[Met_help] [rt.rap.ucar.edu #68716] History for Rscript for boxplots (UNCLASSIFIED)
John Halley Gotway via RT
met_help at ucar.edu
Fri Oct 3 12:26:24 MDT 2014
----------------------------------------------------------------
Initial Request
----------------------------------------------------------------
Classification: UNCLASSIFIED
Caveats: NONE
In APR of 2012, I successfully ran the script " plot_cnt.R" which I
downloaded from the DTC website. (Analysis scripts page). I was able to get
it running and interacted with John Halley Gotway to optimize the way it
runs for my data. For some reason, now I am getting an error when I run the
command "Rscript plot_cnt.R" in the command line positioned in the RGraphics
directory, it says "Rscript execution error: no such file of directory". I
verified paths to Rscript and R. I also tried "Rscript ./plot_cnt.R", but no
change. Do you have any suggestions on possible causes/fixes?
Thanks.
R/
John
Classification: UNCLASSIFIED
Caveats: NONE
----------------------------------------------------------------
Complete Ticket History
----------------------------------------------------------------
Subject: Rscript for boxplots (UNCLASSIFIED)
From: John Halley Gotway
Time: Wed Aug 20 16:45:09 2014
John,
Just to be clear, are you running these commands in the directory that
contains the "plot_cnt.R" file? You could try running using the full
path
that file:
Rscript /full/path/to/plot_cnt.R /full/path/to/*_cnt.txt
That script does write a temp file and an output file to current
directory. So you'll need write permission in the directory you're
running
it.
Looks like that version of the web has headers for METv3.0. We'll
need to
update those header for the upcoming version 5.0 release.
Thanks,
John
On Wed, Aug 20, 2014 at 4:08 PM, Raby, John W USA CIV via RT <
met_help at ucar.edu> wrote:
>
> Wed Aug 20 16:08:00 2014: Request 68716 was acted upon.
> Transaction: Ticket created by john.w.raby2.civ at mail.mil
> Queue: met_help
> Subject: Rscript for boxplots (UNCLASSIFIED)
> Owner: Nobody
> Requestors: john.w.raby2.civ at mail.mil
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
>
>
> Classification: UNCLASSIFIED
> Caveats: NONE
>
> In APR of 2012, I successfully ran the script " plot_cnt.R" which I
> downloaded from the DTC website. (Analysis scripts page). I was able
to get
> it running and interacted with John Halley Gotway to optimize the
way it
> runs for my data. For some reason, now I am getting an error when I
run
> the
> command "Rscript plot_cnt.R" in the command line positioned in the
> RGraphics
> directory, it says "Rscript execution error: no such file of
directory". I
> verified paths to Rscript and R. I also tried "Rscript
./plot_cnt.R", but
> no
> change. Do you have any suggestions on possible causes/fixes?
>
> Thanks.
>
> R/
> John
>
> Classification: UNCLASSIFIED
> Caveats: NONE
>
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #68716] Rscript for boxplots (UNCLASSIFIED)
From: Raby, John W USA CIV
Time: Thu Aug 21 07:30:18 2014
John -
Thanks for your response. I verified that I'm positioned in the
directory where the script is located and also just tried various ways
to specify the path and still doesn't work.
I noticed something odd about the paths to the software:
carson:jraby ~/RGraphics
> Rscript --verbose plot_cnt.R*
running
'/opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/R --slave --no-
restore --file
=plot_cnt.R'
Rscript execution error: No such file or directory
carson:jraby ~/RGraphics
> which Rscript
/home/rflaniga/opt/R/current/bin/Rscript
carson:jraby ~/RGraphics
Why does the "Rscript --verbose plot_cnt.R*" command generate the
statement "running /opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/R
--slave --no-restore --file
=plot_cnt.R' which appears to point to a different path than when I
use the "which" command which points to:
> which Rscript
/home/rflaniga/opt/R/current/bin/Rscript
carson:jraby ~/RGraphics
This may be the source of the problem. I'll work with my sysadm to get
his opinion. What is your take?
R/
John
________________________________________
From: John Halley Gotway via RT [met_help at ucar.edu]
Sent: Wednesday, August 20, 2014 4:45 PM
To: Raby, John W CIV USARMY ARL (US)
Subject: Re: [rt.rap.ucar.edu #68716] Rscript for boxplots
(UNCLASSIFIED)
John,
Just to be clear, are you running these commands in the directory that
contains the "plot_cnt.R" file? You could try running using the full
path
that file:
Rscript /full/path/to/plot_cnt.R /full/path/to/*_cnt.txt
That script does write a temp file and an output file to current
directory. So you'll need write permission in the directory you're
running
it.
Looks like that version of the web has headers for METv3.0. We'll
need to
update those header for the upcoming version 5.0 release.
Thanks,
John
On Wed, Aug 20, 2014 at 4:08 PM, Raby, John W USA CIV via RT <
met_help at ucar.edu> wrote:
>
> Wed Aug 20 16:08:00 2014: Request 68716 was acted upon.
> Transaction: Ticket created by john.w.raby2.civ at mail.mil
> Queue: met_help
> Subject: Rscript for boxplots (UNCLASSIFIED)
> Owner: Nobody
> Requestors: john.w.raby2.civ at mail.mil
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
>
>
> Classification: UNCLASSIFIED
> Caveats: NONE
>
> In APR of 2012, I successfully ran the script " plot_cnt.R" which I
> downloaded from the DTC website. (Analysis scripts page). I was able
to get
> it running and interacted with John Halley Gotway to optimize the
way it
> runs for my data. For some reason, now I am getting an error when I
run
> the
> command "Rscript plot_cnt.R" in the command line positioned in the
> RGraphics
> directory, it says "Rscript execution error: no such file of
directory". I
> verified paths to Rscript and R. I also tried "Rscript
./plot_cnt.R", but
> no
> change. Do you have any suggestions on possible causes/fixes?
