[Met_help] [rt.rap.ucar.edu #68716] History for Rscript for boxplots (UNCLASSIFIED)

John Halley Gotway via RT met_help at ucar.edu
Fri Oct 3 12:26:24 MDT 2014


----------------------------------------------------------------
  Initial Request
----------------------------------------------------------------

Classification: UNCLASSIFIED
Caveats: NONE

In APR of 2012, I successfully ran the script " plot_cnt.R" which I
downloaded from the DTC website. (Analysis scripts page). I was able to get
it running and interacted with John Halley Gotway to optimize the way it
runs for my data. For some reason, now I am getting an error when I run  the
command "Rscript plot_cnt.R" in the command line positioned in the RGraphics
directory, it says "Rscript execution error: no such file of directory". I
verified paths to Rscript and R. I also tried "Rscript ./plot_cnt.R", but no
change. Do you have any suggestions on possible causes/fixes?

Thanks.

R/
John

Classification: UNCLASSIFIED
Caveats: NONE




----------------------------------------------------------------
  Complete Ticket History
----------------------------------------------------------------

Subject: Rscript for boxplots (UNCLASSIFIED)
From: John Halley Gotway
Time: Wed Aug 20 16:45:09 2014

John,

Just to be clear, are you running these commands in the directory that
contains the "plot_cnt.R" file?  You could try running using the full
path
that file:
  Rscript /full/path/to/plot_cnt.R /full/path/to/*_cnt.txt

That script does write a temp file and an output file to current
directory.  So you'll need write permission in the directory you're
running
it.

Looks like that version of the web has headers for METv3.0.  We'll
need to
update those header for the upcoming version 5.0 release.

Thanks,
John


On Wed, Aug 20, 2014 at 4:08 PM, Raby, John W USA CIV via RT <
met_help at ucar.edu> wrote:

>
> Wed Aug 20 16:08:00 2014: Request 68716 was acted upon.
> Transaction: Ticket created by john.w.raby2.civ at mail.mil
>        Queue: met_help
>      Subject: Rscript for boxplots (UNCLASSIFIED)
>        Owner: Nobody
>   Requestors: john.w.raby2.civ at mail.mil
>       Status: new
>  Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
>
>
> Classification: UNCLASSIFIED
> Caveats: NONE
>
> In APR of 2012, I successfully ran the script " plot_cnt.R" which I
> downloaded from the DTC website. (Analysis scripts page). I was able
to get
> it running and interacted with John Halley Gotway to optimize the
way it
> runs for my data. For some reason, now I am getting an error when I
run
> the
> command "Rscript plot_cnt.R" in the command line positioned in the
> RGraphics
> directory, it says "Rscript execution error: no such file of
directory". I
> verified paths to Rscript and R. I also tried "Rscript
./plot_cnt.R", but
> no
> change. Do you have any suggestions on possible causes/fixes?
>
> Thanks.
>
> R/
> John
>
> Classification: UNCLASSIFIED
> Caveats: NONE
>
>
>
>

------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #68716] Rscript for boxplots (UNCLASSIFIED)
From: Raby, John W USA CIV
Time: Thu Aug 21 07:30:18 2014

John -

Thanks for your response. I verified that I'm positioned in the
directory where the script is located and also just tried various ways
to specify the path and still doesn't work.

I noticed something odd about the paths to the software:

carson:jraby ~/RGraphics
> Rscript --verbose plot_cnt.R*
running
  '/opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/R --slave --no-
restore --file
=plot_cnt.R'

Rscript execution error: No such file or directory
carson:jraby ~/RGraphics
> which Rscript
/home/rflaniga/opt/R/current/bin/Rscript
carson:jraby ~/RGraphics

Why does the "Rscript --verbose plot_cnt.R*" command generate the
statement "running /opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/R
--slave --no-restore --file
=plot_cnt.R' which appears to point to a different path than when I
use the "which" command which points to:

> which Rscript
/home/rflaniga/opt/R/current/bin/Rscript
carson:jraby ~/RGraphics

This may be the source of the problem. I'll work with my sysadm to get
his opinion. What is your take?
R/
John


________________________________________
From: John Halley Gotway via RT [met_help at ucar.edu]
Sent: Wednesday, August 20, 2014 4:45 PM
To: Raby, John W CIV USARMY ARL (US)
Subject: Re: [rt.rap.ucar.edu #68716] Rscript for boxplots
(UNCLASSIFIED)

John,

Just to be clear, are you running these commands in the directory that
contains the "plot_cnt.R" file?  You could try running using the full
path
that file:
  Rscript /full/path/to/plot_cnt.R /full/path/to/*_cnt.txt

That script does write a temp file and an output file to current
directory.  So you'll need write permission in the directory you're
running
it.

Looks like that version of the web has headers for METv3.0.  We'll
need to
update those header for the upcoming version 5.0 release.

Thanks,
John


On Wed, Aug 20, 2014 at 4:08 PM, Raby, John W USA CIV via RT <
met_help at ucar.edu> wrote:

>
> Wed Aug 20 16:08:00 2014: Request 68716 was acted upon.
> Transaction: Ticket created by john.w.raby2.civ at mail.mil
>        Queue: met_help
>      Subject: Rscript for boxplots (UNCLASSIFIED)
>        Owner: Nobody
>   Requestors: john.w.raby2.civ at mail.mil
>       Status: new
>  Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
>
>
> Classification: UNCLASSIFIED
> Caveats: NONE
>
> In APR of 2012, I successfully ran the script " plot_cnt.R" which I
> downloaded from the DTC website. (Analysis scripts page). I was able
to get
> it running and interacted with John Halley Gotway to optimize the
way it
> runs for my data. For some reason, now I am getting an error when I
run
> the
> command "Rscript plot_cnt.R" in the command line positioned in the
> RGraphics
> directory, it says "Rscript execution error: no such file of
directory". I
> verified paths to Rscript and R. I also tried "Rscript
./plot_cnt.R", but
> no
> change. Do you have any suggestions on possible causes/fixes?
>
> Thanks.
>
> R/
> John
>
> Classification: UNCLASSIFIED
> Caveats: NONE
>
>
>
>



------------------------------------------------
Subject: RE: [rt.rap.ucar.edu #68716] Rscript for boxplots (UNCLASSIFIED)
From: Raby, John W USA CIV
Time: Thu Aug 21 09:14:53 2014

John -

My sysadm confirmed that the software path is there, but is checking
on some other possibilities.

