > > > Thanks,
> > > > >> > > > > > > > >
> > > > >> > > > > > > > > Yating
> > > > >> > > > > > > > >
> > > > >> > > > > > > > >
> > > > >> > > > > > > >
> > > > >> > > > > > > >
> > > > >> > > > > > >
> > > > >> > > > > > >
> > > > >> > > > > >
> > > > >> > > > > >
> > > > >> > > > >
> > > > >> > > > >
> > > > >> > > >
> > > > >> > > >
> > > > >> > >
> > > > >> > >
> > > > >> >
> > > > >> >
> > > > >>
> > > > >>
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>

------------------------------------------------
Subject: MET 6.0 Compiling Issue
From: Yating Zhang
Time: Fri May 26 09:16:24 2017

Hi John,

I am able to run MET with the docker now. You are a genius to provide
such
a simple and quick way to access to MET. I really appreciate your time
and
helps.

Best,

Yating

On Mon, May 15, 2017 at 6:17 PM, John Halley Gotway via RT <
met_help at ucar.edu> wrote:

> Yating,
>
> Here's a link to the instructions we gave to users at a recent MET
tutorial
> for running MET through docker.  These instructions are used for
running
> the MET online tutorial.
>
> Scroll to the bottom of this page for "Docker Container":
>
>
http://www.dtcenter.org/met/users/support/online_tutorial/ncwcp_201704.php
>
> Hopefully this will get you up and running using the MET tools
quickly and
> you can decide if they meet your needs.
>
> Thanks,
> John
>
> On Mon, May 15, 2017 at 3:59 PM, Yating Zhang via RT
<met_help at ucar.edu>
> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> >
> > Hi John,
> >
> > I try to install MET to my Apple Pro with an operating system of
MacOS
> > Sierra. I am not sure if the biggest problem is the operating
system
> > itself. I have installed the required libraries and successfully
tested
> > them. When it comes to compiling the MET6.0, many problems came
out. I
> > searched the solutions on Internet, but found they are too
complicated or
> > out of date.
> >
> > I don't have an access to Linux, but I can install docker on my
windows
> > laptop. Thank you for your suggestion.
> >
> > Thanks,
> >
> > Yating
> >
> > On Mon, May 15, 2017 at 1:15 PM, John Halley Gotway via RT <
> > met_help at ucar.edu> wrote:
> >
> > > Hello Yating,
> > >
> > > I see that you've been corresponding with Julie about getting
MET
> > > compiled.  We realize that getting MET compiled can be
frustrating.
> I'm
> > > wondering where you're trying to install it?  Is it on a Linux
machine
> > or a
> > > laptop?
> > >
> > > We have recently had success providing pre-compiled versions of
MET
> > through
> > > docker containers.  If you happen to be using a laptop on which
you
> could
> > > install the docker software, you could easily install MET
version 6.0
> as
> > a
> > > docker image.
> > >
> > > Thanks,
> > > John Halley Gotway
> > >
> > > On Mon, May 15, 2017 at 10:50 AM, Yating Zhang via RT <
> met_help at ucar.edu
> > >
> > > wrote:
> > >
> > > >
> > > > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272
>
> > > >
> > > > Hi Julie,
> > > >
> > > > I am sorry that I haven't worked it out, but I am really tired
with
> the
> > > > installation. I am trying to use other software instead. I
know MET
> is
> > a
> > > > very powerful software package and you are willing to help me
out,
> so I
> > > may
> > > > seek your help in the future when I have to use the MET for
some
> > > research.
> > > >
> > > > Thank you for all your helps.
> > > >
> > > > Best Wishes,
> > > >
> > > > Yating
> > > >
> > > > On Mon, May 15, 2017 at 11:38 AM, Julie Prestopnik via RT <
> > > > met_help at ucar.edu
> > > > > wrote:
> > > >
> > > > > Hi.  I just wanted to follow up.  Were able to get MET
successfully
> > > > > installed?
> > > > >
> > > > > Julie
> > > > >
> > > > > On Mon, May 1, 2017 at 12:39 PM, Julie Prestopnik <
> jpresto at ucar.edu>
> > > > > wrote:
> > > > >
> > > > > > Hi Yating.