>
> Thanks.
>
> R/
> John
>
> Classification: UNCLASSIFIED
> Caveats: NONE
>
>
>
>
------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #68716] Rscript for boxplots (UNCLASSIFIED)
From: Raby, John W USA CIV
Time: Thu Aug 21 09:14:53 2014
John -
My sysadm confirmed that the software path is there, but is checking
on some other possibilities.
I tried running a more complete command as follows:
Rscript --verbose plot_cnt.R
~/MET_PointStat_30WRF/results_m1o1/20*/*_cnt.txt -column ME -out
cnt_ME_plots_31dayWRF
running
'/opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/R --slave --no-
restore --file=plot_cnt.R --args
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_030000L_20110527_090000V_cnt.txt
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_060000L_20110527_120000V_cnt.txt
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_090000L_20110527_150000V_cnt.txt
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_120000L_20110527_180000V_cnt.txt
I cut off the rest of the dialog so as not to fill a lot of space in
this email, but it lists all the cnt.txt files as if it finds the
files in order to work with them.
Not sure what this tells you.
R/
John
________________________________________
From: John Halley Gotway via RT [met_help at ucar.edu]
Sent: Wednesday, August 20, 2014 4:45 PM
To: Raby, John W CIV USARMY ARL (US)
Subject: Re: [rt.rap.ucar.edu #68716] Rscript for boxplots
(UNCLASSIFIED)
John,
Just to be clear, are you running these commands in the directory that
contains the "plot_cnt.R" file? You could try running using the full
path
that file:
Rscript /full/path/to/plot_cnt.R /full/path/to/*_cnt.txt
That script does write a temp file and an output file to current
directory. So you'll need write permission in the directory you're
running
it.
Looks like that version of the web has headers for METv3.0. We'll
need to
update those header for the upcoming version 5.0 release.
Thanks,
John
On Wed, Aug 20, 2014 at 4:08 PM, Raby, John W USA CIV via RT <
met_help at ucar.edu> wrote:
>
> Wed Aug 20 16:08:00 2014: Request 68716 was acted upon.
> Transaction: Ticket created by john.w.raby2.civ at mail.mil
> Queue: met_help
> Subject: Rscript for boxplots (UNCLASSIFIED)
> Owner: Nobody
> Requestors: john.w.raby2.civ at mail.mil
> Status: new
> Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
>
>
> Classification: UNCLASSIFIED
> Caveats: NONE
>
> In APR of 2012, I successfully ran the script " plot_cnt.R" which I
> downloaded from the DTC website. (Analysis scripts page). I was able
to get
> it running and interacted with John Halley Gotway to optimize the
way it
> runs for my data. For some reason, now I am getting an error when I
run
> the
> command "Rscript plot_cnt.R" in the command line positioned in the
> RGraphics
> directory, it says "Rscript execution error: no such file of
directory". I
> verified paths to Rscript and R. I also tried "Rscript
./plot_cnt.R", but
> no
> change. Do you have any suggestions on possible causes/fixes?
>
> Thanks.
>
> R/
> John
>
> Classification: UNCLASSIFIED
> Caveats: NONE
>
>
>
>
------------------------------------------------
Subject: Rscript for boxplots (UNCLASSIFIED)
From: John Halley Gotway
Time: Thu Aug 21 09:35:40 2014
John,
I haven't used that "--verbose" option for Rscript. It looks like
it's
listing out the detailed call to R that it's running.
As for your issue with paths, I'm really not sure. R and Rscript are
two
different executables. You could try:
which R
which Rscript
They may point to the same location... or they may not. Also, sys
admins
often set up softlinks. So it's possible that:
/home/rflaniga/opt/R/current/bin/Rscript
contains a soft link somewhere in the path and is actually pointing
to:
/opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/Rscript
But these issues are better worked out by you and your sys admin.
As for the error, are you able to send me the exact version of
"plot_cnt.R"
and a sample cnt file
(/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt)?
I could run that script here to rule out a problem in the logic of the
R
code itself.
Thanks,
John
On Thu, Aug 21, 2014 at 9:14 AM, Raby, John W USA CIV via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
>
> John -
>
> My sysadm confirmed that the software path is there, but is checking
on
> some other possibilities.
>
> I tried running a more complete command as follows:
>
> Rscript --verbose plot_cnt.R
> ~/MET_PointStat_30WRF/results_m1o1/20*/*_cnt.txt -column ME -out
> cnt_ME_plots_31dayWRF
> running
> '/opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/R --slave --no-
restore
> --file=plot_cnt.R --args
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_030000L_20110527_090000V_cnt.txt
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_060000L_20110527_120000V_cnt.txt
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_090000L_20110527_150000V_cnt.txt
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_120000L_20110527_180000V_cnt.txt
>
> I cut off the rest of the dialog so as not to fill a lot of space in
this
> email, but it lists all the cnt.txt files as if it finds the files
in order
> to work with them.
>
> Not sure what this tells you.
>
> R/
> John
> ________________________________________
> From: John Halley Gotway via RT [met_help at ucar.edu]
> Sent: Wednesday, August 20, 2014 4:45 PM
> To: Raby, John W CIV USARMY ARL (US)
> Subject: Re: [rt.rap.ucar.edu #68716] Rscript for boxplots
(UNCLASSIFIED)
>
> John,
>
> Just to be clear, are you running these commands in the directory
that
> contains the "plot_cnt.R" file? You could try running using the
full path
> that file:
> Rscript /full/path/to/plot_cnt.R /full/path/to/*_cnt.txt
>
> That script does write a temp file and an output file to current
> directory. So you'll need write permission in the directory you're
running
> it.