I tried running a more complete command as follows:

 Rscript --verbose plot_cnt.R
~/MET_PointStat_30WRF/results_m1o1/20*/*_cnt.txt -column ME -out
cnt_ME_plots_31dayWRF
running
  '/opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/R --slave --no-
restore --file=plot_cnt.R --args
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_030000L_20110527_090000V_cnt.txt
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_060000L_20110527_120000V_cnt.txt
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_090000L_20110527_150000V_cnt.txt
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_120000L_20110527_180000V_cnt.txt

I cut off the rest of the dialog so as not to fill a lot of space in
this email, but it lists all the cnt.txt files as if it finds the
files in order to work with them.

Not sure what this tells you.

R/
John
________________________________________
From: John Halley Gotway via RT [met_help at ucar.edu]
Sent: Wednesday, August 20, 2014 4:45 PM
To: Raby, John W CIV USARMY ARL (US)
Subject: Re: [rt.rap.ucar.edu #68716] Rscript for boxplots
(UNCLASSIFIED)

John,

Just to be clear, are you running these commands in the directory that
contains the "plot_cnt.R" file?  You could try running using the full
path
that file:
  Rscript /full/path/to/plot_cnt.R /full/path/to/*_cnt.txt

That script does write a temp file and an output file to current
directory.  So you'll need write permission in the directory you're
running
it.

Looks like that version of the web has headers for METv3.0.  We'll
need to
update those header for the upcoming version 5.0 release.

Thanks,
John


On Wed, Aug 20, 2014 at 4:08 PM, Raby, John W USA CIV via RT <
met_help at ucar.edu> wrote:

>
> Wed Aug 20 16:08:00 2014: Request 68716 was acted upon.
> Transaction: Ticket created by john.w.raby2.civ at mail.mil
>        Queue: met_help
>      Subject: Rscript for boxplots (UNCLASSIFIED)
>        Owner: Nobody
>   Requestors: john.w.raby2.civ at mail.mil
>       Status: new
>  Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
>
>
> Classification: UNCLASSIFIED
> Caveats: NONE
>
> In APR of 2012, I successfully ran the script " plot_cnt.R" which I
> downloaded from the DTC website. (Analysis scripts page). I was able
to get
> it running and interacted with John Halley Gotway to optimize the
way it
> runs for my data. For some reason, now I am getting an error when I
run
> the
> command "Rscript plot_cnt.R" in the command line positioned in the
> RGraphics
> directory, it says "Rscript execution error: no such file of
directory". I
> verified paths to Rscript and R. I also tried "Rscript
./plot_cnt.R", but
> no
> change. Do you have any suggestions on possible causes/fixes?
>
> Thanks.
>
> R/
> John
>
> Classification: UNCLASSIFIED
> Caveats: NONE
>
>
>
>



------------------------------------------------
Subject: Rscript for boxplots (UNCLASSIFIED)
From: John Halley Gotway
Time: Thu Aug 21 09:35:40 2014

John,

I haven't used that "--verbose" option for Rscript.  It looks like
it's
listing out the detailed call to R that it's running.

As for your issue with paths, I'm really not sure.  R and Rscript are
two
different executables.  You could try:
  which R
  which Rscript

They may point to the same location... or they may not.  Also, sys
admins
often set up softlinks.  So it's possible that:
   /home/rflaniga/opt/R/current/bin/Rscript
   contains a soft link somewhere in the path and is actually pointing
to:
   /opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/Rscript

But these issues are better worked out by you and your sys admin.

As for the error, are you able to send me the exact version of
"plot_cnt.R"
and a sample cnt file
(/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt)?

I could run that script here to rule out a problem in the logic of the
R
code itself.

Thanks,
John


On Thu, Aug 21, 2014 at 9:14 AM, Raby, John W USA CIV via RT <
met_help at ucar.edu> wrote:

>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
>
> John -
>
> My sysadm confirmed that the software path is there, but is checking
on
> some other possibilities.
>
> I tried running a more complete command as follows:
>
>  Rscript --verbose plot_cnt.R
> ~/MET_PointStat_30WRF/results_m1o1/20*/*_cnt.txt -column ME -out
> cnt_ME_plots_31dayWRF
> running
>   '/opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/R --slave --no-
restore
> --file=plot_cnt.R --args
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_030000L_20110527_090000V_cnt.txt
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_060000L_20110527_120000V_cnt.txt
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_090000L_20110527_150000V_cnt.txt
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_120000L_20110527_180000V_cnt.txt
>
> I cut off the rest of the dialog so as not to fill a lot of space in
this
> email, but it lists all the cnt.txt files as if it finds the files
in order
> to work with them.
>
> Not sure what this tells you.
>
> R/
> John
> ________________________________________
> From: John Halley Gotway via RT [met_help at ucar.edu]
> Sent: Wednesday, August 20, 2014 4:45 PM
> To: Raby, John W CIV USARMY ARL (US)
> Subject: Re: [rt.rap.ucar.edu #68716] Rscript for boxplots
(UNCLASSIFIED)
>
> John,
>
> Just to be clear, are you running these commands in the directory
that
> contains the "plot_cnt.R" file?  You could try running using the
full path
> that file:
>   Rscript /full/path/to/plot_cnt.R /full/path/to/*_cnt.txt
>
> That script does write a temp file and an output file to current
> directory.  So you'll need write permission in the directory you're
running
> it.
>
> Looks like that version of the web has headers for METv3.0.  We'll
need to
> update those header for the upcoming version 5.0 release.
>
> Thanks,
> John
>
>
> On Wed, Aug 20, 2014 at 4:08 PM, Raby, John W USA CIV via RT <
> met_help at ucar.edu> wrote:
>
> >
> > Wed Aug 20 16:08:00 2014: Request 68716 was acted upon.
> > Transaction: Ticket created by john.w.raby2.civ at mail.mil
> >        Queue: met_help
> >      Subject: Rscript for boxplots (UNCLASSIFIED)
> >        Owner: Nobody
> >   Requestors: john.w.raby2.civ at mail.mil
> >       Status: new
> >  Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
> >
> >
> > Classification: UNCLASSIFIED
> > Caveats: NONE
> >
> > In APR of 2012, I successfully ran the script " plot_cnt.R" which
I
> > downloaded from the DTC website. (Analysis scripts page). I was
able to
> get
> > it running and interacted with John Halley Gotway to optimize the
way it
> > runs for my data. For some reason, now I am getting an error when
I run
> > the
> > command "Rscript plot_cnt.R" in the command line positioned in the
> > RGraphics
> > directory, it says "Rscript execution error: no such file of
directory".
> I
> > verified paths to Rscript and R. I also tried "Rscript
./plot_cnt.R", but
> > no
> > change. Do you have any suggestions on possible causes/fixes?
> >
> > Thanks.
> >
> > R/
> > John
> >
> > Classification: UNCLASSIFIED
> > Caveats: NONE
> >
> >
> >
> >
>
>
>
>