> > > > > >
> > > > > > While I see that this line:
> > > > > >
> > > > > > configure:4849: g++ -g /Users/yating/Desktop/MET_LIB/
> > > netcdf_C/include
> > > > > > -I${MET_NETCDF}/include -I${MET_HDF5}/include
> -I${MET_GSL}/include
> > > > > -DBLOCK4
> > > > > > -DMET_BASE="\"$(pkgdatadir)\""  -L${MET_NETCDF}/lib
> > -L${MET_HDF5}/lib
> > > > > > -L${MET_GSL}/lib -L${MET_BUFR}/lib conftest.cpp  >&5
> > > > > >
> > > > > > changed to:
> > > > > >
> > > > > > configure:4849: g++ -g /Users/yating/Desktop/MET_LIB/
> > > netcdf_C/include
> > > > > > -I/Users/yating/Desktop/MET_LIB/netcdf_C/include
> > > > > > -I/Users/yating/Desktop/MET_LIB/hdf5/include
> > > > > -I/Users/yating/Desktop/MET_LIB/gsl/include
> > > > > > -DBLOCK4 -DMET_BASE="\"$(pkgdatadir)\""
> > -L/Users/yating/Desktop/MET_
> > > > > LIB/netcdf_C/lib
> > > > > > -L/Users/yating/Desktop/MET_LIB/hdf5/lib
> > > -L/Users/yating/Desktop/MET_
> > > > > LIB/gsl/lib
> > > > > > -L/Users/yating/Downloads/BUFRLIB_v10-2-3 conftest.cpp
>&5
> > > > > >
> > > > > > and these warnings went away:
> > > > > >
> > > > > > ld: warning: directory not found for option '-
L${MET_NETCDF}/lib'
> > > > > > ld: warning: directory not found for option '-
L${MET_HDF5}/lib'
> > > > > > ld: warning: directory not found for option '-
L${MET_GSL}/lib'
> > > > > > ld: warning: directory not found for option '-
L${MET_BUFR}/lib'
> > > > > >
> > > > > > but this problem still exists:
> > > > > >
> > > > > > ld: can't map file, errno=22 file
'/Users/yating/Desktop/MET_
> > > > > LIB/netcdf_C/include'
> > > > > > for architecture x86_64
> > > > > >
> > > > > > It looks like
"/Users/yating/Desktop/MET_LIB/netcdf_C/include"
> is
> > > > > missing
> > > > > > the "-I" before it.  I see that it is listed twice, once
with the
> > > "-I"
> > > > > and
> > > > > > once without:
> > > > > >
> > > > > > configure:4849: g++ -g /Users/yating/Desktop/MET_LIB/
> > > netcdf_C/include
> > > > > > -I/Users/yating/Desktop/MET_LIB/netcdf_C/include  ...
> > > > > >
> > > > > > I think we need to get rid of that first one, without the
"-I".
> > > > Perhaps
> > > > > > you can check your environment variable CPPFLAGS  by
running
> "echo
> > > > > > $CPPFLAGS" and reset it so that it only has that directory
listed
> > > once,
> > > > > > with the "-I".
> > > > > >
> > > > > > Please try fixing up your CPPFLAGS environment variable.
Then,
> > > please
> > > > > run
> > > > > > "make clean" and then run configure again, followed by
"make
> > > install",
> > > > > and
> > > > > > if that was successful, then please run "make test".
Please let
> > us
> > > > know
> > > > > > if you encounter any more problems or if you get a
successful
> > > install.
> > > > > >
> > > > > >
> > > > > > Thanks!
> > > > > >
> > > > > > Julie
> > > > > >
> > > > > >
> > > > > > On Mon, May 1, 2017 at 12:16 PM, Yating Zhang via RT <
> > > > met_help at ucar.edu>
> > > > > > wrote:
> > > > > >
> > > > > >>
> > > > > >> <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=80272 >
> > > > > >>
> > > > > >> Hi Julie,
> > > > > >>
> > > > > >> I updated the config.log. The next problem may be
associated
> with
> > > > > >> environmental settings. I am searching answers from the
> Internet,
> > > but
> > > > if
> > > > > >> you have any answers or suggestions, please let me know.