>
> Looks like that version of the web has headers for METv3.0. We'll
need to
> update those header for the upcoming version 5.0 release.
>
> Thanks,
> John
>
>
> On Wed, Aug 20, 2014 at 4:08 PM, Raby, John W USA CIV via RT <
> met_help at ucar.edu> wrote:
>
> >
> > Wed Aug 20 16:08:00 2014: Request 68716 was acted upon.
> > Transaction: Ticket created by john.w.raby2.civ at mail.mil
> > Queue: met_help
> > Subject: Rscript for boxplots (UNCLASSIFIED)
> > Owner: Nobody
> > Requestors: john.w.raby2.civ at mail.mil
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
> >
> >
> > Classification: UNCLASSIFIED
> > Caveats: NONE
> >
> > In APR of 2012, I successfully ran the script " plot_cnt.R" which
I
> > downloaded from the DTC website. (Analysis scripts page). I was
able to
> get
> > it running and interacted with John Halley Gotway to optimize the
way it
> > runs for my data. For some reason, now I am getting an error when
I run
> > the
> > command "Rscript plot_cnt.R" in the command line positioned in the
> > RGraphics
> > directory, it says "Rscript execution error: no such file of
directory".
> I
> > verified paths to Rscript and R. I also tried "Rscript
./plot_cnt.R", but
> > no
> > change. Do you have any suggestions on possible causes/fixes?
> >
> > Thanks.
> >
> > R/
> > John
> >
> > Classification: UNCLASSIFIED
> > Caveats: NONE
> >
> >
> >
> >
>
>
>
>
------------------------------------------------
Subject: Rscript for boxplots (UNCLASSIFIED)
From: Raby, John W USA CIV
Time: Thu Aug 21 09:56:00 2014
John -
I've attached the plot_cnt.R file and a CNT file to this email.
I'll consult with my sysadm on the software.
R/
John
________________________________________
From: John Halley Gotway via RT [met_help at ucar.edu]
Sent: Thursday, August 21, 2014 9:35 AM
To: Raby, John W CIV USARMY ARL (US)
Subject: Re: [rt.rap.ucar.edu #68716] Rscript for boxplots
(UNCLASSIFIED)
John,
I haven't used that "--verbose" option for Rscript. It looks like
it's
listing out the detailed call to R that it's running.
As for your issue with paths, I'm really not sure. R and Rscript are
two
different executables. You could try:
which R
which Rscript
They may point to the same location... or they may not. Also, sys
admins
often set up softlinks. So it's possible that:
/home/rflaniga/opt/R/current/bin/Rscript
contains a soft link somewhere in the path and is actually pointing
to:
/opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/Rscript
But these issues are better worked out by you and your sys admin.
As for the error, are you able to send me the exact version of
"plot_cnt.R"
and a sample cnt file
(/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt)?
I could run that script here to rule out a problem in the logic of the
R
code itself.
Thanks,
John
On Thu, Aug 21, 2014 at 9:14 AM, Raby, John W USA CIV via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
>
> John -
>
> My sysadm confirmed that the software path is there, but is checking
on
> some other possibilities.
>
> I tried running a more complete command as follows:
>
> Rscript --verbose plot_cnt.R
> ~/MET_PointStat_30WRF/results_m1o1/20*/*_cnt.txt -column ME -out
> cnt_ME_plots_31dayWRF
> running
> '/opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/R --slave --no-
restore
> --file=plot_cnt.R --args
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_030000L_20110527_090000V_cnt.txt
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_060000L_20110527_120000V_cnt.txt
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_090000L_20110527_150000V_cnt.txt
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_120000L_20110527_180000V_cnt.txt
>
> I cut off the rest of the dialog so as not to fill a lot of space in
this
> email, but it lists all the cnt.txt files as if it finds the files
in order
> to work with them.
>
> Not sure what this tells you.
>
> R/
> John
> ________________________________________
> From: John Halley Gotway via RT [met_help at ucar.edu]
> Sent: Wednesday, August 20, 2014 4:45 PM
> To: Raby, John W CIV USARMY ARL (US)
> Subject: Re: [rt.rap.ucar.edu #68716] Rscript for boxplots
(UNCLASSIFIED)
>
> John,
>
> Just to be clear, are you running these commands in the directory
that
> contains the "plot_cnt.R" file? You could try running using the
full path
> that file:
> Rscript /full/path/to/plot_cnt.R /full/path/to/*_cnt.txt
>
> That script does write a temp file and an output file to current
> directory. So you'll need write permission in the directory you're
running
> it.
>
> Looks like that version of the web has headers for METv3.0. We'll
need to
> update those header for the upcoming version 5.0 release.
>
> Thanks,
> John
>
>
> On Wed, Aug 20, 2014 at 4:08 PM, Raby, John W USA CIV via RT <
> met_help at ucar.edu> wrote:
>
> >
> > Wed Aug 20 16:08:00 2014: Request 68716 was acted upon.
> > Transaction: Ticket created by john.w.raby2.civ at mail.mil
> > Queue: met_help
> > Subject: Rscript for boxplots (UNCLASSIFIED)
> > Owner: Nobody
> > Requestors: john.w.raby2.civ at mail.mil
> > Status: new
> > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
> >
> >
> > Classification: UNCLASSIFIED
> > Caveats: NONE
> >
> > In APR of 2012, I successfully ran the script " plot_cnt.R" which
I
> > downloaded from the DTC website. (Analysis scripts page). I was
able to
> get
> > it running and interacted with John Halley Gotway to optimize the
way it
> > runs for my data. For some reason, now I am getting an error when
I run
> > the
> > command "Rscript plot_cnt.R" in the command line positioned in the
> > RGraphics
> > directory, it says "Rscript execution error: no such file of
directory".