------------------------------------------------
Subject: Rscript for boxplots (UNCLASSIFIED)
From: Raby, John W USA CIV
Time: Thu Aug 21 09:56:00 2014

John -

I've attached the plot_cnt.R file and a CNT file to this email.

I'll consult with my sysadm on the software.

R/
John
________________________________________
From: John Halley Gotway via RT [met_help at ucar.edu]
Sent: Thursday, August 21, 2014 9:35 AM
To: Raby, John W CIV USARMY ARL (US)
Subject: Re: [rt.rap.ucar.edu #68716] Rscript for boxplots
(UNCLASSIFIED)

John,

I haven't used that "--verbose" option for Rscript.  It looks like
it's
listing out the detailed call to R that it's running.

As for your issue with paths, I'm really not sure.  R and Rscript are
two
different executables.  You could try:
  which R
  which Rscript

They may point to the same location... or they may not.  Also, sys
admins
often set up softlinks.  So it's possible that:
   /home/rflaniga/opt/R/current/bin/Rscript
   contains a soft link somewhere in the path and is actually pointing
to:
   /opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/Rscript

But these issues are better worked out by you and your sys admin.

As for the error, are you able to send me the exact version of
"plot_cnt.R"
and a sample cnt file
(/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt)?

I could run that script here to rule out a problem in the logic of the
R
code itself.

Thanks,
John


On Thu, Aug 21, 2014 at 9:14 AM, Raby, John W USA CIV via RT <
met_help at ucar.edu> wrote:

>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
>
> John -
>
> My sysadm confirmed that the software path is there, but is checking
on
> some other possibilities.
>
> I tried running a more complete command as follows:
>
>  Rscript --verbose plot_cnt.R
> ~/MET_PointStat_30WRF/results_m1o1/20*/*_cnt.txt -column ME -out
> cnt_ME_plots_31dayWRF
> running
>   '/opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/R --slave --no-
restore
> --file=plot_cnt.R --args
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_030000L_20110527_090000V_cnt.txt
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_060000L_20110527_120000V_cnt.txt
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_090000L_20110527_150000V_cnt.txt
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_120000L_20110527_180000V_cnt.txt
>
> I cut off the rest of the dialog so as not to fill a lot of space in
this
> email, but it lists all the cnt.txt files as if it finds the files
in order
> to work with them.
>
> Not sure what this tells you.
>
> R/
> John
> ________________________________________
> From: John Halley Gotway via RT [met_help at ucar.edu]
> Sent: Wednesday, August 20, 2014 4:45 PM
> To: Raby, John W CIV USARMY ARL (US)
> Subject: Re: [rt.rap.ucar.edu #68716] Rscript for boxplots
(UNCLASSIFIED)
>
> John,
>
> Just to be clear, are you running these commands in the directory
that
> contains the "plot_cnt.R" file?  You could try running using the
full path
> that file:
>   Rscript /full/path/to/plot_cnt.R /full/path/to/*_cnt.txt
>
> That script does write a temp file and an output file to current
> directory.  So you'll need write permission in the directory you're
running
> it.
>
> Looks like that version of the web has headers for METv3.0.  We'll
need to
> update those header for the upcoming version 5.0 release.
>
> Thanks,
> John
>
>
> On Wed, Aug 20, 2014 at 4:08 PM, Raby, John W USA CIV via RT <
> met_help at ucar.edu> wrote:
>
> >
> > Wed Aug 20 16:08:00 2014: Request 68716 was acted upon.
> > Transaction: Ticket created by john.w.raby2.civ at mail.mil
> >        Queue: met_help
> >      Subject: Rscript for boxplots (UNCLASSIFIED)
> >        Owner: Nobody
> >   Requestors: john.w.raby2.civ at mail.mil
> >       Status: new
> >  Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
> >
> >
> > Classification: UNCLASSIFIED
> > Caveats: NONE
> >
> > In APR of 2012, I successfully ran the script " plot_cnt.R" which
I
> > downloaded from the DTC website. (Analysis scripts page). I was
able to
> get
> > it running and interacted with John Halley Gotway to optimize the
way it
> > runs for my data. For some reason, now I am getting an error when
I run
> > the
> > command "Rscript plot_cnt.R" in the command line positioned in the
> > RGraphics
> > directory, it says "Rscript execution error: no such file of
directory".
> I
> > verified paths to Rscript and R. I also tried "Rscript
./plot_cnt.R", but
> > no
> > change. Do you have any suggestions on possible causes/fixes?
> >
> > Thanks.
> >
> > R/
> > John
> >
> > Classification: UNCLASSIFIED
> > Caveats: NONE
> >
> >
> >
> >
>
>
>
>


------------------------------------------------
Subject: Rscript for boxplots (UNCLASSIFIED)
From: Raby, John W USA CIV
Time: Thu Aug 21 09:56:00 2014