> > > > > >>
> > > > > >> The code I used to configure the MET6.0 is as follows.
> > > > > >>
> > > > > >> export CC=gcc
> > > > > >> export CXX=g++
> > > > > >> export F77=gfortran
> > > > > >> export
MET_NETCDFINC=/Users/yating/Desktop/MET_LIB/netcdf_C/
> > include
> > > > > >> export
MET_NETCDFLIB=/Users/yating/Desktop/MET_LIB/netcdf_C/lib
> > > > > >> export
MET_HDF5INC=/Users/yating/Desktop/MET_LIB/hdf5/include
> > > > > >> export MET_HDF5LIB=/Users/yating/Desktop/MET_LIB/hdf5/lib
> > > > > >> export MET_BUFRLIB=/Users/yating/Downloads/BUFRLIB_v10-2-
3
> > > > > >> export
MET_GSLINC=/Users/yating/Desktop/MET_LIB/gsl/include
> > > > > >> export MET_GSLLIB=/Users/yating/Desktop/MET_LIB/gsl/lib
> > > > > >> export
> > > > > >>
LD_LIBRARY_PATH=/Users/yating/Desktop/MET_LIB/netcdf_C/lib:/
> > > > > >> Users/yating/Desktop/MET_LIB/gsl/lib:${LD_LIBRARY_PATH}
> > > > > >> CPPFLAGS=/Users/yating/Desktop/MET_LIB/netcdf_C/include
> > ./configure
> > > > > >> --prefix=/Users/yating/Desktop/MET_LIB/MET6
> > > > > >>
> > > > > >>
> > > > > >> Thank you for all the helps,
> > > > > >>
> > > > > >> Yating
> > > > > >>
> > > > > >>
> > > > > >> On Mon, May 1, 2017 at 11:27 AM, Julie Prestopnik via RT
<
> > > > > >> met_help at ucar.edu>
> > > > > >> wrote:
> > > > > >>
> > > > > >> > Hi Yating.  I'm sorry to see that you are still having
> problems
> > > > > getting
> > > > > >> > met-6.0 installed.
> > > > > >> >
> > > > > >> > From your config.log file, it looks like there might be
a
> > problem
> > > at
> > > > > the
> > > > > >> > configure step:
> > > > > >> >
> > > > > >> > ld: warning: directory not found for option
> > '-L${MET_NETCDF}/lib'
> > > > > >> > ld: warning: directory not found for option
> '-L${MET_HDF5}/lib'
> > > > > >> > ld: warning: directory not found for option '-
L${MET_GSL}/lib'
> > > > > >> > ld: warning: directory not found for option
> '-L${MET_BUFR}/lib'
> > > > > >> > ld: can't map file, errno=22 file
> > > > > >> > '/Users/yating/Desktop/MET_LIB/netcdf_C/include' for
> > architecture
> > > > > >> x86_64
> > > > > >> > collect2: error: ld returned 1 exit status
> > > > > >> >
> > > > > >> > Please take a look at this page of the online tutorial
for
> > > met-6.0:
> > > > > >> >
> > > > > >> >
http://www.dtcenter.org/met/users/support/online_tutorial/
> > > > > >> >
METv6.0/tutorial.php?name=compilation&category=configure
> > > > > >> >
> > > > > >> > and make sure that you have the environment variables
set up
> > > > correctly
> > > > > >> for
> > > > > >> > your system.
> > > > > >> >
> > > > > >> > Then, please run "make clean" and then run configure
again,
> > > followed
> > > > > by
> > > > > >> > "make install", and if that was successful, then please
run
> > "make
> > > > > test".
> > > > > >> > You can continue on from that page in the tutorial to
the
> > > following
> > > > > >> pages
> > > > > >> > until you have met-6.0 installed successfully.
> > > > > >> >
> > > > > >> > Please give that a try and let us know if you encounter
any
> more
> > > > > >> problems
> > > > > >> > or if you get a successful install.