> I
> > verified paths to Rscript and R. I also tried "Rscript
./plot_cnt.R", but
> > no
> > change. Do you have any suggestions on possible causes/fixes?
> >
> > Thanks.
> >
> > R/
> > John
> >
> > Classification: UNCLASSIFIED
> > Caveats: NONE
> >
> >
> >
> >
>
>
>
>
------------------------------------------------
Subject: Rscript for boxplots (UNCLASSIFIED)
From: Raby, John W USA CIV
Time: Thu Aug 21 09:56:00 2014
VERSION MODEL FCST_LEAD FCST_VALID_BEG FCST_VALID_END OBS_LEAD
OBS_VALID_BEG OBS_VALID_END FCST_VAR FCST_LEV OBS_VAR OBS_LEV
OBTYPE VX_MASK INTERP_MTHD INTERP_PNTS FCST_THRESH OBS_THRESH
COV_THRESH ALPHA LINE_TYPE TOTAL FBAR FBAR_NCL FBAR_NCU
FBAR_BCL FBAR_BCU FSTDEV FSTDEV_NCL FSTDEV_NCU FSTDEV_BCL
FSTDEV_BCU OBAR OBAR_NCL OBAR_NCU OBAR_BCL OBAR_BCU
OSTDEV OSTDEV_NCL OSTDEV_NCU OSTDEV_BCL OSTDEV_BCU PR_CORR
PR_CORR_NCL PR_CORR_NCU PR_CORR_BCL PR_CORR_BCU SP_CORR KT_CORR RANKS
FRANK_TIES ORANK_TIES ME ME_NCL ME_NCU ME_BCL ME_BCU
ESTDEV ESTDEV_NCL ESTDEV_NCU ESTDEV_BCL ESTDEV_BCU MBIAS
MBIAS_BCL MBIAS_BCU MAE MAE_BCL MAE_BCU MSE MSE_BCL
MSE_BCU BCMSE BCMSE_BCL BCMSE_BCU RMSE RMSE_BCL RMSE_BCU
E10 E10_BCL E10_BCU E25 E25_BCL E25_BCU E50
E50_BCL E50_BCU E75 E75_BCL E75_BCU E90 E90_BCL E90_BCU
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 TMP P775-625 TMP P775-625
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 4 276.90727 267.91256 285.90199 NA
NA 5.65270 3.20220 21.07637 NA NA
275.08334 266.65948 283.50719 NA NA 5.29395
2.99897 19.73875 NA NA 0.98755 -0.56893
0.99998 NA NA 1.00000 1.00000 4 0
0 1.82394 0.33652 3.31136 NA NA 0.93476
0.52953 3.48531 NA NA 1.00663 NA NA
1.82394 NA NA 3.98209 NA NA 0.65534 NA
NA 1.99552 NA NA 0.95482 NA NA
1.25482 NA NA 1.81973 NA NA 2.38885 NA
NA 2.69643 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 TMP P875-775 TMP P875-775
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 84 283.20649 282.62562 283.78735 NA
NA 2.71624 2.35845 3.20312 NA NA
281.72355 281.15412 282.29297 NA NA 2.66273
2.31199 3.14002 NA NA 0.73052 0.61197
0.81696 NA NA 0.60879 0.45263 84 2
28 1.48294 1.06057 1.90531 NA NA 1.97508
1.71492 2.32911 NA NA 1.00526 NA NA
2.05559 NA NA 6.05362 NA NA 3.85451 NA
NA 2.46041 NA NA -1.11937 NA NA
-0.03585 NA NA 1.79012 NA NA 2.61846 NA
NA 3.79999 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 TMP P910-875 TMP P910-875
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 1 281.18282 NA NA NA
NA NA NA NA NA NA
277.54999 NA NA NA NA NA NA
NA NA NA NA NA NA NA
NA NA NA 1 0 0 3.63283 NA
NA NA NA NA NA NA NA NA
1.01309 NA NA 3.63283 NA NA 13.19744
NA NA 0.00000 NA NA 3.63283 NA NA
3.63283 NA NA 3.63283 NA NA 3.63283 NA
NA 3.63283 NA NA 3.63283 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 HGT P775-625 HGT P775-625
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 4 2395.53286 2030.50805 2760.55767 NA
NA 229.39888 129.95207 855.32457 NA NA
2394.02502 2032.61744 2755.43261 NA NA 227.12565
128.66430 846.84871 NA NA 0.99995 NA NA
NA NA 1.00000 1.00000 4 0 0
1.50784 -3.58857 6.60425 NA NA 3.20282 1.81437
11.94188 NA NA 1.00063 NA NA 2.81290
NA NA 9.96714 NA NA 7.69357 NA NA
3.15708 NA NA -1.37590 NA NA 0.47543 NA
NA 1.72074 NA NA 2.75315 NA NA 4.22125
NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 HGT P875-775 HGT P875-775
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 86 1479.90126 1430.03152 1529.77100 NA
NA 235.95993 205.19737 277.66787 NA NA
1488.09186 1439.20098 1536.98275 NA NA 231.32845
201.16970 272.21773 NA NA 0.99855 0.99777
0.99906 NA NA 0.97790 0.90155 86 2
5 -8.19060 -11.02231 -5.35890 NA NA 13.39829
11.65153 15.76656 NA NA 0.99450 NA NA
11.25151 NA NA 244.51285 NA NA 177.42686 NA
NA 15.63691 NA NA -29.05177 NA NA
-13.36030 NA NA -5.58899 NA NA 0.93881 NA
NA 5.52453 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 HGT P910-875 HGT P910-875
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 1 1188.49262 NA NA NA
NA NA NA NA NA NA
1565.81995 NA NA NA NA NA NA
NA NA NA NA NA NA NA
NA NA NA 1 0 0 -377.32733 NA
NA NA NA NA NA NA NA NA
0.75902 NA NA 377.32733 NA NA 142375.91439
NA NA 0.00000 NA NA 377.32733 NA NA
-377.32733 NA NA -377.32733 NA NA -377.32733 NA
NA -377.32733 NA NA -377.32733 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 UGRD P775-625 UGRD P775-625
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 4 2.92909 -0.66412 6.52231 NA
NA 2.25815 1.27922 8.41961 NA NA 0.00000
0.00000 0.00000 NA NA 0.00000 0.00000
0.00000 NA NA NA NA NA NA
NA NA NA 4 0 3 2.92909
-0.66412 6.52231 NA NA 2.25815 1.27922 8.41961 NA
NA NA NA NA 2.92909 NA NA
12.40401 NA NA 3.82442 NA NA 3.52193
NA NA 1.31538 NA NA 1.66683 NA NA