VERSION MODEL FCST_LEAD FCST_VALID_BEG  FCST_VALID_END  OBS_LEAD
OBS_VALID_BEG   OBS_VALID_END   FCST_VAR FCST_LEV OBS_VAR OBS_LEV
OBTYPE VX_MASK INTERP_MTHD INTERP_PNTS FCST_THRESH OBS_THRESH
COV_THRESH ALPHA   LINE_TYPE TOTAL FBAR         FBAR_NCL     FBAR_NCU
FBAR_BCL FBAR_BCU FSTDEV    FSTDEV_NCL FSTDEV_NCU FSTDEV_BCL
FSTDEV_BCU OBAR         OBAR_NCL     OBAR_NCU     OBAR_BCL OBAR_BCU
OSTDEV    OSTDEV_NCL OSTDEV_NCU OSTDEV_BCL OSTDEV_BCU PR_CORR
PR_CORR_NCL PR_CORR_NCU PR_CORR_BCL PR_CORR_BCU SP_CORR KT_CORR  RANKS
FRANK_TIES ORANK_TIES ME         ME_NCL     ME_NCU     ME_BCL ME_BCU
ESTDEV    ESTDEV_NCL ESTDEV_NCU ESTDEV_BCL ESTDEV_BCU MBIAS
MBIAS_BCL MBIAS_BCU MAE       MAE_BCL MAE_BCU MSE          MSE_BCL
MSE_BCU BCMSE        BCMSE_BCL BCMSE_BCU RMSE      RMSE_BCL RMSE_BCU
E10        E10_BCL E10_BCU E25        E25_BCL E25_BCU E50
E50_BCL E50_BCU E75        E75_BCL E75_BCU E90        E90_BCL E90_BCU
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 TMP      P775-625 TMP     P775-625
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       4     276.90727    267.91256    285.90199    NA
NA       5.65270   3.20220    21.07637   NA         NA
275.08334    266.65948    283.50719    NA       NA       5.29395
2.99897    19.73875   NA         NA         0.98755 -0.56893
0.99998     NA          NA          1.00000 1.00000  4     0
0          1.82394    0.33652    3.31136    NA     NA     0.93476
0.52953    3.48531    NA         NA         1.00663   NA        NA
1.82394   NA      NA      3.98209      NA      NA      0.65534      NA
NA        1.99552   NA       NA       0.95482    NA      NA
1.25482    NA      NA      1.81973    NA      NA      2.38885    NA
NA      2.69643    NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 TMP      P875-775 TMP     P875-775
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       84    283.20649    282.62562    283.78735    NA
NA       2.71624   2.35845    3.20312    NA         NA
281.72355    281.15412    282.29297    NA       NA       2.66273
2.31199    3.14002    NA         NA         0.73052 0.61197
0.81696     NA          NA          0.60879 0.45263  84    2
28         1.48294    1.06057    1.90531    NA     NA     1.97508
1.71492    2.32911    NA         NA         1.00526   NA        NA
2.05559   NA      NA      6.05362      NA      NA      3.85451      NA
NA        2.46041   NA       NA       -1.11937   NA      NA
-0.03585   NA      NA      1.79012    NA      NA      2.61846    NA
NA      3.79999    NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 TMP      P910-875 TMP     P910-875
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       1     281.18282    NA           NA           NA
NA       NA        NA         NA         NA         NA
277.54999    NA           NA           NA       NA       NA        NA
NA         NA         NA         NA      NA          NA          NA
NA          NA      NA       1     0          0          3.63283    NA
NA         NA     NA     NA        NA         NA         NA         NA
1.01309   NA        NA        3.63283   NA      NA      13.19744
NA      NA      0.00000      NA        NA        3.63283   NA       NA
3.63283    NA      NA      3.63283    NA      NA      3.63283    NA
NA      3.63283    NA      NA      3.63283    NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 HGT      P775-625 HGT     P775-625
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       4     2395.53286   2030.50805   2760.55767   NA
NA       229.39888 129.95207  855.32457  NA         NA
2394.02502   2032.61744   2755.43261   NA       NA       227.12565
128.66430  846.84871  NA         NA         0.99995 NA          NA
NA          NA          1.00000 1.00000  4     0          0
1.50784    -3.58857   6.60425    NA     NA     3.20282   1.81437
11.94188   NA         NA         1.00063   NA        NA        2.81290
NA      NA      9.96714      NA      NA      7.69357      NA        NA
3.15708   NA       NA       -1.37590   NA      NA      0.47543    NA
NA      1.72074    NA      NA      2.75315    NA      NA      4.22125
NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 HGT      P875-775 HGT     P875-775
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       86    1479.90126   1430.03152   1529.77100   NA
NA       235.95993 205.19737  277.66787  NA         NA
1488.09186   1439.20098   1536.98275   NA       NA       231.32845
201.16970  272.21773  NA         NA         0.99855 0.99777
0.99906     NA          NA          0.97790 0.90155  86    2
5          -8.19060   -11.02231  -5.35890   NA     NA     13.39829
11.65153   15.76656   NA         NA         0.99450   NA        NA
11.25151  NA      NA      244.51285    NA      NA      177.42686    NA
NA        15.63691  NA       NA       -29.05177  NA      NA
-13.36030  NA      NA      -5.58899   NA      NA      0.93881    NA
NA      5.52453    NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 HGT      P910-875 HGT     P910-875
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       1     1188.49262   NA           NA           NA
NA       NA        NA         NA         NA         NA
1565.81995   NA           NA           NA       NA       NA        NA
NA         NA         NA         NA      NA          NA          NA
NA          NA      NA       1     0          0          -377.32733 NA
NA         NA     NA     NA        NA         NA         NA         NA
0.75902   NA        NA        377.32733 NA      NA      142375.91439
NA      NA      0.00000      NA        NA        377.32733 NA       NA
-377.32733 NA      NA      -377.32733 NA      NA      -377.32733 NA
NA      -377.32733 NA      NA      -377.32733 NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 UGRD     P775-625 UGRD    P775-625
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       4     2.92909      -0.66412     6.52231      NA
NA       2.25815   1.27922    8.41961    NA         NA         0.00000
0.00000      0.00000      NA       NA       0.00000   0.00000
0.00000    NA         NA         NA      NA          NA          NA
NA          NA      NA       4     0          3          2.92909
-0.66412   6.52231    NA     NA     2.25815   1.27922    8.41961    NA
NA         NA        NA        NA        2.92909   NA      NA
12.40401     NA      NA      3.82442      NA        NA        3.52193
NA       NA       1.31538    NA      NA      1.66683    NA      NA
2.22328    NA      NA      3.48554    NA      NA      5.10746    NA
NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 VGRD     P775-625 VGRD    P775-625
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       4     -0.37970     -2.68659     1.92719      NA
NA       1.44976   0.82127    5.40550    NA         NA         0.00000
0.00000      0.00000      NA       NA       0.00000   0.00000
0.00000    NA         NA         NA      NA          NA          NA
NA          NA      NA       4     0          3          -0.37970
-2.68659   1.92719    NA     NA     1.44976   0.82127    5.40550    NA
NA         NA        NA        NA        1.10304   NA      NA
1.72053      NA      NA      1.57635      NA        NA        1.31169
NA       NA       -1.80336   NA      NA      -1.08198   NA      NA
-0.11755   NA      NA      0.58472    NA      NA      0.83423    NA
NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 UGRD     P875-775 UGRD    P875-775
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       85    0.17086      -0.09873     0.44044      NA
NA       1.26810   1.10193    1.49381    NA         NA
-0.00797     -0.30854     0.29260      NA       NA       1.41385
1.22857    1.66550    NA         NA         0.27008 0.06043
0.45690     NA          NA          0.23389 0.16300  85    3