> > > > > >> >
> > > > > >> > Julie
> > > > > >> >
> > > > > >> >
> > > > > >> >
> > > > > >> >
> > > > > >> >
> > > > > >> > On Sun, Apr 30, 2017 at 5:09 PM, Yating Zhang via RT <
> > > > > met_help at ucar.edu
> > > > > >> >
> > > > > >> > wrote:
> > > > > >> >
> > > > > >> > >
> > > > > >> > > <URL: https://rt.rap.ucar.edu/rt/
> Ticket/Display.html?id=80272
> > >
> > > > > >> > >
> > > > > >> > > Hi Julie,
> > > > > >> > >
> > > > > >> > > Thank you for you reply. I think there is no problem
with
> > these
> > > > > >> > libraries.
> > > > > >> > > Could you share the code for compiling the MET6.0?
Have you
> > set
> > > > any
> > > > > >> path
> > > > > >> > > for the include file for netCDF? I have added the
library
> > path,
> > > > > >> because I
> > > > > >> > > don't have the *.so files.
> > > > > >> > >
> > > > > >> > > I attached the two files for the config.log and
> > > make_install.log,
> > > > > >> > > respectively.
> > > > > >> > >
> > > > > >> > > Thanks,
> > > > > >> > >
> > > > > >> > > Yating
> > > > > >> > >
> > > > > >> > >
> > > > > >> > >
> > > > > >> > > On Thu, Apr 27, 2017 at 3:07 PM, Julie Prestopnik via
RT <
> > > > > >> > > met_help at ucar.edu>
> > > > > >> > > wrote:
> > > > > >> > >
> > > > > >> > > > Hi Yating.
> > > > > >> > > >
> > > > > >> > > > I am sorry to hear that you are still having
difficulty
> with
> > > the
> > > > > >> netcdf
> > > > > >> > > > library files.   Perhaps it would help if I gave
more
> > detailed
> > > > > >> > > instructions
> > > > > >> > > > on how I compiled specific versions of the HDF5
(first, I
> > > > > installed
> > > > > >> > > zlib),
> > > > > >> > > > NetCDF C, and NetCDF CXX packages (below).
> > > > > >> > > >
> > > > > >> > > > I set the following environment variables:
> > > > > >> > > >
> > > > > >> > > > export iprefix=/usrx/local/dev/met/met-
6.0/external_libs
> > > > > >> > > > export libdir=/usrx/local/dev/met/
> met-6.0/external_libs/lib
> > > > > >> > > > export incdir=/usrx/local/dev/met/
> > > met-6.0/external_libs/include
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > > > and then did the following:
> > > > > >> > > >
> > > > > >> > > > Download the zlib package:
> > > > > >> > > > http://www.nco.ncep.noaa.gov/
> pmb/codes/GRIB2/zlib-1.2.6.tar
> > > > > >> > > > Unpack the package (tar -xvf)
> > > > > >> > > > cd zlib-1.2.6
> > > > > >> > > > ./configure --prefix=$iprefix/ --enable-shared
> > > > > >> > > > make; make install
> > > > > >> > > >
> > > > > >> > > > Download the HDF5 package:
> > > > > >> > > >
https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/
> > > > > >> > > > hdf5-1.8.18/src/hdf5-1.8.18.tar.gz
> > > > > >> > > > Unpack the package (tar -xvf)
> > > > > >> > > > ./configure --prefix=$iprefix --with-zlib=$libdir
> > > > > LDFLAGS=-L$libdir
> > > > > >> > > > CPPFLAGS=-I$incdir
> > > > > >> > > > make
> > > > > >> > > > make check
> > > > > >> > > > make install
> > > > > >> > > >
> > > > > >> > > > Download the NetCDF C package:
> > > > > >> > > > ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-
4.4.1.1.zip
> > > > > >> > > > Unpack the package (unzip)
> > > > > >> > > > cd netcdf-4.4.1.1
> > > > > >> > > > export FC=''
> > > > > >> > > > export F90=''
> > > > > >> > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir
> > > > CPPFLAGS=-I$incdir
> > > > > >> > > > make; make install
> > > > > >> > > >
> > > > > >> > > > Download the NetCDF CXX package:
> > > > > >> > > > https://www.gfd-dennou.org/arch/netcdf/unidata-
mirror/
> > > > > >> > > > netcdf-cxx4-4.3.0.tar.gz
> > > > > >> > > > Unpack the package (tar -zxf)
> > > > > >> > > > cd netcdf-cxx4-4.3.0
> > > > > >> > > > ./configure --prefix=$iprefix LDFLAGS=-L$libdir
> > > > CPPFLAGS=-I$incdir
> > > > > >> > > > make; make install
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > > > Please give those a try and let me know how it
works out.