2.22328 NA NA 3.48554 NA NA 5.10746 NA
NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 VGRD P775-625 VGRD P775-625
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 4 -0.37970 -2.68659 1.92719 NA
NA 1.44976 0.82127 5.40550 NA NA 0.00000
0.00000 0.00000 NA NA 0.00000 0.00000
0.00000 NA NA NA NA NA NA
NA NA NA 4 0 3 -0.37970
-2.68659 1.92719 NA NA 1.44976 0.82127 5.40550 NA
NA NA NA NA 1.10304 NA NA
1.72053 NA NA 1.57635 NA NA 1.31169
NA NA -1.80336 NA NA -1.08198 NA NA
-0.11755 NA NA 0.58472 NA NA 0.83423 NA
NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 UGRD P875-775 UGRD P875-775
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 85 0.17086 -0.09873 0.44044 NA
NA 1.26810 1.10193 1.49381 NA NA
-0.00797 -0.30854 0.29260 NA NA 1.41385
1.22857 1.66550 NA NA 0.27008 0.06043
0.45690 NA NA 0.23389 0.16300 85 3
27 0.17883 -0.16650 0.52415 NA NA 1.62437
1.41151 1.91350 NA NA -21.44057 NA NA
1.19250 NA NA 2.63953 NA NA 2.60755 NA
NA 1.62466 NA NA -1.44220 NA NA
-0.54704 NA NA 0.02216 NA NA 1.10696 NA
NA 2.20053 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 VGRD P875-775 VGRD P875-775
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 85 -0.71452 -1.01452 -0.41452 NA
NA 1.41120 1.22627 1.66238 NA NA
-0.73614 -1.13877 -0.33352 NA NA 1.89392
1.64574 2.23102 NA NA 0.31702 0.11143
0.49659 NA NA 0.33872 0.24436 85 2
27 0.02162 -0.39733 0.44058 NA NA 1.97074
1.71249 2.32151 NA NA 0.97063 NA NA
1.51779 NA NA 3.83859 NA NA 3.83812 NA
NA 1.95923 NA NA -2.12369 NA NA
-1.18566 NA NA -0.20133 NA NA 1.10790 NA
NA 2.45473 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 UGRD P910-875 UGRD P910-875
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 1 0.67993 NA NA NA
NA NA NA NA NA NA 0.80776
NA NA NA NA NA NA NA
NA NA NA NA NA NA NA
NA NA 1 0 0 -0.12783 NA NA
NA NA NA NA NA NA NA
0.84174 NA NA 0.12783 NA NA 0.01634
NA NA 0.00000 NA NA 0.12783 NA NA
-0.12783 NA NA -0.12783 NA NA -0.12783 NA
NA -0.12783 NA NA -0.12783 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 VGRD P910-875 VGRD P910-875
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 1 0.04389 NA NA NA
NA NA NA NA NA NA 2.47134
NA NA NA NA NA NA NA
NA NA NA NA NA NA NA
NA NA 1 0 0 -2.42745 NA NA
NA NA NA NA NA NA NA
0.01776 NA NA 2.42745 NA NA 5.89253
NA NA 0.00000 NA NA 2.42745 NA NA
-2.42745 NA NA -2.42745 NA NA -2.42745 NA
NA -2.42745 NA NA -2.42745 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 DPT P775-625 DPT P775-625
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 4 268.06380 264.29284 271.83477 NA
NA 2.36985 1.34250 8.83611 NA NA
267.35540 266.43509 268.27571 NA NA 0.57837
0.32764 2.15647 NA NA 0.86377 -0.95400
0.99975 NA NA 0.80000 0.66667 4 0
0 0.70840 -2.30354 3.72035 NA NA 1.89285
1.07228 7.05757 NA NA 1.00265 NA NA
1.37729 NA NA 3.18899 NA NA 2.68715 NA
NA 1.78577 NA NA -0.71657 NA NA
-0.60928 NA NA 0.14227 NA NA 1.45995 NA
NA 2.58629 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 DPT P875-775 DPT P875-775
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 85 270.99549 270.57358 271.41739 NA
NA 1.98460 1.72453 2.33784 NA NA
272.78262 272.20643 273.35880 NA NA 2.71035
2.35518 3.19276 NA NA 0.45498 0.26783
0.60905 NA NA 0.49226 0.33721 85 3
6 -1.78713 -2.32452 -1.24974 NA NA 2.52783
2.19658 2.97776 NA NA 0.99345 NA NA
2.48364 NA NA 9.50859 NA NA 6.31476 NA
NA 3.08360 NA NA -5.50069 NA NA
-3.31157 NA NA -1.67707 NA NA -0.09358 NA
NA 1.15375 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 DPT P910-875 DPT P910-875
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 1 275.84185 NA NA NA
NA NA NA NA NA NA
275.33417 NA NA NA NA NA NA
NA NA NA NA NA NA NA
NA NA NA 1 0 0 0.50768 NA
NA NA NA NA NA NA NA NA
1.00184 NA NA 0.50768 NA NA 0.25774
NA NA 0.00000 NA NA 0.50768 NA NA
0.50768 NA NA 0.50768 NA NA 0.50768 NA
NA 0.50768 NA NA 0.50768 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 WIND P775-625 WIND P775-625
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 4 3.17953 -0.52115 6.88022 NA
NA 2.32569 1.31748 8.67143 NA NA 0.00000
0.00000 0.00000 NA NA 0.00000 0.00000
0.00000 NA NA NA NA NA NA
NA NA NA 4 0 3 3.17953
-0.52115 6.88022 NA NA 2.32569 1.31748 8.67143 NA
NA NA NA NA 3.17953 NA NA
14.16605 NA NA 4.05661 NA NA 3.76378
NA NA 1.65183 NA NA 1.86538 NA NA
2.30430 NA NA 3.61846 NA NA 5.40743 NA
NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 WIND P875-775 WIND P875-775
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 85 1.76197 1.54217 1.98176 NA
NA 1.03392 0.89843 1.21795 NA NA 1.72823
1.35321 2.10325 NA NA 1.76408 1.53291
2.07807 NA NA 0.38572 0.18806 0.55336 NA