27         0.17883    -0.16650   0.52415    NA     NA     1.62437
1.41151    1.91350    NA         NA         -21.44057 NA        NA
1.19250   NA      NA      2.63953      NA      NA      2.60755      NA
NA        1.62466   NA       NA       -1.44220   NA      NA
-0.54704   NA      NA      0.02216    NA      NA      1.10696    NA
NA      2.20053    NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 VGRD     P875-775 VGRD    P875-775
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       85    -0.71452     -1.01452     -0.41452     NA
NA       1.41120   1.22627    1.66238    NA         NA
-0.73614     -1.13877     -0.33352     NA       NA       1.89392
1.64574    2.23102    NA         NA         0.31702 0.11143
0.49659     NA          NA          0.33872 0.24436  85    2
27         0.02162    -0.39733   0.44058    NA     NA     1.97074
1.71249    2.32151    NA         NA         0.97063   NA        NA
1.51779   NA      NA      3.83859      NA      NA      3.83812      NA
NA        1.95923   NA       NA       -2.12369   NA      NA
-1.18566   NA      NA      -0.20133   NA      NA      1.10790    NA
NA      2.45473    NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 UGRD     P910-875 UGRD    P910-875
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       1     0.67993      NA           NA           NA
NA       NA        NA         NA         NA         NA         0.80776
NA           NA           NA       NA       NA        NA         NA
NA         NA         NA      NA          NA          NA          NA
NA      NA       1     0          0          -0.12783   NA         NA
NA     NA     NA        NA         NA         NA         NA
0.84174   NA        NA        0.12783   NA      NA      0.01634
NA      NA      0.00000      NA        NA        0.12783   NA       NA
-0.12783   NA      NA      -0.12783   NA      NA      -0.12783   NA
NA      -0.12783   NA      NA      -0.12783   NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 VGRD     P910-875 VGRD    P910-875
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       1     0.04389      NA           NA           NA
NA       NA        NA         NA         NA         NA         2.47134
NA           NA           NA       NA       NA        NA         NA
NA         NA         NA      NA          NA          NA          NA
NA      NA       1     0          0          -2.42745   NA         NA
NA     NA     NA        NA         NA         NA         NA
0.01776   NA        NA        2.42745   NA      NA      5.89253
NA      NA      0.00000      NA        NA        2.42745   NA       NA
-2.42745   NA      NA      -2.42745   NA      NA      -2.42745   NA
NA      -2.42745   NA      NA      -2.42745   NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 DPT      P775-625 DPT     P775-625
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       4     268.06380    264.29284    271.83477    NA
NA       2.36985   1.34250    8.83611    NA         NA
267.35540    266.43509    268.27571    NA       NA       0.57837
0.32764    2.15647    NA         NA         0.86377 -0.95400
0.99975     NA          NA          0.80000 0.66667  4     0
0          0.70840    -2.30354   3.72035    NA     NA     1.89285
1.07228    7.05757    NA         NA         1.00265   NA        NA
1.37729   NA      NA      3.18899      NA      NA      2.68715      NA
NA        1.78577   NA       NA       -0.71657   NA      NA
-0.60928   NA      NA      0.14227    NA      NA      1.45995    NA
NA      2.58629    NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 DPT      P875-775 DPT     P875-775
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       85    270.99549    270.57358    271.41739    NA
NA       1.98460   1.72453    2.33784    NA         NA
272.78262    272.20643    273.35880    NA       NA       2.71035
2.35518    3.19276    NA         NA         0.45498 0.26783
0.60905     NA          NA          0.49226 0.33721  85    3
6          -1.78713   -2.32452   -1.24974   NA     NA     2.52783
2.19658    2.97776    NA         NA         0.99345   NA        NA
2.48364   NA      NA      9.50859      NA      NA      6.31476      NA
NA        3.08360   NA       NA       -5.50069   NA      NA
-3.31157   NA      NA      -1.67707   NA      NA      -0.09358   NA
NA      1.15375    NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 DPT      P910-875 DPT     P910-875
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       1     275.84185    NA           NA           NA
NA       NA        NA         NA         NA         NA
275.33417    NA           NA           NA       NA       NA        NA
NA         NA         NA         NA      NA          NA          NA
NA          NA      NA       1     0          0          0.50768    NA
NA         NA     NA     NA        NA         NA         NA         NA
1.00184   NA        NA        0.50768   NA      NA      0.25774
NA      NA      0.00000      NA        NA        0.50768   NA       NA
0.50768    NA      NA      0.50768    NA      NA      0.50768    NA
NA      0.50768    NA      NA      0.50768    NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 WIND     P775-625 WIND    P775-625
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       4     3.17953      -0.52115     6.88022      NA
NA       2.32569   1.31748    8.67143    NA         NA         0.00000
0.00000      0.00000      NA       NA       0.00000   0.00000
0.00000    NA         NA         NA      NA          NA          NA
NA          NA      NA       4     0          3          3.17953
-0.52115   6.88022    NA     NA     2.32569   1.31748    8.67143    NA
NA         NA        NA        NA        3.17953   NA      NA
14.16605     NA      NA      4.05661      NA        NA        3.76378
NA       NA       1.65183    NA      NA      1.86538    NA      NA
2.30430    NA      NA      3.61846    NA      NA      5.40743    NA
NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 WIND     P875-775 WIND    P875-775
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       85    1.76197      1.54217      1.98176      NA
NA       1.03392   0.89843    1.21795    NA         NA         1.72823
1.35321      2.10325      NA       NA       1.76408   1.53291
2.07807    NA         NA         0.38572 0.18806     0.55336     NA
NA          0.34349 0.23997  85    2          42         0.03373
-0.32033   0.38780    NA     NA     1.66551   1.44726    1.96195    NA
NA         1.01952   NA        NA        1.31511   NA      NA
2.74241      NA      NA      2.74127      NA        NA        1.65602
NA       NA       -2.20311   NA      NA      -0.96479   NA      NA
0.29826    NA      NA      1.08119    NA      NA      1.81125    NA
NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 WIND     P910-875 WIND    P910-875
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       1     0.70529      NA           NA           NA
NA       NA        NA         NA         NA         NA         2.60000
NA           NA           NA       NA       NA        NA         NA
NA         NA         NA      NA          NA          NA          NA
NA      NA       1     0          0          -1.89471   NA         NA
NA     NA     NA        NA         NA         NA         NA
0.27127   NA        NA        1.89471   NA      NA      3.58991
NA      NA      0.00000      NA        NA        1.89471   NA       NA
-1.89471   NA      NA      -1.89471   NA      NA      -1.89471   NA
NA      -1.89471   NA      NA      -1.89471   NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 RH       P775-625 RH      P775-625
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       4     54.86801     26.19032     83.54570     NA
NA       18.02242  10.20951   67.19744   NA         NA