> > > > Please
> > > > > >> let
> > > > > >> > me
> > > > > >> > > > know if you have any questions about these
instructions.
> > > > > >> > > >
> > > > > >> > > > Thanks,
> > > > > >> > > > Julie
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > > > On Thu, Apr 27, 2017 at 12:47 PM, Yating Zhang via
RT <
> > > > > >> > met_help at ucar.edu
> > > > > >> > > >
> > > > > >> > > > wrote:
> > > > > >> > > >
> > > > > >> > > > >
> > > > > >> > > > > <URL: https://rt.rap.ucar.edu/rt/
> > > Ticket/Display.html?id=80272
> > > > >
> > > > > >> > > > >
> > > > > >> > > > > Hi Julie,
> > > > > >> > > > >
> > > > > >> > > > > Thank you for your reply. I don't have the
> > > > > >> > > *$MET_NETCDF/lib/libnetcdf.so*
> > > > > >> > > > > and $MET_NETCDF/lib/libnetcdf_c++.*so*. I
recompiled
> > > NetCDF C
> > > > > and
> > > > > >> > > NetCDF
> > > > > >> > > > > C++, but the two were still not generated.
> > > > > >> > > > >
> > > > > >> > > > > Thanks,
> > > > > >> > > > >
> > > > > >> > > > > Yating
> > > > > >> > > > >
> > > > > >> > > > > On Wed, Apr 26, 2017 at 4:52 PM, Julie Prestopnik
via
> RT <
> > > > > >> > > > > met_help at ucar.edu>
> > > > > >> > > > > wrote:
> > > > > >> > > > >
> > > > > >> > > > > > Thank you, Yating.
> > > > > >> > > > > >
> > > > > >> > > > > > I'm sorry to hear that you are having problems
with
> > > met-6.0.
> > > > > >> > > > > >
> > > > > >> > > > > > I see the following error in your make_test.log
file:
> > > > > >> > > > > >
> > > > > >> > > > > > fatal error: netcdf: No such file or directory
> > > > > >> > > > > >  #include <netcdf>
> > > > > >> > > > > >
> > > > > >> > > > > > It looks like MET is having a difficult time
finding
> the
> > > > file
> > > > > >> > > "netcdf",
> > > > > >> > > > > > which is included in the NetCDF-CXX
installation.  I
> see
> > > in
> > > > > your
> > > > > >> > > > > config.log
> > > > > >> > > > > > that you have defined MET_NETCDF to be
> > > > > >> > > > > > /Users/yating/Desktop/MET_LIB/netcdf_C.
> > > > > >> > > > > >
> > > > > >> > > > > > Here is a quick reference checklist for
NetCDF4C++
> > > > > installation
> > > > > >> > that
> > > > > >> > > > you
> > > > > >> > > > > > can use to see if you have the necessary files:
> > > > > >> > > > > >
> > > > > >> > > > > > Files for NetCDF4 C:
> > > > > >> > > > > >
> > > > > >> > > > > > $MET_NETCDF/include/netcdf.h
> > > > > >> > > > > > $MET_NETCDF/lib/libnetcdf.a
> > > > > >> > > > > > $MET_NETCDF/lib/libnetcdf.so
> > > > > >> > > > > >
> > > > > >> > > > > > Files for NetCDF4 C++:
> > > > > >> > > > > >
> > > > > >> > > > > > $MET_NETCDF/include/netcdf
> > > > > >> > > > > > $MET_NETCDF/lib/libnetcdf_c++4.a
> > > > > >> > > > > > $MET_NETCDF/lib/libnetcdf_c++4.so
> > > > > >> > > > > >
> > > > > >> > > > > > Files for NetCDF3 C++ (not required, if
> > --disabled-netcdf4
> > > > is
> > > > > >> > > > activated):
> > > > > >> > > > > >
> > > > > >> > > > > > $MET_NETCDF/include/netcdf.hh
> > > > > >> > > > > > $MET_NETCDF/lib/libnetcdf_c++.a
> > > > > >> > > > > > $MET_NETCDF/lib/libnetcdf_c++.so
> > > > > >> > > > > >
> > > > > >> > > > > > Please take a look and see if those files exist
and
> let
> > me
> > > > > know.