NA 0.34349 0.23997 85 2 42 0.03373
-0.32033 0.38780 NA NA 1.66551 1.44726 1.96195 NA
NA 1.01952 NA NA 1.31511 NA NA
2.74241 NA NA 2.74127 NA NA 1.65602
NA NA -2.20311 NA NA -0.96479 NA NA
0.29826 NA NA 1.08119 NA NA 1.81125 NA
NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 WIND P910-875 WIND P910-875
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 1 0.70529 NA NA NA
NA NA NA NA NA NA 2.60000
NA NA NA NA NA NA NA
NA NA NA NA NA NA NA
NA NA 1 0 0 -1.89471 NA NA
NA NA NA NA NA NA NA
0.27127 NA NA 1.89471 NA NA 3.58991
NA NA 0.00000 NA NA 1.89471 NA NA
-1.89471 NA NA -1.89471 NA NA -1.89471 NA
NA -1.89471 NA NA -1.89471 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 RH P775-625 RH P775-625
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 4 54.86801 26.19032 83.54570 NA
NA 18.02242 10.20951 67.19744 NA NA
59.53774 25.52715 93.54833 NA NA 21.37386
12.10807 79.69346 NA NA 0.98579 -0.61236
0.99998 NA NA 1.00000 1.00000 4 0
0 -4.66973 -12.16425 2.82479 NA NA 4.70991
2.66812 17.56113 NA NA 0.92157 NA NA
5.81835 NA NA 38.44383 NA NA 16.63746 NA
NA 6.20031 NA NA -7.66278 NA NA
-7.12773 NA NA -6.47834 NA NA -4.02034 NA
NA -0.22978 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 RH P875-775 RH P875-775
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 85 43.16597 41.50016 44.83177 NA
NA 7.83584 6.80902 9.23055 NA NA
54.70145 52.25469 57.14822 NA NA 11.50942
10.00121 13.55800 NA NA 0.14190 -0.07345
0.34460 NA NA 0.00074 -0.01969 85 2
18 -11.53548 -14.29317 -8.77779 NA NA 12.97199
11.27213 15.28089 NA NA 0.78912 NA NA
14.03344 NA NA 299.36035 NA NA 166.29295 NA
NA 17.30203 NA NA -27.89420 NA NA
-20.99018 NA NA -11.50299 NA NA -3.54461 NA
NA 3.79014 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 RH P910-875 RH P910-875
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 1 69.16506 NA NA NA
NA NA NA NA NA NA
85.60000 NA NA NA NA NA NA
NA NA NA NA NA NA NA
NA NA NA 1 0 0 -16.43494 NA
NA NA NA NA NA NA NA NA
0.80800 NA NA 16.43494 NA NA 270.10732
NA NA 0.00000 NA NA 16.43494 NA NA
-16.43494 NA NA -16.43494 NA NA -16.43494 NA
NA -16.43494 NA NA -16.43494 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 TMP Z2 TMP Z2
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 523 278.48089 278.19339 278.76839 NA
NA 3.35463 3.16291 3.57129 NA NA
278.70759 278.37084 279.04435 NA NA 3.92928
3.70471 4.18306 NA NA 0.72551 0.68220
0.76374 NA NA 0.74827 0.54658 523 29
228 -0.22670 -0.46245 0.00904 NA NA 2.75075
2.59353 2.92841 NA NA 0.99919 NA NA
2.18716 NA NA 7.60353 NA NA 7.55214 NA
NA 2.75745 NA NA -3.70291 NA NA
-2.07703 NA NA -0.16434 NA NA 1.77346 NA
NA 3.10626 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 UGRD Z10 UGRD Z10
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 402 0.36350 0.21399 0.51302 NA
NA 1.52950 1.43058 1.64324 NA NA 0.35481
0.18409 0.52554 NA NA 1.74649 1.63353
1.87637 NA NA 0.18353 0.08729 0.27637 NA
NA 0.16055 0.10866 402 18 75 0.00869
-0.19658 0.21395 NA NA 2.09979 1.96398 2.25594 NA
NA 1.02448 NA NA 1.57758 NA NA
4.39822 NA NA 4.39815 NA NA 2.09719
NA NA -2.10941 NA NA -1.15835 NA NA
-0.07165 NA NA 1.53024 NA NA 2.36285 NA
NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 VGRD Z10 VGRD Z10
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 402 -0.43322 -0.55021 -0.31622 NA
NA 1.19683 1.11942 1.28583 NA NA
-0.42810 -0.60593 -0.25028 NA NA 1.81912
1.70146 1.95440 NA NA 0.18615 0.08998
0.27888 NA NA 0.19440 0.13010 402 19
76 -0.00511 -0.19893 0.18870 NA NA 1.98268
1.85444 2.13012 NA NA 1.01194 NA NA
1.51049 NA NA 3.92127 NA NA 3.92124 NA
NA 1.98022 NA NA -2.31211 NA NA
-1.18946 NA NA -0.16095 NA NA 0.98497 NA
NA 2.43180 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 DPT Z2 DPT Z2
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 383 270.33320 270.08135 270.58505 NA
NA 2.51474 2.34837 2.70669 NA NA
271.30779 271.00114 271.61444 NA NA 3.06193
2.85935 3.29564 NA NA 0.65534 0.59415
0.70899 NA NA 0.65434 0.47194 383 12
48 -0.97459 -1.21174 -0.73744 NA NA 2.36794
2.21127 2.54868 NA NA 0.99641 NA NA
2.03805 NA NA 6.54232 NA NA 5.59249 NA
NA 2.55780 NA NA -4.01978 NA NA
-2.55707 NA NA -0.96233 NA NA 0.55208 NA
NA 1.95250 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 WIND Z10 WIND Z10
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 408 1.71492 1.61194 1.81790 NA
NA 1.06127 0.99311 1.13957 NA NA 1.89429
1.72659 2.06199 NA NA 1.72833 1.61731
1.85583 NA NA 0.17161 0.07579 0.26429 NA
NA 0.16547 0.11304 408 23 189 -0.17937
-0.36048 0.00174 NA NA 1.86651 1.74662 2.00421 NA
NA 0.90531 NA NA 1.40497 NA NA
3.50750 NA NA 3.47533 NA NA 1.87283