59.53774     25.52715     93.54833     NA       NA       21.37386
12.10807   79.69346   NA         NA         0.98579 -0.61236
0.99998     NA          NA          1.00000 1.00000  4     0
0          -4.66973   -12.16425  2.82479    NA     NA     4.70991
2.66812    17.56113   NA         NA         0.92157   NA        NA
5.81835   NA      NA      38.44383     NA      NA      16.63746     NA
NA        6.20031   NA       NA       -7.66278   NA      NA
-7.12773   NA      NA      -6.47834   NA      NA      -4.02034   NA
NA      -0.22978   NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 RH       P875-775 RH      P875-775
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       85    43.16597     41.50016     44.83177     NA
NA       7.83584   6.80902    9.23055    NA         NA
54.70145     52.25469     57.14822     NA       NA       11.50942
10.00121   13.55800   NA         NA         0.14190 -0.07345
0.34460     NA          NA          0.00074 -0.01969 85    2
18         -11.53548  -14.29317  -8.77779   NA     NA     12.97199
11.27213   15.28089   NA         NA         0.78912   NA        NA
14.03344  NA      NA      299.36035    NA      NA      166.29295    NA
NA        17.30203  NA       NA       -27.89420  NA      NA
-20.99018  NA      NA      -11.50299  NA      NA      -3.54461   NA
NA      3.79014    NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 RH       P910-875 RH      P910-875
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       1     69.16506     NA           NA           NA
NA       NA        NA         NA         NA         NA
85.60000     NA           NA           NA       NA       NA        NA
NA         NA         NA         NA      NA          NA          NA
NA          NA      NA       1     0          0          -16.43494  NA
NA         NA     NA     NA        NA         NA         NA         NA
0.80800   NA        NA        16.43494  NA      NA      270.10732
NA      NA      0.00000      NA        NA        16.43494  NA       NA
-16.43494  NA      NA      -16.43494  NA      NA      -16.43494  NA
NA      -16.43494  NA      NA      -16.43494  NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 TMP      Z2       TMP     Z2
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       523   278.48089    278.19339    278.76839    NA
NA       3.35463   3.16291    3.57129    NA         NA
278.70759    278.37084    279.04435    NA       NA       3.92928
3.70471    4.18306    NA         NA         0.72551 0.68220
0.76374     NA          NA          0.74827 0.54658  523   29
228        -0.22670   -0.46245   0.00904    NA     NA     2.75075
2.59353    2.92841    NA         NA         0.99919   NA        NA
2.18716   NA      NA      7.60353      NA      NA      7.55214      NA
NA        2.75745   NA       NA       -3.70291   NA      NA
-2.07703   NA      NA      -0.16434   NA      NA      1.77346    NA
NA      3.10626    NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 UGRD     Z10      UGRD    Z10
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       402   0.36350      0.21399      0.51302      NA
NA       1.52950   1.43058    1.64324    NA         NA         0.35481
0.18409      0.52554      NA       NA       1.74649   1.63353
1.87637    NA         NA         0.18353 0.08729     0.27637     NA
NA          0.16055 0.10866  402   18         75         0.00869
-0.19658   0.21395    NA     NA     2.09979   1.96398    2.25594    NA
NA         1.02448   NA        NA        1.57758   NA      NA
4.39822      NA      NA      4.39815      NA        NA        2.09719
NA       NA       -2.10941   NA      NA      -1.15835   NA      NA
-0.07165   NA      NA      1.53024    NA      NA      2.36285    NA
NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 VGRD     Z10      VGRD    Z10
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       402   -0.43322     -0.55021     -0.31622     NA
NA       1.19683   1.11942    1.28583    NA         NA
-0.42810     -0.60593     -0.25028     NA       NA       1.81912
1.70146    1.95440    NA         NA         0.18615 0.08998
0.27888     NA          NA          0.19440 0.13010  402   19
76         -0.00511   -0.19893   0.18870    NA     NA     1.98268
1.85444    2.13012    NA         NA         1.01194   NA        NA
1.51049   NA      NA      3.92127      NA      NA      3.92124      NA
NA        1.98022   NA       NA       -2.31211   NA      NA
-1.18946   NA      NA      -0.16095   NA      NA      0.98497    NA
NA      2.43180    NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 DPT      Z2       DPT     Z2
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       383   270.33320    270.08135    270.58505    NA
NA       2.51474   2.34837    2.70669    NA         NA
271.30779    271.00114    271.61444    NA       NA       3.06193
2.85935    3.29564    NA         NA         0.65534 0.59415
0.70899     NA          NA          0.65434 0.47194  383   12
48         -0.97459   -1.21174   -0.73744   NA     NA     2.36794
2.21127    2.54868    NA         NA         0.99641   NA        NA
2.03805   NA      NA      6.54232      NA      NA      5.59249      NA
NA        2.55780   NA       NA       -4.01978   NA      NA
-2.55707   NA      NA      -0.96233   NA      NA      0.55208    NA
NA      1.95250    NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 WIND     Z10      WIND    Z10
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       408   1.71492      1.61194      1.81790      NA
NA       1.06127   0.99311    1.13957    NA         NA         1.89429
1.72659      2.06199      NA       NA       1.72833   1.61731
1.85583    NA         NA         0.17161 0.07579     0.26429     NA
NA          0.16547 0.11304  408   23         189        -0.17937
-0.36048   0.00174    NA     NA     1.86651   1.74662    2.00421    NA
NA         0.90531   NA        NA        1.40497   NA      NA
3.50750      NA      NA      3.47533      NA        NA        1.87283
NA       NA       -2.54552   NA      NA      -1.21596   NA      NA
-0.04426   NA      NA      1.05484    NA      NA      1.83716    NA
NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 RH       Z2       RH      Z2
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       384   53.73208     52.76738     54.69678     NA
NA       9.64518   9.00783    10.38035   NA         NA
56.86210     55.46054     58.26366     NA       NA       14.01294
13.08697   15.08103   NA         NA         0.40437 0.31713
0.48483     NA          NA          0.33222 0.22463  384   11
161        -3.13002   -4.47223   -1.78780   NA     NA     13.41958
12.53282   14.44244   NA         NA         0.94495   NA        NA
11.10764  NA      NA      189.41313    NA      NA      179.61613    NA
NA        13.76274  NA       NA       -20.27417  NA      NA
-12.79322  NA      NA      -2.87069   NA      NA      5.53531    NA
NA      14.49271   NA      NA
V3.0    WRF   000000    20110527_060000 20110527_060000 000000
20110527_054000 20110527_062000 PRMSL    Z0       PRMSL   Z0
ADPSFC FULL    DW_MEAN     4           NA          NA         NA
0.05000 CNT       91    101312.70250 101282.22450 101343.18050 NA
NA       148.34025 129.47445  173.69779  NA         NA
101592.26099 101486.57718 101697.94480 NA       NA       514.37642
448.95842  602.30482  NA         NA         0.26102 0.05820
0.44314     NA          NA          0.03080 0.03383  91    4
21         -279.55849 -381.61958 -177.49740 NA     NA     496.74421
433.56866  581.65853  NA         NA         0.99725   NA        NA
291.27177 NA      NA      322196.16424 NA      NA      244043.21534 NA
NA        567.62326 NA       NA       -505.51452 NA      NA
-394.77661 NA      NA      -211.72769 NA      NA      -85.26191  NA
NA      3.34448    NA      NA