> > > > > >> > If
> > > > > >> > > > they
> > > > > >> > > > > > do exist, could you please also attach your
> > > make_install.log
> > > > > >> file
> > > > > >> > for
> > > > > >> > > > me?
> > > > > >> > > > > >
> > > > > >> > > > > > Thanks!
> > > > > >> > > > > >
> > > > > >> > > > > > Julie
> > > > > >> > > > > >
> > > > > >> > > > > >
> > > > > >> > > > > > On Wed, Apr 26, 2017 at 1:53 PM, Yating Zhang
via RT <
> > > > > >> > > > met_help at ucar.edu>
> > > > > >> > > > > > wrote:
> > > > > >> > > > > >
> > > > > >> > > > > > >
> > > > > >> > > > > > > <URL: https://rt.rap.ucar.edu/rt/
> > > > > Ticket/Display.html?id=80272
> > > > > >> >
> > > > > >> > > > > > >
> > > > > >> > > > > > > Hi Julie,
> > > > > >> > > > > > >
> > > > > >> > > > > > > I have completed the registration.
> > > > > >> > > > > > >
> > > > > >> > > > > > > Best,
> > > > > >> > > > > > >
> > > > > >> > > > > > > Yating
> > > > > >> > > > > > >
> > > > > >> > > > > > > On Wed, Apr 26, 2017 at 1:05 PM, Julie
Prestopnik
> via
> > > RT <
> > > > > >> > > > > > > met_help at ucar.edu>
> > > > > >> > > > > > > wrote:
> > > > > >> > > > > > >
> > > > > >> > > > > > > > I'd be happy to try to help you with this
issue,
> but
> > > we
> > > > > can
> > > > > >> > only
> > > > > >> > > > > > provide
> > > > > >> > > > > > > > direct support to registered users of MET.
We do
> > this
> > > > to
> > > > > >> > ensure
> > > > > >> > > > that
> > > > > >> > > > > > we
> > > > > >> > > > > > > > remain in compliance with U.S. export
control
> laws.
> > > You
> > > > > can
> > > > > >> > fill
> > > > > >> > > > out
> > > > > >> > > > > > the
> > > > > >> > > > > > > > registration form here:
> > > > > >> > > > > > > >    http://www.dtcenter.org/met/
> > > > users/downloads/index.php
> > > > > >> > > > > > > > Just enter your email address and hit
enter.
>  That
> > > > should
> > > > > >> take
> > > > > >> > > you
> > > > > >> > > > > to
> > > > > >> > > > > > > the
> > > > > >> > > > > > > > registration page.
> > > > > >> > > > > > > >
> > > > > >> > > > > > > > Please write me back once you've filled
that out,
> > and
> > > I
> > > > > >> should
> > > > > >> > be
> > > > > >> > > > > able
> > > > > >> > > > > > to
> > > > > >> > > > > > > > offer more help.
> > > > > >> > > > > > > >
> > > > > >> > > > > > > > Thanks,
> > > > > >> > > > > > > > Julie
> > > > > >> > > > > > > >
> > > > > >> > > > > > > > On Wed, Apr 26, 2017 at 10:51 AM, Yating
Zhang via
> > RT
> > > <
> > > > > >> > > > > > met_help at ucar.edu
> > > > > >> > > > > > > >
> > > > > >> > > > > > > > wrote:
> > > > > >> > > > > > > >
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > > Wed Apr 26 10:51:09 2017: Request 80272
was
> acted
> > > > upon.