NA NA -2.54552 NA NA -1.21596 NA NA
-0.04426 NA NA 1.05484 NA NA 1.83716 NA
NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 RH Z2 RH Z2
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 384 53.73208 52.76738 54.69678 NA
NA 9.64518 9.00783 10.38035 NA NA
56.86210 55.46054 58.26366 NA NA 14.01294
13.08697 15.08103 NA NA 0.40437 0.31713
0.48483 NA NA 0.33222 0.22463 384 11
161 -3.13002 -4.47223 -1.78780 NA NA 13.41958
12.53282 14.44244 NA NA 0.94495 NA NA
11.10764 NA NA 189.41313 NA NA 179.61613 NA
NA 13.76274 NA NA -20.27417 NA NA
-12.79322 NA NA -2.87069 NA NA 5.53531 NA
NA 14.49271 NA NA
V3.0 WRF 000000 20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 PRMSL Z0 PRMSL Z0
ADPSFC FULL DW_MEAN 4 NA NA NA
0.05000 CNT 91 101312.70250 101282.22450 101343.18050 NA
NA 148.34025 129.47445 173.69779 NA NA
101592.26099 101486.57718 101697.94480 NA NA 514.37642
448.95842 602.30482 NA NA 0.26102 0.05820
0.44314 NA NA 0.03080 0.03383 91 4
21 -279.55849 -381.61958 -177.49740 NA NA 496.74421
433.56866 581.65853 NA NA 0.99725 NA NA
291.27177 NA NA 322196.16424 NA NA 244043.21534 NA
NA 567.62326 NA NA -505.51452 NA NA
-394.77661 NA NA -211.72769 NA NA -85.26191 NA
NA 3.34448 NA NA
------------------------------------------------
Subject: Rscript for boxplots (UNCLASSIFIED)
From: John Halley Gotway
Time: Thu Aug 21 10:08:02 2014
John,
OK, I ran the script with the data you sent, and it all works fine
(see
below). I'm running version 3.0.1 of R and Rscript.
It looks like the R code is working fine and the problem is in your
system
configuration.
Hopefully you guys are able to figure it out.
Thanks,
John
[johnhg at rambler]% Rscript plot_cnt.R
point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt
[1] "Reading: point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt"
[1] "Found: 28 CNT lines"
[1] "Writing: cnt_plots.pdf"
[1] "Processing case:
WRF_TMP_P775-625_TMP_P775-625_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_TMP_P875-775_TMP_P875-775_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_TMP_P910-875_TMP_P910-875_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_HGT_P775-625_HGT_P775-625_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_HGT_P875-775_HGT_P875-775_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_HGT_P910-875_HGT_P910-875_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_UGRD_P775-625_UGRD_P775-625_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_VGRD_P775-625_VGRD_P775-625_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_UGRD_P875-775_UGRD_P875-775_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_VGRD_P875-775_VGRD_P875-775_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_UGRD_P910-875_UGRD_P910-875_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_VGRD_P910-875_VGRD_P910-875_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_DPT_P775-625_DPT_P775-625_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_DPT_P875-775_DPT_P875-775_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_DPT_P910-875_DPT_P910-875_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_WIND_P775-625_WIND_P775-625_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_WIND_P875-775_WIND_P875-775_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_WIND_P910-875_WIND_P910-875_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_RH_P775-625_RH_P775-625_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_RH_P875-775_RH_P875-775_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_RH_P910-875_RH_P910-875_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case: WRF_TMP_Z2_TMP_Z2_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_UGRD_Z10_UGRD_Z10_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_VGRD_Z10_VGRD_Z10_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case: WRF_DPT_Z2_DPT_Z2_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_WIND_Z10_WIND_Z10_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case: WRF_RH_Z2_RH_Z2_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_PRMSL_Z0_PRMSL_Z0_ADPSFC_FULL_DW_MEAN_4_0.05"
null device
1
[1] "Finished: cnt_plots.pdf"
[johnhg at rambler]% which R
/usr/local/bin/R
[johnhg at rambler]% which Rscript
/usr/local/bin/Rscript
[johnhg at rambler]% R --version
R version 3.0.1 (2013-05-16) -- "Good Sport"
Copyright (C) 2013 The R Foundation for Statistical Computing
Platform: x86_64-unknown-linux-gnu (64-bit)
On Thu, Aug 21, 2014 at 9:56 AM, Raby, John W USA CIV via RT <
met_help at ucar.edu> wrote:
>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
>
> John -
>
> I've attached the plot_cnt.R file and a CNT file to this email.