------------------------------------------------
Subject: Rscript for boxplots (UNCLASSIFIED)
From: John Halley Gotway
Time: Thu Aug 21 10:08:02 2014

John,

OK, I ran the script with the data you sent, and it all works fine
(see
below).  I'm running version 3.0.1 of R and Rscript.

It looks like the R code is working fine and the problem is in your
system
configuration.

Hopefully you guys are able to figure it out.

Thanks,
John

[johnhg at rambler]% Rscript plot_cnt.R
point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt
[1] "Reading: point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt"
[1] "Found: 28 CNT lines"
[1] "Writing: cnt_plots.pdf"
[1] "Processing case:
WRF_TMP_P775-625_TMP_P775-625_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_TMP_P875-775_TMP_P875-775_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_TMP_P910-875_TMP_P910-875_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_HGT_P775-625_HGT_P775-625_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_HGT_P875-775_HGT_P875-775_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_HGT_P910-875_HGT_P910-875_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_UGRD_P775-625_UGRD_P775-625_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_VGRD_P775-625_VGRD_P775-625_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_UGRD_P875-775_UGRD_P875-775_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_VGRD_P875-775_VGRD_P875-775_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_UGRD_P910-875_UGRD_P910-875_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_VGRD_P910-875_VGRD_P910-875_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_DPT_P775-625_DPT_P775-625_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_DPT_P875-775_DPT_P875-775_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_DPT_P910-875_DPT_P910-875_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_WIND_P775-625_WIND_P775-625_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_WIND_P875-775_WIND_P875-775_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_WIND_P910-875_WIND_P910-875_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_RH_P775-625_RH_P775-625_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_RH_P875-775_RH_P875-775_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_RH_P910-875_RH_P910-875_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case: WRF_TMP_Z2_TMP_Z2_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_UGRD_Z10_UGRD_Z10_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_VGRD_Z10_VGRD_Z10_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case: WRF_DPT_Z2_DPT_Z2_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_WIND_Z10_WIND_Z10_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case: WRF_RH_Z2_RH_Z2_ADPSFC_FULL_DW_MEAN_4_0.05"
[1] "Processing case:
WRF_PRMSL_Z0_PRMSL_Z0_ADPSFC_FULL_DW_MEAN_4_0.05"
null device
          1
[1] "Finished: cnt_plots.pdf"
[johnhg at rambler]% which R
/usr/local/bin/R
[johnhg at rambler]% which Rscript
/usr/local/bin/Rscript
[johnhg at rambler]% R --version
R version 3.0.1 (2013-05-16) -- "Good Sport"
Copyright (C) 2013 The R Foundation for Statistical Computing
Platform: x86_64-unknown-linux-gnu (64-bit)