> > > > > >> > > > > > > > > Transaction: Ticket created by
> > > > > zhyating at terpmail.umd.edu
> > > > > >> > > > > > > > >        Queue: met_help
> > > > > >> > > > > > > > >      Subject: MET 6.0 Compiling Issue
> > > > > >> > > > > > > > >        Owner: Nobody
> > > > > >> > > > > > > > >   Requestors: zhyating at terpmail.umd.edu
> > > > > >> > > > > > > > >       Status: new
> > > > > >> > > > > > > > >  Ticket <URL:
https://rt.rap.ucar.edu/rt/Tic
> > > > > >> > > > > > ket/Display.html?id=80272
> > > > > >> > > > > > > >
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > > Hi,
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > > I have troubles in compiling the MET 6.0
> > > > > >> > > > (met-6.0_bugfix.20170419)
> > > > > >> > > > > on
> > > > > >> > > > > > > > macOS
> > > > > >> > > > > > > > > Sierra. I have installed the libraries
NetCDF C,
> > > > NetCDF
> > > > > >> C++,
> > > > > >> > > > Zlib,
> > > > > >> > > > > > > HDF5,
> > > > > >> > > > > > > > > BUFRLIB following the online tutorial.
> > > > > >> > > > > > > > > http://www.dtcenter.org/met/us
> > > > > >> ers/support/online_tutorial/
> > > > > >> > > > > > > > > METv6.0/tutorial.php?name=
> > > > compilation&category=req_libs
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > > I checked every library and they all
passed the
> > > > tests. I
> > > > > >> can
> > > > > >> > > > > install
> > > > > >> > > > > > > MET
> > > > > >> > > > > > > > > 6.0 share file without executable files
> > generated. I
> > > > > >> attached
> > > > > >> > > the
> > > > > >> > > > > > > > documents
> > > > > >> > > > > > > > > for make_test.log and config.log for your
> > reference,
> > > > as
> > > > > >> well
> > > > > >> > as
> > > > > >> > > > the
> > > > > >> > > > > > > code
> > > > > >> > > > > > > > I
> > > > > >> > > > > > > > > used to compile (GUI compiler).  The
NetCDF C,
> > > NetCDF
> > > > > C++
> > > > > >> are
> > > > > >> > > > > > installed
> > > > > >> > > > > > > > in
> > > > > >> > > > > > > > > netcdf_C file.
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > > *export CC=gcc*
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > > *export CXX=g++*
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > > *export F77=gfortran*
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > > *export MET_NETCDF=/Users/yating/Deskt
> > > > > >> op/MET_LIB/netcdf_C*
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > > *export MET_HDF5=/Users/yating/
> > Desktop/MET_LIB/hdf5
> > > *
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > > *export MET_BUFR=/Users/yating/
> > > > > Downloads/BUFRLIB_v10-2-3
> > > > > >> *
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > > *export MET_GSL=/Users/yating/Desktop/
> MET_LIB/gsl
> > *
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > > *./configure --prefix=/Users/yating/
> > > > > Desktop/MET_LIB/MET6*
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > > I have cleaned and recompiled several
times and
> > > > removed
> > > > > >> and
> > > > > >> > > > > > downloaded
> > > > > >> > > > > > > > the
> > > > > >> > > > > > > > > MET file, but it still had the same
errors. I
> will
> > > be
> > > > > >> > > appreciated
> > > > > >> > > > > if
> > > > > >> > > > > > > you
> > > > > >> > > > > > > > > can give me any help. Thank you for your
time.
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > > Thanks,
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > > Yating
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > > >
> > > > > >> > > > > > > >
> > > > > >> > > > > > > >
> > > > > >> > > > > > >
> > > > > >> > > > > > >
> > > > > >> > > > > >
> > > > > >> > > > > >
> > > > > >> > > > >
> > > > > >> > > > >
> > > > > >> > > >
> > > > > >> > > >
> > > > > >> > >
> > > > > >> > >
> > > > > >> >
> > > > > >> >
> > > > > >>
> > > > > >>
> > > > > >
> > > > >
> > > > >
> > > >
> > > >
> > >
> > >
> >
> >
>
>

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