>
> I'll consult with my sysadm on the software.
>
> R/
> John
> ________________________________________
> From: John Halley Gotway via RT [met_help at ucar.edu]
> Sent: Thursday, August 21, 2014 9:35 AM
> To: Raby, John W CIV USARMY ARL (US)
> Subject: Re: [rt.rap.ucar.edu #68716] Rscript for boxplots
(UNCLASSIFIED)
>
> John,
>
> I haven't used that "--verbose" option for Rscript. It looks like
it's
> listing out the detailed call to R that it's running.
>
> As for your issue with paths, I'm really not sure. R and Rscript
are two
> different executables. You could try:
> which R
> which Rscript
>
> They may point to the same location... or they may not. Also, sys
admins
> often set up softlinks. So it's possible that:
> /home/rflaniga/opt/R/current/bin/Rscript
> contains a soft link somewhere in the path and is actually
pointing to:
> /opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/Rscript
>
> But these issues are better worked out by you and your sys admin.
>
> As for the error, are you able to send me the exact version of
"plot_cnt.R"
> and a sample cnt file
>
>
(/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt)?
>
> I could run that script here to rule out a problem in the logic of
the R
> code itself.
>
> Thanks,
> John
>
>
> On Thu, Aug 21, 2014 at 9:14 AM, Raby, John W USA CIV via RT <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
> >
> > John -
> >
> > My sysadm confirmed that the software path is there, but is
checking on
> > some other possibilities.
> >
> > I tried running a more complete command as follows:
> >
> > Rscript --verbose plot_cnt.R
> > ~/MET_PointStat_30WRF/results_m1o1/20*/*_cnt.txt -column ME -out
> > cnt_ME_plots_31dayWRF
> > running
> > '/opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/R --slave --no-
restore
> > --file=plot_cnt.R --args
> >
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt
> >
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_030000L_20110527_090000V_cnt.txt
> >
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_060000L_20110527_120000V_cnt.txt
> >
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_090000L_20110527_150000V_cnt.txt
> >
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_120000L_20110527_180000V_cnt.txt
> >
> > I cut off the rest of the dialog so as not to fill a lot of space
in this
> > email, but it lists all the cnt.txt files as if it finds the files
in
> order
> > to work with them.
> >
> > Not sure what this tells you.
> >
> > R/
> > John
> > ________________________________________
> > From: John Halley Gotway via RT [met_help at ucar.edu]
> > Sent: Wednesday, August 20, 2014 4:45 PM
> > To: Raby, John W CIV USARMY ARL (US)
> > Subject: Re: [rt.rap.ucar.edu #68716] Rscript for boxplots
> (UNCLASSIFIED)
> >
> > John,
> >
> > Just to be clear, are you running these commands in the directory
that
> > contains the "plot_cnt.R" file? You could try running using the
full
> path
> > that file:
> > Rscript /full/path/to/plot_cnt.R /full/path/to/*_cnt.txt
> >
> > That script does write a temp file and an output file to current
> > directory. So you'll need write permission in the directory
you're
> running
> > it.
> >
> > Looks like that version of the web has headers for METv3.0. We'll
need
> to
> > update those header for the upcoming version 5.0 release.
> >
> > Thanks,
> > John
> >
> >
> > On Wed, Aug 20, 2014 at 4:08 PM, Raby, John W USA CIV via RT <
> > met_help at ucar.edu> wrote:
> >
> > >
> > > Wed Aug 20 16:08:00 2014: Request 68716 was acted upon.
> > > Transaction: Ticket created by john.w.raby2.civ at mail.mil
> > > Queue: met_help
> > > Subject: Rscript for boxplots (UNCLASSIFIED)
> > > Owner: Nobody
> > > Requestors: john.w.raby2.civ at mail.mil
> > > Status: new
> > > Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716
> >
> > >
> > >
> > > Classification: UNCLASSIFIED
> > > Caveats: NONE
> > >
> > > In APR of 2012, I successfully ran the script " plot_cnt.R"
which I
> > > downloaded from the DTC website. (Analysis scripts page). I was
able to
> > get
> > > it running and interacted with John Halley Gotway to optimize
the way
> it
> > > runs for my data. For some reason, now I am getting an error
when I run
> > > the
> > > command "Rscript plot_cnt.R" in the command line positioned in
the
> > > RGraphics
> > > directory, it says "Rscript execution error: no such file of
> directory".
> > I
> > > verified paths to Rscript and R. I also tried "Rscript
./plot_cnt.R",
> but
> > > no
> > > change. Do you have any suggestions on possible causes/fixes?
> > >
> > > Thanks.
> > >
> > > R/
> > > John
> > >
> > > Classification: UNCLASSIFIED
> > > Caveats: NONE
> > >
> > >
> > >
> > >
> >
> >
> >
> >
>
>
>
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