On Thu, Aug 21, 2014 at 9:56 AM, Raby, John W USA CIV via RT <
met_help at ucar.edu> wrote:

>
> <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
>
> John -
>
> I've attached the plot_cnt.R file and a CNT file to this email.
>
> I'll consult with my sysadm on the software.
>
> R/
> John
> ________________________________________
> From: John Halley Gotway via RT [met_help at ucar.edu]
> Sent: Thursday, August 21, 2014 9:35 AM
> To: Raby, John W CIV USARMY ARL (US)
> Subject: Re: [rt.rap.ucar.edu #68716] Rscript for boxplots
(UNCLASSIFIED)
>
> John,
>
> I haven't used that "--verbose" option for Rscript.  It looks like
it's
> listing out the detailed call to R that it's running.
>
> As for your issue with paths, I'm really not sure.  R and Rscript
are two
> different executables.  You could try:
>   which R
>   which Rscript
>
> They may point to the same location... or they may not.  Also, sys
admins
> often set up softlinks.  So it's possible that:
>    /home/rflaniga/opt/R/current/bin/Rscript
>    contains a soft link somewhere in the path and is actually
pointing to:
>    /opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/Rscript
>
> But these issues are better worked out by you and your sys admin.
>
> As for the error, are you able to send me the exact version of
"plot_cnt.R"
> and a sample cnt file
>
>
(/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt)?
>
> I could run that script here to rule out a problem in the logic of
the R
> code itself.
>
> Thanks,
> John
>
>
> On Thu, Aug 21, 2014 at 9:14 AM, Raby, John W USA CIV via RT <
> met_help at ucar.edu> wrote:
>
> >
> > <URL: https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716 >
> >
> > John -
> >
> > My sysadm confirmed that the software path is there, but is
checking on
> > some other possibilities.
> >
> > I tried running a more complete command as follows:
> >
> >  Rscript --verbose plot_cnt.R
> > ~/MET_PointStat_30WRF/results_m1o1/20*/*_cnt.txt -column ME -out
> > cnt_ME_plots_31dayWRF
> > running
> >   '/opt2/users/rflaniga/opt/R/v_2.15.0/lib64/R/bin/R --slave --no-
restore
> > --file=plot_cnt.R --args
> >
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_000000L_20110527_060000V_cnt.txt
> >
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_030000L_20110527_090000V_cnt.txt
> >
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_060000L_20110527_120000V_cnt.txt
> >
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_090000L_20110527_150000V_cnt.txt
> >
>
/home/jraby/MET_PointStat_30WRF/results_m1o1/20110527/point_stat_m1o1pb_120000L_20110527_180000V_cnt.txt
> >
> > I cut off the rest of the dialog so as not to fill a lot of space
in this
> > email, but it lists all the cnt.txt files as if it finds the files
in
> order
> > to work with them.
> >
> > Not sure what this tells you.
> >
> > R/
> > John
> > ________________________________________
> > From: John Halley Gotway via RT [met_help at ucar.edu]
> > Sent: Wednesday, August 20, 2014 4:45 PM
> > To: Raby, John W CIV USARMY ARL (US)
> > Subject: Re: [rt.rap.ucar.edu #68716] Rscript for boxplots
> (UNCLASSIFIED)
> >
> > John,
> >
> > Just to be clear, are you running these commands in the directory
that
> > contains the "plot_cnt.R" file?  You could try running using the
full
> path
> > that file:
> >   Rscript /full/path/to/plot_cnt.R /full/path/to/*_cnt.txt
> >
> > That script does write a temp file and an output file to current
> > directory.  So you'll need write permission in the directory
you're
> running
> > it.
> >
> > Looks like that version of the web has headers for METv3.0.  We'll
need
> to
> > update those header for the upcoming version 5.0 release.
> >
> > Thanks,
> > John
> >
> >
> > On Wed, Aug 20, 2014 at 4:08 PM, Raby, John W USA CIV via RT <
> > met_help at ucar.edu> wrote:
> >
> > >
> > > Wed Aug 20 16:08:00 2014: Request 68716 was acted upon.
> > > Transaction: Ticket created by john.w.raby2.civ at mail.mil
> > >        Queue: met_help
> > >      Subject: Rscript for boxplots (UNCLASSIFIED)
> > >        Owner: Nobody
> > >   Requestors: john.w.raby2.civ at mail.mil
> > >       Status: new
> > >  Ticket <URL:
https://rt.rap.ucar.edu/rt/Ticket/Display.html?id=68716
> >
> > >
> > >
> > > Classification: UNCLASSIFIED
> > > Caveats: NONE
> > >
> > > In APR of 2012, I successfully ran the script " plot_cnt.R"
which I
> > > downloaded from the DTC website. (Analysis scripts page). I was
able to
> > get
> > > it running and interacted with John Halley Gotway to optimize
the way
> it
> > > runs for my data. For some reason, now I am getting an error
when I run
> > > the
> > > command "Rscript plot_cnt.R" in the command line positioned in
the
> > > RGraphics
> > > directory, it says "Rscript execution error: no such file of
> directory".
> > I
> > > verified paths to Rscript and R. I also tried "Rscript
./plot_cnt.R",
> but
> > > no
> > > change. Do you have any suggestions on possible causes/fixes?
> > >
> > > Thanks.
> > >
> > > R/
> > > John
> > >
> > > Classification: UNCLASSIFIED
> > > Caveats: NONE
> > >
> > >
> > >
> > >
> >
> >
> >
> >
>
>
>

------------------------------------------------


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